FF:10784-110H1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005895 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007954;DRR008826;DRZ000251;DRZ001636;DRZ011601;DRZ012986 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0003134,UBERON:0000344,UBERON:0005156,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3111,DOID:3603 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0100977,FF:0100811,FF:0104883 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100977,FF:0101120 | |fonse_cell_line=FF:0100977,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100977,FF:0101120 | |fonse_cell_line_closure=FF:0100977,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mucinous%2520cystadenocarcinoma%2520cell%2520line%253aMCAS.CNhs11873.10784-110H1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mucinous%2520cystadenocarcinoma%2520cell%2520line%253aMCAS.CNhs11873.10784-110H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mucinous%2520cystadenocarcinoma%2520cell%2520line%253aMCAS.CNhs11873.10784-110H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mucinous%2520cystadenocarcinoma%2520cell%2520line%253aMCAS.CNhs11873.10784-110H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mucinous%2520cystadenocarcinoma%2520cell%2520line%253aMCAS.CNhs11873.10784-110H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10784-110H1 | |id=FF:10784-110H1 | ||
|is_a=DOID:3603;;EFO:0002091 | |is_a=DOID:3603;;EFO:0002091;;FF:0000210;;FF:0104883;;UBERON:0000344 | ||
|name=mucinous cystadenocarcinoma | |is_obsolete= | ||
|library_id=CNhs11873 | |||
|library_id_phase_based=2:CNhs11873 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10784 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10784 | |||
|name=mucinous cystadenocarcinoma cell line:MCAS | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11873,LSID830,release010,COMPLETED | |profile_hcage=CNhs11873,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0416280319293049,0,0,0,0,-0.0770619662277763,0,-0.12174309181574,0.0254759625371975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112731849068333,0,0,0,0,0,-0.0147018324094477,0,0,-0.0497005259202525,0,0,0,0,0,0,0,0,0,0,0.213235139917941,0,0.0724291519342816,0,0,0,0,0,0,0,0,0.543807826255856,0,0,0,0,0,0,0.0832560638586098,0.0560978451477452,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15309020639035,0,0,0,0,0,0,0,0,0,0,0.0594051464449532,0,0,0,0.0722539865455596,-0.0546266452989715,0,0,0.0416280319293049,0.0832560638586098,-0.0147792873790966,-0.0203040656764151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422969658534836,0.15309020639035,0,0,0,-0.219936519498576,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0147792873790966,0,0.0832560638586098,0.0832560638586098,0.0832560638586098,0,0,0,0,0,0,0,0.182653634723824,0,0.0191098148930303,0.0697199973944695,0.0416280319293049,0,0.0206089394484805,0,0,0,0,0,0,0,0,0,0.469396489594355,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,0.394792674253176,0,-0.132630029220205,-0.0683442610773682,0,0,0,0,-0.228612637405019,0,0.0923556561242008,-0.0827201683234173,0,-0.0472322186077805,0.0275435670774278,0,0,0,-0.57818441921314,0.551397183123885,0,0,0.152460645694932,-0.181349618560659,0,0,-0.391044581551635,0,-0.0614706670258165,0.285891076523665,0,0.0153506461538911,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.0609337372622081,-0.026212431307063,0.0240832103158439,0.0832560638586098,0,0.377371049698024,0,0,1.02984971436108,0.197694448501107,0,0.146836481266062,0,-0.302389727009913,0.0060921327882149,0.0924374577959743,-0.126111981142358,-0.147401849371139,-0.189981719549847,0,0.0105202167410199,-0.703016565255402,0.156292537038436,0.0594051464449532,0.016152976630742,-1.07831830189675,0.332099064226314,0,0.313141514793795,0,0.200583304439115,0,0.5658845762649,-0.134496033656476,0.262216865352615,0.076212553311626,-0.132931244484341,0.0726805938453705,-0.478118445467037,-0.0395325284566706,-0.0276039428872062,0,-0.28854489519532,0.0525796105817378,0,0.0758914533527959,-0.0455473706827959,-0.188395750560403,0.339854876906564,0,-0.170835947017186,0.0149118027812416,0,-0.313855996457957,0.282787676550669,0,-0.130322594403641,0.334220875489629,0,0,0,0,0,-0.112120933428086,-0.145183231345399,0.033199297861216,0,-0.147947385231965,0,0.0337293336291227,0,-0.223841754130787,-0.118914697752196,0.0655686295759562,-0.256369828492739,0,-0.00299207563331039,0.0552994586462281,-0.081734632480393,-0.109253290597943,-0.0584468268118252,-0.110369014508392,0.144590181772775,0.319870926205815,-0.0210289950443161,-0.122662726601907,-0.0048707686166779,0,0.210256939274832,0.350711143797629,0.0433482444670004,0.336472909979623,0,-0.0851472460066658,0,0.322464555605704,0,0.105181670406868,0.242861601291217,-0.226054234662745,0.361512800508446,0,0.0453832859562714,-0.635040731383624,0.0832560638586098,0.266373760853684,-0.0393477300978659,0.852970833523101,0.162774431459155,0.528862936573958,-0.170022395935284,-0.138989456679195,0,0.256921267513994,0,0,-0.0408049461493663,-0.235476037764389,0,-0.0693261554566115,-0.214894002528628,0.163694828550616,-0.0327150095763242,0,0.107313780512517,0.329845655850787,0.0258226191172083,0,0.33946904711875,0,0.115620306141521,-0.253326341486756,-0.0892134381599725,-0.108622809454255,0,0,-0.177527765965176,0,0.046234057980066,0,0,0.181904311383016,0,0,0,0,0,0,0,0,0,0.0985393551190395,0,0,0.021190433122132,-0.141598190298507,0,0.0832560638586098,0,0.15309020639035,0,0,0.15309020639035,0,0,0,0.241436056902743,0,-0.12301741567642,0.13302742970838,0,0,0,-0.0626331961631243,-0.119980498236114,0.0832560638586098,0.0212274998927186,0,0,0,0,-0.00288492593060154,0,0,0,0.0416280319293049,-0.057730457053664,-0.131323307951853,0,0,0.0416280319293049,-0.12386419521144,0,0,0,0,0.173812007633763,0,0,-0.276311492566082,0,-0.108769374540719,0.00167418431176838,0,-0.205268120067348,0.0498710093933625,1.01213624170915,0,0.0832560638586098,-0.178091067931278,0,0,0.0428107598916754,0,0.0832560638586098,-0.0209247759461169,0,0,0,0,0,0,-0.214314512399756,0.0416280319293049,0,0,0,0,0,0,0,0,0,0,0.0153084116424644,-0.0922240566585104,0.429832510009388,0,0,0,0,0,0,0.185466509824653,0.070174915154548,0,0,0,0,0,0,0,0,-0.158284424869448,0,0,0,0,0,0.0560978451477452,0,0,0,0.0832560638586098,-0.102138281315955,0,0,0.244355499122716,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0400630221768379,-0.241052989414945,0,0,0,0,0,0,0,-0.12174309181574,0,0.15309020639035,0,0,0.0993507662089642,0,0,0,0.325036125220232,0,-0.0770619662277763,0,0,0,0,0,0.0832560638586098,0.0416280319293049,0.0416280319293049,0,0,0,0,0,0.0832560638586098,0,0,0,0.197154455842384,0,0,0,0.367127092417002,0,-0.0887781044873017,0.0937213934790297,0,0,0.0139696641894777,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15309020639035,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0147018324094477,0,0,-0.0920328098005262,0,0,0,0,0.0882185302830427,0,0.142834414186994,0.0375659280699665,-0.0768648931212,0,0,0,-0.054385572482455,0,0,-0.0482120461578062,0.0832560638586098,-0.0667773874189013,0,0,0,0,0,0,0,0,0.0832560638586098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112233453088393,0,0,0.112731849068333,0,0,0,0,0,0,0,0,0,0,0,0,0.076545103195175,0,0,0,0,0,0,0,0,0,0,0.0416280319293049,0,0,0,0,0.0416280319293049,0,0,0,0,0,0,0.114234238612859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15309020639035,0.073071738121712,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.0832560638586098,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0832560638586098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0572399728875347,0,0,0,0,0,0,0,0,0.213235139917941,0,0,0,0,-0.0482220752390542,0,0.128858507687914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.02878641119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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=27.71307 | |rna_weight_ug=27.71307 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0240 | |sample_cell_catalog=jcrb0240 | ||
