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{{f5samples
{{f5samples
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10837.11207-116A1.hg19.nobarcode.rdna.fa.gz
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|id=FF:11207-116A1
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|library_id=CNhs10837
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11207
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|name=Endothelial Cells - Aortic, donor0
|name=Endothelial Cells - Aortic, donor0
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|sample_category=primary cells
Line 91: Line 107:
|top_motifs=SOX{8,9,10}:1.95206185597;NFATC1..3:1.32395005182;SOX2:1.24390842708;RXR{A,B,G}:1.17150101813;ELF1,2,4:1.07752730354;SOX5:1.06398591378;FOX{I1,J2}:1.05943654225;POU3F1..4:1.0282875008;GATA6:1.00565210104;TLX1..3_NFIC{dimer}:0.967999008093;PAX6:0.948385935036;HBP1_HMGB_SSRP1_UBTF:0.832239425385;ETS1,2:0.806967774737;CRX:0.791119828517;TFDP1:0.762054502617;PAX8:0.756806659672;NANOG:0.732217225491;TFAP4:0.701241971642;AR:0.644084665528;ADNP_IRX_SIX_ZHX:0.609586772378;IKZF1:0.601053677276;PAX1,9:0.593731848669;bHLH_family:0.591447338388;MYB:0.583406934718;XCPE1{core}:0.573998209265;SOX17:0.573522121938;LHX3,4:0.568326333661;SPIB:0.546896979861;TP53:0.545102711302;ZNF148:0.540178655429;GFI1B:0.538329425126;LEF1_TCF7_TCF7L1,2:0.524689310324;PBX1:0.523017596385;GTF2A1,2:0.492799810745;NFE2:0.454234620929;NFE2L2:0.425444335926;NFY{A,B,C}:0.417065841193;HAND1,2:0.39883775652;ALX1:0.393091262646;TFAP2{A,C}:0.390489334675;E2F1..5:0.380067993147;ZFP161:0.378792309639;HES1:0.370573636713;BACH2:0.370135650248;HOX{A5,B5}:0.36785401366;ONECUT1,2:0.363932719603;FOS_FOS{B,L1}_JUN{B,D}:0.355393213051;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.31677358542;ZNF238:0.312520946778;FOXA2:0.309667034209;POU1F1:0.306834615357;YY1:0.306307457262;CDC5L:0.296269692659;NKX2-2,8:0.2642162575;GFI1:0.253637391355;PITX1..3:0.253138530151;NR3C1:0.249200356922;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.237909957499;MTE{core}:0.232703298846;ZNF143:0.231770755117;TFAP2B:0.213039800165;FOSL2:0.204391030096;IKZF2:0.194048282202;ARID5B:0.171268483938;TEAD1:0.162819831242;SP1:0.161558877623;HIC1:0.155960110527;SRF:0.152795445289;NR5A1,2:0.147866380192;RORA:0.128446409748;MYOD1:0.117169390544;STAT5{A,B}:0.0914063152586;NRF1:0.0750363713901;STAT2,4,6:0.0711058986065;NFE2L1:0.0674516989564;RBPJ:0.0649489849733;ZNF423:0.0449416984109;