FF:10807-111A6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005647 | |||
|accession_numbers=CAGE;DRX008021;DRR008893;DRZ000318;DRZ001703;DRZ011668;DRZ013053 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0003134,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0003134,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.30!200.23!SOX2;;chr20:31350184..31350200,+!p1@DNMT3B!1.95!178.53!DNMT3B;;chrX:136648279..136648295,+!p1@ZIC3!1.91!79.48!ZIC3;;chr8:70983476..70983493,-!p1@PRDM14!1.90!78.60!PRDM14;;chr13:100634031..100634045,+!p1@ZIC2!1.86!71.79!ZIC2;;chr6:31138439..31138475,-!p1@POU5F1!1.85!70.15!POU5F1;;chr6:137815524..137815537,-!p1@OLIG3!1.84!68.76!OLIG3;;chrX:136648643..136648711,+!p2@ZIC3!1.80!62.20!ZIC3;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!55.13!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.66!44.41!TFAP2A;;chr3:181429741..181429767,+!p2@SOX2!1.64!42.90!SOX2;;chr14:57272369..57272391,-!p2@OTX2!1.61!39.36!OTX2;;chr1:6304233..6304243,+!p1@HES3!1.57!36.08!HES3;;chr13:100623375..100623425,-!p1@ZIC5!1.52!32.30!ZIC5;;chr2:16080659..16080685,+!p1@MYCN!1.51!31.16!MYCN;;chr20:50418972..50419029,-!p1@SALL4!1.48!29.27!SALL4;;chrX:136648297..136648319,+!p3@ZIC3!1.48!28.89!ZIC3;;chrX:139587228..139587234,-!p1@SOX3!1.46!27.76!SOX3;;chr8:70983443..70983460,-!p2@PRDM14!1.45!27.50!PRDM14;;chr7:96654133..96654150,-!p1@DLX5!1.43!25.74!DLX5;;chr9:127358120..127358170,-!p3@NR6A1!1.40!24.10!NR6A1;;chr2:237077022..237077038,-!p1@GBX2!1.39!23.47!GBX2;;chr13:100634004..100634025,+!p2@ZIC2!1.37!22.33!ZIC2;;chr2:25475120..25475176,-!p2@DNMT3A!1.36!29.40!DNMT3A;;chr12:66218183..66218209,+!p4@HMGA2!1.34!39.49!HMGA2;;chr8:145701192..145701241,-!p1@FOXH1!1.34!20.94!FOXH1;;chr9:127533519..127533573,-!p2@NR6A1!1.33!24.73!NR6A1;;chrX:136648807..136648822,+!p8@ZIC3!1.33!20.57!ZIC3;;chrX:136648753..136648767,+!p5@ZIC3!1.32!19.93!ZIC3;;chr11:63684602..63684664,-!p1@RCOR2!1.30!37.22!RCOR2;;chr8:70983506..70983522,-!p3@PRDM14!1.29!18.67!PRDM14;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.29!18.42!ZBED1;;chr6:10412600..10412637,-!p1@TFAP2A!1.28!29.52!TFAP2A;;chr2:16081912..16081931,+!p2@MYCN!1.28!18.17!MYCN;;chr2:237076992..237077008,-!p2@GBX2!1.28!18.04!GBX2;;chr10:70320074..70320106,+!p1@TET1!1.27!35.20!TET1;;chr20:50419055..50419066,-!p3@SALL4!1.24!16.40!SALL4;;chrX:136648768..136648781,+!p6@ZIC3!1.23!15.90!ZIC3;;chr12:66218255..66218304,+!p3@HMGA2!1.22!41.38!HMGA2;;chr13:100634130..100634143,+!p3@ZIC2!1.21!15.14!ZIC2;;chr20:55204351..55204377,+!p1@TFAP2C!1.19!18.29!TFAP2C;;chr16:51185363..51185381,-!p4@SALL1!1.19!14.51!SALL1;;chr16:51185573..51185593,-!p3@SALL1!1.19!14.38!SALL1;;chr6:19837592..19837621,+!p1@ID4!1.18!85.04!ID4;;chr15:74833584..74833626,+!p1@ARID3B!1.17!31.67!ARID3B;;chr2:223163706..223163730,-!p1@PAX3!1.17!13.75!PAX3;;chr16:3149278..3149305,-!p1@ZSCAN10!1.17!13.63!ZSCAN10;;chr1:164528687..164528711,+!p6@PBX1!1.16!15.52!PBX1;;chr2:16082155..16082169,+!p3@MYCN!1.15!13.12!MYCN;;chr9:114287433..114287513,+!p1@ZNF483!1.13!32.30!ZNF483;;chr13:95364784..95364806,-!p1@SOX21!1.12!12.24!SOX21;;chr14:90085820..90085840,-!p6@FOXN3!1.11!11.86!FOXN3;;chr9:127533582..127533615,-!p1@NR6A1!1.10!17.28!NR6A1;;chr8:86089627..86089653,+!p3@E2F5!1.10!13.25!E2F5;;chr2:25475094..25475112,-!p3@DNMT3A!1.10!11.48!DNMT3A;;chr12:66218836..66218888,+!p1@HMGA2!1.09!106.11!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.09!16.65!HMGA2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.08!106.99!ZNF595;;chrX:136648735..136648747,+!p9@ZIC3!1.08!11.10!ZIC3;;chr5:2751762..2751784,-!p1@IRX2!1.08!11.10!IRX2;;chr12:7941989..7942014,+!p1@NANOG!1.05!10.09!NANOG;;chr12:66218152..66218174,+!p10@HMGA2!1.03!10.47!HMGA2;;chr2:85360499..85360598,+!p1@TCF7L1!1.02!53.62!TCF7L1;;chr14:21994337..21994442,-!p1@SALL2!1.02!26.62!SALL2;;chr13:100638100..100638115,+!p4@ZIC2!1.02!9.59!ZIC2;;chr12:3068544..3068597,+!p1@TEAD4!1.01!56.90!TEAD4;;chr17:41623009..41623053,-!p4@ETV4!1.01!15.01!ETV4;;chr12:66218378..66218401,+!p6@HMGA2!1.00!14.26!HMGA2;;chr20:42295713..42295738,+!p2@MYBL2!0.99!53.49!MYBL2;;chr16:51185318..51185348,-!p2@SALL1!0.98!8.58!SALL1;;chr16:29818199..29818216,+!p11@MAZ!0.97!13.75!MAZ;;chr10:114710098..114710130,+!p2@TCF7L2!0.95!61.06!TCF7L2;;chr9:126774018..126774055,+!p1@LHX2!0.95!7.95!LHX2;;chr13:72441074..72441172,-!p2@DACH1!0.95!7.82!DACH1;;chr5:134369905..134369972,-!p1@PITX1!0.93!11.61!PITX1;;chr6:34204672..34204692,+!p1@HMGA1!0.92!866.64!HMGA1;;chr7:42276822..42276895,-!p2@GLI3!0.92!22.84!GLI3;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.45!TFAP2A;;chr8:70983462..70983471,-!p4@PRDM14!0.92!7.32!PRDM14;;chr12:80084303..80084332,-!p1@PAWR!0.91!44.03!PAWR;;chr15:74833547..74833567,+!p2@ARID3B!0.91!10.22!ARID3B;;chr6:10417399..10417415,-!p32@TFAP2A!0.91!7.07!TFAP2A;;chr2:42795745..42795824,+!p1@MTA3!0.90!66.62!MTA3;;chr12:66218420..66218439,+!p12@HMGA2!0.90!6.94!