FF:11215-116A9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005496 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005496 | ||
|accession_numbers=CAGE;DRX008440;DRR009312;DRZ000737;DRZ002122;DRZ012087;DRZ013472 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037259;DRR041625;DRZ007267 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0005388,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0001781,UBERON:0001032,UBERON:0010317,UBERON:0001782,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000255,CL:0000149,CL:0002586 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000158 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.18!152.07!OTX2;;chr11:61520075..61520136,+!p1@C11orf9!1.90!160.79!C11orf9;;chr14:57272369..57272391,-!p2@OTX2!1.85!70.52!OTX2;;chr9:126774018..126774055,+!p1@LHX2!1.84!67.45!LHX2;;chr18:56940611..56940660,-!p1@RAX!1.64!42.57!RAX;;chr2:45168875..45168916,+!p1@SIX3!1.57!36.16!SIX3;;chr2:45168834..45168847,+!p2@SIX3!1.53!33.08!SIX3;;chr6:1312325..1312340,+!p1@FOXQ1!1.52!51.03!FOXQ1;;chr11:61522844..61522875,+!p2@C11orf9!1.42!25.13!C11orf9;;chr16:1031762..1031781,+!p1@SOX8!1.38!23.08!SOX8;;chr12:66218255..66218304,+!p3@HMGA2!1.35!56.42!HMGA2;;chr9:126774058..126774081,+!p3@LHX2!1.33!20.26!LHX2;;chr2:45169193..45169219,+!p3@SIX3!1.32!20.00!SIX3;;chr22:38380543..38380569,-!p1@SOX10!1.29!18.46!SOX10;;chr15:42749722..42749739,-!p2@ZFP106!1.26!30.77!ZFP106;;chr3:52001448..52001478,-!p2@PCBP4!1.24!220.80!PCBP4;;chr9:126773880..126773895,+!p2@LHX2!1.23!15.90!LHX2;;chr1:2985760..2985774,+!p1@PRDM16!1.21!15.13!PRDM16;;chr6:34204921..34204939,+!p3@HMGA1!1.16!394.93!HMGA1;;chr7:100065686..100065701,-!p2@TSC22D4!1.15!13.08!TSC22D4;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.08!SOX11;;chr6:34204672..34204692,+!p1@HMGA1!1.14!1424.32!HMGA1;;chr18:56940663..56940691,-!p2@RAX!1.12!12.05!RAX;;chr12:66218212..66218244,+!p5@HMGA2!1.10!16.93!HMGA2;;chr14:57277098..57277116,-!p3@OTX2!1.10!11.54!OTX2;;chr5:72744445..72744466,-!p2@FOXD1!1.09!18.98!FOXD1;;chr19:48773337..48773339,+!p2@ZNF114!1.08!11.03!ZNF114;;chr3:52001426..52001447,-!p3@PCBP4!1.05!29.49!PCBP4;;chr12:66218183..66218209,+!p4@HMGA2!1.04!19.23!HMGA2;;chr3:25469724..25469773,+!p1@RARB!1.02!13.85!RARB;;chr11:31832658..31832681,-!p1@PAX6!1.02!9.49!PAX6;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.31!NR2F1;;chr2:45169143..45169167,+!p5@SIX3!1.01!9.23!SIX3;;chr17:7492684..7492778,-!p2@SOX15!1.00!19.49!SOX15;;chr11:65667884..65667895,-!p2@FOSL1!0.99!34.62!FOSL1;;chr3:69915385..69915438,+!p3@MITF!0.99!8.72!MITF;;chr2:45169179..45169190,+!p8@SIX3!0.98!8.46!SIX3;;chr15:83953397..83953425,-!p1@BNC1!0.96!9.49!BNC1;;chr4:299227..299272,-!p1@ZNF732!0.96!8.21!ZNF732;;chr12:66218378..66218401,+!p6@HMGA2!0.95!12.57!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.95!7.95!RARB;;chr2:45168856..45168867,+!p7@SIX3!0.93!7.44!SIX3;;chr4:54966328..54966335,+!p1@GSX2!0.93!7.44!GSX2;;chr7:64838786..64838809,+!p2@ZNF92!0.88!39.24!ZNF92;;chr6:19837592..19837621,+!p1@ID4!0.87!41.29!ID4;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.54!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.87!14.62!SOHLH2;;chr3:69915369..69915381,+!p4@MITF!0.85!6.15!MITF;;chr22:41763452..41763466,+!p2@TEF!0.82!5.64!TEF;;chr17:70117153..70117174,+!p1@SOX9!0.81!61.29!SOX9;;chr3:25470062..25470084,+!p4@RARB!0.81!5.39!RARB;;chr2:71127699..71127744,+!p1@VAX2!0.80!11.54!VAX2;;chr11:65686802..65686818,+!p6@DRAP1!0.78!9.23!DRAP1;;chr15:66994615..66994630,+!p3@SMAD6!0.78!7.44!SMAD6;;chr15:66994663..66994680,+!p1@SMAD6!0.77!12.31!SMAD6;;chr3:52001396..52001425,-!p4@PCBP4!0.77!9.23!PCBP4;;chr2:63277948..63277974,+!p1@OTX1!0.77!4.87!OTX1;;chr13:72441315..72441454,-!p1@DACH1!0.76!10.00!DACH1;;chr12:54785074..54785122,-!p2@ZNF385A!0.76!7.69!ZNF385A;;chr11:65667846..65667868,-!p1@FOSL1!0.75!136.18!FOSL1;;chr5:92918894..92918912,+!p2@NR2F1!0.75!16.67!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.82!FOXD1;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.41!