TBP:0.0431321253974;EN1,2:0.0426069009608;FOXM1:0.0234420570787;FOXD3:-0.00671609925218;NHLH1,2:-0.0134840988715;TLX2:-0.0216404255828;PAX2:-0.0318913532253;TAL1_TCF{3,4,12}:-0.0346062527078;POU2F1..3:-0.0357298055589;REST:-0.0463562329259;GTF2I:-0.0556076135793;CUX2:-0.0683662663468;SPI1:-0.0755323729907;HNF4A_NR2F1,2:-0.0804512781511;CEBPA,B_DDIT3:-0.0821461303834;ATF2:-0.0827606369216;ZBTB6:-0.0944149391147;MEF2{A,B,C,D}:-0.0959678332747;STAT1,3:-0.105135194579;MAZ:-0.113574695466;PAX5:-0.121351010728;EGR1..3:-0.122087588446;GLI1..3:-0.128446057796;PAX3,7:-0.142315606395;FOXL1:-0.152564484582;ESRRA:-0.163500613781;SPZ1:-0.163887666148;ELK1,4_GABP{A,B1}:-0.170388870066;HMGA1,2:-0.175168817316;NFIX:-0.177784884164;SMAD1..7,9:-0.182703052227;GATA4:-0.192063550806;HNF1A:-0.195644800714;MED-1{core}:-0.213384257275;PRDM1:-0.21341198437;ATF6:-0.219985783708;LMO2:-0.221171545999;NKX3-2:-0.224299921399;ZIC1..3:-0.238996214748;DMAP1_NCOR{1,2}_SMARC:-0.241718810028;VSX1,2:-0.247213056783;GZF1:-0.258359547631;JUN:-0.271108341177;PATZ1:-0.279163045595;PRRX1,2:-0.302486053653;HLF:-0.305001269017;GCM1,2:-0.319714657799;NFKB1_REL_RELA:-0.329546683001;TFCP2:-0.331550836696;RFX1:-0.333016778021;OCT4_SOX2{dimer}:-0.338198314643;MTF1:-0.338873254168;NANOG{mouse}:-0.343095077419;MYBL2:-0.353356420689;POU5F1:-0.355937804915;EBF1:-0.356586490934;KLF4:-0.370065554078;HSF1,2:-0.390500416769;MZF1:-0.39557420124;RUNX1..3:-0.399166638711;FOXO1,3,4:-0.405811585618;BREu{core}:-0.419789638858;SREBF1,2:-0.434093119118;EP300:-0.465487732753;PPARG:-0.473004896233;FOX{F1,F2,J1}:-0.477875760872;HIF1A:-0.4964497301;UFEwm:-0.507390402123;FOX{D1,D2}:-0.508991352341;MAFB:-0.512873564379;NKX2-3_NKX2-5:-0.516955037296;IRF1,2:-0.517968189909;IRF7:-0.523025956932;EVI1:-0.530912405129;SNAI1..3:-0.535176761859;TBX4,5:-0.58125859178;CREB1:-0.583864625279;FOXP1:-0.596623652321;ZNF384:-0.613212918346;TGIF1:-0.613729188502;RREB1:-0.61470801603;HOX{A6,A7,B6,B7}:-0.616013339456;TEF:-0.62421614943;AHR_ARNT_ARNT2:-0.625137085212;PAX4:-0.647649636176;BPTF:-0.660473247063;DBP:-0.662448786139;HMX1:-0.6948410309;HOXA9_MEIS1:-0.697038405636;NFIL3:-0.706839871844;MYFfamily:-0.712134003179;ATF4:-0.734554210612;ALX4:-0.738633614638;FOXN1:-0.755410846053;FOXQ1:-0.76641933508;ZEB1:-0.779436281274;ATF5_CREB3:-0.785629973878;AIRE:-0.80218532684;XBP1:-0.808125729968;TOPORS:-0.863750653425;POU6F1:-0.883667996602;FOXP3:-0.913138561448;ESR1:-0.927157824706;NR6A1:-0.941763332456;NR1H4:-0.999846967565;RXRA_VDR{dimer}:-1.05918493464;T:-1.07072441464;RFX2..5_RFXANK_RFXAP:-1.11967182918;HOX{A4,D4}:-1.182953808;NKX6-1,2:-1.18958273596;ZBTB16:-1.19352753515;PDX1:-1.23907049562;NKX3-1:-1.24051441062;CDX1,2,4:-1.51890610551;NKX2-1,4:-1.76804491249
