FF:11207-116A1: Difference between revisions

Latest revision as of 16:24, 3 June 2020

Name:	Endothelial Cells - Aortic, donor0
Species:	Human (Homo sapiens)
Library ID:	CNhs10837
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	aorta
dev stage	NA
sex	NA
age	NA
cell type	blood vessel endothelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	CA304-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005519

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10837		CAGE		DRX008216		DRR009088

Accession ID Hg19

Library id		BAM		CTSS
CNhs10837		DRZ000513		DRZ001898

Accession ID Hg38

Library id		BAM		CTSS
CNhs10837		DRZ011863		DRZ013248

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10038		download		download		download		download

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005519

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10003.TGACCA		sRNA-Seq		DRX037013		DRR041379

Accession ID Hg19

Library id		BAM		CTSS
SRhi10003.TGACCA		DRZ007021

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.157
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.124
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.379
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.182
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.235
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.195
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0804
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.57
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.32
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0787
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.554
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10837

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.172
MA0003.1	MA0003.1	0.606
MA0004.1	MA0004.1	0.389
MA0006.1	MA0006.1	0.0472
MA0007.1	MA0007.1	0.0852
MA0009.1	MA0009.1	0.462
MA0014.1	MA0014.1	0.751
MA0017.1	MA0017.1	0.895
MA0018.2	MA0018.2	0.00766
MA0019.1	MA0019.1	0.238
MA0024.1	MA0024.1	0.0484
MA0025.1	MA0025.1	0.679
MA0027.1	MA0027.1	0.594
MA0028.1	MA0028.1	0.146
MA0029.1	MA0029.1	0.46
MA0030.1	MA0030.1	0.811
MA0031.1	MA0031.1	0.911
MA0035.2	MA0035.2	0.00386
MA0038.1	MA0038.1	0.0101
MA0039.2	MA0039.2	0.0356
MA0040.1	MA0040.1	0.301
MA0041.1	MA0041.1	0.134
MA0042.1	MA0042.1	0.565
MA0043.1	MA0043.1	6.30138e-4
MA0046.1	MA0046.1	0.605
MA0047.2	MA0047.2	0.223
MA0048.1	MA0048.1	0.0306
MA0050.1	MA0050.1	0.0915
MA0051.1	MA0051.1	0.95
MA0052.1	MA0052.1	0.635
MA0055.1	MA0055.1	4.35004e-4
MA0057.1	MA0057.1	0.368
MA0058.1	MA0058.1	0.478
MA0059.1	MA0059.1	0.515
MA0060.1	MA0060.1	3.19207e-5
MA0061.1	MA0061.1	0.0138
MA0062.2	MA0062.2	0.174
MA0065.2	MA0065.2	0.658
MA0066.1	MA0066.1	0.526
MA0067.1	MA0067.1	0.33
MA0068.1	MA0068.1	0.402
MA0069.1	MA0069.1	0.178
MA0070.1	MA0070.1	0.967
MA0071.1	MA0071.1	0.997
MA0072.1	MA0072.1	0.544
MA0073.1	MA0073.1	0.178
MA0074.1	MA0074.1	0.375
MA0076.1	MA0076.1	0.929
MA0077.1	MA0077.1	1.10068e-6
MA0078.1	MA0078.1	0.0365
MA0079.2	MA0079.2	0.324
MA0080.2	MA0080.2	7.28666e-6
MA0081.1	MA0081.1	0.0763
MA0083.1	MA0083.1	0.124
MA0084.1	MA0084.1	0.188
MA0087.1	MA0087.1	0.0897
MA0088.1	MA0088.1	0.0928
MA0090.1	MA0090.1	0.42
MA0091.1	MA0091.1	0.772
MA0092.1	MA0092.1	0.335
MA0093.1	MA0093.1	0.361
MA0099.2	MA0099.2	7.77459e-22
MA0100.1	MA0100.1	0.821
MA0101.1	MA0101.1	0.99
MA0102.2	MA0102.2	0.00272
MA0103.1	MA0103.1	0.00118
MA0104.2	MA0104.2	0.472
MA0105.1	MA0105.1	0.0346
MA0106.1	MA0106.1	0.00192
MA0107.1	MA0107.1	0.636
MA0108.2	MA0108.2	0.173
MA0111.1	MA0111.1	0.193
MA0112.2	MA0112.2	0.253
MA0113.1	MA0113.1	0.264
MA0114.1	MA0114.1	0.299
MA0115.1	MA0115.1	0.772
MA0116.1	MA0116.1	0.151
MA0117.1	MA0117.1	0.653
MA0119.1	MA0119.1	0.0437
MA0122.1	MA0122.1	0.0376
MA0124.1	MA0124.1	0.43
MA0125.1	MA0125.1	0.575
MA0131.1	MA0131.1	0.385
MA0135.1	MA0135.1	0.859
MA0136.1	MA0136.1	3.41583e-5
MA0137.2	MA0137.2	0.769
MA0138.2	MA0138.2	0.261
MA0139.1	MA0139.1	0.381
MA0140.1	MA0140.1	2.90656e-4
MA0141.1	MA0141.1	0.323
MA0142.1	MA0142.1	0.572
MA0143.1	MA0143.1	0.719
MA0144.1	MA0144.1	0.244
MA0145.1	MA0145.1	0.119
MA0146.1	MA0146.1	0.835
MA0147.1	MA0147.1	0.905
MA0148.1	MA0148.1	0.0645
MA0149.1	MA0149.1	0.0144
MA0150.1	MA0150.1	5.29734e-4
MA0152.1	MA0152.1	0.78
MA0153.1	MA0153.1	0.204
MA0154.1	MA0154.1	0.181
MA0155.1	MA0155.1	0.39
MA0156.1	MA0156.1	1.40585e-8
MA0157.1	MA0157.1	0.717
MA0159.1	MA0159.1	0.721
MA0160.1	MA0160.1	0.603
MA0162.1	MA0162.1	0.13
MA0163.1	MA0163.1	0.0309
MA0164.1	MA0164.1	0.786
MA0258.1	MA0258.1	0.277
MA0259.1	MA0259.1	0.887