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.74!4.87!HMGA2;;chr1:41827095..41827155,+!p1@FOXO6!0.73!6.15!FOXO6;;chr3:141121847..141121868,+!p5@ZBTB38!0.71!6.67!ZBTB38;;chr12:66218573..66218596,+!p7@HMGA2!0.71!6.41!HMGA2;;chr5:92918860..92918871,+!p10@NR2F1!0.71!4.62!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!0.71!4.10!NR2F1;;chr11:65668011..65668020,-!p3@FOSL1!0.71!4.10!FOSL1;;chr9:128509663..128509715,+!p1@PBX3!0.70!15.13!PBX3;;chr12:66218443..66218461,+!p8@HMGA2!0.70!5.39!HMGA2;;chr13:37494275..37494304,-!p2@SMAD9!0.69!3.85!SMAD9;;chr7:101917407..101917443,+!p3@CUX1!0.69!3.85!CUX1;;chr2:45168959..45168990,+!p6@SIX3!0.69!3.85!SIX3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.69!3.85!PEG3;;chr11:65686732..65686756,+!p2@DRAP1!0.68!17.95!DRAP1;;chr19:45260775..45260838,+!p5@BCL3!0.68!5.13!BCL3;;chr12:26277956..26277980,-!p1@BHLHE41!0.67!14.87!BHLHE41;;chr14:21994337..21994442,-!p1@SALL2!0.67!11.28!SALL2;;chr8:86089369..86089408,+!p1@E2F5!0.66!10.77!E2F5;;chr14:57277163..57277168,-!p4@OTX2!0.66!3.59!OTX2;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.59!FOXL1;;chr2:45168997..45169020,+!p4@SIX3!0.66!3.59!SIX3;;chr2:5832493..5832507,+!p2@SOX11!0.66!3.59!SOX11;;chr3:128206762..128206781,-!p2@GATA2!0.65!25.13!GATA2;;chr15:66994561..66994597,+!p2@SMAD6!0.65!9.23!SMAD6;;chr3:12329358..12329393,+!p3@PPARG!0.64!9.23!PPARG;;chr20:6748325..6748352,+!p1@BMP2!0.64!5.13!BMP2;;chr19:48325184..48325211,+!p1@CRX!0.64!3.33!CRX;;chr12:125003087..125003141,-!p4@NCOR2!0.63!4.36!NCOR2;;chr3:12330560..12330579,+!p1@PPARG!0.63!3.85!PPARG;;chr19:53496768..53496799,-!p1@ZNF702P!0.62!5.39!ZNF702P;;chr13:37494248..37494260,-!p3@SMAD9!0.61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| |expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.18!152.07!OTX2;;chr11:61520075..61520136,+!p1@C11orf9!1.90!160.79!C11orf9;;chr14:57272369..57272391,-!p2@OTX2!1.85!70.52!OTX2;;chr9:126774018..126774055,+!p1@LHX2!1.84!67.45!LHX2;;chr18:56940611..56940660,-!p1@RAX!1.64!42.57!RAX;;chr2:45168875..45168916,+!p1@SIX3!1.57!36.16!SIX3;;chr2:45168834..45168847,+!p2@SIX3!1.53!33.08!SIX3;;chr6:1312325..1312340,+!p1@FOXQ1!1.52!51.03!FOXQ1;;chr11:61522844..61522875,+!p2@C11orf9!1.42!25.13!C11orf9;;chr16:1031762..1031781,+!p1@SOX8!1.38!23.08!SOX8;;chr12:66218255..66218304,+!p3@HMGA2!1.35!56.42!HMGA2;;chr9:126774058..126774081,+!p3@LHX2!1.33!20.26!LHX2;;chr2:45169193..45169219,+!p3@SIX3!1.32!20.00!SIX3;;chr22:38380543..38380569,-!p1@SOX10!1.29!18.46!SOX10;;chr15:42749722..42749739,-!p2@ZFP106!1.26!30.77!ZFP106;;chr3:52001448..52001478,-!p2@PCBP4!1.24!220.80!PCBP4;;chr9:126773880..126773895,+!p2@LHX2!1.23!15.90!LHX2;;chr1:2985760..2985774,+!p1@PRDM16!1.21!15.13!PRDM16;;chr6:34204921..34204939,+!p3@HMGA1!1.16!394.93!HMGA1;;chr7:100065686..100065701,-!p2@TSC22D4!1.15!13.08!TSC22D4;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.08!SOX11;;chr6:34204672..34204692,+!p1@HMGA1!1.14!1424.32!HMGA1;;chr18:56940663..56940691,-!p2@RAX!1.12!12.05!RAX;;chr12:66218212..66218244,+!p5@HMGA2!1.10!16.93!HMGA2;;chr14:57277098..57277116,-!p3@OTX2!1.10!11.54!OTX2;;chr5:72744445..72744466,-!p2@FOXD1!1.09!18.98!FOXD1;;chr19:48773337..48773339,+!p2@ZNF114!1.08!11.03!ZNF114;;chr3:52001426..52001447,-!p3@PCBP4!1.05!29.49!PCBP4;;chr12:66218183..66218209,+!p4@HMGA2!1.04!19.23!HMGA2;;chr3:25469724..25469773,+!p1@RARB!1.02!13.85!RARB;;chr11:31832658..31832681,-!p1@PAX6!1.02!9.49!PAX6;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.31!NR2F1;;chr2:45169143..45169167,+!p5@SIX3!1.01!9.23!SIX3;;chr17:7492684..7492778,-!p2@SOX15!1.00!19.49!SOX15;;chr11:65667884..65667895,-!p2@FOSL1!0.99!34.62!FOSL1;;chr3:69915385..69915438,+!p3@MITF!0.99!8.72!MITF;;chr2:45169179..45169190,+!p8@SIX3!0.98!8.46!SIX3;;chr15:83953397..83953425,-!p1@BNC1!0.96!9.49!BNC1;;chr4:299227..299272,-!p1@ZNF732!0.96!8.21!ZNF732;;chr12:66218378..66218401,+!p6@HMGA2!0.95!12.57!