|top_motifs=SOX{8,9,10}:1.95206185597;NFATC1..3:1.32395005182;SOX2:1.24390842708;RXR{A,B,G}:1.17150101813;ELF1,2,4:1.07752730354;SOX5:1.06398591378;FOX{I1,J2}:1.05943654225;POU3F1..4:1.0282875008;GATA6:1.00565210104;TLX1..3_NFIC{dimer}:0.967999008093;PAX6:0.948385935036;HBP1_HMGB_SSRP1_UBTF:0.832239425385;ETS1,2:0.806967774737;CRX:0.791119828517;TFDP1:0.762054502617;PAX8:0.756806659672;NANOG:0.732217225491;TFAP4:0.701241971642;AR:0.644084665528;ADNP_IRX_SIX_ZHX:0.609586772378;IKZF1:0.601053677276;PAX1,9:0.593731848669;bHLH_family:0.591447338388;MYB:0.583406934718;XCPE1{core}:0.573998209265;SOX17:0.573522121938;LHX3,4:0.568326333661;SPIB:0.546896979861;TP53:0.545102711302;ZNF148:0.540178655429;GFI1B:0.538329425126;LEF1_TCF7_TCF7L1,2:0.524689310324;PBX1:0.523017596385;GTF2A1,2:0.492799810745;NFE2:0.454234620929;NFE2L2:0.425444335926;NFY{A,B,C}:0.417065841193;HAND1,2:0.39883775652;ALX1:0.393091262646;TFAP2{A,C}:0.390489334675;E2F1..5:0.380067993147;ZFP161:0.378792309639;HES1:0.370573636713;BACH2:0.370135650248;HOX{A5,B5}:0.36785401366;ONECUT1,2:0.363932719603;FOS_FOS{B,L1}_JUN{B,D}:0.355393213051;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.31677358542;ZNF238:0.312520946778;FOXA2:0.309667034209;POU1F1:0.306834615357;YY1:0.306307457262;CDC5L:0.296269692659;NKX2-2,8:0.2642162575;GFI1:0.253637391355;PITX1..3:0.253138530151;NR3C1:0.249200356922;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.237909957499;MTE{core}:0.232703298846;ZNF143:0.231770755117;TFAP2B:0.213039800165;FOSL2:0.204391030096;IKZF2:0.194048282202;ARID5B:0.171268483938;TEAD1:0.162819831242;SP1:0.161558877623;HIC1:0.155960110527;SRF:0.152795445289;NR5A1,2:0.147866380192;RORA:0.128446409748;MYOD1:0.117169390544;STAT5{A,B}:0.0914063152586;NRF1:0.0750363713901;STAT2,4,6:0.0711058986065;NFE2L1:0.0674516989564;RBPJ:0.0649489849733;ZNF423:0.0449416984109;TBP:0.0431321253974;EN1,2:0.0426069009608;FOXM1:0.0234420570787;FOXD3:-0.00671609925218;NHLH1,2:-0.0134840988715;TLX2:-0.0216404255828;PAX2:-0.0318913532253;TAL1_TCF{3,4,12}:-0.0346062527078;POU2F1..3:-0.0357298055589;REST:-0.0463562329259;GTF2I:-0.0556076135793;CUX2:-0.0683662663468;SPI1:-0.0755323729907;HNF4A_NR2F1,2:-0.0804512781511;CEBPA,B_DDIT3:-0.0821461303834