|sample_cell_line=MCAS | |sample_cell_line=MCAS | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.89045831217446e-227!GO:0005737;cytoplasm;5.11865393573225e-186!GO:0043226;organelle;3.0214846173048e-179!GO:0043229;intracellular organelle;9.42188771636654e-179!GO:0043231;intracellular membrane-bound organelle;6.83722018482867e-171!GO:0043227;membrane-bound organelle;1.00775930908665e-170!GO:0044422;organelle part;4.4824626781455e-150!GO:0044446;intracellular organelle part;1.31091474029606e-148!GO:0044444;cytoplasmic part;3.24795624135561e-121!GO:0032991;macromolecular complex;1.31698004602833e-99!GO:0030529;ribonucleoprotein complex;1.68537619100028e-82!GO:0005515;protein binding;7.18092470887916e-81!GO:0044237;cellular metabolic process;1.93890857626004e-79!GO:0044238;primary metabolic process;1.48063231650062e-78!GO:0043170;macromolecule metabolic process;1.35494808753674e-74!GO:0044428;nuclear part;2.93910793248333e-74!GO:0043233;organelle lumen;1.58943517060439e-69!GO:0031974;membrane-enclosed lumen;1.58943517060439e-69!GO:0003723;RNA binding;2.642629764798e-69!GO:0005634;nucleus;1.8885161957551e-67!GO:0005739;mitochondrion;2.70814003568839e-63!GO:0019538;protein metabolic process;1.86683452106173e-59!GO:0006412;translation;2.15802303468888e-54!GO:0044267;cellular protein metabolic process;2.95846693449724e-54!GO:0044260;cellular macromolecule metabolic process;4.13633626061193e-53!GO:0005840;ribosome;7.43366298328446e-52!GO:0016043;cellular component organization and biogenesis;8.91104950198667e-52!GO:0043234;protein complex;3.62137357623157e-51!GO:0031090;organelle membrane;8.44480855592121e-50!GO:0006396;RNA processing;7.11955423201273e-48!GO:0015031;protein transport;4.88367979805632e-46!GO:0033036;macromolecule localization;5.45036096387758e-46!GO:0003735;structural constituent of ribosome;3.0144386495161e-45!GO:0031981;nuclear lumen;9.57337010685655e-45!GO:0043228;non-membrane-bound organelle;4.9328735896394e-44!GO:0043232;intracellular non-membrane-bound organelle;4.9328735896394e-44!GO:0009059;macromolecule biosynthetic process;1.0186486218099e-42!GO:0045184;establishment of protein localization;7.55130101456205e-42!GO:0008104;protein localization;1.05092215251785e-41!GO:0043283;biopolymer metabolic process;3.22468576707686e-41!GO:0009058;biosynthetic process;5.52762835763057e-41!GO:0044429;mitochondrial part;8.04800155881516e-41!GO:0044249;cellular biosynthetic process;4.36430082092783e-40!GO:0031967;organelle envelope;8.83269125736857e-40!GO:0031975;envelope;2.05802677457548e-39!GO:0046907;intracellular transport;1.90903585095669e-38!GO:0033279;ribosomal subunit;2.57521229127148e-38!GO:0016071;mRNA metabolic process;2.7471805039949e-38!GO:0005829;cytosol;6.81660630337968e-38!GO:0006996;organelle organization and biogenesis;4.01415370641312e-37!GO:0006259;DNA metabolic process;1.55814262185192e-33!GO:0065003;macromolecular complex assembly;7.21164019108457e-33!GO:0006397;mRNA processing;1.08813912182354e-32!GO:0008380;RNA splicing;2.3836376313732e-32!GO:0006886;intracellular protein transport;3.84504729431159e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.95820392487362e-31!GO:0007049;cell cycle;2.00832480229367e-30!GO:0010467;gene expression;6.4588395285701e-30!GO:0022607;cellular component assembly;6.31720438783567e-29!GO:0000166;nucleotide binding;6.93093534406282e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.1934120715479e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.72610123925108e-28!GO:0005654;nucleoplasm;3.11523959848339e-27!GO:0051649;establishment of cellular localization;5.45992804084657e-26!GO:0005740;mitochondrial envelope;1.22852434252643e-25!GO:0051641;cellular localization;2.06456091534629e-25!GO:0031966;mitochondrial membrane;2.96490485252155e-24!GO:0019866;organelle inner membrane;1.18842205742646e-23!GO:0012505;endomembrane system;4.92840831992594e-23!GO:0005681;spliceosome;5.59699704507706e-23!GO:0044451;nucleoplasm part;4.15957707966334e-22!GO:0044445;cytosolic part;1.31586214041807e-21!GO:0005743;mitochondrial inner membrane;1.92020383614796e-21!GO:0022402;cell cycle process;2.25750974813666e-21!GO:0032553;ribonucleotide binding;9.79219947571949e-21!GO:0032555;purine ribonucleotide binding;9.79219947571949e-21!GO:0017076;purine nucleotide binding;1.50659657214369e-20!GO:0043412;biopolymer modification;1.97793186035528e-20!GO:0016462;pyrophosphatase activity;3.16839701590058e-20!GO:0015934;large ribosomal subunit;3.24605048011571e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.02969945513606e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;6.12258070020881e-20!GO:0017111;nucleoside-triphosphatase activity;1.02886339786043e-19!GO:0043285;biopolymer catabolic process;1.39810483306252e-19!GO:0000278;mitotic cell cycle;3.20518283978544e-19!GO:0015935;small ribosomal subunit;3.94507982969781e-19!GO:0005524;ATP binding;4.51868004309852e-19!GO:0006119;oxidative phosphorylation;4.60397333074791e-19!GO:0006512;ubiquitin cycle;4.71552571234654e-19!GO:0006457;protein folding;4.77481737121704e-19!GO:0022618;protein-RNA complex assembly;4.83488483709496e-19!GO:0044265;cellular macromolecule catabolic process;4.83488483709496e-19!GO:0016874;ligase activity;7.30551077430143e-19!GO:0006464;protein modification process;1.00170542219499e-18!GO:0032559;adenyl ribonucleotide binding;1.02254065173167e-18!GO:0005730;nucleolus;1.4438835019462e-18!GO:0030554;adenyl nucleotide binding;2.65486097343842e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.98989436761723e-18!GO:0019941;modification-dependent protein catabolic process;3.67388891949938e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.67388891949938e-18!GO:0031980;mitochondrial lumen;5.07238967186145e-18!GO:0005759;mitochondrial matrix;5.07238967186145e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.94098807174737e-18!GO:0044455;mitochondrial membrane part;6.05467995933586e-18!GO:0044257;cellular protein catabolic process;1.08118735808061e-17!GO:0006974;response to DNA damage stimulus;1.20984238834501e-17!GO:0005694;chromosome;1.47327515252522e-17!GO:0009057;macromolecule catabolic process;6.55835052187653e-17!GO:0005794;Golgi apparatus;6.63611517894294e-17!GO:0030163;protein catabolic process;3.29792121010993e-16!GO:0006605;protein targeting;3.32658404408462e-16!GO:0043687;post-translational protein modification;4.0842300542195e-16!GO:0008134;transcription factor binding;5.75663547020401e-16!GO:0051276;chromosome organization and biogenesis;6.46740602904431e-16!GO:0008135;translation factor activity, nucleic acid binding;7.73328049390053e-16!GO:0044248;cellular catabolic process;9.16317290268907e-16!GO:0006281;DNA repair;2.3829062308145e-15!GO:0044427;chromosomal part;3.12364032599815e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.48675034764647e-15!GO:0048770;pigment granule;9.47788060637541e-15!GO:0042470;melanosome;9.47788060637541e-15!GO:0006260;DNA replication;1.09326033186437e-14!GO:0000087;M phase of mitotic cell cycle;1.28738303590259e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.83340318740608e-14!GO:0007067;mitosis;2.00643353841195e-14!GO:0005635;nuclear envelope;2.17358996667777e-14!GO:0003676;nucleic acid binding;2.2727145676869e-14!GO:0012501;programmed cell death;3.14904335687363e-14!GO:0005746;mitochondrial respiratory chain;3.34888620046476e-14!GO:0022403;cell cycle phase;4.32741473478257e-14!GO:0005761;mitochondrial ribosome;5.32491324810399e-14!GO:0000313;organellar ribosome;5.32491324810399e-14!GO:0006915;apoptosis;6.30589782078223e-14!GO:0048193;Golgi vesicle transport;6.9932329293424e-14!GO:0042254;ribosome biogenesis and assembly;1.11346392180896e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.23511678328353e-13!GO:0051301;cell division;1.86297706197434e-13!GO:0051726;regulation of cell cycle;1.97030182797855e-13!GO:0000074;regulation of progression through cell cycle;2.31437631487273e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.5472415352729e-13!GO:0008219;cell death;3.36726727015421e-13!GO:0016265;death;3.36726727015421e-13!GO:0031965;nuclear membrane;3.37301728388287e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.40491965906775e-13!GO:0003954;NADH dehydrogenase activity;3.40491965906775e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.40491965906775e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;4.0167710174344e-13!GO:0005783;endoplasmic reticulum;6.42444904043754e-13!GO:0051082;unfolded protein binding;6.72289523533859e-13!GO:0016887;ATPase