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10837

Novel motif	Logo	P-value
1	1	0.724
10	10	0.679
100	100	0.692
101	101	0.0941
102	102	0.871
103	103	0.661
104	104	0.908
105	105	0.95
106	106	0.932
107	107	0.182
108	108	0.972
109	109	0.201
11	11	0.501
110	110	0.0279
111	111	0.859
112	112	0.522
113	113	0.131
114	114	0.796
115	115	0.189
116	116	0.588
117	117	0.568
118	118	0.981
119	119	0.644
12	12	0.268
120	120	0.132
121	121	0.323
122	122	0.452
123	123	0.0247
124	124	0.0518
125	125	0.429
126	126	0.519
127	127	0.803
128	128	0.358
129	129	0.487
13	13	0.257
130	130	0.179
131	131	0.91
132	132	0.938
133	133	0.401
134	134	0.94
135	135	0.239
136	136	0.0517
137	137	0.348
138	138	0.815
139	139	0.215
14	14	0.365
140	140	0.856
141	141	0.475
142	142	0.71
143	143	0.314
144	144	0.403
145	145	0.226
146	146	0.169
147	147	0.541
148	148	0.0169
149	149	0.271
15	15	0.887
150	150	0.178
151	151	0.732
152	152	0.0285
153	153	0.238
154	154	0.857
155	155	0.191
156	156	0.0728
157	157	0.0172
158	158	0.106
159	159	0.427
16	16	0.679
160	160	0.216
161	161	0.0821
162	162	0.334
163	163	0.499
164	164	0.783
165	165	0.599
166	166	0.52
167	167	0.173
168	168	0.219
169	169	0.282
17	17	0.507
18	18	0.758
19	19	0.405
2	2	0.682
20	20	0.244
21	21	0.492
22	22	0.62
23	23	0.583
24	24	0.334
25	25	0.296
26	26	0.574
27	27	0.427
28	28	0.21
29	29	0.819
3	3	0.551
30	30	0.905
31	31	0.38
32	32	0.0622
33	33	0.146
34	34	0.186
35	35	0.0367
36	36	0.0748
37	37	0.457
38	38	0.341
39	39	0.52
4	4	0.719
40	40	0.011
41	41	0.136
42	42	0.738
43	43	0.292
44	44	0.0893
45	45	0.364
46	46	0.985
47	47	0.486
48	48	0.102
49	49	0.359
5	5	0.789
50	50	0.507
51	51	0.434
52	52	0.244
53	53	0.463
54	54	0.964
55	55	0.184
56	56	0.936
57	57	0.334
58	58	0.0365
59	59	0.976
6	6	0.159
60	60	0.285
61	61	0.964
62	62	0.16
63	63	0.558
64	64	0.757
65	65	0.893
66	66	0.014
67	67	0.845
68	68	0.325
69	69	0.955
7	7	0.543
70	70	0.0495
71	71	0.688
72	72	0.225
73	73	3.55325e-4
74	74	0.108
75	75	0.417
76	76	0.879
77	77	0.681
78	78	0.637
79	79	0.561
8	8	0.162
80	80	0.295
81	81	0.217
82	82	0.107
83	83	0.444
84	84	0.892
85	85	0.0291
86	86	0.756
87	87	0.0265
88	88	0.884
89	89	0.899
9	9	0.499
90	90	0.333
91	91	0.705
92	92	0.34
93	93	0.991
94	94	0.253
95	95	0.153
96	96	0.746
97	97	0.423
98	98	0.908
99	99	0.0395