;ATF2:-0.0827606369216;ZBTB6:-0.0944149391147;MEF2{A,B,C,D}:-0.0959678332747;STAT1,3:-0.105135194579;MAZ:-0.113574695466;PAX5:-0.121351010728;EGR1..3:-0.122087588446;GLI1..3:-0.128446057796;PAX3,7:-0.142315606395;FOXL1:-0.152564484582;ESRRA:-0.163500613781;SPZ1:-0.163887666148;ELK1,4_GABP{A,B1}:-0.170388870066;HMGA1,2:-0.175168817316;NFIX:-0.177784884164;SMAD1..7,9:-0.182703052227;GATA4:-0.192063550806;HNF1A:-0.195644800714;MED-1{core}:-0.213384257275;PRDM1:-0.21341198437;ATF6:-0.219985783708;LMO2:-0.221171545999;NKX3-2:-0.224299921399;ZIC1..3:-0.238996214748;DMAP1_NCOR{1,2}_SMARC:-0.241718810028;VSX1,2:-0.247213056783;GZF1:-0.258359547631;JUN:-0.271108341177;PATZ1:-0.279163045595;PRRX1,2:-0.302486053653;HLF:-0.305001269017;GCM1,2:-0.319714657799;NFKB1_REL_RELA:-0.329546683001;TFCP2:-0.331550836696;RFX1:-0.333016778021;OCT4_SOX2{dimer}:-0.338198314643;MTF1:-0.338873254168;NANOG{mouse}:-0.343095077419;MYBL2:-0.353356420689;POU5F1:-0.355937804915;EBF1:-0.356586490934;KLF4:-0.370065554078;HSF1,2:-0.390500416769;MZF1:-0.39557420124;RUNX1..3:-0.399166638711;FOXO1,3,4:-0.405811585618;BREu{core}:-0.419789638858;SREBF1,2:-0.434093119118;EP300:-0.465487732753;PPARG:-0.473004896233;FOX{F1,F2,J1}:-0.477875760872;HIF1A:-0.4964497301;UFEwm:-0.507390402123;FOX{D1,D2}:-0.508991352341;MAFB:-0.512873564379;NKX2-3_NKX2-5:-0.516955037296;IRF1,2:-0.517968189909;IRF7:-0.523025956932;EVI1:-0.530912405129;SNAI1..3:-0.535176761859;TBX4,5:-0.58125859178;CREB1:-0.583864625279;FOXP1:-0.596623652321;ZNF384:-0.613212918346;TGIF1:-0.613729188502;RREB1:-0.61470801603;HOX{A6,A7,B6,B7}:-0.616013339456;TEF:-0.62421614943;AHR_ARNT_ARNT2:-0.625137085212;PAX4:-0.647649636176;BPTF:-0.660473247063;DBP:-0.662448786139;HMX1:-0.6948410309;HOXA9_MEIS1:-0.697038405636;NFIL3:-0.706839871844;MYFfamily:-0.712134003179;ATF4:-0.734554210612;ALX4:-0.738633614638;FOXN1:-0.755410846053;FOXQ1:-0.76641933508;ZEB1:-0.779436281274;ATF5_CREB3:-0.785629973878;AIRE:-0.80218532684;XBP1:-0.808125729968;TOPORS:-0.863750653425;POU6F1:-0.883667996602;FOXP3:-0.913138561448;ESR1:-0.927157824706;NR6A1:-0.941763332456;NR1H4:-0.999846967565;RXRA_VDR{dimer}:-1.05918493464;T:-1.07072441464;RFX2..5_RFXANK_RFXAP:-1.11967182918;HOX{A4,D4}:-1.182953808;NKX6-1,2:-1.18958273596;ZBTB16:-1.19352753515;PDX1:-1.23907049562;NKX3-1:-1.24051441062;CDX1,2,4:-1.51890610551;NKX2-1,4:-1.76804491249
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11207-116A1;search_select_hide=table117:FF:11207-116A1
}}
}}