activity;9.70211875758912e-13!GO:0006323;DNA packaging;1.83691586405134e-12!GO:0003743;translation initiation factor activity;1.83691586405134e-12!GO:0016192;vesicle-mediated transport;2.52517039814594e-12!GO:0006413;translational initiation;3.11040475185644e-12!GO:0044453;nuclear membrane part;3.41869650102613e-12!GO:0044432;endoplasmic reticulum part;3.89476227474212e-12!GO:0009719;response to endogenous stimulus;5.41342665352658e-12!GO:0000279;M phase;5.75426657508436e-12!GO:0042623;ATPase activity, coupled;8.33602121573197e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;8.68084975456276e-12!GO:0000375;RNA splicing, via transesterification reactions;8.68084975456276e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.68084975456276e-12!GO:0006913;nucleocytoplasmic transport;9.85340930863734e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.62234283975059e-11!GO:0006446;regulation of translational initiation;1.64628801222949e-11!GO:0016604;nuclear body;1.7313911773648e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.86867224810013e-11!GO:0042773;ATP synthesis coupled electron transport;1.86867224810013e-11!GO:0051169;nuclear transport;2.10023112543532e-11!GO:0051186;cofactor metabolic process;2.69087524333228e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.98812668911398e-11!GO:0045271;respiratory chain complex I;2.98812668911398e-11!GO:0005747;mitochondrial respiratory chain complex I;2.98812668911398e-11!GO:0051246;regulation of protein metabolic process;7.22691041931756e-11!GO:0005643;nuclear pore;8.49009935196686e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.69378569173758e-11!GO:0016070;RNA metabolic process;9.38425965767564e-11!GO:0008639;small protein conjugating enzyme activity;1.03186507233109e-10!GO:0004386;helicase activity;1.07674602359783e-10!GO:0006399;tRNA metabolic process;1.12845535773016e-10!GO:0006366;transcription from RNA polymerase II promoter;1.37234774427295e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.57730549580761e-10!GO:0006461;protein complex assembly;2.8611574949703e-10!GO:0009055;electron carrier activity;2.88770848968166e-10!GO:0004842;ubiquitin-protein ligase activity;3.90559515480839e-10!GO:0050657;nucleic acid transport;3.9258317527598e-10!GO:0051236;establishment of RNA localization;3.9258317527598e-10!GO:0050658;RNA transport;3.9258317527598e-10!GO:0006403;RNA localization;4.93906242933194e-10!GO:0000785;chromatin;5.56121186328773e-10!GO:0019787;small conjugating protein ligase activity;6.93090475128113e-10!GO:0008565;protein transporter activity;7.08880936283272e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.91906952017625e-10!GO:0003712;transcription cofactor activity;1.15694564251613e-09!GO:0065002;intracellular protein transport across a membrane;1.24701283635372e-09!GO:0006793;phosphorus metabolic process;1.52578626714578e-09!GO:0006796;phosphate metabolic process;1.52578626714578e-09!GO:0009056;catabolic process;2.01242179368072e-09!GO:0006732;coenzyme metabolic process;2.28698875092296e-09!GO:0005789;endoplasmic reticulum membrane;2.55100195857437e-09!GO:0016072;rRNA metabolic process;2.68358106923851e-09!GO:0008026;ATP-dependent helicase activity;2.76143633652315e-09!GO:0016607;nuclear speck;4.12798580519341e-09!GO:0046930;pore complex;4.2387732467806e-09!GO:0044431;Golgi apparatus part;6.22252961782809e-09!GO:0017038;protein import;6.69786696003432e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.69786696003432e-09!GO:0004812;aminoacyl-tRNA ligase activity;6.69786696003432e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.69786696003432e-09!GO:0016787;hydrolase activity;7.15213046356236e-09!GO:0016881;acid-amino acid ligase activity;9.19724211078665e-09!GO:0006364;rRNA processing;9.72940388070313e-09!GO:0016740;transferase activity;9.97837123128577e-09!GO:0043067;regulation of programmed cell death;1.2013109589559e-08!GO:0042981;regulation of apoptosis;1.49351611642603e-08!GO:0043038;amino acid activation;1.56885684719299e-08!GO:0006418;tRNA aminoacylation for protein translation;1.56885684719299e-08!GO:0043039;tRNA aminoacylation;1.56885684719299e-08!GO:0048523;negative regulation of cellular process;1.62835298890154e-08!GO:0005768;endosome;1.65438130902806e-08!GO:0051028;mRNA transport;1.68150853890357e-08!GO:0016568;chromatin modification;1.80099272111545e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.07415558022598e-08!GO:0030120;vesicle coat;3.08073498581998e-08!GO:0030662;coated vesicle membrane;3.08073498581998e-08!GO:0015630;microtubule cytoskeleton;3.83250906639142e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.85839421760117e-08!GO:0006333;chromatin assembly or disassembly;5.91381240604264e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.48307272957974e-08!GO:0005793;ER-Golgi intermediate compartment;6.92852436724764e-08!GO:0007005;mitochondrion organization and biogenesis;6.92852436724764e-08!GO:0032446;protein modification by small protein conjugation;7.82126770798494e-08!GO:0065004;protein-DNA complex assembly;1.00850571326325e-07!GO:0016567;protein ubiquitination;1.14991781916809e-07!GO:0048475;coated membrane;1.30193384404498e-07!GO:0030117;membrane coat;1.30193384404498e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.42492556678475e-07!GO:0009259;ribonucleotide metabolic process;1.5676207714916e-07!GO:0005667;transcription factor complex;1.71908540311911e-07!GO:0006261;DNA-dependent DNA replication;1.80423406132763e-07!GO:0006163;purine nucleotide metabolic process;2.06457137757679e-07!GO:0016310;phosphorylation;2.54518708550495e-07!GO:0048519;negative regulation of biological process;2.64710573357783e-07!GO:0016563;transcription activator activity;3.11349666437232e-07!GO:0015986;ATP synthesis coupled proton transport;3.59173870990901e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.59173870990901e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.75130010652371e-07!GO:0006164;purine nucleotide biosynthetic process;3.8764957524647e-07!GO:0009060;aerobic respiration;4.96803349126881e-07!GO:0000139;Golgi membrane;5.3740868579353e-07!GO:0005819;spindle;7.20566173700927e-07!GO:0009150;purine ribonucleotide metabolic process;7.83200429757237e-07!GO:0009260;ribonucleotide biosynthetic process;7.93553901419606e-07!GO:0051188;cofactor biosynthetic process;7.94053626105994e-07!GO:0000151;ubiquitin ligase complex;7.94053626105994e-07!GO:0043566;structure-specific DNA binding;8.8458157202878e-07!GO:0006916;anti-apoptosis;1.08786417051335e-06!GO:0019829;cation-transporting ATPase activity;1.10979583935948e-06!GO:0043069;negative regulation of programmed cell death;1.18773211286472e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.22494658870214e-06!GO:0003697;single-stranded DNA binding;1.34461126808946e-06!GO:0009141;nucleoside triphosphate metabolic process;1.35908639064695e-06!GO:0005813;centrosome;1.3813679534466e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.44592232516961e-06!GO:0043623;cellular protein complex assembly;1.60100271098044e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.74448433324078e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.74448433324078e-06!GO:0048522;positive regulation of cellular process;1.76740640740642e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.83737067582076e-06!GO:0045333;cellular respiration;2.40878920145245e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.50022407667656e-06!GO:0006754;ATP biosynthetic process;2.81496531069295e-06!GO:0006753;nucleoside phosphate metabolic process;2.81496531069295e-06!GO:0043066;negative regulation of apoptosis;2.86106374382921e-06!GO:0000775;chromosome, pericentric region;3.25126198027923e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.25627649703929e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.32225219696765e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.32225219696765e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.38249844801604e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.38249844801604e-06!GO:0007051;spindle organization and biogenesis;4.00347650422297e-06!GO:0005798;Golgi-associated vesicle;4.1680862274532e-06!GO:0046034;ATP metabolic process;4.1680862274532e-06!GO:0030532;small nuclear ribonucleoprotein