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10837

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000048 human endothelial cell of the aorta sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005519
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005519
+|HumanCAGEScanFiles=NCig10038;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10038.11207-116A1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10038.11207-116A1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10038.11207-116A1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10038.11207-116A1.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008216;DRR009088;DRZ000513;DRZ001898;DRZ011863;DRZ013248
+|accession_numbers_RNASeq=sRNA-Seq;DRX037013;DRR041379;DRZ007021
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0004573,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544
@@ Line 7: / Line 12: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
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12:10875831..10876025,-!p1@CSDA!0.55!266.94!CSDA;;chr18:53255415..53255491,-!p1@TCF4!0.55!26.83!TCF4;;chr11:65430554..65430579,-!p3@RELA!0.55!7.75!RELA;;chr1:8763296..8763339,-!p9@RERE!0.55!7.35!RERE;;chr18:52989031..52989079,-!p2@TCF4!0.55!6.96!TCF4;;chr17:46655704..46655718,-!p2@HOXB4!0.55!4.17!HOXB4;;chr10:45496320..45496336,+!p3@ZNF22!0.55!2.58!ZNF22;;chr2:46524537..46524553,+!p1@EPAS1!0.54!314.24!EPAS1;;chr6:21597765..21597779,+!p2@SOX4!0.54!25.04!SOX4;;chr1:8763440..8763460,-!p2@RERE!0.54!15.50!RERE;;chr11:65686732..65686756,+!p2@DRAP1!0.54!12.72!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.54!3.98!HMGA2;;chr1:8938736..8938756,-!p1@ENO1!0.53!3411.36!ENO1;;chr6:130339710..130339745,+!p1@L3MBTL3!0.53!23.85!L3MBTL3;;chr5:88178983..88179012,-!p1@MEF2C!0.53!23.26!MEF2C;;chr6:34205372..34205412,+!p5@HMGA1!0.53!15.30!HMGA1;;chr2:231280954..231280965,+!p2@SP100!0.53!4.97!SP100;;chr15:96876966..96877017,+!p12@NR2F2!0.53!3.78!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.53!3.58!NR2F2;;chr19:13136130..13136165,+!p6@NFIX!0.53!3.38!NFIX;;chr10:8095593..8095625,+!p3@GATA3!0.53!2.98!GATA3;;chr17:41622731..41622764,-!p5@ETV4!0.53!2.39!ETV4;;chr19:13134772..13134822,+!p2@NFIX!0.52!3.78!NFIX;;chr6:10415276..10415341,-!p2@TFAP2A!0.52!2.98!TFAP2A;;chr11:47237922..47237964,+!p4@DDB2!0.52!2.78!DDB2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.51!212.68!TAX1BP3;;chr12:2986206..2986258,-!p2@FOXM1!0.51!17.09!FOXM1;;chr5:92918919..92918942,+!p1@NR2F1!0.51!12.52!NR2F1;;chr15:96873921..96873946,+!p1@NR2F2!0.50!81.29!NR2F2;;chr1:158979792..158979814,+!p2@IFI16!0.50!26.83!IFI16;;chr15:90544532..90544563,+!p1@ZNF710!0