Latest revision as of 16:24, 3 June 2020

Name:Endothelial Cells - Aortic, donor0
Species:Human (Homo sapiens)
Library ID:CNhs10837
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stageNA
sexNA
ageNA
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberCA304-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005519
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10837 CAGE DRX008216 DRR009088
Accession ID Hg19

Library idBAMCTSS
CNhs10837 DRZ000513 DRZ001898
Accession ID Hg38

Library idBAMCTSS
CNhs10837 DRZ011863 DRZ013248
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10038downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005519
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.TGACCA sRNA-Seq DRX037013 DRR041379
Accession ID Hg19

Library idBAMCTSS
SRhi10003.TGACCA DRZ007021


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.157
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.124
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.379
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.182
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.235
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.195
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0804
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.57
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.32
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0787
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.554
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10837

Jaspar motifP-value
MA0002.20.172
MA0003.10.606
MA0004.10.389
MA0006.10.0472
MA0007.10.0852
MA0009.10.462
MA0014.10.751
MA0017.10.895
MA0018.20.00766
MA0019.10.238
MA0024.10.0484
MA0025.10.679
MA0027.10.594
MA0028.10.146
MA0029.10.46
MA0030.10.811
MA0031.10.911
MA0035.20.00386
MA0038.10.0101
MA0039.20.0356
MA0040.10.301
MA0041.10.134
MA0042.10.565
MA0043.16.30138e-4
MA0046.10.605
MA0047.20.223
MA0048.10.0306
MA0050.10.0915
MA0051.10.95
MA0052.10.635
MA0055.14.35004e-4
MA0057.10.368
MA0058.10.478
MA0059.10.515
MA0060.13.19207e-5
MA0061.10.0138
MA0062.20.174
MA0065.20.658
MA0066.10.526
MA0067.10.33
MA0068.10.402
MA0069.10.178
MA0070.10.967
MA0071.10.997
MA0072.10.544
MA0073.10.178
MA0074.10.375
MA0076.10.929
MA0077.11.10068e-6
MA0078.10.0365
MA0079.20.324
MA0080.27.28666e-6
MA0081.10.0763
MA0083.10.124
MA0084.10.188
MA0087.10.0897
MA0088.10.0928
MA0090.10.42
MA0091.10.772
MA0092.10.335
MA0093.10.361
MA0099.27.77459e-22
MA0100.10.821
MA0101.10.99
MA0102.20.00272
MA0103.10.00118
MA0104.20.472
MA0105.10.0346
MA0106.10.00192
MA0107.10.636
MA0108.20.173
MA0111.10.193
MA0112.20.253
MA0113.10.264
MA0114.10.299
MA0115.10.772
MA0116.10.151
MA0117.10.653
MA0119.10.0437
MA0122.10.0376
MA0124.10.43
MA0125.10.575
MA0131.10.385
MA0135.10.859
MA0136.13.41583e-5
MA0137.20.769
MA0138.20.261
MA0139.10.381
MA0140.12.90656e-4
MA0141.10.323
MA0142.10.572
MA0143.10.719
MA0144.10.244
MA0145.10.119
MA0146.10.835
MA0147.10.905
MA0148.10.0645
MA0149.10.0144
MA0150.15.29734e-4
MA0152.10.78
MA0153.10.204
MA0154.10.181
MA0155.10.39
MA0156.11.40585e-8
MA0157.10.717
MA0159.10.721
MA0160.10.603
MA0162.10.13
MA0163.10.0309
MA0164.10.786
MA0258.10.277
MA0259.10.887



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10837

Novel motifP-value
10.724
100.679
1000.692
1010.0941
1020.871
1030.661
1040.908
1050.95
1060.932
1070.182
1080.972
1090.201
110.501
1100.0279
1110.859
1120.522
1130.131
1140.796
1150.189
1160.588
1170.568
1180.981
1190.644
120.268
1200.132
1210.323
1220.452
1230.0247
1240.0518
1250.429
1260.519
1270.803
1280.358
1290.487
130.257
1300.179
1310.91
1320.938
1330.401
1340.94
1350.239
1360.0517
1370.348
1380.815
1390.215
140.365
1400.856
1410.475
1420.71
1430.314
1440.403
1450.226
1460.169
1470.541
1480.0169
1490.271
150.887
1500.178
1510.732
1520.0285
1530.238
1540.857
1550.191
1560.0728
1570.0172
1580.106
1590.427
160.679
1600.216
1610.0821
1620.334
1630.499
1640.783
1650.599
1660.52
1670.173
1680.219
1690.282
170.507
180.758
190.405
20.682
200.244
210.492
220.62
230.583
240.334
250.296
260.574
270.427
280.21
290.819
30.551
300.905
310.38
320.0622
330.146
340.186
350.0367
360.0748
370.457
380.341
390.52
40.719
400.011
410.136
420.738
430.292
440.0893
450.364
460.985
470.486
480.102
490.359
50.789
500.507
510.434
520.244
530.463
540.964
550.184
560.936
570.334
580.0365
590.976
60.159
600.285
610.964
620.16
630.558
640.757
650.893
660.014
670.845
680.325
690.955
70.543
700.0495
710.688
720.225
733.55325e-4
740.108
750.417
760.879
770.681
780.637
790.561
80.162
800.295
810.217
820.107
830.444
840.892
850.0291
860.756
870.0265
880.884
890.899
90.499
900.333
910.705
920.34
930.991
940.253
950.153
960.746
970.423
980.908
990.0395



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10837


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

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