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.89!15.27!SOHLH2;;chr12:66218443..66218461,+!p8@HMGA2!0.89!8.71!HMGA2;;chr19:46800289..46800327,+!p2@HIF3A!0.89!6.69!HIF3A;;chr6:10417454..10417460,-!p40@TFAP2A!0.88!6.56!TFAP2A;;chr8:145701166..145701187,-!p2@FOXH1!0.88!6.56!FOXH1;;chr2:88752207..88752218,-!p1@FOXI3!0.88!6.56!FOXI3;;chr20:42295745..42295765,+!p1@MYBL2!0.87!111.91!MYBL2;;chrX:136648554..136648576,+!p4@ZIC3!0.87!6.43!ZIC3;;chr16:54320675..54320715,-!p1@IRX3!0.86!14.13!IRX3;;chr18:56530136..56530199,+!p3@ZNF532!0.86!9.71!ZNF532;;chr7:96635178..96635181,+!p1@DLX6!0.86!6.18!DLX6;;chr12:66218598..66218645,+!p2@HMGA2!0.85!29.65!HMGA2;;chr3:137483141..137483162,+!p1@SOX14!0.85!6.06!SOX14;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.84!23.72!HNRPK;;chr17:41622765..41622821,-!p2@ETV4!0.84!9.34!ETV4;;chr7:96634878..96634900,+!p2@DLX6!0.84!5.93!DLX6;;chr19:54024251..54024305,+!p4@ZNF331!0.83!9.59!ZNF331;;chr11:6947720..6947812,+!p1@ZNF215!0.83!7.57!ZNF215;;chr12:66218003..66218018,+!p9@HMGA2!0.83!7.19!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!0.82!5.55!HMGA2;;chr20:50418128..50418147,-!p2@SALL4!0.82!5.55!SALL4;;chr10:70320115..70320126,+!p3@TET1!0.81!5.43!TET1;;chr13:100638124..100638136,+!p7@ZIC2!0.81!5.43!ZIC2;;chr7:96634908..96634923,+!p4@DLX6!0.81!5.43!DLX6;;chr6:15246200..15246214,+!p2@JARID2!0.80!15.77!JARID2;;chr15:42749722..42749739,-!p2@ZFP106!0.80!9.97!ZFP106;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.20!ETV4;;chr16:51185489..51185501,-!p6@SALL1!0.80!5.30!SALL1;;chrX:129402866..129402880,-!p1@ZNF280C!0.79!32.30!ZNF280C;;chr6:15246217..15246228,+!p3@JARID2!0.79!9.59!JARID2;;chr19:58400372..58400411,-!p1@ZNF814!0.78!28.14!ZNF814;;chr1:247171347..247171366,-!p2@ZNF695!0.76!9.21!ZNF695;;chr12:85673977..85674015,+!p1@ALX1!0.76!4.79!ALX1;;chr14:57277178..57277203,-!p1@OTX2!0.76!4.79!OTX2;;chr8:86089417..86089440,+!p2@E2F5!0.75!9.84!E2F5;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.67!DLX5;;chrX:136650899..136650918,+!p7@ZIC3!0.75!4.67!ZIC3;;chr12:50479109..50479146,+!p2@SMARCD1!0.74!84.28!SMARCD1;;chr2:75937794..75937867,-!p2@GCFC2!0.74!10.72!GCFC2;;chr3:40547505..40547545,+!p2@ZNF620!0.74!7.44!ZNF620;;chr14:55493763..55493824,-!p1@WDHD1!0.73!36.46!WDHD1;;chr16:54320646..54320672,-!p2@IRX3!0.73!7.07!IRX3;;chr3:71355163..71355209,-!p5@FOXP1!0.73!6.31!FOXP1;;chr12:80084768..80084821,-!p2@PAWR!0.72!32.55!PAWR;;chr17:41623692..41623715,-!p1@ETV4!0.72!20.19!ETV4;;chr12:80084167..80084197,-!p5@PAWR!0.72!10.85!PAWR;;chr6:15246261..15246312,+!p1@JARID2!0.71!112.92!JARID2;;chr12:80084737..80084763,-!p3@PAWR!0.71!17.16!PAWR;;chr19:58400344..58400364,-!p2@ZNF814!0.71!6.31!ZNF814;;chr18:56531584..56531646,+!p4@ZNF532!0.71!5.68!ZNF532;;chr22:22874610..22874616,-!p1@ZNF280A!0.71!4.16!ZNF280A;;chr3:24536231..24536249,-!p4@THRB!0.71!4.16!THRB;;chr19:23433144..23433204,-!p1@ZNF724P!0.70!20.44!ZNF724P;;chr10:97889464..97889494,+!p3@ZNF518A!0.70!8.07!ZNF518A;;chr3:141747441..141747452,-!p4@TFDP2!0.70!5.80!TFDP2;;chr5:124082580..124082603,-!p4@ZNF608!0.70!4.67!ZNF608;;chr6:10412576..10412599,-!p5@TFAP2A!0.70!4.04!TFAP2A;;chr19:47523058..47523114,+!p1@NPAS1!0.70!4.04!NPAS1;;chr17:46132044..46132080,+!p4@NFE2L1!0.70!4.04!NFE2L1;;chr1:204042233..204042249,+!p1@SOX13!0.69!28.14!SOX13;;chr3:44626446..44626477,+!p1@ZNF660!0.69!7.57!ZNF660;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.69!5.80!TGIF2;;chr15:76629123..76629151,+!p1@ISL2!0.69!4.42!ISL2;;chr2:88752231..88752245,-!p2@FOXI3!0.69!3.91!FOXI3;;chr8:128428066..128428078,+!p1@POU5F1B!0.69!3.91!POU5F1B;;chr5:124082322..124082364,-!p1@ZNF608!0.68!10.60!ZNF608;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.69!PAWR;;chr12:66218469..66218477,+!p16@HMGA2!0.68!3.78!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!0.68!3.78!FOXG1;;chr3:147111231..147111281,+!p3@ZIC1!0.68!3.78!ZIC1;;chr16:54964899..54964914,+!p2@IRX5!0.68!3.78!IRX5;;chr19:926001..926046,+!p1@ARID3A!0.67!14.26!ARID3A;;chr2:16080635..16080650,+!p4@MYCN!0.67!3.66!MYCN;;chr13:95364761..95364780,-!p2@SOX21!0.67!3.66!SOX21;;chr5:124082470..124082483,-!p8@ZNF608!0.67!3.66!ZNF608;;chr19:21264991..21265026,+!p1@ZNF714!0.66!27.13!ZNF714;;chr12:51566562..51566584,-!p2@TFCP2!0.66!11.35!TFCP2;;chr19:925727..925784,+!p3@ARID3A!0.66!8.33!ARID3A;;chr20:45142154..45142227,-!p1@ZNF334!0.66!7.82!ZNF334;;chr12:66358080..66358094,+!p15@HMGA2!0.66!3.53!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!0.65!122.51!HMGA1;;chr8:145669791..145669834,-!p1@TONSL!0.65!11.35!TONSL;;chr19:45579725..45579743,-!p1@ZNF296!0.64!17.54!ZNF296;;chr19:21265028..21265052,+!p2@ZNF714!0.64!6.56!ZNF714;;chr6:15245797..15245818,+!p8@JARID2!0.64!4.29!JARID2;;chr5:2751785..2751808,-!p2@IRX2!0.64!3.41!IRX2;;chr19:54024313..54024361,+!p7@ZNF331!0.64!3.41!ZNF331;;chr2:85198231..85198305,+!p1@KCMF1!0.63!50.85!KCMF1;;chr2:239148671..239148686,-!p1@HES6!0.63!13.75!HES6;;chr10:44070016..44070069,-!p1@ZNF239!0.63!11.23!ZNF239;;chr8:86089369..86089408,+!p1@E2F5!0.63!9.97!E2F5;;chr9:126773880..126773895,+!p2@LHX2!0.63!3.28!LHX2;;chr10:126138597..126138612,-!p1@NKX1-2!0.63!3.28!NKX1-2;;chr12:56414795..56414836,+!p4@IKZF4!0.63!3.28!IKZF4;;chr13:100634088..100634099,+!p5@ZIC2!0.63!3.28!ZIC2;;chr12:2986206..2986258,-!p2@FOXM1!0.62!22.33!FOXM1;;chr7:64363638..64363667,+!p1@ZNF273!0.62!18.80!ZNF273;;chr12:57400261..57400344,-!p1@ZBTB39!0.62!17.41!ZBTB39;;chr6:20402102..20402152,+!p1@E2F3!0.62!15.01!E2F3;;chr22:22863052..22863133,-!p1@ZNF280B!0.62!9.46!ZNF280B;;chr15:37390850..37390909,-!p3@MEIS2!0.62!6.8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100!0.19!11.86!ZNF100;;chr2:208394627..208394655,+!p2@CREB1!0.19!11.10!CREB1;;chr19:2841459..2841490,+!p1@ZNF555!0.19!6.81