.50!5.17!ZNF710;;chr8:103665947..103665981,-!p3@KLF10!0.50!3.38!KLF10;;chr10:8096631..8096660,+!p1@GATA3!0.50!2.78!GATA3;;chr10:94451574..94451587,+!p6@HHEX!0.50!2.19!HHEX;;chr12:80084018..80084035,-!p17@PAWR!0.50!2.19!PAWR;;chr16:86600458..86600461,+!p3@FOXC2!0.50!2.19!FOXC2;;chr17:46655672..46655697,-!p3@HOXB4!0.50!2.19!HOXB4;;chr17:47892398..47892407,+!p2@KAT7!0.50!2.19!KAT7;;chr7:27142290..27142310,-!p1@HOXA2!0.50!2.19!HOXA2;;chr1:151032860..151032918,+!p1@MLLT11!0.49!33.19!MLLT11;;chr19:19516543..19516559,+!p6@GATAD2A!0.49!8.55!GATAD2A;;chr16:29819446..29819471,+!p9@MAZ!0.49!7.75!MAZ;;chr11:65686802..65686818,+!p6@DRAP1!0.49!4.17!DRAP1;;chr20:50721803..50721857,-!p2@ZFP64!0.49!3.78!ZFP64;;chr19:53496806..53496848,-!p2@ZNF702P!0.49!3.58!ZNF702P;;chrX:66763856..66763896,+!p1@AR!0.49!3.38!AR;;chr19:49864746..49864780,-!p2@TEAD2!0.49!3.18!TEAD2;;chrX:66763815..66763854,+!p2@AR!0.49!2.98!AR;;chr10:8096772..8096787,+!p2@GATA3!0.49!2.58!GATA3;;chr18:52989001..52989030,-!p10@TCF4!0.49!2.39!TCF4;;chr13:41240737..41240787,-!p1@FOXO1!0.48!32.00!FOXO1;;chr15:96873861..96873872,+!p9@NR2F2!0.48!4.97!NR2F2;;chr8:106330696..106330719,+!p2@ZFPM2!0.48!2.78!ZFPM2;;chr16:86600870..86600921,+!p2@FOXC2!0.48!1.99!FOXC2;;chr19:13213555..13213568,-!p5@LYL1!0.48!1.99!LYL1;;chr13:72441074..72441172,-!p2@DACH1!0.48!1.99!DACH1;;chrX:57619083..57619113,+!p1@ZXDB!0.48!1.99!ZXDB;;chr8:128749984..128750033,+!p4@MYC!0.47!9.14!MYC;;chr9:14313893..14313908,-!p7@NFIB!0.47!3.18!NFIB;;chr19:45260775..45260838,+!p5@BCL3!0.47!2.78!BCL3;;chr15:37390374..37390422,-!p9@MEIS2!0.47!2.58!MEIS2;;chr15:96874012..96874042,+!p2@NR2F2!0.46!23.06!NR2F2;;chr2:85360499..85360598,+!p1@TCF7L1!0.46!14.31!TCF7L1;;chr19:19516507..19516539,+!p7@GATAD2A!0.46!7.16!GATAD2A;;chr6:85474299..85474324,-!p1@TBX18!0.46!3.98!TBX18;;chr4:146402795..146402816,+!p7@SMAD1!0.46!2.78!SMAD1;;chr8:37963466..37963506,+!p3@ASH2L!0.46!2.58!ASH2L;;chr11:62368696..62368759,-!p4@MTA2!0.45!15.30!MTA2;;chr12:27485823..27485868,+!p2@ARNTL2!0.45!9.74!ARNTL2;;chr9:14314522..14314556,-!p3@NFIB!0.45!5.37!NFIB;;chr15:57211634..57211657,+!p5@TCF12!0.45!3.18!TCF12;;chr17:41622834..41622883,-!p6@ETV4!0.45!2.39!ETV4;;chr17:8027418..8027432,-!p1@HES7!0.45!1.79!HES7;;chr3:169381183..169381205,-!p4@MECOM!0.45!1.79!MECOM;;chr2:101436564..101436647,+!p1@NPAS2!0.44!51.28!NPAS2;;chr11:47236489..47236567,+!p2@DDB2!0.44!34.19!DDB2;;chr9:116638565..116638606,+!p1@ZNF618!0.44!9.94!ZNF618;;chr22:38598057..38598071,+!p3@MAFF!0.44!5.17!MAFF;;chr15:77713299..77713316,+!p3@HMG20A!0.44!3.18!HMG20A;;chr15:57210759..57210775,+!p7@TCF12!0.44!2.98!TCF12;;chr1:8938766..8938774,-!p2@ENO1!0.43!168.75!ENO1;;chr17:7590797..7