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.95!7.95!RARB;;chr2:45168856..45168867,+!p7@SIX3!0.93!7.44!SIX3;;chr4:54966328..54966335,+!p1@GSX2!0.93!7.44!GSX2;;chr7:64838786..64838809,+!p2@ZNF92!0.88!39.24!ZNF92;;chr6:19837592..19837621,+!p1@ID4!0.87!41.29!ID4;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.54!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.87!14.62!SOHLH2;;chr3:69915369..69915381,+!p4@MITF!0.85!6.15!MITF;;chr22:41763452..41763466,+!p2@TEF!0.82!5.64!TEF;;chr17:70117153..70117174,+!p1@SOX9!0.81!61.29!SOX9;;chr3:25470062..25470084,+!p4@RARB!0.81!5.39!RARB;;chr2:71127699..71127744,+!p1@VAX2!0.80!11.54!VAX2;;chr11:65686802..65686818,+!p6@DRAP1!0.78!9.23!DRAP1;;chr15:66994615..66994630,+!p3@SMAD6!0.78!7.44!SMAD6;;chr15:66994663..66994680,+!p1@SMAD6!0.77!12.31!SMAD6;;chr3:52001396..52001425,-!p4@PCBP4!0.77!9.23!PCBP4;;chr2:63277948..63277974,+!p1@OTX1!0.77!4.87!OTX1;;chr13:72441315..72441454,-!p1@DACH1!0.76!10.00!DACH1;;chr12:54785074..54785122,-!p2@ZNF385A!0.76!7.69!ZNF385A;;chr11:65667846..65667868,-!p1@FOSL1!0.75!136.18!FOSL1;;chr5:92918894..92918912,+!p2@NR2F1!0.75!16.67!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.82!FOXD1;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.41!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.74!4.87!HMGA2;;chr1:41827095..41827155,+!p1@FOXO6!0.73!6.15!FOXO6;;chr3:141121847..141121868,+!p5@ZBTB38!0.71!6.67!ZBTB38;;chr12:66218573..66218596,+!p7@HMGA2!0.71!6.41!HMGA2;;chr5:92918860..92918871,+!p10@NR2F1!0.71!4.62!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!0.71!4.10!NR2F1;;chr11:65668011..65668020,-!p3@FOSL1!0.71!4.10!FOSL1;;chr9:128509663..128509715,+!p1@PBX3!0.70!15.13!PBX3;;chr12:66218443..66218461,+!p8@HMGA2!0.70!5.39!HMGA2;;chr13:37494275..37494304,-!p2@SMAD9!0.69!3.85!SMAD9;;chr7:101917407..101917443,+!p3@CUX1!0.69!3.85!CUX1;;chr2:45168959..45168990,+!p6@SIX3!0.69!3.85!SIX3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.69!3.85!PEG3;;chr11:65686732..65686756,+!p2@DRAP1!0.68!17.95!DRAP1;;chr19:45260775..45260838,+!p5@BCL3!0.68!5.13!BCL3;;chr12:26277956..26277980,-!p1@BHLHE41!0.67!14.87!BHLHE41;;chr14:21994337..21994442,-!p1@SALL2!0.67!11.28!SALL2;;chr8:86089369..86089408,+!p1@E2F5!0.66!10.77!E2F5;;chr14:57277163..57277168,-!p4@OTX2!0.66!3.59!OTX2;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.59!FOXL1;;chr2:45168997..45169020,+!p4@SIX3!0.66!3.59!SIX3;;chr2:5832493..5832507,+!p2@SOX11!0.66!3.59!SOX11;;chr3:128206762..128206781,-!p2@GATA2!0.65!25.13!GATA2;;chr15:66994561..66994597,+!p2@SMAD6!0.65!9.23!SMAD6;;chr3:12329358..12329393,+!p3@PPARG!0.64!9.23!PPARG;;chr20:6748325..6748352,+!p1@BMP2!0.64!5.13!BMP2;;chr19:48325184..48325211,+!p1@CRX!0.64!3.33!CRX;;chr12:125003087..125003141,-!p4@NCOR2!0.63!4.36!NCOR2;;chr3:12330560..12330579,+!p1@PPARG!0.63!3.85!PPARG;;chr19:53496768..53496799,-!p1@ZNF702P!0.62!5.39!ZNF702P;;chr13:37494248..37494260,-!p3@SMAD9!0.61!3.08!SMAD9;;chr15:66994718..66994729,+!p4@SMAD6!0.61!3.08!SMAD6;;chr17:7493405..7493419,-!p1@SOX15!0.61!3.08!SOX15;;chr20:42295713..42295738,+!p2@MYBL2!0.60!21.03!MYBL2;;chr9:14082760..14082775,-!p6@NFIB!0.60!5.39!NFIB;;chr19:49140609..49140643,-!p1@DBP!0.59!19.49!DBP;;chr15:37392724..37392757,-!p1@MEIS2!0.59!15.64!MEIS2;;chr1:935467..935484,-!p1@HES4!0.58!14.87!HES4;;chr19:22034809..22034878,-!p2@ZNF43!0.58!11.54!ZNF43;;chr19:49864746..49864780,-!p2@TEAD2!0.58!4.10!TEAD2;;chr12:26277817..26277863,-!p2@BHLHE41!0.58!4.10!BHLHE41;;chr10:48355030..48355090,+!p1@ZNF488!0.58!3.85!ZNF488;;chr15:67391010..67391046,+!p13@SMAD3!0.58!2.82!SMAD3;;chr2:100721328..100721348,-!p4@AFF3!0.58!2.82!AFF3;;chr2:45169172..45169177,+!p11@SIX3!0.58!2.82!SIX3;;chr2:45169233..45169244,+!p10@SIX3!0.58!2.82!SIX3;;chr19:47538560..47538591,+!p2@NPAS1!0.58!2.82!NPAS1;;chr19:49140595..49140607,-!p3@DBP!0.57!4.10!DBP;;chr5:174151553..174151610,+!p1@MSX2!0.56!4.87!MSX2;;chr17:38465413..38465438,+!p5@RARA!0.56!4.62!RARA;;chr15:66994885..66994904,+!p7@SMAD6!0.55!2.56!SMAD6;;chr11:17741084..17741094,+!p3@MYOD1!0.55!2.56!MYOD1;;chr11:17741111..17