!ZNF555;;chr19:11849700..11849803,-!p1@ZNF823!0.19!6.06!ZNF823;;chr3:44596679..44596726,+!p1@ZNF167!0.19!5.43!ZNF167;;chr19:2944907..2944981,-!p1@ZNF77!0.19!5.17!ZNF77;;chr9:117160738..117160782,-!p2@AKNA!0.19!5.05!AKNA;;chr7:21467674..21467727,+!p1@SP4!0.19!4.79!SP4;;chr3:185826764..185826803,-!p2@ETV5!0.19!4.54!ETV5;;chrX:46404811..46404869,-!p1@ZNF674!0.19!4.42!ZNF674;;chr9:129622904..129622956,+!p1@ZBTB34!0.19!4.16!ZBTB34;;chr22:20748434..20748455,+!p1@ZNF74!0.19!3.66!ZNF74;;chrX:24167548..24167617,+!p2@ZFX!0.19!3.41!ZFX;;chr19:8942962..8942987,-!p1@ZNF558!0.19!3.03!ZNF558;;chr19:52430697..52430749,+!p1@ZNF613!0.19!2.52!ZNF613;;chr19:58326246..58326262,-!p2@ZNF552!0.19!2.52!ZNF552;;chr7:137563945..137564001,-!p6@CREB3L2!0.19!2.52!CREB3L2;;chr1:91487836..91487854,-!p3@ZNF644!0.19!2.40!ZNF644;;chr7:99070527..99070542,+!p2@ZNF789!0.19!2.27!ZNF789;;chr12:56401268..56401305,+!p1@IKZF4!0.19!2.14!IKZF4;;chr16:3285119..3285133,-!p2@ZNF200!0.19!2.02!ZNF200;;chr19:19617430..19617443,+!p9@GATAD2A!0.19!2.02!GATAD2A;;chr8:123793959..123793977,+!p4@ZHX2!0.19!1.89!ZHX2;;chr20:32274150..32274166,-!p2@E2F1!0.19!1.77!E2F1;;chr16:30418894..30418909,+!p2@ZNF771!0.19!1.51!ZNF771;;chr18:47814010..47814021,-!p3@CXXC1!0.19!1.51!CXXC1;;chr8:67525524..67525543,-!p3@MYBL1!0.19!1.51!MYBL1;;chr7:64023410..64023428,-!p2@ZNF680!0.19!1.39!ZNF680;;chr1:164528911..164528940,+!p7@PBX1!0.19!1.26!PBX1;;chr12:53848549..53848582,+!p9@PCBP2!0.19!1.26!PCBP2;;chr18:77867177..77867197,+!p3@ADNP2!0.19!1.26!ADNP2;;chr19:49140595..49140607,-!p3@DBP!0.19!1.14!DBP;;chr20:35201857..35201882,+!p4@TGIF2!0.19!1.14!TGIF2;;chr1:164528297..164528309,+!p9@PBX1!0.19!1.01!PBX1;;chr19:13213704..13213726,-!p3@LYL1!0.19!1.01!LYL1;;chr18:45457558..45457570,-!p9@SMAD2!0.19!0.88!SMAD2;;chr7:14029312..14029325,-!p4@ETV1!0.19!0.88!ETV1;;chr3:141868230..141868250,-!p6@TFDP2!0.19!0.88!TFDP2;;chr11:19262486..19262512,-!p4@E2F8!0.19!0.88!E2F8;;chr12:7077134..7077154,-!p3@PHB2!0.19!0.88!PHB2;;chr18:3447572..3447603,+!p17@TGIF1!0.19!0.76!TGIF1;;chr22:35653468..35653501,+!p1@HMGXB4!0.18!34.19!HMGXB4;;chr17:73780879..73780963,+!p1@UNK!0.18!22.84!UNK;;chr10:38299546..38299686,+!p1@ZNF33A!0.18!19.30!ZNF33A;;chrX:128657457..128657475,-!p1@SMARCA1!0.18!15.39!SMARCA1;;chr19:9695195..9695221,-!p2@ZNF121!0.18!15.14!ZNF121;;chr11:118992269..118992334,+!p1@HINFP!0.18!10.98!HINFP;;chr7:148959269..148959326,+!p1@ZNF783!0.18!10.47!ZNF783;;chr1:44679113..44679152,+!p1@DMAP1!0.18!10.35!DMAP1;;chr13:41240717..41240735,-!p2@FOXO1!0.18!8.71!FOXO1;;chr22:24093267..24093327,-!p1@ZNF70!0.18!8.58!ZNF70;;chr19:50529247..50529296,+!p1@ZNF473!0.18!8.20!ZNF473;;chr10:51572408..51572454,+!p3@NCOA4!0.18!7.32!NCOA4;;chr19:9434841..9434886,+!p1@ZNF559!0.18!6.18!ZNF559;;chr16:3285144..3285191,-!p1@ZNF200!0.18!5.93!ZNF200;;chr18:53257027..53257052,-!p3@TCF4!0.18!4.67!TCF4;;chr19:23869970..23869991,-!p1@ZNF675!0.18!4.42!ZNF675;;chr2:85197924..85197955,+!p3@KCMF1!0.18!4.29!KCMF1;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.18!2.27!ZNF285;;chr8:42698494..42698507,-!p3@THAP1!0.18!1.77!THAP1;;chr18:3451584..3451606,+!p12@TGIF1!0.18!1.51!TGIF1;;chr6:45389835..45389861,+!p7@RUNX2!0.18!1.39!RUNX2;;chr8:60031682..60031710,-!p2@TOX!0.18!1.39!TOX;;chr12:6798731..6798751,-!p4@ZNF384!0.18!1.26!ZNF384;;chr3:71632894..71632909,-!p17@FOXP1!0.18!1.14!FOXP1;;chr6:168227611..168227624,+!p2@MLLT4!0.18!1.14!MLLT4;;chr11:6947647..6947698,+!p2@ZNF215!0.18!1.01!ZNF215;;chr12:19593515..19593573,+!p9@AEBP2!0.18!1.01!AEBP2;;chr12:49413577..49413581,-!p5@MLL2!0.18!1.01!MLL2;; | |expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.30!200.23!SOX2;;chr20:31350184..31350200,+!p1@DNMT3B!1.95!178.53!DNMT3B;;chrX:136648279..136648295,+!p1@ZIC3!1.91!79.48!ZIC3;;chr8:70983476..70983493,-!p1@PRDM14!1.90!78.60!PRDM14;;chr13:100634031..100634045,+!p1@ZIC2!1.86!71.79!ZIC2;;chr6:31138439..31138475,-!p1@POU5F1!1.85!70.15!POU5F1;;chr6:137815524..137815537,-!p1@OLIG3!1.84!68.76!OLIG3;;chrX:136648643..136648711,+!p2@ZIC3!1.80!62.20!ZIC3;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!55.13!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.66!44.41!TFAP2A;;chr3:181429741..181429767,+!p2@SOX2!1.64!42.90!SOX2;;chr14:57272369..57272391,-!p2@OTX2!1.61!39.36!OTX2;;chr1:6304233..6304243,+!p1@HES3!1.57!36.08!HES3;;chr13:100623375..100623425,-!p1@ZIC5!1.52!32.30!ZIC5;;chr2:16080659..16080685,+!p1@MYCN!1.51!31.16!MYCN;;chr20:50418972..50419029,-!p1@SALL4!1.48!29.27!SALL4;;chrX:136648297..136648319,+!p3@ZIC3!1.48!28.89!ZIC3;;chrX:139587228..139587234,-!p1@SOX3!1.46!27.76!SOX3;;chr8:70983443..70983460,-!p2@PRDM14!1.45!27.50!PRDM14;;chr7:96654133..96654150,-!p1@DLX5!1.43!25.74!DLX5;;chr9:127358120..127358170,-!p3@NR6A1!1.40!24.10!NR6A1;;chr2:237077022..237077038,-!p1@GBX2!1.39!23.47!GBX2;;chr13:100634004..100634025,+!p2@ZIC2!1.37!22.33!ZIC2;;chr2:25475120..25475176,-!p2@DNMT3A!1.36!29.40!DNMT3A;;chr12:66218183..66218209,+!p4@HMGA2!1.34!39.49!HMGA2;;chr8:145701192..145701241,-!p1@FOXH1!1.34!20.94!FOXH1;;chr9:127533519..127533573,-!p2@NR6A1!1.33!24.73!NR6A1;;chrX:136648807..136648822,+!p8@ZIC3!1.33!20.57!ZIC3;;chrX:136648753..136648767,+!p5@ZIC3!1.32!19.93!ZIC3;;chr11:63684602..63684664,-!p1@RCOR2!1.30!37.22!RCOR2;;chr8:70983506..70983522,-!p3@PRDM14!1.29!18.67!PRDM14;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.29!18.42!ZBED1;;chr6:10412600..10412637,-!p1@TFAP2A!1.28!29.52!TFAP2A;;chr2:16081912..16081931,+!p2@MYCN!1.28!18.17!MYCN;;chr2:237076992..237077008,-!p2@GBX2!1.28!18.04!GBX2;;chr10:70320074..70320106,+!p1@TET1!1.27!35.20!TET1;;chr20:50419055..50419066,-!p3@SALL4!1.24!16.40!SALL4;;chrX:136648768..136648781,+!p6@ZIC3!1.23!15.90!ZIC3;;chr12:66218255..66218304,+!p3@HMGA2!1.22!41.38!HMGA2;;chr13:100634130..100634143,+!p3@ZIC2!1.21!15.14!ZIC2;;chr20:55204351..55204377,+!p1@TFAP2C!1.19!18.29!TFAP2C;;chr16:51185363..51185381,-!p4@SALL1!1.19!14.51!SALL1;;chr16:51185573..51185593,-!p3@SALL1!1.19!14.38!SALL1;;chr6:19837592..19837621,+!p1@ID4!1.18!85.04!ID4;;chr15:74833584..74833626,+!p1@ARID3B!1.17!31.67!ARID3B;;chr2:223163706..223163730,-!p1@PAX3!1.17!13.75!PAX3;;chr16:3149278..3149305,-!p1@ZSCAN10!1.17!13.63!ZSCAN10;;chr1:164528687..164528711,+!p6@PBX1!1.16!15.52!PBX1;;chr2:16082155..16082169,+!p3@MYCN!1.15!13.12!MYCN;;chr9:114287433..114287513,+!p1@ZNF483!1.13!32.30!ZNF483;;chr13:95364784..95364806,-!p1@SOX21!1.12!12.24!SOX21;;chr14:90085820..90085840,-!p6@FOXN3!1.11!11.86!FOXN3;;chr9:127533582..127533615,-!p1@NR6A1!1.10!17.28!NR6A1;;chr8:86089627..86089653,+!p3@E2F5!1.10!13.25!E2F5;;chr2:25475094..25475112,-!p3@DNMT3A!1.10!11.48!DNMT3A;;chr12:66218836..66218888,+!p1@HMGA2!1.09!106.11!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.09!16.65!HMGA2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.08!106.99!ZNF595;;chrX:136648735..136648747,+!p9@ZIC3!1.08!11.10!ZIC3;;chr5:2751762..2751784,-!p1@IRX2!1.08!11.10!IRX2;;chr12:7941989..7942014,+!p1@NANOG!1.05!10.09!NANOG;;chr12:66218152..66218174,+!p10@HMGA2!1.03!10.47!HMGA2;;chr2:85360499..85360598,+!p1@TCF7L1!1.02!53.62!TCF7L1;;chr14:21994337..21994442,-!p1@SALL2!1.02!26.62!SALL2;;chr13:100638100..100638115,+!p4@ZIC2!1.02!9.59!ZIC2;;chr12:3068544..3068597,+!p1@TEAD4!1.01!56.90!TEAD4;;chr17:41623009..41623053,-!p4@ETV4!1.01!15.01!ETV4;;chr12:66218378..66218401,+!p6@HMGA2!1.00!14.26!HMGA2;;chr20:42295713..42295738,+!p2@MYBL2!0.99!53.49!MYBL2;;chr16:51185318..51185348,-!p2@SALL1!0.98!8.58!SALL1;;chr16:29818199..29818216,+!p11@MAZ!0.97!13.75!MAZ;;chr10:114710098..114710130,+!p2@TCF7L2!0.95!61.06!TCF7L2;;chr9:126774018..126774055,+!p1@LHX2!0.95!7.95!LHX2;;chr13:72441074..72441172,-!p2@DACH1!0.95!7.82!DACH1;;chr5:134369905..134369972,-!p1@PITX1!0.93!11.61!PITX1;;chr6:34204672..34204692,+!p1@HMGA1!0.92!866.64!HMGA1;;chr7:42276822..42276895,-!p2@GLI3!0.92!22.84!GLI3;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.45!TFAP2A;;chr8:70983462..70983471,-!p4@PRDM14!0.92!7.32!PRDM14;;chr12:80084303..80084332,-!p1@PAWR!0.91!44.03!PAWR;;chr15:74833547..74833567,+!p2@ARID3B!0.91!10.22!ARID3B;;chr6:10417399..10417415,-!p32@TFAP2A!0.91!7.07!TFAP2A;;chr2:42795745..42795824,+!p1@MTA3!0.90!66.62!MTA3;;chr12:66218420..66218439,+!p12@HMGA2!0.90!6.94!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.89!15.27!SOHLH2;;chr12:66218443..66218461,+!p8@HMGA2!0.89!8.71!HMGA2;;chr19:46800289..46800327,+!p2@HIF3A!0.89!6.69!HIF3A;;chr6:10417454..10417460,-!p40@TFAP2A!0.88!6.56!TFAP2A;;chr8:145701166..145701187,-!p2@FOXH1!0.88!6.56!FOXH1;;chr2:88752207..88752218,-!p1@FOXI3!0.88!6.56!FOXI3;;chr20:42295745..42295765,+!p1@MYBL2!0.87!111.91!MYBL2;;chrX:136648554..136648576,+!p4@ZIC3!0.87!6.43!ZIC3;;chr16:54320675..54320715,-!p1@IRX3!0.86!14.13!IRX3;;chr18:56530136..56530199,+!p3@ZNF532!0.86!9.71!ZNF532;;chr7:96635178..96635181,+!p1@DLX6!0.86!6.18!DLX6;;chr12:66218598..66218645,+!p2@HMGA2!0.85!29.65!HMGA2;;chr3:137483141..137483162,+!p1@SOX14!0.85!6.06!SOX14;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.84!23.72!HNRPK;;chr17:41622765..41622821,-!p2@ETV4!0.84!9.34!ETV4;;chr7:96634878..96634900,+!p2@DLX6!0.84!5.93!DLX6;;chr19:54024251..54024305,+!p4@ZNF331!0.83!9.59!ZNF331;;chr11:6947720..6947812,+!p1@ZNF215!0.83!7.57!ZNF215;;chr12:66218003..66218018,+!p9@HMGA2!0.83!7.19!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!0.82!5.55!HMGA2;;chr20:50418128..50418147,-!p2@SALL4!0.82!5.55!SALL4;;chr10:70320115..70320126,+!p3@TET1!0.81!5.43!TET1;;chr13:100638124..100638136,+!p7@ZIC2!0.81!5.43!ZIC2;;chr7:96634908..96634923,+!p4@DLX6!0.81!5.43!DLX6;;chr6:15246200..15246214,+!p2@JARID2!0.80!15.77!JARID2;;chr15:42749722..42749739,-!p2@ZFP106!0.80!9.97!ZFP106;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.20!ETV4;;chr16:51185489..51185501,-!p6@SALL1!0.80!5.30!SALL1;;chrX:129402866..129402880,-!p1@ZNF280C!0.79!32.30!ZNF280C;;chr6:15246217..15246228,+!p3@JARID2!0.79!9.59!JARID2;;chr19:58400372..58400411,-!p1@ZNF814!0.78!28.14!ZNF814;;chr1:247171347..247171366,-!p2@ZNF695!0.76!9.21!ZNF695;;chr12:85673977..85674015,+!p1@ALX1!0.76!4.79!ALX1;;chr14:57277178..57277203,-!p1@OTX2!0.76!4.79!OTX2;;chr8:86089417..86089440,+!p2@E2F5!0.75!9.84!E2F5;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.67!DLX5;;chrX:136650899..136650918,+!p7@ZIC3!0.75!4.67!ZIC3;;chr12:50479109..50479146,+!p2@SMARCD1!0.74!84.28!SMARCD1;;chr2:75937794..75937867,-!p2@GCFC2!0.74!10.72!GCFC2;;chr3:40547505..40547545,+!p2@ZNF620!0.74!7.44!ZNF620;;chr14:55493763..55493824,-!p1@WDHD1!0.73!36.46!WDHD1;;chr16:54320646..54320672,-!p2@IRX3!0.73!7.07!IRX3;;chr3:71355163..71355209,-!p5@FOXP1!0.73!6.31!FOXP1;;chr12:80084768..80084821,-!p2@PAWR!0.72!32.55!PAWR;;chr17:41623692..41623715,-!p1@ETV4!0.72!20.19!ETV4;;chr12:80084167..80084197,-!p5@PAWR!0.72!10.85!PAWR;;chr6:15246261..15246312,+!p1@JARID2!0.71!112.92!JARID2;;chr12:80084737..80084763,-!p3@PAWR!0.71!17.16!PAWR;;chr19:58400344..58400364,-!p2@ZNF814!0.71!6.31!ZNF814;;chr18:56531584..56531646,+!p4@ZNF532!0.71!5.68!ZNF532;;chr22:22874610..22874616,-!p1@ZNF280A!0.71!4.16!ZNF280A;;chr3:24536231..24536249,-!p4@THRB!0.71!4.16!THRB;;chr19:23433144..23433204,-!p1@ZNF724P!0.70!20.44!ZNF724P;;chr10:97889464..97889494,+!p3@ZNF518A!0.70!8.07!ZNF518A;;chr3:141747441..141747452,-!p4@TFDP2!0.70!5.80!TFDP2;;chr5:124082580..124082603,-!p4@ZNF608!0.70!4.67!ZNF608;;chr6:10412576..10412599,-!p5@TFAP2A!0.70!4.04!TFAP2A;;chr19:47523058..47523114,+!p1@NPAS1!0.70!4.04!NPAS1;;chr17:46132044..46132080,+!p4@NFE2L1!0.70!4.04!NFE2L1;;chr1:204042233..204042249,+!p1@SOX13!0.69!28.14!SOX13;;chr3:44626446..44626477,+!p1@ZNF660!0.69!7.57!ZNF660;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.69!5.80!TGIF2;;chr15:76629123..76629151,+!p1@ISL2!0.69!4.42!ISL2;;chr2:88752231..88752245,-!p2@FOXI3!0.69!3.91!FOXI3;;chr8:128428066..128428078,+!p1@POU5F1B!0.69!3.91!POU5F1B;;chr5:124082322..124082364,-!p1@ZNF608!0.68!10.60!ZNF608;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.69!PAWR;;chr12:66218469..66218477,+!p16@HMGA2!0.68!3.78!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!0.68!3.78!FOXG1;;chr3:147111231..147111281,+!p3@ZIC1!0.68!3.78!ZIC1;;chr16:54964899..54964914,+!p2@IRX5!0.68!3.78!IRX5;;chr19:926001..926046,+!p1@ARID3A!0.67!14.26!ARID3A;;chr2:16080635..16080650,+!p4@MYCN!0.67!3.66!MYCN;;chr13:95364761..95364780,-!p2@SOX21!0.67!3.66!SOX21;;chr5:124082470..124082483,-!p8@ZNF608!0.67!3.66!ZNF608;;chr19:21264991..21265026,+!p1@ZNF714!0.66!27.13!ZNF714;;chr12:51566562..51566584,-!p2@TFCP2!0.66!11.35!TFCP2;;chr19:925727..925784,+!p3@ARID3A!0.66!8.33!ARID3A;;chr20:45142154..45142227,-!p1@ZNF334!0.66!7.82!ZNF334;;chr12:66358080..66358094,+!p15@HMGA2!0.66!3.53!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!0.65!122.51!HMGA1;;chr8:145669791..145669834,-!p1@TONSL!0.65!11.35!TONSL;;chr19:45579725..45579743,-!p1@ZNF296!0.64!17.54!ZNF296;;chr19:21265028..21265052,+!p2@ZNF714!0.64!6.56!ZNF714;;chr6:15245797..15245818,+!p8@JARID2!0.64!4.29!JARID2;;chr5:2751785..2751808,-!p2@IRX2!0.64!3.41!IRX2;;chr19:54024313..54024361,+!p7@ZNF331!0.64!3.41!ZNF331;;chr2:85198231..85198305,+!p1@KCMF1!0.63!50.85!KCMF1;;chr2:239148671..239148686,-!p1@HES6!0.63!13.75!HES6;;chr10:44070016..44070069,-!p1@ZNF239!0.63!11.23!ZNF239;;chr8:86089369..86089408,+!p1@E2F5!0.63!9.97!E2F5;;chr9:126773880..126773895,+!p2@LHX2!0.63!3.28!LHX2;;chr10:126138597..126138612,-!p1@NKX1-2!0.63!3.28!NKX1-2;;chr12:56414795..56414836,+!p4@IKZF4!0.63!3.28!IKZF4;;chr13:100634088..100634099,+!p5@ZIC2!0.63!3.28!ZIC2;;chr12:2986206..2986258,-!p2@FOXM1!0.62!22.33!FOXM1;;chr7:64363638..64363667,+!p1@ZNF273!0.62!18.80!ZNF273;;chr12:57400261..57400344,-!p1@ZBTB39!0.62!17.41!ZBTB39;;chr6:20402102..20402152,+!p1@E2F3!0.62!15.01!E2F3;;chr22:22863052..22863133,-!p1@ZNF280B!0.62!9.46!ZNF280B;;chr15:37390850..37390909,-!p3@MEIS2!0.62!6.8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100!0.19!11.86!ZNF100;;chr2:208394627..208394655,+!p2@CREB1!0.19!11.10!CREB1;;chr19:2841459..2841490,+!p1@ZNF555!0.19!6.81!ZNF555;;chr19:11849700..11849803,-!p1@ZNF823!0.19!6.06!ZNF823;;chr3:44596679..44596726,+!p1@ZNF167!0.19!5.43!ZNF167;;chr19:2944907..2944981,-!p1@ZNF77!0.19!5.17!ZNF77;;chr9:117160738..117160782,-!p2@AKNA!0.19!5.05!AKNA;;chr7:21467674..21467727,+!p1@SP4!0.19!4.79!SP4;;chr3:185826764..185826803,-!p2@ETV5!0.19!4.54!ETV5;;chrX:46404811..46404869,-!p1@ZNF674!0.19!4.42!ZNF674;;chr9:129622904..129622956,+!p1@ZBTB34!0.19!4.16!ZBTB34;;chr22:20748434..20748455,+!p1@ZNF74!0.19!3.66!ZNF74;;chrX:24167548..24167617,+!p2@ZFX!0.19!3.41!ZFX;;chr19:8942962..8942987,-!p1@ZNF558!0.19!3.03!ZNF558;;chr19:52430697..52430749,+!p1@ZNF613!0.19!2.52!ZNF613;;chr19:58326246..58326262,-!p2@ZNF552!0.19!2.52!ZNF552;;chr7:137563945..137564001,-!p6@CREB3L2!0.19!2.52!CREB3L2;;chr1:91487836..91487854,-!p3@ZNF644!0.19!2.40!ZNF644;;chr7:99070527..99070542,+!p2@ZNF789!0.19!2.27!ZNF789;;chr12:56401268..56401305,+!p1@IKZF4!0.19!2.14!IKZF4;;chr16:3285119..3285133,-!p2@ZNF200!0.19!2.02!ZNF200;;chr19:19617430..19617443,+!p9@GATAD2A!0.19!2.02!GATAD2A;;chr8:123793959..123793977,+!p4@ZHX2!0.19!1.89!ZHX2;;chr20:32274150..32274166,-!p2@E2F1!0.19!1.77!E2F1;;chr16:30418894..30418909,+!p2@ZNF771!0.19!1.51!ZNF771;;chr18:47814010..47814021,-!p3@CXXC1!0.19!1.51!CXXC1;;chr8:67525524..67525543,-!p3@MYBL1!0.19!1.51!MYBL1;;chr7:64023410..64023428,-!p2@ZNF680!0.19!1.39!ZNF680;;chr1:164528911..164528940,+!p7@PBX1!0.19!1.26!PBX1;;chr12:53848549..53848582,+!p9@PCBP2!0.19!1.26!PCBP2;;chr18:77867177..77867197,+!p3@ADNP2!0.19!1.26!ADNP2;;chr19:49140595..49140607,-!p3@DBP!0.19!1.14!DBP;;chr20:35201857..35201882,+!p4@TGIF2!0.19!1.14!TGIF2;;chr1:164528297..164528309,+!p9@PBX1!0.19!1.01!PBX1;;chr19:13213704..13213726,-!p3@LYL1!0.19!1.01!LYL1;;chr18:45457558..45457570,-!p9@SMAD2!0.19!0.88!SMAD2;;chr7:14029312..14029325,-!p4@ETV1!0.19!0.88!ETV1;;chr3:141868230..141868250,-!p6@TFDP2!0.19!0.88!TFDP2;;chr11:19262486..19262512,-!p4@E2F8!0.19!0.88!E2F8;;chr12:7077134..7077154,-!p3@PHB2!0.19!0.88!PHB2;;chr18:3447572..3447603,+!p17@TGIF1!0.19!0.76!TGIF1;;chr22:35653468..35653501,+!p1@HMGXB4!0.18!34.19!HMGXB4;;chr17:73780879..73780963,+!p1@UNK!0.18!22.84!UNK;;chr10:38299546..38299686,+!p1@ZNF33A!0.18!19.30!ZNF33A;;chrX:128657457..128657475,-!p1@SMARCA1!0.18!15.39!SMARCA1;;chr19:9695195..9695221,-!p2@ZNF121!0.18!15.14!ZNF121;;chr11:118992269..118992334,+!p1@HINFP!0.18!10.98!HINFP;;chr7:148959269..148959326,+!p1@ZNF783!0.18!10.47!ZNF783;;chr1:44679113..44679152,+!p1@DMAP1!0.18!10.35!DMAP1;;chr13:41240717..41240735,-!p2@FOXO1!0.18!8.71!FOXO1;;chr22:24093267..24093327,-!p1@ZNF70!0.18!8.58!ZNF70;;chr19:50529247..50529296,+!p1@ZNF473!0.18!8.20!ZNF473;;chr10:51572408..51572454,+!p3@NCOA4!0.18!7.32!NCOA4;;chr19:9434841..9434886,+!p1@ZNF559!0.18!6.18!ZNF559;;chr16:3285144..3285191,-!p1@ZNF200!0.18!5.93!ZNF200;;chr18:53257027..53257052,-!p3@TCF4!0.18!4.67!TCF4;;chr19:23869970..23869991,-!p1@ZNF675!0.18!4.42!ZNF675;;chr2:85197924..85197955,+!p3@KCMF1!0.18!4.29!KCMF1;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.18!2.27!ZNF285;;chr8:42698494..42698507,-!p3@THAP1!0.18!1.77!THAP1;;chr18:3451584..3451606,+!p12@TGIF1!0.18!1.51!TGIF1;;chr6:45389835..45389861,+!p7@RUNX2!0.18!1.39!RUNX2;;chr8:60031682..60031710,-!p2@TOX!0.18!1.39!TOX;;chr12:6798731..6798751,-!p4@ZNF384!0.18!1.26!ZNF384;;chr3:71632894..71632909,-!p17@FOXP1!0.18!1.14!FOXP1;;chr6:168227611..168227624,+!p2@MLLT4!0.18!1.14!MLLT4;;chr11:6947647..6947698,+!p2@ZNF215!0.18!1.01!ZNF215;;chr12:19593515..19593573,+!p9@AEBP2!0.18!1.01!AEBP2;;chr12:49413577..49413581,-!p5@MLL2!0.18!1.01!MLL2;; | ||
|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316 | |||
|fonse_cell_line=FF:0100977,FF:0101120 | |fonse_cell_line=FF:0100977,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100977,FF:0101120 | |fonse_cell_line_closure=FF:0100977,FF:0101120 | ||
Line 37: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10807-111A6 | |id=FF:10807-111A6 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100306;;FF:0101591 | |is_a=EFO:0002091;;FF:0000210;;FF:0100306;;FF:0101591 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11890 | |||
|library_id_phase_based=2:CNhs11890 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10807 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10807 | |||
|name=teratocarcinoma cell line:PA-1 | |name=teratocarcinoma cell line:PA-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11890,LSID830,release010,COMPLETED | |profile_hcage=CNhs11890,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 78: | ||
|rna_weight_ug=30.18897 | |rna_weight_ug=30.18897 | ||
|sample_age=12 | |sample_age=12 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb9061 | |sample_cell_catalog=jcrb9061 | ||
|sample_cell_line=PA-1 | |sample_cell_line=PA-1 | ||
Line 81: | Line 100: | ||
|top_motifs=OCT4_SOX2{dimer}:2.69910673111;GFI1:1.88333612329;PBX1:1.87246816369;TFDP1:1.77369579521;NFY{A,B,C}:1.55037134511;VSX1,2:1.47358043316;POU2F1..3:1.44558522268;RBPJ:1.37512855791;SOX{8,9,10}:1.35009472958;ONECUT1,2:1.27596273379;E2F1..5:1.22884197522;TOPORS:1.19400558586;CDX1,2,4:1.15889205593;T:1.13893432649;ALX1:1.10196035272;ZNF143:1.0672418448;PITX1..3:1.02502158297;SOX17:1.0094150044;FOX{I1,J2}:0.999907858953;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.962383315256;PAX8:0.93615416275;AIRE:0.865346109135;PAX4:0.864482170022;POU1F1:0.832577266037;FOXP1:0.830887492426;HOX{A6,A7,B6,B7}:0.830552190848;ZBTB16:0.791710329087;NKX2-3_NKX2-5:0.778869339685;MYB:0.776431642505;CUX2:0.773401635857;SP1:0.754358691194;HOX{A4,D4}:0.749135803959;EVI1:0.722572693234;BREu{core}:0.722056118826;FOXQ1:0.718207361387;KLF4:0.706334253331;NRF1:0.703651561997;NANOG:0.693616652579;POU5F1:0.686160982503;HOX{A5,B5}:0.631054887987;IKZF2:0.622697786468;CDC5L:0.598057636274;SOX2:0.561670109718;STAT5{A,B}:0.56155265963;MZF1:0.559855400737;YY1:0.555297653863;LEF1_TCF7_TCF7L1,2:0.511007618179;TEF:0.509004008494;ZNF384:0.480119216378;RORA:0.467238044043;POU3F1..4:0.44680429269;FOXD3:0.44377126008;CRX:0.438836159266;ELK1,4_GABP{A,B1}:0.433242562603;NKX2-1,4:0.373243898928;FOXM1:0.367094539872;PAX1,9:0.328039706362;FOXA2:0.321487343456;GATA4:0.312107578917;MYBL2:0.310467619011;ZFP161:0.307723101244;NKX6-1,2:0.279588355893;GATA6:0.276947792903;XCPE1{core}:0.270352282372;ATF4:0.257164329052;IKZF1:0.255840128895;ADNP_IRX_SIX_ZHX:0.242948428729;CREB1:0.201186816083;UFEwm:0.173744089131;FOXP3:0.152176538436;PATZ1:0.148049308742;HNF4A_NR2F1,2:0.125209067856;HIC1:0.122088087088;TEAD1:0.108470675422;MYOD1:0.0679217666924;HMGA1,2:0.0589023743784;ARID5B:0.0529352792964;SNAI1..3:0.0332050865845;FOXL1:0.0231346372752;TFAP2B:0.0220950667379;ESRRA:0.019455807515;GFI1B:0.0129060260906;PAX3,7:0.0072697902147;LHX3,4:0.00155502611338;RFX1:-0.00387166652716;EN1,2:-0.0302335784679;TP53:-0.03223832428;GTF2I:-0.0395842155219;NR3C1:-0.0529513842336;NKX3-1:-0.0590794952637;PRRX1,2:-0.0592853114557;GCM1,2:-0.0627327164005;ZBTB6:-0.066465267121;MYFfamily:-0.06896611875;MED-1{core}:-0.0789993790452;NFIX:-0.0988868510862;HAND1,2:-0.111953916118;MAZ:-0.112409121595;LMO2:-0.11459767309;NANOG{mouse}:-0.124139022416;MTF1:-0.124880183403;MEF2{A,B,C,D}:-0.163560270499;FOXO1,3,4:-0.171010504828;REST:-0.176912436137;bHLH_family:-0.179501277918;ZNF148:-0.185246741212;HNF1A:-0.190995517432;ZIC1..3:-0.192767436645;NR1H4:-0.207917806615;MTE{core}:-0.214766265432;NKX3-2:-0.215253553899;HOXA9_MEIS1:-0.220241935829;EBF1:-0.252521496301;ATF2:-0.261579417795;DBP:-0.263646615834;SOX5:-0.277344797822;BACH2:-0.279219077371;STAT1,3:-0.281395251787;GTF2A1,2:-0.285867654488;NKX2-2,8:-0.293794366454;TBP:-0.30352076483;FOX{F1,F2,J1}:-0.30396090036;POU6F1:-0.306108584235;EGR1..3:-0.32714053351;HSF1,2:-0.331175400451;PPARG:-0.343593796667;TFAP2{A,C}:-0.370370052219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.381159229764;ZEB1:-0.386948769184;RXR{A,B,G}:-0.390388701319;SREBF1,2:-0.395937306891;HBP1_HMGB_SSRP1_UBTF:-0.401332895646;NFKB1_REL_RELA:-0.408453405769;PDX1:-0.412746078737;FOS_FOS{B,L1}_JUN{B,D}:-0.413220900128;ALX4:-0.417570645829;AHR_ARNT_ARNT2:-0.418723668091;NFE2:-0.427522585436;PRDM1:-0.428805887921;PAX5:-0.429225029529;AR:-0.429945904975;HLF:-0.436599091263;XBP1:-0.438162527392;NFE2L2:-0.451775318197;TFAP4:-0.459061124592;TBX4,5:-0.475723656169;FOXN1:-0.480525501342;SPI1:-0.488654359245;SPIB:-0.521989250288;HIF1A:-0.540945941736;RREB1:-0.555195626673;ELF1,2,4:-0.564957081557;ATF5_CREB3:-0.572486230154;FOSL2:-0.580106952513;SRF:-0.603071977242;TFCP2:-0.624719275027;JUN:-0.62786554718;PAX2:-0.628973877083;RUNX1..3:-0.642515283581;NFE2L1:-0.645833322174;PAX6:-0.649473130877;TGIF1:-0.655296800996;DMAP1_NCOR{1,2}_SMARC:-0.673369658295;RFX2..5_RFXANK_RFXAP:-0.675598789978;NFIL3:-0.686498929605;IRF7:-0.705798185455;GZF1:-0.706828115013;NHLH1,2:-0.715162298952;NR5A1,2:-0.723901660396;CEBPA,B_DDIT3:-0.74312860756;HES1:-0.835362774203;SPZ1:-0.858579749579;ETS1,2:-0.868911314582;BPTF:-0.888949096916;TLX1..3_NFIC{dimer}:-0.910333760046;NFATC1..3:-0.923874206107;FOX{D1,D2}:-0.93035411242;ZNF238:-1.01491809023;TAL1_TCF{3,4,12}:-1.03037511065;STAT2,4,6:-1.05250915503;IRF1,2:-1.14044226767;SMAD1..7,9:-1.14254597918;HMX1:-1.14351652329;ESR1:-1.16185028856;EP300:-1.17573983264;RXRA_VDR{dimer}:-1.25961834563;MAFB:-1.28636147291;TLX2:-1.32622997843;NR6A1:-1.36378560083;ATF6:-1.4668839134;ZNF423:-1.50128844219;GLI1..3:-1.7736787806 | |top_motifs=OCT4_SOX2{dimer}:2.69910673111;GFI1:1.88333612329;PBX1:1.87246816369;TFDP1:1.77369579521;NFY{A,B,C}:1.55037134511;VSX1,2:1.47358043316;POU2F1..3:1.44558522268;RBPJ:1.37512855791;SOX{8,9,10}:1.35009472958;ONECUT1,2:1.27596273379;E2F1..5:1.22884197522;TOPORS:1.19400558586;CDX1,2,4:1.15889205593;T:1.13893432649;ALX1:1.10196035272;ZNF143:1.0672418448;PITX1..3:1.02502158297;SOX17:1.0094150044;FOX{I1,J2}:0.999907858953;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.962383315256;PAX8:0.93615416275;AIRE:0.865346109135;PAX4:0.864482170022;POU1F1:0.832577266037;FOXP1:0.830887492426;HOX{A6,A7,B6,B7}:0.830552190848;ZBTB16:0.791710329087;NKX2-3_NKX2-5:0.778869339685;MYB:0.776431642505;CUX2:0.773401635857;SP1:0.754358691194;HOX{A4,D4}:0.749135803959;EVI1:0.722572693234;BREu{core}:0.722056118826;FOXQ1:0.718207361387;KLF4:0.706334253331;NRF1:0.703651561997;NANOG:0.693616652579;POU5F1:0.686160982503;HOX{A5,B5}:0.631054887987;IKZF2:0.622697786468;CDC5L:0.598057636274;SOX2:0.561670109718;STAT5{A,B}:0.56155265963;MZF1:0.559855400737;YY1:0.555297653863;LEF1_TCF7_TCF7L1,2:0.511007618179;TEF:0.509004008494;ZNF384:0.480119216378;RORA:0.467238044043;POU3F1..4:0.44680429269;FOXD3:0.44377126008;CRX:0.438836159266;ELK1,4_GABP{A,B1}:0.433242562603;NKX2-1,4:0.373243898928;FOXM1:0.367094539872;PAX1,9:0.328039706362;FOXA2:0.321487343456;GATA4:0.312107578917;MYBL2:0.310467619011;ZFP161:0.307723101244;NKX6-1,2:0.279588355893;GATA6:0.276947792903;XCPE1{core}:0.270352282372;ATF4:0.257164329052;IKZF1:0.255840128895;ADNP_IRX_SIX_ZHX:0.242948428729;CREB1:0.201186816083;UFEwm:0.173744089131;FOXP3:0.152176538436;PATZ1:0.148049308742;HNF4A_NR2F1,2:0.125209067856;HIC1:0.122088087088;TEAD1:0.108470675422;MYOD1:0.0679217666924;HMGA1,2:0.0589023743784;ARID5B:0.0529352792964;SNAI1..3:0.0332050865845;FOXL1:0.0231346372752;TFAP2B:0.0220950667379;ESRRA:0.019455807515;GFI1B:0.0129060260906;PAX3,7:0.0072697902147;LHX3,4:0.00155502611338;RFX1:-0.00387166652716;EN1,2:-0.0302335784679;TP53:-0.03223832428;GTF2I:-0.0395842155219;NR3C1:-0.0529513842336;NKX3-1:-0.0590794952637;PRRX1,2:-0.0592853114557;GCM1,2:-0.0627327164005;ZBTB6:-0.066465267121;MYFfamily:-0.06896611875;MED-1{core}:-0.0789993790452;NFIX:-0.0988868510862;HAND1,2:-0.111953916118;MAZ:-0.112409121595;LMO2:-0.11459767309;NANOG{mouse}:-0.124139022416;MTF1:-0.124880183403;MEF2{A,B,C,D}:-0.163560270499;FOXO1,3,4:-0.171010504828;REST:-0.176912436137;bHLH_family:-0.179501277918;ZNF148:-0.185246741212;HNF1A:-0.190995517432;ZIC1..3:-0.192767436645;NR1H4:-0.207917806615;MTE{core}:-0.214766265432;NKX3-2:-0.215253553899;HOXA9_MEIS1:-0.220241935829;EBF1:-0.252521496301;ATF2:-0.261579417795;DBP:-0.263646615834;SOX5:-0.277344797822;BACH2:-0.279219077371;STAT1,3:-0.281395251787;GTF2A1,2:-0.285867654488;NKX2-2,8:-0.293794366454;TBP:-0.30352076483;FOX{F1,F2,J1}:-0.30396090036;POU6F1:-0.306108584235;EGR1..3:-0.32714053351;HSF1,2:-0.331175400451;PPARG:-0.343593796667;TFAP2{A,C}:-0.370370052219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.381159229764;ZEB1:-0.386948769184;RXR{A,B,G}:-0.390388701319;SREBF1,2:-0.395937306891;HBP1_HMGB_SSRP1_UBTF:-0.401332895646;NFKB1_REL_RELA:-0.408453405769;PDX1:-0.412746078737;FOS_FOS{B,L1}_JUN{B,D}:-0.413220900128;ALX4:-0.417570645829;AHR_ARNT_ARNT2:-0.418723668091;NFE2:-0.427