590815,-!p1@TP53!0.43!105.34!TP53;;chr4:146402997..146403020,+!p1@SMAD1!0.43!16.70!SMAD1;;chr14:73360799..73360817,-!p1@DPF3!0.43!7.75!DPF3;;chr9:14083467..14083483,-!p4@NFIB!0.43!5.37!NFIB;;chr19:19516561..19516644,+!p1@GATAD2A!0.42!50.68!GATAD2A;;chr11:62369229..62369289,-!p2@MTA2!0.42!34.58!MTA2;;chr12:77459306..77459365,-!p1@E2F7!0.42!29.62!E2F7;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.42!15.11!SOX7;;chr1:204042233..204042249,+!p1@SOX13!0.42!14.51!SOX13;;chr7:26191809..26191890,+!p1@NFE2L3!0.42!11.33!NFE2L3;;chr11:65687362..65687436,+!p3@DRAP1!0.42!10.34!DRAP1;;chr12:10875658..10875708,-!p2@CSDA!0.42!4.77!CSDA;;chr10:31607702..31607755,+!p3@ZEB1!0.42!1.99!ZEB1;;chr8:128748308..128748324,+!p2@MYC!0.41!64.00!MYC;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002544;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000413;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
 |ffid_belonging_in_development=CL:0002546,CL:0000222
 |fonse_cell_line=
@@ Line 38: / Line 45: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10837.11207-116A1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10837.11207-116A1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10837.11207-116A1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10837.11207-116A1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10837.11207-116A1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11207-116A1
 |is_a=EFO:0002091;;FF:0000048
 |is_obsolete=
+|library_id=CNhs10837
+|library_id_phase_based=2:CNhs10837
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11207
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.TGACCA.11207
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11207
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.TGACCA.11207
 |name=Endothelial Cells - Aortic, donor0
 |namespace=FANTOM5
@@ Line 46: / Line 66: @@
 |profile_cagescan=NCig10038,,,
 |profile_hcage=CNhs10837,LSID700,release009,COMPLETED
-|profile_rnaseq=,,,
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 |profile_srnaseq=SRhi10003,,,
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 |rna_box=116
@@ Line 61: / Line 83: @@
 |rna_tube_id=116A1
 |rna_weight_ug=25
+|rnaseq_library_id=SRhi10003.TGACCA
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 83: / Line 107: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11207-116A1;search_select_hide=table117:FF:11207-116A1
 }}

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FF:11207-116A1: Difference between revisions

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Latest revision as of 16:24, 3 June 2020

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