741124,+!p1@MYOD1!0.55!2.56!MYOD1;;chr3:12329339..12329356,+!p5@PPARG!0.55!2.56!PPARG;;chr9:126774091..126774098,+!p4@LHX2!0.55!2.56!LHX2;;chr5:133450365..133450444,+!p1@TCF7!0.54!13.85!TCF7;;chr17:41623692..41623715,-!p1@ETV4!0.54!13.08!ETV4;;chr8:86089417..86089440,+!p2@E2F5!0.54!5.64!E2F5;;chr19:22817119..22817145,+!p1@ZNF492!0.54!4.62!ZNF492;;chr19:57183114..57183145,-!p1@ZNF835!0.54!2.82!ZNF835;;chr20:42295745..42295765,+!p1@MYBL2!0.53!50.52!MYBL2;;chr15:67357924..67357952,+!p2@SMAD3!0.53!20.00!SMAD3;;chr6:31869828..31869880,-!p1@ZBTB12!0.53!5.13!ZBTB12;;chr12:66218003..66218018,+!p9@HMGA2!0.53!3.08!HMGA2;;chr20:30193083..30193098,+!p1@ID1!0.52!242.86!ID1;;chr10:77161504..77161530,-!p1@ZNF503!0.52!39.49!ZNF503;;chr5:72744562..72744573,-!p3@FOXD1!0.52!3.08!FOXD1;;chr5:174151612..174151633,+!p2@MSX2!0.52!2.31!MSX2;;chr6:134210243..134210257,+!p1@TCF21!0.52!2.31!TCF21;;chr12:125003168..125003180,-!p15@NCOR2!0.52!2.31!NCOR2;;chr12:66218420..66218439,+!p12@HMGA2!0.52!2.31!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.52!2.31!HMGA2;;chr1:23885981..23886002,-!p1@ID3!0.51!521.88!ID3;;chr5:92918956..92918969,+!p4@NR2F1!0.51!2.56!NR2F1;;chr20:2673383..2673441,+!p1@EBF4!0.50!3.85!EBF4;;chr17:38465441..38465481,+!p6@RARA!0.50!2.82!RARA;;chr12:26277929..26277955,-!p3@BHLHE41!0.49!3.33!BHLHE41;;chr15:37392094..37392116,-!p6@MEIS2!0.49!2.82!MEIS2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.49!2.82!L3MBTL4;;chr6:155635583..155635644,-!p1@TFB1M!0.48!35.39!TFB1M;;chr7:64838754..64838778,+!p1@ZNF92!0.48!25.90!ZNF92;;chr1:247171347..247171366,-!p2@ZNF695!0.48!4.36!ZNF695;;chr12:125002861..125002894,-!p7@NCOR2!0.48!3.33!NCOR2;;chr19:58545454..58545498,+!p1@ZSCAN1!0.48!2.05!ZSCAN1;;chr1:2985566..2985608,+!p3@PRDM16!0.48!2.05!PRDM16;;chr1:2985726..2985752,+!p2@PRDM16!0.48!2.05!PRDM16;;chr22:31739291..31739311,-!p2@PATZ1!0.48!2.05!PATZ1;;chr1:8938766..8938774,-!p2@ENO1!0.47!184.90!ENO1;;chr12:2986275..2986363,-!p1@FOXM1!0.47!26.41!FOXM1;;chr16:88519669..88519726,+!p1@ZFPM1!0.47!23.59!ZFPM1;;chr12:124873852..124873881,-!p3@NCOR2!0.47!15.64!NCOR2;;chr11:46299199..46299233,+!p1@CREB3L1!0.47!13.34!CREB3L1;;chr7:150065733..150065752,+!p4@REPIN1,p4@ZNF775!0.47!2.56!ZNF775;;chr15:37390374..37390422,-!p9@MEIS2!0.47!2.56!MEIS2;;chr19:23299814..23299844,+!p1@ZNF730!0.47!2.56!ZNF730;;chr12:54785054..54785072,-!p4@ZNF385A!0.47!2.31!ZNF385A;;chr1:170632285..170632309,+!p1@PRRX1!0.47!2.31!PRRX1;;chr20:32274179..32274213,-!p1@E2F1!0.46!16.93!E2F1;;chr7:150076406..150076456,+!p1@ZNF775!0.46!11.54!ZNF775;;chr17:41277372..41277418,-!p1@BRCA1!0.46!8.98!BRCA1;;chr2:46524897..46524911,+!p2@EPAS1!0.46!6.67!EPAS1;;chr19:20188776..20188826,+!p1@ZNF90!0.46!6.41!ZNF90;;chr17:41623009..41623053,-!p4@ETV4!0.46!3.59!ETV4;;chr4:57522166..57522260,-!p2@HOPX!0.46!2.31!HOPX;;chr12:66218836..66218888,+!p1@HMGA2!0.45!23.59!HMGA2;;chr3:141747459..141747475,-!p1@TFDP2!0.45!20.77!TFDP2;;chr12:2986206..2986258,-!p2@FOXM1!0.45!14.87!FOXM1;;chr10:77161533..77161546,-!p2@ZNF503!0.45!9.49!ZNF503;;chr17:38498594..38498661,+!p2@RARA!0.45!7.95!RARA;;chr8:67525443..67525459,-!p2@MYBL1!0.45!3.08!MYBL1;;chr6:1312155..1312187,+!p2@FOXQ1!0.45!1.80!FOXQ1;;chr7:101917447..101917479,+!p4@CUX1!0.45!1.80!CUX1;;chr17:46132044..46132080,+!p4@NFE2L1!0.45!1.80!NFE2L1;;chr19:22605136..22605154,-!p1@ZNF98!0.45!1.80!ZNF98;;chr9:22447422..22447483,+!p1@DMRTA1!0.45!1.80!DMRTA1;;chr2:145275947..145275981,-!p10@ZEB2!0.45!1.80!ZEB2;;chr2:63277978..63277995,+!p2@OTX1!0.45!1.80!OTX1;;chr3:141121820..141121838,+!p9@ZBTB38!0.45!1.80!ZBTB38;;chr3:141150883..141150961,+!p6@ZBTB38!0.45!1.80!ZBTB38;;chr11:31832610..31832639,-!p5@PAX6!0.45!1.80!PAX6;;chr12:66218469..66218477,+!p16@HMGA2!0.45!1.80!HMGA2;;chr19:49140255..49140268,-!p9@DBP!0.45!1.80!DBP;;chr19:58545369..58545404,+!p2@ZSCAN1!0.45!1.80!ZSCAN1;;chr3:193853927..193853944,+!p1@HES1!0.44!82.32!HES1;;chr13:73633131..73633149,+!p1@KLF5!0.44!26.