complex;4.39622114806023e-06!GO:0005815;microtubule organizing center;4.43238494237616e-06!GO:0051170;nuclear import;4.58136843158251e-06!GO:0000245;spliceosome assembly;4.97480889566676e-06!GO:0003724;RNA helicase activity;5.14289714398295e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.28958252568586e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.41719650283072e-06!GO:0045786;negative regulation of progression through cell cycle;6.08900368921551e-06!GO:0045259;proton-transporting ATP synthase complex;6.63405398638055e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.65549205734147e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.96127425504108e-06!GO:0006606;protein import into nucleus;9.15387497947939e-06!GO:0050794;regulation of cellular process;1.0525657120276e-05!GO:0009108;coenzyme biosynthetic process;1.09529102354808e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.15210958668715e-05!GO:0006613;cotranslational protein targeting to membrane;1.1545649584759e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.1782995390494e-05!GO:0000075;cell cycle checkpoint;1.30577841785261e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.49774138068234e-05!GO:0016779;nucleotidyltransferase activity;1.52397561932496e-05!GO:0003713;transcription coactivator activity;1.64267304304307e-05!GO:0006752;group transfer coenzyme metabolic process;1.64688568642657e-05!GO:0019899;enzyme binding;1.79741856100727e-05!GO:0044440;endosomal part;1.8032666501572e-05!GO:0010008;endosome membrane;1.8032666501572e-05!GO:0007264;small GTPase mediated signal transduction;1.82717553924937e-05!GO:0051168;nuclear export;2.0612423938807e-05!GO:0006401;RNA catabolic process;2.42144011436812e-05!GO:0004298;threonine endopeptidase activity;2.7153191914023e-05!GO:0031324;negative regulation of cellular metabolic process;2.84092037287728e-05!GO:0007088;regulation of mitosis;2.9387043522109e-05!GO:0005762;mitochondrial large ribosomal subunit;2.94487926595611e-05!GO:0000315;organellar large ribosomal subunit;2.94487926595611e-05!GO:0003924;GTPase activity;3.03460027022725e-05!GO:0051329;interphase of mitotic cell cycle;3.05484983935762e-05!GO:0031497;chromatin assembly;3.07086674130548e-05!GO:0009892;negative regulation of metabolic process;3.09302288406318e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.11509794486629e-05!GO:0007010;cytoskeleton organization and biogenesis;3.43329888575708e-05!GO:0006099;tricarboxylic acid cycle;3.673563086613e-05!GO:0046356;acetyl-CoA catabolic process;3.673563086613e-05!GO:0006334;nucleosome assembly;4.44881197279494e-05!GO:0045454;cell redox homeostasis;4.87998304310125e-05!GO:0031988;membrane-bound vesicle;5.65285438016461e-05!GO:0045941;positive regulation of transcription;5.78746980491653e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.88415099857775e-05!GO:0006084;acetyl-CoA metabolic process;6.17218508082819e-05!GO:0065009;regulation of a molecular function;6.62480081293265e-05!GO:0000314;organellar small ribosomal subunit;6.64390435672612e-05!GO:0005763;mitochondrial small ribosomal subunit;6.64390435672612e-05!GO:0007243;protein kinase cascade;6.83373086531347e-05!GO:0051325;interphase;7.26630570542077e-05!GO:0009117;nucleotide metabolic process;7.29106273584822e-05!GO:0043021;ribonucleoprotein binding;7.57782187605459e-05!GO:0009109;coenzyme catabolic process;7.71010032497348e-05!GO:0006402;mRNA catabolic process;7.71243128477871e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.27759561488815e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;8.71430318480628e-05!GO:0051427;hormone receptor binding;9.41784217939799e-05!GO:0042802;identical protein binding;0.000103220982596764!GO:0005525;GTP binding;0.000115681186578017!GO:0051252;regulation of RNA metabolic process;0.000125588037565009!GO:0030036;actin cytoskeleton organization and biogenesis;0.000130487365758216!GO:0003899;DNA-directed RNA polymerase activity;0.000138412779755983!GO:0051052;regulation of DNA metabolic process;0.00014094576541524!GO:0031982;vesicle;0.000144992027456792!GO:0016363;nuclear matrix;0.000186896261277433!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000188483107681768!GO:0051187;cofactor catabolic process;0.00018972177111859!GO:0048518;positive regulation of biological process;0.000192156491627743!GO:0031410;cytoplasmic vesicle;0.000194661485385368!GO:0035257;nuclear hormone receptor binding;0.000197065202342261!GO:0031072;heat shock protein binding;0.000227899244647772!GO:0045893;positive regulation of transcription, DNA-dependent;0.000235818515378549!GO:0003729;mRNA binding;0.000241297493249458!GO:0005769;early endosome;0.000255276287648364!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000263368814025224!GO:0008092;cytoskeletal protein binding;0.000269257049777034!GO:0005657;replication fork;0.000312921658761176!GO:0016853;isomerase activity;0.000333840282348284!GO:0030658;transport vesicle membrane;0.00033398013615324!GO:0008094;DNA-dependent ATPase activity;0.000353989494528267!GO:0006612;protein targeting to membrane;0.000364045963929121!GO:0031252;leading edge;0.00036520165065018!GO:0005770;late endosome;0.000375828805968497!GO:0004674;protein serine/threonine kinase activity;0.000387656833818032!GO:0003690;double-stranded DNA binding;0.000410120907689445!GO:0008186;RNA-dependent ATPase activity;0.000424145157349678!GO:0008022;protein C-terminus binding;0.000491029251998781!GO:0006839;mitochondrial transport;0.000544729625739675!GO:0016564;transcription repressor activity;0.000546455410016598!GO:0006626;protein targeting to mitochondrion;0.000586699823846106!GO:0000049;tRNA binding;0.000598589273651324!GO:0030118;clathrin coat;0.000647563397316831!GO:0051338;regulation of transferase activity;0.000671596120317554!GO:0003682;chromatin binding;0.00070810791955379!GO:0005788;endoplasmic reticulum lumen;0.000741672215196333!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000741672215196333!GO:0006091;generation of precursor metabolites and energy;0.000741672215196333!GO:0003714;transcription corepressor activity;0.000764532909838158!GO:0005885;Arp2/3 protein complex;0.000798629724956164!GO:0006302;double-strand break repair;0.000809841365451641!GO:0030660;Golgi-associated vesicle membrane;0.00082172893846296!GO:0043681;protein import into mitochondrion;0.000825233819185536!GO:0009967;positive regulation of signal transduction;0.000825233819185536!GO:0019752;carboxylic acid metabolic process;0.000828096214199334!GO:0030133;transport vesicle;0.000851855089726479!GO:0048471;perinuclear region of cytoplasm;0.000869607731514225!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000883630746831309!GO:0000776;kinetochore;0.000889139942284552!GO:0005741;mitochondrial outer membrane;0.00089296360343236!GO:0006082;organic acid metabolic process;0.000921580083708697!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000929383739572847!GO:0003684;damaged DNA binding;0.000942794361296683!GO:0008033;tRNA processing;0.00101612090602272!GO:0016859;cis-trans isomerase activity;0.00102351330498778!GO:0006520;amino acid metabolic process;0.00105730522000426!GO:0030132;clathrin coat of coated pit;0.00107154305825662!GO:0030029;actin filament-based process;0.00107166084393524!GO:0005048;signal sequence binding;0.00107959787794914!GO:0005905;coated pit;0.0010978622913104!GO:0045045;secretory pathway;0.00111749408957078!GO:0006417;regulation of translation;0.00112582568024422!GO:0004004;ATP-dependent RNA helicase activity;0.00112803703438039!GO:0043549;regulation of kinase activity;0.00113338898375258!GO:0032561;guanyl ribonucleotide binding;0.00113338898375258!GO:0019001;guanyl nucleotide binding;0.00113338898375258!GO:0031968;organelle outer membrane;0.00118155842030298!GO:0043488;regulation of mRNA stability;0.00119039373800465!GO:0043487;regulation of RNA stability;0.00119039373800465!GO:0032508;DNA duplex unwinding;0.00128646594648658!GO:0032392;DNA geometric change;0.00128646594648658!GO:0006950;response to stress;0.00145513445946602!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00146716236697693!GO:0016791;phosphoric monoester hydrolase activity;0.00148308647964343!GO:0006352;transcription initiation;0.00152074278348218!GO:0007052;mitotic spindle organization and biogenesis;0.00153915434289381!GO:0016311;dephosphorylation;0.00155629739399277!GO:0033116;ER-Golgi intermediate compartment membrane;0.00155704726731116!