522585436;PRDM1:-0.428805887921;PAX5:-0.429225029529;AR:-0.429945904975;HLF:-0.436599091263;XBP1:-0.438162527392;NFE2L2:-0.451775318197;TFAP4:-0.459061124592;TBX4,5:-0.475723656169;FOXN1:-0.480525501342;SPI1:-0.488654359245;SPIB:-0.521989250288;HIF1A:-0.540945941736;RREB1:-0.555195626673;ELF1,2,4:-0.564957081557;ATF5_CREB3:-0.572486230154;FOSL2:-0.580106952513;SRF:-0.603071977242;TFCP2:-0.624719275027;JUN:-0.62786554718;PAX2:-0.628973877083;RUNX1..3:-0.642515283581;NFE2L1:-0.645833322174;PAX6:-0.649473130877;TGIF1:-0.655296800996;DMAP1_NCOR{1,2}_SMARC:-0.673369658295;RFX2..5_RFXANK_RFXAP:-0.675598789978;NFIL3:-0.686498929605;IRF7:-0.705798185455;GZF1:-0.706828115013;NHLH1,2:-0.715162298952;NR5A1,2:-0.723901660396;CEBPA,B_DDIT3:-0.74312860756;HES1:-0.835362774203;SPZ1:-0.858579749579;ETS1,2:-0.868911314582;BPTF:-0.888949096916;TLX1..3_NFIC{dimer}:-0.910333760046;NFATC1..3:-0.923874206107;FOX{D1,D2}:-0.93035411242;ZNF238:-1.01491809023;TAL1_TCF{3,4,12}:-1.03037511065;STAT2,4,6:-1.05250915503;IRF1,2:-1.14044226767;SMAD1..7,9:-1.14254597918;HMX1:-1.14351652329;ESR1:-1.16185028856;EP300:-1.17573983264;RXRA_VDR{dimer}:-1.25961834563;MAFB:-1.28636147291;TLX2:-1.32622997843;NR6A1:-1.36378560083;ATF6:-1.4668839134;ZNF423:-1.50128844219;GLI1..3:-1.7736787806 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10807-111A6;search_select_hide=table117:FF:10807-111A6 | |||
}} | }} |
Latest revision as of 15:06, 3 June 2020
Name: | teratocarcinoma cell line:PA-1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11890 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11890
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11890
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.397 |
10 | 10 | 0.288 |
100 | 100 | 0.644 |
101 | 101 | 0.752 |
102 | 102 | 0.671 |
103 | 103 | 0.162 |
104 | 104 | 0.56 |
105 | 105 | 0.256 |
106 | 106 | 0.0209 |
107 | 107 | 0.752 |
108 | 108 | 0.893 |
109 | 109 | 0.166 |
11 | 11 | 0.269 |
110 | 110 | 0.496 |
111 | 111 | 0.827 |
112 | 112 | 0.00405 |
113 | 113 | 0.0748 |
114 | 114 | 0.0693 |
115 | 115 | 0.874 |
116 | 116 | 0.863 |
117 | 117 | 0.306 |
118 | 118 | 0.851 |
119 | 119 | 0.402 |
12 | 12 | 0.625 |
120 | 120 | 0.632 |
121 | 121 | 0.502 |
122 | 122 | 0.427 |
123 | 123 | 0.542 |
124 | 124 | 0.735 |
125 | 125 | 0.337 |
126 | 126 | 0.675 |
127 | 127 | 0.156 |
128 | 128 | 0.324 |
129 | 129 | 0.325 |
13 | 13 | 0.69 |
130 | 130 | 0.151 |
131 | 131 | 0.604 |
132 | 132 | 0.945 |
133 | 133 | 0.0776 |
134 | 134 | 0.475 |
135 | 135 | 0.0255 |
136 | 136 | 0.0294 |
137 | 137 | 0.126 |
138 | 138 | 0.404 |
139 | 139 | 0.04 |
14 | 14 | 0.738 |
140 | 140 | 0.846 |
141 | 141 | 0.696 |
142 | 142 | 0.731 |
143 | 143 | 0.184 |
144 | 144 | 0.814 |
145 | 145 | 0.748 |
146 | 146 | 0.489 |
147 | 147 | 0.288 |
148 | 148 | 0.0128 |
149 | 149 | 0.0226 |
15 | 15 | 0.303 |
150 | 150 | 0.824 |
151 | 151 | 0.11 |
152 | 152 | 0.255 |
153 | 153 | 0.254 |
154 | 154 | 0.927 |
155 | 155 | 0.913 |
156 | 156 | 0.851 |
157 | 157 | 0.826 |
158 | 158 | 0.149 |
159 | 159 | 0.396 |
16 | 16 | 0.292 |
160 | 160 | 0.118 |
161 | 161 | 0.42 |
162 | 162 | 0.382 |
163 | 163 | 0.464 |
164 | 164 | 0.108 |
165 | 165 | 0.297 |
166 | 166 | 0.569 |
167 | 167 | 0.884 |
168 | 168 | 0.466 |
169 | 169 | 0.0464 |
17 | 17 | 0.234 |
18 | 18 | 0.21 |
19 | 19 | 0.259 |
2 | 2 | 0.203 |
20 | 20 | 0.631 |
21 | 21 | 0.915 |
22 | 22 | 0.118 |
23 | 23 | 0.0206 |
24 | 24 | 0.573 |
25 | 25 | 0.355 |
26 | 26 | 0.975 |
27 | 27 | 0.0461 |
28 | 28 | 0.704 |
29 | 29 | 0.536 |
3 | 3 | 0.288 |
30 | 30 | 0.579 |
31 | 31 | 0.506 |
32 | 32 | 0.00963 |
33 | 33 | 0.86 |
34 | 34 | 0.33 |
35 | 35 | 0.431 |
36 | 36 | 0.128 |
37 | 37 | 0.154 |
38 | 38 | 0.296 |
39 | 39 | 0.515 |
4 | 4 | 0.33 |
40 | 40 | 0.302 |
41 | 41 | 0.245 |
42 | 42 | 0.86 |
43 | 43 | 0.157 |
44 | 44 | 0.999 |
45 | 45 | 0.359 |
46 | 46 | 0.185 |
47 | 47 | 0.896 |
48 | 48 | 0.67 |
49 | 49 | 0.293 |
5 | 5 | 0.403 |
50 | 50 | 0.878 |
51 | 51 | 0.634 |
52 | 52 | 0.455 |
53 | 53 | 0.787 |
54 | 54 | 0.552 |
55 | 55 | 0.0604 |
56 | 56 | 0.491 |
57 | 57 | 0.693 |
58 | 58 | 0.123 |
59 | 59 | 0.106 |
6 | 6 | 0.534 |
60 | 60 | 0.112 |
61 | 61 | 0.903 |
62 | 62 | 0.0658 |
63 | 63 | 0.212 |
64 | 64 | 0.586 |
65 | 65 | 0.0647 |
66 | 66 | 0.00561 |
67 | 67 | 0.306 |
68 | 68 | 0.389 |
69 | 69 | 0.709 |
7 | 7 | 0.837 |
70 | 70 | 0.0344 |
71 | 71 | 0.0535 |
72 | 72 | 0.325 |
73 | 73 | 0.098 |
74 | 74 | 0.633 |
75 | 75 | 0.519 |
76 | 76 | 0.576 |
77 | 77 | 0.0886 |
78 | 78 | 0.771 |
79 | 79 | 0.173 |
8 | 8 | 0.452 |
80 | 80 | 0.158 |
81 | 81 | 0.56 |
82 | 82 | 0.0143 |
83 | 83 | 0.916 |
84 | 84 | 0.785 |
85 | 85 | 0.0337 |
86 | 86 | 0.66 |
87 | 87 | 0.227 |
88 | 88 | 0.452 |
89 | 89 | 0.0242 |
9 | 9 | 0.0524 |
90 | 90 | 0.534 |
91 | 91 | 0.153 |
92 | 92 | 0.0158 |
93 | 93 | 0.879 |
94 | 94 | 0.156 |
95 | 95 | 0.445 |
96 | 96 | 0.178 |
97 | 97 | 0.826 |
98 | 98 | 0.647 |
99 | 99 | 0.909 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11890
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100306 teratocarcinoma cell line sample
FF:0101591 PA-1 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100977 (ovary cell line sample)
0100306 (teratocarcinoma cell line sample)
0100811 (ovary cancer cell line sample)
0101591 (PA-1 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)