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002586;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000966;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001781;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007625 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor0.CNhs10842.11215-116A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor0.CNhs10842.11215-116A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor0.CNhs10842.11215-116A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor0.CNhs10842.11215-116A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor0.CNhs10842.11215-116A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11215-116A9 | |id=FF:11215-116A9 | ||
|is_a=EFO:0002091;;FF:0000158 | |is_a=EFO:0002091;;FF:0000158 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10842 | |||
|library_id_phase_based=2:CNhs10842 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11215 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.CCGTCC.11215 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11215 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.CCGTCC.11215 | |||
|name=Retinal Pigment Epithelial Cells, donor0 | |name=Retinal Pigment Epithelial Cells, donor0 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 43: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10842,LSID700,release009,COMPLETED | |profile_hcage=CNhs10842,LSID700,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.089905147355422,0,0,0,0,-0.061172776168247,0,-0.178216878275375,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0944908321788258,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0559945696105909,0,0,0,0,0,0,0,0,0.280976718137364,0,0,0,0.099145253918139,0,0.0114846210516754,0,-0.0969923612426051,0,0,0.00180162670504215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0220445301092218,0,0,0,0,0,0,0.0292405933078452,0,0,0,-0.039327902279106,-0.0578990656519045,0,0,0,0.099145253918139,-0.0980353512377064,-0.138477200800895,0,0,0,0.099145253918139,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082808073474162,0,0,0,-0.138075567776705,-0.371277147169383,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=6545 | |rna_catalog_number=6545 | ||
Line 57: | Line 81: | ||
|rna_tube_id=116A9 | |rna_tube_id=116A9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10015.CCGTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 79: | Line 105: | ||
|top_motifs=NKX2-1,4:2.68317645028;PAX1,9:1.85433246768;CRX:1.75702217167;ESRRA:1.6838650169;NANOG:1.67452245044;EBF1:1.66539599543;HOX{A6,A7,B6,B7}:1.49704385594;PAX8:1.3299923239;NFY{A,B,C}:1.24655033932;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.23478065362;ADNP_IRX_SIX_ZHX:1.18736604179;MYOD1:1.09100101281;CDC5L:1.04346009803;E2F1..5:1.01177980321;PPARG:1.00937560671;PBX1:0.929655727237;VSX1,2:0.927197660876;STAT5{A,B}:0.904081302685;GTF2A1,2:0.878071322124;SP1:0.875365046466;NR3C1:0.86374905631;RXR{A,B,G}:0.841386245937;CDX1,2,4:0.797011398923;GFI1:0.794842726016;HSF1,2:0.785436994354;TLX1..3_NFIC{dimer}:0.784789901449;EN1,2:0.768002478836;RBPJ:0.767926873718;bHLH_family:0.758738698841;ONECUT1,2:0.752461698965;TFDP1:0.741096955397;ZIC1..3:0.718867038084;SREBF1,2:0.67696963461;PRRX1,2:0.671821526867;T:0.6669612529;ARID5B:0.630688325092;NKX6-1,2:0.622106808567;ZNF148:0.601030879217;ZNF423:0.595999626665;PDX1:0.595505274504;ZNF143:0.54963875912;PAX6:0.544763709867;NR5A1,2:0.540813346855;NFIL3:0.530058741388;HOX{A5,B5}:0.502593699723;RFX1:0.491703282934;TEAD1:0.469799411106;HAND1,2:0.44694050897;XCPE1{core}:0.433978737367;NRF1:0.422115667987;SOX17:0.415072607941;PAX5:0.405793907114;OCT4_SOX2{dimer}:0.404313348249;SOX{8,9,10}:0.384100204881;ZEB1:0.376264851523;HNF4A_NR2F1,2:0.374130958425;HOXA9_MEIS1:0.367928934991;GCM1,2:0.355729710196;LHX3,4:0.354280053386;NKX2-2,8:0.351065673765;JUN:0.342281233476;TEF:0.334625028874;TFAP4:0.327857543952;LMO2:0.286541062927;SOX2:0.284954500362;TBP:0.283940882625;POU1F1:0.27820712888;NKX2-3_NKX2-5:0.267097622653;YY1:0.266350011772;SNAI1..3:0.