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00156081349220704!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00156263008045422!GO:0048500;signal recognition particle;0.00156286963923026!GO:0044452;nucleolar part;0.00158822346044013!GO:0019867;outer membrane;0.00164663224630518!GO:0050790;regulation of catalytic activity;0.00176861055699699!GO:0051789;response to protein stimulus;0.00185217507344758!GO:0006986;response to unfolded protein;0.00185217507344758!GO:0007093;mitotic cell cycle checkpoint;0.00188783254015209!GO:0016301;kinase activity;0.00191267509564442!GO:0030867;rough endoplasmic reticulum membrane;0.00191992684004469!GO:0009893;positive regulation of metabolic process;0.00197363980646353!GO:0005876;spindle microtubule;0.00211641576508329!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00225882317872447!GO:0030125;clathrin vesicle coat;0.00225882317872447!GO:0030665;clathrin coated vesicle membrane;0.00225882317872447!GO:0051920;peroxiredoxin activity;0.00226158317953894!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00235089417794886!GO:0000059;protein import into nucleus, docking;0.00243305991730799!GO:0016197;endosome transport;0.00244614014415483!GO:0051128;regulation of cellular component organization and biogenesis;0.00252631669529734!GO:0008654;phospholipid biosynthetic process;0.00253873333038609!GO:0045859;regulation of protein kinase activity;0.00255880095860986!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0025784192048117!GO:0015399;primary active transmembrane transporter activity;0.0025784192048117!GO:0030119;AP-type membrane coat adaptor complex;0.00258356107799086!GO:0048468;cell development;0.00261454740640471!GO:0016481;negative regulation of transcription;0.00264631656611045!GO:0050662;coenzyme binding;0.00264631656611045!GO:0016491;oxidoreductase activity;0.00265315265877772!GO:0048037;cofactor binding;0.00265725286932661!GO:0006891;intra-Golgi vesicle-mediated transport;0.00266867878772745!GO:0030176;integral to endoplasmic reticulum membrane;0.00273812119560718!GO:0030131;clathrin adaptor complex;0.00282596885010973!GO:0007265;Ras protein signal transduction;0.00282596885010973!GO:0006405;RNA export from nucleus;0.0029263622797071!GO:0000082;G1/S transition of mitotic cell cycle;0.00295460412349866!GO:0006383;transcription from RNA polymerase III promoter;0.00303015693971411!GO:0005773;vacuole;0.00303015693971411!GO:0005874;microtubule;0.00312576215120794!GO:0006268;DNA unwinding during replication;0.00314492115718696!GO:0005637;nuclear inner membrane;0.00316036291050199!GO:0050789;regulation of biological process;0.00316728749905894!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00327715839903013!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00327715839903013!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00327715839903013!GO:0007059;chromosome segregation;0.00327715839903013!GO:0006414;translational elongation;0.00341291328695254!GO:0046983;protein dimerization activity;0.00344713994553711!GO:0016272;prefoldin complex;0.0035273193997197!GO:0007050;cell cycle arrest;0.0037815744711965!GO:0031326;regulation of cellular biosynthetic process;0.00387484669145703!GO:0035258;steroid hormone receptor binding;0.00392357383131579!GO:0007017;microtubule-based process;0.00395925360104148!GO:0004721;phosphoprotein phosphatase activity;0.00402183473853709!GO:0008168;methyltransferase activity;0.0040708990897327!GO:0009889;regulation of biosynthetic process;0.00416121233780472!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00418601302790065!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00442281705774273!GO:0045047;protein targeting to ER;0.00442281705774273!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00446923623091277!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00450326946254661!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00451300047239153!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00451300047239153!GO:0003678;DNA helicase activity;0.00460354263871548!GO:0016741;transferase activity, transferring one-carbon groups;0.00486900677598623!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00497401846570943!GO:0006818;hydrogen transport;0.00500162125886329!GO:0007242;intracellular signaling cascade;0.00506451979422294!GO:0015980;energy derivation by oxidation of organic compounds;0.00508495913587228!GO:0030880;RNA polymerase complex;0.00527364620756431!GO:0051287;NAD binding;0.0055630756944698!GO:0016251;general RNA polymerase II transcription factor activity;0.00559316683238343!GO:0015992;proton transport;0.00560914786534088!GO:0007006;mitochondrial membrane organization and biogenesis;0.00566363717864963!GO:0003711;transcription elongation regulator activity;0.00574806796607853!GO:0006611;protein export from nucleus;0.00576607574834559!GO:0030663;COPI coated vesicle membrane;0.00576607574834559!GO:0030126;COPI vesicle coat;0.00576607574834559!GO:0008139;nuclear localization sequence binding;0.00578137804203619!GO:0008312;7S RNA binding;0.00583660577987751!GO:0030134;ER to Golgi transport vesicle;0.00599975825170434!GO:0000786;nucleosome;0.00605381372885789!GO:0051087;chaperone binding;0.00613131185809508!GO:0030659;cytoplasmic vesicle membrane;0.00620005722697331!GO:0006284;base-excision repair;0.00622760496021305!GO:0005856;cytoskeleton;0.00640132079528141!GO:0006275;regulation of DNA replication;0.00641110745289191!GO:0005083;small GTPase regulator activity;0.00645576232422161!GO:0005684;U2-dependent spliceosome;0.0068486999696029!GO:0031325;positive regulation of cellular metabolic process;0.00684894667671545!GO:0008632;apoptotic program;0.00693808811720773!GO:0006892;post-Golgi vesicle-mediated transport;0.00697853911058472!GO:0048487;beta-tubulin binding;0.0070231687232647!GO:0030127;COPII vesicle coat;0.00724382605709565!GO:0012507;ER to Golgi transport vesicle membrane;0.00724382605709565!GO:0046483;heterocycle metabolic process;0.00729673119824068!GO:0006289;nucleotide-excision repair;0.0074655657811916!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00770988557937411!GO:0004518;nuclease activity;0.00802644431819513!GO:0030521;androgen receptor signaling pathway;0.00804140324219542!GO:0043022;ribosome binding;0.00813138049276291!GO:0004527;exonuclease activity;0.00911162378384562!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00927769045389187!GO:0000428;DNA-directed RNA polymerase complex;0.00927769045389187!GO:0043065;positive regulation of apoptosis;0.00958861788504059!GO:0004722;protein serine/threonine phosphatase activity;0.00960040272511222!GO:0006270;DNA replication initiation;0.00984792388605526!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0100535784995982!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0102719450440404!GO:0016044;membrane organization and biogenesis;0.0105197110531045!GO:0019843;rRNA binding;0.0106345897683286!GO:0008287;protein serine/threonine phosphatase complex;0.0106582595988284!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0107240995899576!GO:0016584;nucleosome positioning;0.0107354002219436!GO:0017166;vinculin binding;0.0108298501198886!GO:0030137;COPI-coated vesicle;0.0112784336143439!GO:0043492;ATPase activity, coupled to movement of substances;0.0113641993211397!GO:0033673;negative regulation of kinase activity;0.0117653827892072!GO:0006469;negative regulation of protein kinase activity;0.0117653827892072!GO:0006470;protein amino acid dephosphorylation;0.0118412110017916!GO:0000323;lytic vacuole;0.0119656347756564!GO:0005764;lysosome;0.0119656347756564!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.011976207545559!GO:0015002;heme-copper terminal oxidase activity;0.011976207545559!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.011976207545559!GO:0004129;cytochrome-c oxidase activity;0.011976207545559!GO:0008637;apoptotic mitochondrial changes;0.0121853361662949!GO:0043068;positive regulation of programmed cell death;0.0122113695293189!GO:0008361;regulation of cell size;0.0122135396277321!GO:0003746;translation elongation factor activity;0.0125848346442674!GO:0009112;nucleobase metabolic process;0.0131124031380665!GO:0006595;polyamine metabolic process;0.0133733071441697!GO:0048146;positive regulation of fibroblast proliferation;0.0136768562455747!GO:0015631;tubulin binding;0.0139929869665084!GO:0008234;cysteine-type peptidase activity;0.0140291656182113!GO:0031625;ubiquitin protein ligase binding;0.0145406209302137!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0147461118370623!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0147891390593801!GO:0000792;heterochromatin;0.01485244068361!GO:0009116;nucleoside metabolic process;0.0151790917845133!GO:0050681;androgen receptor binding;0.0154235752894635!GO:0008243;plasminogen activator activity;0.0156757088437534!GO:0006310;DNA recombination;0.015693190068724!GO:0009966;regulation of signal transduction;0.0162332229537384!GO:0007266;Rho protein signal transduction;0.0167146998002243!GO:0031529;ruffle organization and biogenesis;0.0168187391480989!GO:0008276;protein methyltransferase activity;0.0168722487318545!GO:0006984;ER-nuclear signaling pathway;0.0171094941048919!GO:0006509;membrane protein ectodomain proteolysis;0.0171284081918542!GO:0033619;membrane protein proteolysis;0.0171284081918542!GO:0048144;fibroblast proliferation;0.0171353984229742!GO:0048145;regulation of fibroblast proliferation;0.0171353984229742!GO:0007030;Golgi organization and biogenesis;0.0177389248463001!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0177521076871452!GO:0033043;regulation of organelle organization and biogenesis;0.0177521076871452!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0179280819777245!GO:0005669;transcription factor TFIID complex;0.0179658911440478!GO:0051348;negative regulation of transferase activity;0.0179922774887076!GO:0046982;protein heterodimerization activity;0.0180109208381606!GO:0046474;glycerophospholipid biosynthetic process;0.0180848743370745!GO:0005791;rough endoplasmic reticulum;0.0181314812084635!GO:0006354;RNA elongation;0.0182032472541556!GO:0016049;cell growth;0.0186304556426023!GO:0030145;manganese ion binding;0.0186905604617804!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0186905604617804!GO:0007034;vacuolar transport;0.0191614281280728!GO:0044433;cytoplasmic vesicle part;0.019545066504429!GO:0004860;protein kinase inhibitor activity;0.020053627785945!GO:0006519;amino acid and derivative metabolic process;0.0201234439931145!GO:0006376;mRNA splice site selection;0.0203172898589534!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0203172898589534!GO:0005832;chaperonin-containing T-complex;0.0204297593406808!GO:0022890;inorganic cation transmembrane transporter activity;0.0208154482023777!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0208738546173742!GO:0031124;mRNA 3'-end processing;0.0208738546173742!GO:0001726;ruffle;0.0211607560367412!GO:0045936;negative regulation of phosphate metabolic process;0.0215785876162252!GO:0008180;signalosome;0.0217668555175622!GO:0030695;GTPase regulator activity;0.022343743770403!GO:0008250;oligosaccharyl transferase complex;0.0226232825246939!GO:0001558;regulation of cell growth;0.0226662715202154!GO:0045334;clathrin-coated endocytic vesicle;0.0229093378834336!GO:0004576;oligosaccharyl transferase activity;0.022955910945066!GO:0007346;regulation of progression through mitotic cell cycle;0.0231497919314202!GO:0009165;nucleotide biosynthetic process;0.0231702014651761!GO:0007041;lysosomal transport;0.0231742315674002!GO:0000922;spindle pole;0.023271865646449!GO:0030140;trans-Golgi network transport vesicle;0.0236353967005042!GO:0051101;regulation of DNA binding;0.0237626992653772!GO:0043189;H4/H2A histone acetyltransferase complex;0.0239307479029287!GO:0001889;liver development;0.0241553168491331!GO:0003702;RNA polymerase II transcription factor activity;0.0250287293687497!GO:0032940;secretion by cell;0.0252437389819687!GO:0016569;covalent chromatin modification;0.0257505842594413!GO:0046489;phosphoinositide biosynthetic process;0.026331115009802!GO:0051059;NF-kappaB binding;0.0263894816983134!GO:0000118;histone deacetylase complex;0.0264103489653475!GO:0035267;NuA4 histone acetyltransferase complex;0.0265545303464605!GO:0008538;proteasome activator activity;0.0268801962311442!GO:0000339;RNA cap binding;0.0276729382031335!GO:0000096;sulfur amino acid metabolic process;0.0278952511699681!GO:0006144;purine base metabolic process;0.0284156314355964!GO:0006672;ceramide metabolic process;0.0285279080681642!GO:0044262;cellular carbohydrate metabolic process;0.0300260661966017!GO:0030433;ER-associated protein catabolic process;0.0303716288719561!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0303716288719561!GO:0032984;macromolecular complex disassembly;0.0305466046593167!GO:0030911;TPR domain binding;0.0305513729312597!GO:0008629;induction of apoptosis by intracellular signals;0.0307580638147274!GO:0012506;vesicle membrane;0.0308904317563527!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0310370930213638!GO:0046426;negative regulation of JAK-STAT cascade;0.031078533467293!GO:0045792;negative regulation of cell size;0.0311762022723164!GO:0051098;regulation of binding;0.0313460905722664!GO:0043624;cellular protein complex disassembly;0.0316275927136021!GO:0008652;amino acid biosynthetic process;0.0317287498693309!GO:0032535;regulation of cellular component size;0.0317287498693309!GO:0008047;enzyme activator activity;0.0318195885424801!GO:0019783;small conjugating protein-specific protease activity;0.0319267723506187!GO:0045926;negative regulation of growth;0.0321349693984914!GO:0030128;clathrin coat of endocytic vesicle;0.0322488062226808!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0322488062226808!GO:0030122;AP-2 adaptor complex;0.0322488062226808!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0323985752310862!GO:0006650;glycerophospholipid metabolic process;0.0324141447135587!GO:0000123;histone acetyltransferase complex;0.0326459424491825!GO:0030832;regulation of actin filament length;0.0326633294855496!GO:0006338;chromatin remodeling;0.0332422608646967!GO:0051053;negative regulation of DNA metabolic process;0.0338967233559043!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.034025119902864!GO:0030308;negative regulation of cell growth;0.0340585056400966!GO:0009119;ribonucleoside metabolic process;0.0345470569703213!GO:0031902;late endosome membrane;0.0345470569703213!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0345470569703213!GO:0040029;regulation of gene expression, epigenetic;0.0345936858373628!GO:0042393;histone binding;0.0347990825120142!GO:0031371;ubiquitin conjugating enzyme complex;0.0348407298567333!GO:0030833;regulation of actin filament polymerization;0.034983501480393!GO:0042326;negative regulation of phosphorylation;0.0350738793692253!GO:0032259;methylation;0.0356978413435742!GO:0050178;phenylpyruvate tautomerase activity;0.0359610035860607!GO:0042770;DNA damage response, signal transduction;0.0361733253502691!GO:0032981;mitochondrial respiratory chain complex I assembly;0.036714273926845!GO:0010257;NADH dehydrogenase complex assembly;0.036714273926845!GO:0033108;mitochondrial respiratory chain complex assembly;0.036714273926845!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.036714273926845!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.036714273926845!GO:0006497;protein amino acid lipidation;0.0368341470375997!GO:0043414;biopolymer methylation;0.0370114100317637!GO:0004128;cytochrome-b5 reductase activity;0.0371063601053798!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0372341304032943!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0376638888226666!GO:0005869;dynactin complex;0.0378532628436787!GO:0000725;recombinational repair;0.0379978546971678!GO:0000724;double-strand break repair via homologous recombination;0.0379978546971678!GO:0046519;sphingoid metabolic process;0.0385970720803051!GO:0005784;translocon complex;0.0392419677000821!GO:0004843;ubiquitin-specific protease activity;0.0393114852200414!GO:0009303;rRNA transcription;0.0397932920053579!GO:0030518;steroid hormone receptor signaling pathway;0.0397967125290449!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0401127002622144!GO:0040008;regulation of growth;0.0401897499434252!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0407435291691906!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0409832960970441!GO:0004003;ATP-dependent DNA helicase activity;0.0410719843553631!GO:0006458;'de novo' protein folding;0.0417026988394283!GO:0051084;'de novo' posttranslational protein folding;0.0417026988394283!GO:0019206;nucleoside kinase activity;0.0419454639015084!GO:0000152;nuclear ubiquitin ligase complex;0.0423771610833068!GO:0042158;lipoprotein biosynthetic process;0.043174154774373!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.043174154774373!GO:0046822;regulation of nucleocytoplasmic transport;0.0439612573365638!GO:0030384;phosphoinositide metabolic process;0.0450423627334333!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0450536541010433!GO:0012510;trans-Golgi network transport vesicle membrane;0.0450536541010433!GO:0043241;protein complex disassembly;0.0454215350448567!GO:0017134;fibroblast growth factor binding;0.0462031684238771!GO:0006607;NLS-bearing substrate import into nucleus;0.0462711706922301!GO:0003756;protein disulfide isomerase activity;0.0463426948620881!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0463426948620881!GO:0060166;olfactory pit development;0.0463426948620881!GO:0021768;nucleus accumbens development;0.0463426948620881!GO:0002072;optic cup morphogenesis involved in camera-type eye development;0.0463426948620881!GO:0030508;thiol-disulfide exchange intermediate activity;0.0464814764222687!GO:0015036;disulfide oxidoreductase activity;0.0464814764222687!GO:0031301;integral to organelle membrane;0.0467616880501715!GO:0004680;casein kinase activity;0.0471501628928228!GO:0007173;epidermal growth factor receptor signaling pathway;0.0471758233133542!GO:0030031;cell projection biogenesis;0.0476918949319819!GO:0031123;RNA 3'-end processing;0.0480484162599514!GO:0000287;magnesium ion binding;0.0484653624402317!GO:0006406;mRNA export from nucleus;0.0484724820579856!GO:0004177;aminopeptidase activity;0.0487330295804094!GO:0016407;acetyltransferase activity;0.0487616070141204!GO:0016790;thiolester hydrolase activity;0.0491652596503669!GO:0005862;muscle thin filament tropomyosin;0.0491652596503669!GO:0043596;nuclear replication fork;0.0491652596503669!GO:0032200;telomere organization and biogenesis;0.0492396066564848!GO:0000723;telomere maintenance;0.0492396066564848!GO:0008408;3'-5' exonuclease activity;0.0494429098073181!GO:0051540;metal cluster binding;0.0496436285581219!GO:0051536;iron-sulfur cluster binding;0.0496436285581219!GO:0008426;protein kinase C inhibitor activity;0.0498649364369377 | |||
|sample_id=10784 | |sample_id=10784 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=ovary | |sample_tissue=ovary | ||
|top_motifs=ZEB1:2.0593910752;SNAI1..3:1.81259568322;FOXQ1:1.60679696463;VSX1,2:1.47795793875;ONECUT1,2:1.34228291945;NKX3-1:1.19526481102;POU2F1..3:1.18907525317;bHLH_family:1.08417602573;POU5F1:1.04212941887;FOXD3:0.957304123526;TFDP1:0.936544709336;TBX4,5:0.919048054413;HOX{A6,A7,B6,B7}:0.904120311951;PPARG:0.859749799989;NKX2-3_NKX2-5:0.827559712296;LMO2:0.792132082414;PITX1..3:0.770154135063;ZNF148:0.765630936825;PAX8:0.763194927888;ELK1,4_GABP{A,B1}:0.745601413499;CRX:0.744081006355;LEF1_TCF7_TCF7L1,2:0.706715174114;TEAD1:0.68023292746;ADNP_IRX_SIX_ZHX:0.664920170257;FOX{I1,J2}:0.664184124423;TFAP2{A,C}:0.637933233796;PBX1:0.62325544939;FOXA2:0.60958743568;E2F1..5:0.608799407064;MYB:0.571294716387;FOS_FOS{B,L1}_JUN{B,D}:0.567182222604;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.543350124947;BACH2:0.51556105086;FOXM1:0.514240132036;BREu{core}:0.493078468155;OCT4_SOX2{dimer}:0.487784243664;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.461518429241;POU1F1:0.46016173568;TFAP2B:0.454014091679;HOX{A5,B5}:0.43608327154;NKX2-2,8:0.417640609624;TEF:0.396056953646;MYOD1:0.391024640973;NANOG:0.376427160393;NR5A1,2:0.375258676534;SOX{8,9,10}:0.340073050912;FOSL2:0.312494470572;CDC5L:0.310838275319;POU6F1:0.299032748195;AIRE:0.287861348299;XCPE1{core}:0.267648269691;NFE2:0.236322302752;FOX{F1,F2,J1}:0.221175003098;STAT5{A,B}:0.217834501689;EN1,2:0.207719154941;GATA6:0.204939814723;FOXN1:0.204478410388;CEBPA,B_DDIT3:0.183706162262;TFCP2:0.175957007305;PAX2:0.111608949669;ELF1,2,4:0.105844172799;SP1:0.0851814080126;HLF:0.0848668479018;IKZF1:0.0834848959123;EGR1..3:0.0726434565625;LHX3,4:0.0653251708911;ARID5B:0.0532486574921;ATF4:0.0440957330143;NFIL3:0.0396674910739;HNF1A:-0.0199256051696;MTE{core}:-0.0433995655648;NFY{A,B,C}:-0.0445352369435;TAL1_TCF{3,4,12}:-0.0506242969998;SOX2:-0.0542127279778;NR6A1:-0.0550474561418;PRRX1,2:-0.055244265631;TBP:-0.0562052906928;CUX2:-0.0818939561469;GLI1..3:-0.0828876415018;MED-1{core}:-0.0903189956638;NFKB1_REL_RELA:-0.0903390888825;HES1:-0.157163710474;HNF4A_NR2F1,2:-0.181041729329;ZFP161:-0.186986668229;RORA:-0.189906613308;ATF5_CREB3:-0.19365895794;ATF6:-0.194939724025;HIC1:-0.198899212238;AHR_ARNT_ARNT2:-0.198965007062;MTF1:-0.202348136637;GTF2A1,2:-0.210863286307;ZNF143:-0.217471724087;ESR1:-0.222699412102;ALX1:-0.223164332694;TLX2:-0.239195677664;MEF2{A,B,C,D}:-0.246946488985;SPI1:-0.259413911815;ETS1,2:-0.263700153023;POU3F1..4:-0.269503823941;ZBTB6:-0.27467985114;SOX17:-0.288295825816;RREB1:-0.293771340488;ZNF384:-0.303494879283;TP53:-0.312898377428;FOXP1:-0.324824911234;BPTF:-0.325244407787;MAZ:-0.336225783961;NKX3-2:-0.33910377547;JUN:-0.342784538359;TOPORS:-0.35017734082;RFX2..5_RFXANK_RFXAP:-0.350467158102;SOX5:-0.358805678031;NKX2-1,4:-0.359635605554;TLX1..3_NFIC{dimer}:-0.363565994552;NRF1:-0.372712832738;IRF7:-0.374796356788;PAX4:-0.377131485543;CREB1:-0.389590198036;SPIB:-0.390484111273;NFE2L2:-0.391836446441;YY1:-0.399986460994;PRDM1:-0.400581615387;RUNX1..3:-0.404840755063;PAX5:-0.419597620845;AR:-0.448568809894;PATZ1:-0.45295497214;GFI1B:-0.458811146682;HMGA1,2:-0.460876361209;EP300:-0.467626252192;ZBTB16:-0.477213072751;FOXO1,3,4:-0.482180783328;FOXL1:-0.48402400728;GFI1:-0.503172878613;MZF1:-0.529522108886;PAX3,7:-0.530862673345;GTF2I:-0.552740974369;ATF2:-0.55970977888;IRF1,2:-0.580296174595;HIF1A:-0.581020453874;UFEwm:-0.605704498885;NR1H4:-0.620191539459;NKX6-1,2:-0.632220068192;EVI1:-0.632430182034;KLF4:-0.640631476024;PAX6:-0.643553822926;FOX{D1,D2}:-0.656496168637;REST:-0.661997215677;RXRA_VDR{dimer}:-0.66825130179;NR3C1:-0.682062372349;HBP1_HMGB_SSRP1_UBTF:-0.686459964645;DMAP1_NCOR{1,2}_SMARC:-0.702086476249;NFATC1..3:-0.707755709085;DBP:-0.713929656802;NFE2L1:-0.71694806536;STAT2,4,6:-0.726388782293;XBP1:-0.735493374878;ZNF423:-0.738098168385;ZIC1..3:-0.755270540621;EBF1:-0.758445278247;SREBF1,2:-0.778791790069;HMX1:-0.784265792138;RFX1:-0.784670396696;PAX1,9:-0.794308636141;PDX1:-0.804306384886;IKZF2:-0.805071808676;SRF:-0.826282610016;ALX4:-0.830178181791;NHLH1,2:-0.835148069692;SPZ1:-0.841895478535;CDX1,2,4:-0.849158923709;ESRRA:-0.890848764952;HSF1,2:-0.89404241012;TFAP4:-0.910954066494;HAND1,2:-0.924385997961;MYFfamily:-0.940787040645;MYBL2:-0.944533386104;TGIF1:-0.957870319195;HOX{A4,D4}:-0.973848066778;MAFB:-0.995971307664;HOXA9_MEIS1:-0.99662275528;FOXP3:-1.01096934804;RBPJ:-1.03519245065;GATA4:-1.07315115387;SMAD1..7,9:-1.20332283307;GCM1,2:-1.20964455507;NFIX:-1.32691292027;T:-1.37370277607;ZNF238:-1.37719592133;GZF1:-1.38138346984;RXR{A,B,G}:-1.4842769326;NANOG{mouse}:-1.62439593869;STAT1,3:-2.46182513324 | |top_motifs=ZEB1:2.0593910752;SNAI1..3:1.81259568322;FOXQ1:1.60679696463;VSX1,2:1.47795793875;ONECUT1,2:1.34228291945;NKX3-1:1.19526481102;POU2F1..3:1.18907525317;bHLH_family:1.08417602573;POU5F1:1.04212941887;FOXD3:0.957304123526;TFDP1:0.936544709336;TBX4,5:0.919048054413;HOX{A6,A7,B6,B7}:0.904120311951;PPARG:0.859749799989;NKX2-3_NKX2-5:0.827559712296;LMO2:0.792132082414;PITX1..3:0.770154135063;ZNF148:0.765630936825;PAX8:0.763194927888;ELK1,4_GABP{A,B1}:0.745601413499;CRX:0.744081006355;LEF1_TCF7_TCF7L1,2:0.706715174114;TEAD1:0.68023292746;ADNP_IRX_SIX_ZHX:0.664920170257;FOX{I1,J2}:0.664184124423;TFAP2{A,C}:0.637933233796;PBX1:0.62325544939;FOXA2:0.60958743568;E2F1..5:0.608799407064;MYB:0.571294716387;FOS_FOS{B,L1}_JUN{B,D}:0.567182222604;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.543350124947;BACH2:0.51556105086;FOXM1:0.514240132036;BREu{core}:0.493078468155;OCT4_SOX2{dimer}:0.487784243664;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.461518429241;POU1F1:0.46016173568;TFAP2B:0.454014091679;HOX{A5,B5}:0.43608327154;NKX2-2,8:0.417640609624;TEF:0.396056953646;MYOD1:0.391024640973;NANOG:0.376427160393;NR5A1,2:0.375258676534;SOX{8,9,10}:0.340073050912;FOSL2:0.312494470572;CDC5L:0.310838275319;POU6F1:0.299032748195;AIRE:0.287861348299;XCPE1{core}:0.267648269691;NFE2:0.236322302752;FOX{F1,F2,J1}:0.221175003098;STAT5{A,B}:0.217834501689;EN1,2:0.207719154941;GATA6:0.204939814723;FOXN1:0.204478410388;CEBPA,B_DDIT3:0.183706162262;TFCP2:0.175957007305;PAX2:0.111608949669;ELF1,2,4:0.105844172799;SP1:0.0851814080126;HLF:0.0848668479018;IKZF1:0.0834848959123;EGR1..3:0.0726434565625;LHX3,4:0.0653251708911;ARID5B:0.0532486574921;ATF4:0.0440957330143;NFIL3:0.0396674910739;HNF1A:-0.0199256051696;MTE{core}:-0.0433995655648;NFY{A,B,C}:-0.0445352369435;TAL1_TCF{3,4,12}:-0.0506242969998;SOX2:-0.0542127279778;NR6A1:-0.0550474561418;PRRX1,2:-0.055244265631;TBP:-0.0562052906928;CUX2:-0.0818939561469;GLI1..3:-0.0828876415018;MED-1{core}:-0.0903189956638;NFKB1_REL_RELA:-0.0903390888825;HES1:-0.157163710474;HNF4A_NR2F1,2:-0.181041729329;ZFP161:-0.186986668229;RORA:-0.189906613308;ATF5_CREB3:-0.19365895794;ATF6:-0.194939724025;HIC1:-0.198899212238;AHR_ARNT_ARNT2:-0.198965007062;MTF1:-0.202348136637;GTF2A1,2:-0.210863286307;ZNF143:-0.217471724087;ESR1:-0.222699412102;ALX1:-0.223164332694;TLX2:-0.239195677664;MEF2{A,B,C,D}:-0.246946488985;SPI1:-0.259413911815;ETS1,2:-0.263700153023;POU3F1..4:-0.269503823941;ZBTB6:-0.27467985114;SOX17:-0.288295825816;RREB1:-0.293771340488;ZNF384:-0.303494879283;TP53:-0.312898377428;FOXP1:-0.324824911234;BPTF:-0.325244407787;MAZ:-0.336225783961;NKX3-2:-0.33910377547;JUN:-0.342784538359;TOPORS:-0.35017734082;RFX2..5_RFXANK_RFXAP:-0.350467158102;SOX5:-0.358805678031;NKX2-1,4:-0.359635605554;TLX1..3_NFIC{dimer}:-0.363565994552;NRF1:-0.372712832738;IRF7:-0.374796356788;PAX4:-0.377131485543;CREB1:-0.389590198036;SPIB:-0.390484111273;NFE2L2:-0.391836446441;YY1:-0.399986460994;PRDM1:-0.400581615387;RUNX1..3:-0.404840755063;PAX5:-0.419597620845;AR:-0.448568809894;PATZ1:-0.45295497214;GFI1B:-0.458811146682;HMGA1,2:-0.460876361209;EP300:-0.467626252192;ZBTB16:-0.477213072751;FOXO1,3,4:-0.482180783328;FOXL1:-0.48402400728;GFI1:-0.503172878613;MZF1:-0.529522108886;PAX3,7:-0.530862673345;GTF2I:-0.552740974369;ATF2:-0.55970977888;IRF1,2:-0.580296174595;HIF1A:-0.581020453874;UFEwm:-0.605704498885;NR1H4:-0.620191539459;NKX6-1,2:-0.632220068192;EVI1:-0.632430182034;KLF4:-0.640631476024;PAX6:-0.643553822926;FOX{D1,D2}:-0.656496168637;REST:-0.661997215677;RXRA_VDR{dimer}:-0.66825130179;NR3C1:-0.682062372349;HBP1_HMGB_SSRP1_UBTF:-0.686459964645;DMAP1_NCOR{1,2}_SMARC:-0.702086476249;NFATC1..3:-0.707755709085;DBP:-0.713929656802;NFE2L1:-0.71694806536;STAT2,4,6:-0.726388782293;XBP1:-0.735493374878;ZNF423:-0.738098168385;ZIC1..3:-0.755270540621;EBF1:-0.758445278247;SREBF1,2:-0.778791790069;HMX1:-0.784265792138;RFX1:-0.784670396696;PAX1,9:-0.794308636141;PDX1:-0.804306384886;IKZF2:-0.805071808676;SRF:-0.826282610016;ALX4:-0.830178181791;NHLH1,2:-0.835148069692;SPZ1:-0.841895478535;CDX1,2,4:-0.849158923709;ESRRA:-0.890848764952;HSF1,2:-0.89404241012;TFAP4:-0.910954066494;HAND1,2:-0.924385997961;MYFfamily:-0.940787040645;MYBL2:-0.944533386104;TGIF1:-0.957870319195;HOX{A4,D4}:-0.973848066778;MAFB:-0.995971307664;HOXA9_MEIS1:-0.99662275528;FOXP3:-1.01096934804;RBPJ:-1.03519245065;GATA4:-1.07315115387;SMAD1..7,9:-1.20332283307;GCM1,2:-1.20964455507;NFIX:-1.32691292027;T:-1.37370277607;ZNF238:-1.37719592133;GZF1:-1.38138346984;RXR{A,B,G}:-1.4842769326;NANOG{mouse}:-1.62439593869;STAT1,3:-2.46182513324 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10784-110H1;search_select_hide=table117:FF:10784-110H1 | |||
}} | }} | ||
Latest revision as of 15:04, 3 June 2020
| Name: | mucinous cystadenocarcinoma cell line:MCAS |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11873 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11873
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11873
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.581 |
| 10 | 10 | 0.956 |
| 100 | 100 | 0.885 |
| 101 | 101 | 0.0491 |
| 102 | 102 | 0.403 |
| 103 | 103 | 0.391 |
| 104 | 104 | 0.524 |
| 105 | 105 | 0.063 |
| 106 | 106 | 0.0745 |
| 107 | 107 | 0.104 |
| 108 | 108 | 0.388 |
| 109 | 109 | 0.00427 |
| 11 | 11 | 0.62 |
| 110 | 110 | 0.756 |
| 111 | 111 | 0.465 |
| 112 | 112 | 0.385 |
| 113 | 113 | 0.0373 |
| 114 | 114 | 0.65 |
| 115 | 115 | 0.813 |
| 116 | 116 | 0.25 |
| 117 | 117 | 0.621 |
| 118 | 118 | 0.568 |
| 119 | 119 | 0.582 |
| 12 | 12 | 0.673 |
| 120 | 120 | 0.602 |
| 121 | 121 | 0.947 |
| 122 | 122 | 0.015 |
| 123 | 123 | 0.62 |
| 124 | 124 | 0.0892 |
| 125 | 125 | 0.949 |
| 126 | 126 | 0.385 |
| 127 | 127 | 0.278 |
| 128 | 128 | 0.918 |
| 129 | 129 | 0.592 |
| 13 | 13 | 0.0757 |
| 130 | 130 | 0.415 |
| 131 | 131 | 0.512 |
| 132 | 132 | 0.857 |
| 133 | 133 | 0.12 |
| 134 | 134 | 0.0987 |
| 135 | 135 | 0.0274 |
| 136 | 136 | 0.112 |
| 137 | 137 | 0.332 |
| 138 | 138 | 0.789 |
| 139 | 139 | 0.665 |
| 14 | 14 | 0.967 |
| 140 | 140 | 0.794 |
| 141 | 141 | 0.246 |
| 142 | 142 | 0.671 |
| 143 | 143 | 0.22 |
| 144 | 144 | 0.0383 |
| 145 | 145 | 0.73 |
| 146 | 146 | 0.492 |
| 147 | 147 | 0.0562 |
| 148 | 148 | 0.138 |
| 149 | 149 | 0.207 |
| 15 | 15 | 0.179 |
| 150 | 150 | 0.256 |
| 151 | 151 | 0.816 |
| 152 | 152 | 0.0254 |
| 153 | 153 | 0.628 |
| 154 | 154 | 0.96 |
| 155 | 155 | 0.773 |
| 156 | 156 | 0.225 |
| 157 | 157 | 0.685 |
| 158 | 158 | 0.672 |
| 159 | 159 | 0.767 |
| 16 | 16 | 0.101 |
| 160 | 160 | 0.949 |
| 161 | 161 | 0.798 |
| 162 | 162 | 0.99 |
| 163 | 163 | 0.159 |
| 164 | 164 | 0.439 |
| 165 | 165 | 0.585 |
| 166 | 166 | 0.122 |
| 167 | 167 | 0.847 |
| 168 | 168 | 0.478 |
| 169 | 169 | 0.177 |
| 17 | 17 | 0.231 |
| 18 | 18 | 0.625 |
| 19 | 19 | 0.261 |
| 2 | 2 | 0.691 |
| 20 | 20 | 0.13 |
| 21 | 21 | 0.503 |
| 22 | 22 | 0.912 |
| 23 | 23 | 0.842 |
| 24 | 24 | 0.681 |
| 25 | 25 | 0.856 |
| 26 | 26 | 0.148 |
| 27 | 27 | 0.723 |
| 28 | 28 | 0.35 |
| 29 | 29 | 0.992 |
| 3 | 3 | 0.538 |
| 30 | 30 | 0.492 |
| 31 | 31 | 0.472 |
| 32 | 32 | 0.00728 |
| 33 | 33 | 0.0924 |
| 34 | 34 | 0.644 |
| 35 | 35 | 0.105 |
| 36 | 36 | 0.591 |
| 37 | 37 | 0.821 |
| 38 | 38 | 0.311 |
| 39 | 39 | 0.617 |
| 4 | 4 | 0.285 |
| 40 | 40 | 0.498 |
| 41 | 41 | 0.129 |
| 42 | 42 | 0.816 |
| 43 | 43 | 0.787 |
| 44 | 44 | 0.412 |
| 45 | 45 | 0.479 |
| 46 | 46 | 0.87 |
| 47 | 47 | 0.829 |
| 48 | 48 | 0.829 |
| 49 | 49 | 0.664 |
| 5 | 5 | 0.668 |
| 50 | 50 | 0.14 |
| 51 | 51 | 0.885 |
| 52 | 52 | 0.541 |
| 53 | 53 | 0.386 |
| 54 | 54 | 0.846 |
| 55 | 55 | 0.536 |
| 56 | 56 | 0.937 |
| 57 | 57 | 0.365 |
| 58 | 58 | 0.829 |
| 59 | 59 | 0.708 |
| 6 | 6 | 0.0255 |
| 60 | 60 | 0.19 |
| 61 | 61 | 0.189 |
| 62 | 62 | 0.649 |
| 63 | 63 | 0.117 |
| 64 | 64 | 0.973 |
| 65 | 65 | 0.562 |
| 66 | 66 | 0.0479 |
| 67 | 67 | 0.569 |
| 68 | 68 | 0.03 |
| 69 | 69 | 0.047 |
| 7 | 7 | 0.552 |
| 70 | 70 | 0.862 |
| 71 | 71 | 0.287 |
| 72 | 72 | 0.0556 |
| 73 | 73 | 0.0108 |
| 74 | 74 | 0.367 |
| 75 | 75 | 0.412 |
| 76 | 76 | 0.685 |
| 77 | 77 | 0.389 |
| 78 | 78 | 0.08 |
| 79 | 79 | 0.00327 |
| 8 | 8 | 0.958 |
| 80 | 80 | 0.556 |
| 81 | 81 | 0.0252 |
| 82 | 82 | 0.00638 |
| 83 | 83 | 0.253 |
| 84 | 84 | 0.465 |
| 85 | 85 | 0.361 |
| 86 | 86 | 0.549 |
| 87 | 87 | 0.0254 |
| 88 | 88 | 0.413 |
| 89 | 89 | 0.773 |
| 9 | 9 | 0.62 |
| 90 | 90 | 0.978 |
| 91 | 91 | 0.108 |
| 92 | 92 | 0.804 |
| 93 | 93 | 0.392 |
| 94 | 94 | 0.46 |
| 95 | 95 | 0.236 |
| 96 | 96 | 0.227 |
| 97 | 97 | 0.964 |
| 98 | 98 | 0.341 |
| 99 | 99 | 0.397 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11873
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:3603 mucinous cystadenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104883 cystadenocarcinoma cell line sample
UBERON:0000344 mucosa
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3111 (cystadenocarcinoma)
3603 (mucinous cystadenocarcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0003134 (female reproductive organ)
0000344 (mucosa)
0005156 (reproductive structure)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100977 (ovary cell line sample)
0100811 (ovary cancer cell line sample)
0104883 (cystadenocarcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