250445495711;HOX{A4,D4}:0.248792809535;FOXL1:0.239151732927;MYB:0.232818998675;TFAP2{A,C}:0.226414011581;FOSL2:0.225908336025;GFI1B:0.221365900424;TP53:0.204945941965;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.18484745497;IKZF2:0.181788856956;POU5F1:0.165768495073;LEF1_TCF7_TCF7L1,2:0.165067094066;FOXQ1:0.15783857129;FOXM1:0.154235835123;PATZ1:0.154007201084;MYBL2:0.153776930887;HIC1:0.153768832368;NKX3-2:0.135939195073;AIRE:0.131817022386;POU3F1..4:0.100481398888;MEF2{A,B,C,D}:0.0829848507459;EVI1:0.0819193884061;ELK1,4_GABP{A,B1}:0.0433517710345;TFAP2B:0.0390086610038;FOS_FOS{B,L1}_JUN{B,D}:0.0352271463445;FOX{I1,J2}:0.0284938063655;GTF2I:0.02553303692;ZFP161:0.0180976339815;BACH2:0.0112576075557;NFE2L2:0.0111148083271;HES1:0.00966494472347;RORA:-0.0106282918323;NFE2:-0.0197011627811;ALX1:-0.0256887922916;RXRA_VDR{dimer}:-0.0292538846424;HNF1A:-0.0363157716683;MAZ:-0.0364982445493;NR6A1:-0.0376567411042;KLF4:-0.0444375376441;POU2F1..3:-0.0466829243915;NR1H4:-0.0582032574242;EGR1..3:-0.0697737685958;SMAD1..7,9:-0.0842100826019;RREB1:-0.102342418306;TAL1_TCF{3,4,12}:-0.102888914012;NFATC1..3:-0.104875815153;GLI1..3:-0.10749045517;FOX{F1,F2,J1}:-0.110778479252;UFEwm:-0.119185836259;TBX4,5:-0.148534230901;RFX2..5_RFXANK_RFXAP:-0.169619454999;XBP1:-0.179550853735;PAX4:-0.18549382308;CUX2:-0.214758937915;FOXP1:-0.222996931222;BREu{core}:-0.223131786929;ZBTB6:-0.232462954677;NHLH1,2:-0.236175428713;PRDM1:-0.258211402836;PITX1..3:-0.260200183223;STAT1,3:-0.276321786149;SOX5:-0.300729193203;SPZ1:-0.301722571596;FOXD3:-0.304189086247;REST:-0.317515635566;IKZF1:-0.322489598743;GATA6:-0.329996073198;ALX4:-0.338222037018;SRF:-0.395515389693;MTE{core}:-0.4117048674;FOXA2:-0.435964513355;TFCP2:-0.441231373874;HLF:-0.469489055906;RUNX1..3:-0.470554303473;FOXP3:-0.473646017052;MTF1:-0.476035283297;TOPORS:-0.496138532071;GZF1:-0.499762422767;NFIX:-0.51138382727;MZF1:-0.542810671834;NFKB1_REL_RELA:-0.544241363964;SPIB:-0.547109502005;PAX3,7:-0.560015412524;FOXO1,3,4:-0.560193725736;MYFfamily:-0.57044594724;CREB1:-0.572576731942;AHR_ARNT_ARNT2:-0.580948054131;TGIF1:-0.580972792706;POU6F1:-0.601619445303;ATF2:-0.648272715273;GATA4:-0.652065377467;HMGA1,2:-0.659249741076;HIF1A:-0.694305625788;SPI1:-0.708441363097;NFE2L1:-0.709614001274;FOX{D1,D2}:-0.712320700153;EP300:-0.716806165636;CEBPA,B_DDIT3:-0.73209883495;NKX3-1:-0.73302979293;ATF5_CREB3:-0.747630220243;DBP:-0.754201825132;ATF6:-0.77717858544;ETS1,2:-0.780469804463;ATF4:-0.788456915466;STAT2,4,6:-0.798557608743;IRF1,2:-0.801514162411;PAX2:-0.809106690962;MED-1{core}:-0.826862281966;BPTF:-0.840741963843;ELF1,2,4:-0.851075284778;ZBTB16:-0.860053907783;HMX1:-0.894181617905;ZNF384:-0.897520315789;IRF7:-0.898838103557;DMAP1_NCOR{1,2}_SMARC:-0.936356582474;FOXN1:-0.952215277286;HBP1_HMGB_SSRP1_UBTF:-0.95276585209;AR:-0.967967034195;ESR1:-1.01278002399;NANOG{mouse}:-1.31112053793;MAFB:-1.32474932186;TLX2:-1.48692943529;ZNF238:-1.53866817527 | |top_motifs=NKX2-1,4:2.68317645028;PAX1,9:1.85433246768;CRX:1.75702217167;ESRRA:1.6838650169;NANOG:1.67452245044;EBF1:1.66539599543;HOX{A6,A7,B6,B7}:1.49704385594;PAX8:1.3299923239;NFY{A,B,C}:1.24655033932;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.23478065362;ADNP_IRX_SIX_ZHX:1.18736604179;MYOD1:1.09100101281;CDC5L:1.04346009803;E2F1..5:1.01177980321;PPARG:1.00937560671;PBX1:0.929655727237;VSX1,2:0.927197660876;STAT5{A,B}:0.904081302685;GTF2A1,2:0.878071322124;SP1:0.875365046466;NR3C1:0.86374905631;RXR{A,B,G}:0.841386245937;CDX1,2,4:0.797011398923;GFI1:0.794842726016;HSF1,2:0.785436994354;TLX1..3_NFIC{dimer}:0.784789901449;EN1,2:0.768002478836;RBPJ:0.767926873718;bHLH_family:0.758738698841;ONECUT1,2:0.752461698965;TFDP1:0.741096955397;ZIC1..3:0.718867038084;SREBF1,2:0.67696963461;PRRX1,2:0.671821526867;T:0.6669612529;ARID5B:0.630688325092;NKX6-1,2:0.622106808567;ZNF148:0.601030879217;ZNF423:0.595999626665;PDX1:0.595505274504;ZNF143:0.54963875912;PAX6:0.544763709867;NR5A1,2:0.540813346855;NFIL3:0.530058741388;HOX{A5,B5}:0.502593699723;RFX1:0.491703282934;TEAD1:0.469799411106;HAND1,2:0.44694050897;XCPE1{core}:0.433978737367;NRF1:0.422115667987;SOX17:0.415072607941;PAX5:0.405793907114;OCT4_SOX2{dimer}:0.404313348249;SOX{8,9,10}:0.384100204881;ZEB1:0.376264851523;HNF4A_NR2F1,2:0.374130958425;HOXA9_MEIS1:0.367928934991;GCM1,2:0.355729710196;LHX3,4:0.354280053386;NKX2-2,8:0.351065673765;JUN:0.342281233476;TEF:0.334625028874;TFAP4:0.327857543952;LMO2:0.286541062927;SOX2:0.284954500362;TBP:0.283940882625;POU1F1:0.27820712888;NKX2-3_NKX2-5:0.267097622653;YY1:0.266350011772;SNAI1..3:0.250445495711;HOX{A4,D4}:0.248792809535;FOXL1:0.239151732927;MYB:0.232818998675;TFAP2{A,C}:0.226414011581;FOSL2:0.225908336025;GFI1B:0.221365900424;TP53:0.204945941965;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.18484745497;IKZF2:0.181788856956;POU5F1:0.165768495073;LEF1_TCF7_TCF7L1,2:0.165067094066;FOXQ1:0.15783857129;FOXM1:0.154235835123;PATZ1:0.154007201084;MYBL2:0.153776930887;HIC1:0.153768832368;NKX3-2:0.135939195073;AIRE:0.131817022386;POU3F1..4:0.100481398888;MEF2{A,B,C,D}:0.0829848507459;EVI1:0.0819193884061;ELK1,4_GABP{A,B1}:0.0433517710345;TFAP2B:0.0390086610038;FOS_FOS{B,L1}_JUN{B,D}:0.0352271463445;FOX{I1,J2}:0.0284938063655;GTF2I:0.02553303692;ZFP161:0.0180976339815;BACH2:0.0112576075557;NFE2L2:0.0111148083271;HES1:0.00966494472347;RORA:-0.0106282918323;NFE2:-0.0197011627811;ALX1:-0.0256887922916;RXRA_VDR{dimer}:-0.0292538846424;HNF1A:-0.0363157716683;MAZ:-0.0364982445493;NR6A1:-0.0376567411042;KLF4:-0.0444375376441;POU2F1..3:-0.0466829243915;NR1H4:-0.0582032574242;EGR1..3:-0.0697737685958;SMAD1..7,9:-0.0842100826019;RREB1:-0.102342418306;TAL1_TCF{3,4,12}:-0.102888914012;NFATC1..3:-0.104875815153;GLI1..3:-0.10749045517;FOX{F1,F2,J1}:-0.110778479252;UFEwm:-0.119185836259;TBX4,5:-0.148534230901;RFX2..5_RFXANK_RFXAP:-0.169619454999;XBP1:-0.179550853735;PAX4:-0.18549382308;CUX2:-0.214758937915;FOXP1:-0.222996931222;BREu{core}:-0.223131786929;ZBTB6:-0.232462954677;NHLH1,2:-0.236175428713;PRDM1:-0.258211402836;PITX1..3:-0.260200183223;STAT1,3:-0.276321786149;SOX5:-0.300729193203;SPZ1:-0.301722571596;FOXD3:-0.304189086247;REST:-0.317515635566;IKZF1:-0.322489598743;GATA6:-0.329996073198;ALX4:-0.338222037018;SRF:-0.395515389693;MTE{core}:-0.4117048674;FOXA2:-0.435964513355;TFCP2:-0.441231373874;HLF:-0.469489055906;RUNX1..3:-0.470554303473;FOXP3:-0.473646017052;MTF1:-0.476035283297;TOPORS:-0.496138532071;GZF1:-0.499762422767;NFIX:-0.51138382727;MZF1:-0.542810671834;NFKB1_REL_RELA:-0.544241363964;SPIB:-0.547109502005;PAX3,7:-0.560015412524;FOXO1,3,4:-0.560193725736;MYFfamily:-0.57044594724;CREB1:-0.572576731942;AHR_ARNT_ARNT2:-0.580948054131;TGIF1:-0.580972792706;POU6F1:-0.601619445303;ATF2:-0.648272715273;GATA4:-0.652065377467;HMGA1,2:-0.659249741076;HIF1A:-0.694305625788;SPI1:-0.708441363097;NFE2L1:-0.709614001274;FOX{D1,D2}:-0.712320700153;EP300:-0.716806165636;CEBPA,B_DDIT3:-0.73209883495;NKX3-1:-0.73302979293;ATF5_CREB3:-0.747630220243;DBP:-0.754201825132;ATF6:-0.77717858544;ETS1,2:-0.780469804463;ATF4:-0.788456915466;STAT2,4,6:-0.798557608743;IRF1,2:-0.801514162411;PAX2:-0.809106690962;MED-1{core}:-0.826862281966;BPTF:-0.840741963843;ELF1,2,4:-0.851075284778;ZBTB16:-0.860053907783;HMX1:-0.894181617905;ZNF384:-0.897520315789;IRF7:-0.898838103557;DMAP1_NCOR{1,2}_SMARC:-0.936356582474;FOXN1:-0.952215277286;HBP1_HMGB_SSRP1_UBTF:-0.95276585209;AR:-0.967967034195;ESR1:-1.01278002399;NANOG{mouse}:-1.31112053793;MAFB:-1.32474932186;TLX2:-1.48692943529;ZNF238:-1.53866817527 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11215-116A9;search_select_hide=table117:FF:11215-116A9 | |||
}} | }} |
Latest revision as of 16:24, 3 June 2020
Name: | Retinal Pigment Epithelial Cells, donor0 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10842 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10842
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10842
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.285 |
10 | 10 | 0.00823 |
100 | 100 | 0.266 |
101 | 101 | 0.364 |
102 | 102 | 0.419 |
103 | 103 | 0.932 |
104 | 104 | 0.63 |
105 | 105 | 0.407 |
106 | 106 | 0.00172 |
107 | 107 | 0.435 |
108 | 108 | 0.936 |
109 | 109 | 0.369 |
11 | 11 | 0.851 |
110 | 110 | 0.788 |
111 | 111 | 0.0385 |
112 | 112 | 0.00104 |
113 | 113 | 0.0301 |
114 | 114 | 0.0429 |
115 | 115 | 0.88 |
116 | 116 | 0.716 |
117 | 117 | 0.0329 |
118 | 118 | 0.575 |
119 | 119 | 0.145 |
12 | 12 | 0.671 |
120 | 120 | 0.635 |
121 | 121 | 0.751 |
122 | 122 | 0.447 |
123 | 123 | 0.0709 |
124 | 124 | 0.271 |
125 | 125 | 0.893 |
126 | 126 | 0.32 |
127 | 127 | 0.933 |
128 | 128 | 0.168 |
129 | 129 | 0.604 |
13 | 13 | 0.485 |
130 | 130 | 0.0101 |
131 | 131 | 0.116 |
132 | 132 | 0.975 |
133 | 133 | 0.0729 |
134 | 134 | 0.783 |
135 | 135 | 0.0313 |
136 | 136 | 0.143 |
137 | 137 | 0.245 |
138 | 138 | 2.62229e-4 |
139 | 139 | 0.00773 |
14 | 14 | 0.571 |
140 | 140 | 0.0287 |
141 | 141 | 0.232 |
142 | 142 | 0.734 |
143 | 143 | 0.151 |
144 | 144 | 0.249 |
145 | 145 | 0.386 |
146 | 146 | 0.902 |
147 | 147 | 0.253 |
148 | 148 | 0.111 |
149 | 149 | 0.904 |
15 | 15 | 0.794 |
150 | 150 | 0.48 |
151 | 151 | 0.554 |
152 | 152 | 0.997 |
153 | 153 | 0.469 |
154 | 154 | 0.38 |
155 | 155 | 0.237 |
156 | 156 | 0.35 |
157 | 157 | 0.0557 |
158 | 158 | 0.0996 |
159 | 159 | 0.651 |
16 | 16 | 0.685 |
160 | 160 | 0.894 |
161 | 161 | 0.877 |
162 | 162 | 0.253 |
163 | 163 | 0.649 |
164 | 164 | 0.0287 |
165 | 165 | 0.0987 |
166 | 166 | 0.321 |
167 | 167 | 0.669 |
168 | 168 | 0.238 |
169 | 169 | 0.383 |
17 | 17 | 0.878 |
18 | 18 | 0.0523 |
19 | 19 | 0.419 |
2 | 2 | 0.476 |
20 | 20 | 0.709 |
21 | 21 | 0.416 |
22 | 22 | 0.605 |
23 | 23 | 0.0398 |
24 | 24 | 0.421 |
25 | 25 | 0.465 |
26 | 26 | 0.752 |
27 | 27 | 0.841 |
28 | 28 | 0.597 |
29 | 29 | 0.946 |
3 | 3 | 0.023 |
30 | 30 | 0.0744 |
31 | 31 | 0.748 |
32 | 32 | 0.007 |
33 | 33 | 0.405 |
34 | 34 | 0.601 |
35 | 35 | 0.262 |
36 | 36 | 0.904 |
37 | 37 | 0.411 |
38 | 38 | 0.84 |
39 | 39 | 0.848 |
4 | 4 | 0.863 |
40 | 40 | 0.0343 |
41 | 41 | 0.306 |
42 | 42 | 0.171 |
43 | 43 | 0.094 |
44 | 44 | 0.839 |
45 | 45 | 0.381 |
46 | 46 | 0.026 |
47 | 47 | 0.819 |
48 | 48 | 0.971 |
49 | 49 | 0.317 |
5 | 5 | 0.123 |
50 | 50 | 0.352 |
51 | 51 | 0.649 |
52 | 52 | 0.656 |
53 | 53 | 0.592 |
54 | 54 | 0.88 |
55 | 55 | 0.12 |
56 | 56 | 0.827 |
57 | 57 | 0.682 |
58 | 58 | 0.00305 |
59 | 59 | 0.345 |
6 | 6 | 0.765 |
60 | 60 | 0.012 |
61 | 61 | 0.888 |
62 | 62 | 0.00225 |
63 | 63 | 0.125 |
64 | 64 | 0.416 |
65 | 65 | 0.262 |
66 | 66 | 0.0252 |
67 | 67 | 0.958 |
68 | 68 | 0.77 |
69 | 69 | 0.0649 |
7 | 7 | 0.961 |
70 | 70 | 0.0757 |
71 | 71 | 0.0954 |
72 | 72 | 0.182 |
73 | 73 | 0.427 |
74 | 74 | 0.243 |
75 | 75 | 0.283 |
76 | 76 | 0.14 |
77 | 77 | 0.307 |
78 | 78 | 0.599 |
79 | 79 | 0.0306 |
8 | 8 | 0.707 |
80 | 80 | 0.157 |
81 | 81 | 0.209 |
82 | 82 | 0.0841 |
83 | 83 | 0.0389 |
84 | 84 | 0.921 |
85 | 85 | 0.0442 |
86 | 86 | 0.187 |
87 | 87 | 0.147 |
88 | 88 | 0.735 |
89 | 89 | 0.972 |
9 | 9 | 0.268 |
90 | 90 | 0.714 |
91 | 91 | 0.0219 |
92 | 92 | 0.0174 |
93 | 93 | 0.635 |
94 | 94 | 0.0768 |
95 | 95 | 0.374 |
96 | 96 | 0.45 |
97 | 97 | 0.975 |
98 | 98 | 0.103 |
99 | 99 | 0.0502 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10842
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000158 human retinal pigment epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000255 (eukaryotic cell)
0000149 (visual pigment cell)
0002586 (retinal pigment epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000966 (retina)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0005388 (photoreceptor array)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0001781 (layer of retina)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001782 (pigmented layer of retina)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001802 (posterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000158 (human retinal pigment epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA