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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004928
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004928
|accession_numbers=CAGE;DRX008231;DRR009103;DRZ000528;DRZ001913;DRZ011878;DRZ013263
|accession_numbers_RNASeq=sRNA-Seq;DRX037110;DRR041476;DRZ007118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0010260,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0010260,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543,CL:0002618
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543,CL:0002618
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr21:39870339..39870443,-!p1@ERG!2.39!242.81!ERG;;chr20:62680984..62680999,-!p1@SOX18!2.25!228.43!SOX18;;chr18:53068911..53068935,-!p4@TCF4!2.08!134.84!TCF4;;chr8:10588010..10588030,-!p1@SOX7!1.94!86.44!SOX7;;chr12:96588368..96588394,+!p3@ELK3!1.88!191.64!ELK3;;chr3:169381420..169381535,-!p1@MECOM!1.65!50.72!MECOM;;chr17:6926362..6926377,+!p1@BCL6B!1.62!41.17!BCL6B;;chr8:55370487..55370503,+!p1@SOX17!1.51!31.61!SOX17;;chr7:27205106..27205134,-!p2@HOXA9!1.43!25.99!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!1.43!25.72!HOXA9;;chr18:22932080..22932170,-!p1@ZNF521!1.40!99.21!ZNF521;;chr17:46682321..46682362,-!p1@HOXB6!1.36!22.06!HOXB6;;chr6:34204921..34204939,+!p3@HMGA1!1.33!595.72!HMGA1;;chr18:53068982..53068993,-!p20@TCF4!1.24!16.52!TCF4;;chr10:94449703..94449718,+!p1@HHEX!1.23!60.63!HHEX;;chr7:15726243..15726293,-!p2@MEOX2!1.22!15.45!MEOX2;;chr17:46688334..46688385,-!p1@HOXB7!1.21!21.79!HOXB7;;chr17:46655672..46655697,-!p3@HOXB4!1.20!14.91!HOXB4;;chr19:46801639..46801699,+!p1@HIF3A!1.20!14.91!HIF3A;;chr9:16705069..16705086,-!p3@BNC2!1.20!14.73!BNC2;;chr13:72441315..72441454,-!p1@DACH1!1.19!29.20!DACH1;;chr5:71803177..71803255,-!p1@ZNF366!1.16!13.31!ZNF366;;chr7:115670804..115670825,-!p1@TFEC!1.15!13.04!TFEC;;chr7:27192185..27192209,-!p1@HOXA3!1.14!12.95!HOXA3;;chr19:53496768..53496799,-!p1@ZNF702P!1.12!18.93!ZNF702P;;chr3:168864315..168864339,-!p2@MECOM!1.11!19.74!MECOM;;chr5:88178983..88179012,-!p1@MEF2C!1.10!89.66!MEF2C;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.24!HMGA2;;chr7:15726296..15726315,-!p1@MEOX2!1.10!11.52!MEOX2;;chr6:28321971..28321995,-!p1@ZNF323!1.08!10.98!ZNF323;;chr12:66218255..66218304,+!p3@HMGA2!1.06!28.40!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.45!KDM5D;;chr19:13213511..13213545,-!p2@LYL1!1.04!10.81!LYL1;;chr19:13213399..13213414,-!p6@LYL1!1.01!9.20!LYL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.99!23.22!ZFPM2;;chr1:200008734..200008765,+!p2@NR5A2!0.99!8.75!NR5A2;;chr2:176994408..176994492,+!p1@HOXD8!0.99!8.75!HOXD8;;chr2:177053386..177053402,+!p1@HOXD1!0.99!8.66!HOXD1;;chr9:14314131..14314147,-!p2@NFIB!0.98!49.11!NFIB;;chr12:66218212..66218244,+!p5@HMGA2!0.97!12.14!HMGA2;;chr10:31288398..31288455,-!p2@ZNF438!0.96!9.64!ZNF438;;chr11:128563948..128564003,+!p1@FLI1!0.95!98.77!FLI1;;chr18:53068940..53068951,-!p21@TCF4!0.95!7.95!TCF4;;chr18:53177984..53178004,-!p17@TCF4!0.95!7.95!TCF4;;chr18:53068893..53068902,-!p28@TCF4!0.93!7.50!TCF4;;chr11:128563652..128563689,+!p3@FLI1!0.93!7.50!FLI1;;chr4:146402843..146402864,+!p3@SMAD1!0.92!15.00!SMAD1;;chr9:124991204..124991246,-!p1@LHX6!0.92!7.23!LHX6;;chr7:27183291..27183324,-!p1@HOXA5!0.92!7.23!HOXA5;;chr10:31288370..31288393,-!p3@ZNF438!0.92!7.23!ZNF438;;chr16:86600426..86600441,+!p1@FOXC2!0.91!18.13!FOXC2;;chr13:72441074..72441172,-!p2@DACH1!0.90!6.97!DACH1;;chr6:34204672..34204692,+!p1@HMGA1!0.89!796.91!HMGA1;;chr17:46655704..46655718,-!p2@HOXB4!0.89!10.36!HOXB4;;chr1:158979686..158979745,+!p1@IFI16!0.88!226.64!IFI16;;chr3:168865194..168865245,-!p3@MECOM!0.88!8.57!MECOM;;chr9:14314566..14314618,-!p1@NFIB!0.86!78.94!NFIB;;chr15:96873984..96873999,+!p3@NR2F2!0.85!47.51!NR2F2;;chr3:128206762..128206781,-!p2@GATA2!0.84!39.47!GATA2;;chr20:50159198..50159299,-!p1@NFATC2!0.84!8.84!NFATC2;;chr4:146403912..146403972,+!p5@SMAD1!0.84!7.77!SMAD1;;chr2:177001290..177001315,+!p1@HOXD3!0.84!5.89!HOXD3;;chr1:47695003..47695042,-!p2@TAL1!0.83!5.80!TAL1;;chr3:25469815..25469866,+!p3@RARB!0.83!5.72!RARB;;chr18:53257001..53257015,-!p5@TCF4!0.82!9.91!TCF4;;chr18:22932004..22932021,-!p2@ZNF521!0.82!5.63!ZNF521;;chr8:93107451..93107468,-!p2@RUNX1T1!0.82!5.54!RUNX1T1;;chr9:14083467..14083483,-!p4@NFIB!0.81!14.20!NFIB;;chr17:46690839..46690884,-!p1@HOXB8!0.81!5.45!HOXB8;;chr19:46800289..46800327,+!p2@HIF3A!0.81!5.45!HIF3A;;chr15:96873921..96873946,+!p1@NR2F2!0.80!163.78!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.79!25.81!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.18!ZFY;;chr1:200011711..200011752,+!p3@NR5A2!0.78!5.00!NR5A2;;chr22:19748231..19748317,+!p1@TBX1!0.77!4.91!TBX1;;chr12:66218836..66218888,+!p1@HMGA2!0.76!49.03!HMGA2;;chr1:205601064..205601087,-!p4@ELK4!0.76!9.73!ELK4;;chr17:46687959..46688007,-!p2@HOXB7!0.76!6.88!HOXB7;;chr7:27196217..27196246,-!p2@HOXA7!0.75!4.64!HOXA7;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.64!HOXA7;;chr1:158979792..158979814,+!p2@IFI16!0.74!47.78!IFI16;;chr12:66218152..66218174,+!p10@HMGA2!0.74!4.91!HMGA2;;chr12:80084018..80084035,-!p17@PAWR!0.74!4.55!PAWR;;chr10:94449675..94449694,+!p2@HHEX!0.73!12.77!HHEX;;chr4:299227..299272,-!p1@ZNF732!0.73!4.38!ZNF732;;chr17:47892398..47892407,+!p2@KAT7!0.73!4.38!KAT7;;chr5:88179017..88179046,-!p2@MEF2C!0.72!19.02!MEF2C;;chr9:14314106..14314119,-!p5@NFIB!0.72!8.13!NFIB;;chr20:50721803..50721857,-!p2@ZFP64!0.72!6.97!ZFP64;;chr7:27213893..27213954,-!p1@HOXA10!0.72!4.29!HOXA10;;chr7:15726220..15726236,-!p4@MEOX2!0.72!4.20!MEOX2;;chr7:27183263..27183284,-!p2@HOXA5!0.72!4.20!HOXA5;;chr13:72441506..72441562,-!p3@DACH1!0.72!4.20!DACH1;;chr10:8096631..8096660,+!p1@GATA3!0.71!5.09!GATA3;;chr2:46524537..46524553,+!p1@EPAS1!0.70!448.91!EPAS1;;chr15:96874012..96874042,+!p2@NR2F2!0.70!41.26!NR2F2;;chr6:130339710..130339745,+!p1@L3MBTL3!0.70!35.72!L3MBTL3;;chr9:14082760..14082775,-!p6@NFIB!0.70!7.05!NFIB;;chr19:53496806..53496848,-!p2@ZNF702P!0.70!6.34!ZNF702P;;chr6:85473156..85473210,-!p2@TBX18!0.70!5.00!TBX18;;chr1:47697539..47697573,-!p3@TAL1!0.70!4.02!TAL1;;chr9:14314522..14314556,-!p3@NFIB!0.69!10.00!NFIB;;chr4:57522166..57522260,-!p2@HOPX!0.69!4.55!HOPX;;chr5:88179195..88179224,-!p3@MEF2C!0.68!6.34!MEF2C;;chr7:27224842..27224872,-!p1@HOXA11!0.68!3.84!HOXA11;;chr11:128562372..128562397,+!p4@FLI1!0.68!3.84!FLI1;;chr3:25470156..25470227,+!p2@RARB!0.68!3.75!RARB;;chr13:41240737..41240787,-!p1@FOXO1!0.67!50.19!FOXO1;;chr18:53255415..53255491,-!p1@TCF4!0.67!36.26!TCF4;;chr18:53257027..53257052,-!p3@TCF4!0.67!16.70!TCF4;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.89!ETV4;;chrX:66763856..66763896,+!p1@AR!0.67!5.54!AR;;chr3:169381183..169381205,-!p4@MECOM!0.67!3.66!MECOM;;chr4:146402795..146402816,+!p7@SMAD1!0.66!5.09!SMAD1;;chr14:74256787..74256858,-!p6@C14orf43!0.66!3.57!C14orf43;;chr18:19749541..19749557,+!p1@GATA6!0.65!12.41!GATA6;;chr5:124082322..124082364,-!p1@ZNF608!0.65!9.82!ZNF608;;chr17:41277372..41277418,-!p1@BRCA1!0.64!14.02!BRCA1;;chr9:14313893..14313908,-!p7@NFIB!0.64!5.18!NFIB;;chr2:25475120..25475176,-!p2@DNMT3A!0.64!4.82!DNMT3A;;chr6:28321909..28321965,-!p3@ZNF323!0.64!3.39!ZNF323;;chr8:93115584..93115642,-!p5@RUNX1T1!0.64!3.39!RUNX1T1;;chr11:19262421..19262455,-!p3@E2F8!0.64!3.39!E2F8;;chr1:158979680..158979683,+!p9@IFI16!0.63!4.73!IFI16;;chr1:221052733..221052749,+!p2@HLX!0.63!4.46!HLX;;chr5:92918919..92918942,+!p1@NR2F1!0.62!16.70!NR2F1;;chr18:52989031..52989079,-!p2@TCF4!0.62!8.39!TCF4;;chr1:214161272..214161322,+!p1@PROX1!0.62!4.73!PROX1;;chr7:139741594..139741615,-!p5@PARP12!0.62!3.21!PARP12;;chr17:6926381..6926392,+!p2@BCL6B!0.62!3.21!BCL6B;;chr18:22931979..22931992,-!p3@ZNF521!0.62!3.21!ZNF521;;chr3:168864383..168864400,-!p7@MECOM!0.62!3.13!MECOM;;chr6:126112074..126112144,+!p1@NCOA7!0.61!49.11!NCOA7;;chr20:42295713..42295738,+!p2@MYBL2!0.61!21.61!MYBL2;;chr7:26191809..26191890,+!p1@NFE2L3!0.61!17.95!NFE2L3;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.61!16.43!TAL1;;chr19:58341656..58341694,+!p5@ZNF587!0.61!3.84!ZNF587;;chr7:27170359..27170381,-!p1@HOXA4!0.61!3.04!HOXA4;;chr13:41240717..41240735,-!p2@FOXO1!0.60!24.29!FOXO1;;chrX:66763815..66763854,+!p2@AR!0.60!4.11!AR;;chr12:2986275..2986363,-!p1@FOXM1!0.59!35.09!FOXM1;;chr19:49865646..49865718,-!p1@TEAD2!0.59!30.27!TEAD2;;chr3:178789522..178789564,-!p2@ZMAT3!0.59!25.63!ZMAT3;;chr17:41623692..41623715,-!p1@ETV4!0.59!14.65!ETV4;;chr10:8096772..8096787,+!p2@GATA3!0.59!3.57!GATA3;;chr13:72440901..72440968,-!p4@DACH1!0.59!2.86!DACH1;;chr4:146404119..146404158,+!p9@SMAD1!0.59!2.86!SMAD1;;chr12:2986206..2986258,-!p2@FOXM1!0.58!20.36!FOXM1;;chr15:96874145..96874166,+!p7@NR2F2!0.58!5.98!NR2F2;;chr3:33482052..33482116,-!p2@UBP1!0.58!4.73!UBP1;;chr18:52989565..52989623,-!p9@TCF4!0.58!3.75!TCF4;;chr13:79177703..79177729,-!p2@POU4F1!0.58!2.77!POU4F1;;chr4:146402827..146402839,+!p10@SMAD1!0.58!2.77!SMAD1;;chr15:96873861..96873872,+!p9@NR2F2!0.57!6.34!NR2F2;;chr3:25469724..25469773,+!p1@RARB!0.57!4.20!RARB;;chr5:124082580..124082603,-!p4@ZNF608!0.57!3.21!ZNF608;;chr5:88180342..88180365,-!p10@MEF2C!0.57!2.68!MEF2C;;chr11:19262461..19262476,-!p5@E2F8!0.57!2.68!E2F8;;chr14:55493763..55493824,-!p1@WDHD1!0.56!24.47!WDHD1;;chr10:45496320..45496336,+!p3@ZNF22!0.56!2.59!ZNF22;;chr12:85673977..85674015,+!p1@ALX1!0.56!2.59!ALX1;;chr7:27142290..27142310,-!p1@HOXA2!0.56!2.59!HOXA2;;chr15:50647274..50647336,-!p1@GABPB1!0.55!22.06!GABPB1;;chr15:57210961..57211012,+!p3@TCF12!0.55!9.73!TCF12;;chr12:80084167..80084197,-!p5@PAWR!0.55!7.05!PAWR;;chr12:66218378..66218401,+!p6@HMGA2!0.55!4.38!HMGA2;;chr10:31608127..31608156,+!p1@ZEB1!0.54!58.67!ZEB1;;chr6:31126291..31126399,+!p1@TCF19!0.54!29.38!TCF19;;chr5:176738887..176738934,-!p1@MXD3!0.54!20.63!MXD3;;chr3:114343826..114343869,-!p4@ZBTB20!0.54!5.72!ZBTB20;;chr3:168865250..168865272,-!p5@MECOM!0.54!2.50!MECOM;;chr7:27183325..27183338,-!p5@HOXA5!0.54!2.50!HOXA5;;chr19:13213555..13213568,-!p5@LYL1!0.54!2.50!LYL1;;chr12:96588279..96588299,+!p4@ELK3!0.53!14.11!ELK3;;chr1:23696308..23696339,-!p2@ZNF436!0.53!5.89!ZNF436;;chr1:158985493..158985535,+!p4@IFI16!0.53!4.02!IFI16;;chr3:71355163..71355209,-!p5@FOXP1!0.53!3.57!FOXP1;;chr3:25470062..25470084,+!p4@RARB!0.53!2.41!RARB;;chr4:57522598..57522664,-!p3@HOPX!0.53!2.41!HOPX;;chr17:46691732..46691766,-!p4@HOXB8!0.53!2.41!HOXB8;;chr10:94451574..94451587,+!p6@HHEX!0.53!2.41!HHEX;;chr4:87857433..87857472,+!p9@AFF1!0.52!4.73!AFF1;;chr20:42295745..42295765,+!p1@MYBL2!0.51!47.78!MYBL2;;chr12:96588219..96588263,+!p2@ELK3!0.51!20.63!ELK3;;chr9:116638565..116638606,+!p1@ZNF618!0.51!11.88!ZNF618;;chr1:205601000..205601055,-!p2@ELK4!0.51!11.61!ELK4;;chr10:35484804..35484902,+!p2@CREM!0.51!10.63!CREM;;chr15:90544532..90544563,+!p1@ZNF710!0.51!5.27!ZNF710;;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Line 38: Line 44:
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|name=Endothelial Cells - Umbilical vein, donor1
|name=Endothelial Cells - Umbilical vein, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
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|rna_catalog_number=SC8005
|rna_catalog_number=SC8005
Line 58: Line 80:
|rna_rin=
|rna_rin=
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=116E1
|rna_tube_id=1.16E+03
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|rna_weight_ug=10
|rnaseq_library_id=SRhi10008.TGACCA
|sample_age=fetal
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 82: Line 106:
|top_motifs=ALX1:1.85455524367;SOX{8,9,10}:1.73954667595;RXR{A,B,G}:1.67411449449;FOX{I1,J2}:1.5992973674;NFATC1..3:1.52967983405;IKZF2:1.4034332679;PAX6:1.20060342974;PITX1..3:1.19067471102;HBP1_HMGB_SSRP1_UBTF:1.17880811536;PAX1,9:1.12685299852;SOX2:1.07761011382;ELF1,2,4:1.06680238515;E2F1..5:1.05973670347;ADNP_IRX_SIX_ZHX:1.040444339;SOX5:1.00994386269;POU3F1..4:0.952543031076;YY1:0.945232766958;NFY{A,B,C}:0.893544975048;CDC5L:0.883760660827;TLX1..3_NFIC{dimer}:0.867858600981;FOXD3:0.830392202595;GATA6:0.814988821423;TFDP1:0.807580438163;ARID5B:0.798498151945;FOXP1:0.784263415754;STAT1,3:0.755980190673;LHX3,4:0.754809024511;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.752715855631;ZFP161:0.73379148006;GFI1:0.695033094948;MYB:0.680677204761;PBX1:0.669860915211;ZNF143:0.633901310593;PAX8:0.629287112103;EN1,2:0.621414464801;AR:0.613126062886;NRF1:0.602042000527;ETS1,2:0.597853113915;EVI1:0.584989156716;NKX2-2,8:0.550951379898;ONECUT1,2:0.544835064143;GATA4:0.488068328959;SPIB:0.475549096032;FOXA2:0.47213346413;SOX17:0.409393639571;HMGA1,2:0.408430572702;TEAD1:0.404038482301;GZF1:0.393273030974;POU1F1:0.386932955399;NR3C1:0.384788254649;IKZF1:0.383360885935;RBPJ:0.368911513872;NANOG:0.362495553575;TFAP2{A,C}:0.352134062564;TEF:0.337501173647;GFI1B:0.329820090455;LEF1_TCF7_TCF7L1,2:0.290423706726;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.285087528097;T:0.27446495533;HES1:0.211600375271;FOXN1:0.210684350194;TOPORS:0.186024165134;SPZ1:0.175838419304;TFAP4:0.157904039219;DMAP1_NCOR{1,2}_SMARC:0.156945616175;NKX2-3_NKX2-5:0.149895321394;bHLH_family:0.146862353929;HIC1:0.146584383546;XCPE1{core}:0.145603664379;HOX{A5,B5}:0.120623810531;PRDM1:0.109143617268;NFIX:0.0983881315285;AIRE:0.093933335468;TAL1_TCF{3,4,12}:0.0894633889765;HNF4A_NR2F1,2:0.0762050422354;MYOD1:0.0689072760521;ZBTB16:0.0622985283693;SPI1:0.0580201122005;NR5A1,2:0.0498431271298;MZF1:0.0399427452935;SP1:0.0394476690575;NFE2:0.0181051729366;MAZ:0.0161816787011;CUX2:0.0129829103576;SREBF1,2:0.00782708466785;ZIC1..3:0.00744712270887;GTF2I:-0.00439968107174;UFEwm:-0.00617101296307;BPTF:-0.00846707320694;EGR1..3:-0.0135732149023;TP53:-0.0157019039196;MTE{core}:-0.0164479511115;FOXO1,3,4:-0.0204668166609;STAT2,4,6:-0.0223221701864;BACH2:-0.0349983218611;PAX5:-0.0358388443727;CRX:-0.0528681208522;ALX4:-0.0557058995455;PAX4:-0.0563282144194;IRF1,2:-0.0567639609276;FOXQ1:-0.0626262957803;HOXA9_MEIS1:-0.0633188853551;MED-1{core}:-0.0719472533116;NANOG{mouse}:-0.0990087460299;FOS_FOS{B,L1}_JUN{B,D}:-0.113000462887;FOX{D1,D2}:-0.120082995164;GTF2A1,2:-0.122319539607;NHLH1,2:-0.124520194872;PDX1:-0.133538053924;BREu{core}:-0.136836366544;ZBTB6:-0.139800745212;STAT5{A,B}:-0.140811940812;NFE2L2:-0.142327567706;REST:-0.15535003904;ZNF238:-0.156766736206;SMAD1..7,9:-0.165503866711;GCM1,2:-0.167646224557;MEF2{A,B,C,D}:-0.168457634107;RORA:-0.192068500506;CREB1:-0.19613847169;MYBL2:-0.196489705432;FOXL1:-0.20438457678;HNF1A:-0.213069606484;IRF7:-0.219086377036;FOSL2:-0.22273157486;PAX3,7:-0.224237856978;KLF4:-0.224626014775;XBP1:-0.22883528779;PRRX1,2:-0.239194705863;ZNF384:-0.242968516179;TFAP2B:-0.245465537284;OCT4_SOX2{dimer}:-0.251611214852;HSF1,2:-0.259731269549;HAND1,2:-0.262744909998;SRF:-0.265822728364;EBF1:-0.273567090628;ATF6:-0.275418671207;TGIF1:-0.288503291;PATZ1:-0.294447496973;LMO2:-0.301453512501;ZNF423:-0.304581296682;CDX1,2,4:-0.304997399137;POU5F1:-0.352827773577;NR1H4:-0.355442066984;PPARG:-0.356351843664;FOXM1:-0.360178217019;PAX2:-0.361526845374;ELK1,4_GABP{A,B1}:-0.373065408605;NKX3-1:-0.392187642262;AHR_ARNT_ARNT2:-0.410994745712;RFX1:-0.436407784441;NFKB1_REL_RELA:-0.462910764424;FOX{F1,F2,J1}:-0.470106052668;POU6F1:-0.472820653345;ZNF148:-0.476484373542;NKX3-2:-0.509420963253;SNAI1..3:-0.520129730994;NFE2L1:-0.534842012104;DBP:-0.551175074172;ATF4:-0.568813419158;TLX2:-0.570436381031;ATF2:-0.615806197226;MYFfamily:-0.621294147541;FOXP3:-0.663804977899;RUNX1..3:-0.689658880505;MTF1:-0.689799309659;RFX2..5_RFXANK_RFXAP:-0.703606217311;EP300:-0.7078227411;GLI1..3:-0.723573143868;CEBPA,B_DDIT3:-0.723711367451;HLF:-0.732463461919;ESRRA:-0.735661786952;POU2F1..3:-0.748717008824;RREB1:-0.76409367791;TBP:-0.790250225606;ATF5_CREB3:-0.790875809849;TBX4,5:-0.801424303624;HOX{A6,A7,B6,B7}:-0.830055468411;NR6A1:-0.872245780097;VSX1,2:-0.927936116726;JUN:-0.930428992809;ZEB1:-1.01251315079;HOX{A4,D4}:-1.09615966071;RXRA_VDR{dimer}:-1.10061908381;NKX6-1,2:-1.10308898377;NKX2-1,4:-1.14182326075;NFIL3:-1.15236382946;HMX1:-1.15823051957;TFCP2:-1.18418636288;MAFB:-1.21545042161;HIF1A:-1.22828824053;ESR1:-1.418008171
|top_motifs=ALX1:1.85455524367;SOX{8,9,10}:1.73954667595;RXR{A,B,G}:1.67411449449;FOX{I1,J2}:1.5992973674;NFATC1..3:1.52967983405;IKZF2:1.4034332679;PAX6:1.20060342974;PITX1..3:1.19067471102;HBP1_HMGB_SSRP1_UBTF:1.17880811536;PAX1,9:1.12685299852;SOX2:1.07761011382;ELF1,2,4:1.06680238515;E2F1..5:1.05973670347;ADNP_IRX_SIX_ZHX:1.040444339;SOX5:1.00994386269;POU3F1..4:0.952543031076;YY1:0.945232766958;NFY{A,B,C}:0.893544975048;CDC5L:0.883760660827;TLX1..3_NFIC{dimer}:0.867858600981;FOXD3:0.830392202595;GATA6:0.814988821423;TFDP1:0.807580438163;ARID5B:0.798498151945;FOXP1:0.784263415754;STAT1,3:0.755980190673;LHX3,4:0.754809024511;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.752715855631;ZFP161:0.73379148006;GFI1:0.695033094948;MYB:0.680677204761;PBX1:0.669860915211;ZNF143:0.633901310593;PAX8:0.629287112103;EN1,2:0.621414464801;AR:0.613126062886;NRF1:0.602042000527;ETS1,2:0.597853113915;EVI1:0.584989156716;NKX2-2,8:0.550951379898;ONECUT1,2:0.544835064143;GATA4:0.488068328959;SPIB:0.475549096032;FOXA2:0.47213346413;SOX17:0.409393639571;HMGA1,2:0.408430572702;TEAD1:0.404038482301;GZF1:0.393273030974;POU1F1:0.386932955399;NR3C1:0.384788254649;IKZF1:0.383360885935;RBPJ:0.368911513872;NANOG:0.362495553575;TFAP2{A,C}:0.352134062564;TEF:0.337501173647;GFI1B:0.329820090455;LEF1_TCF7_TCF7L1,2:0.290423706726;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.285087528097;T:0.27446495533;HES1:0.211600375271;FOXN1:0.210684350194;TOPORS:0.186024165134;SPZ1:0.175838419304;TFAP4:0.157904039219;DMAP1_NCOR{1,2}_SMARC:0.156945616175;NKX2-3_NKX2-5:0.149895321394;bHLH_family:0.146862353929;HIC1:0.146584383546;XCPE1{core}:0.145603664379;HOX{A5,B5}:0.120623810531;PRDM1:0.109143617268;NFIX:0.0983881315285;AIRE:0.093933335468;TAL1_TCF{3,4,12}:0.0894633889765;HNF4A_NR2F1,2:0.0762050422354;MYOD1:0.0689072760521;ZBTB16:0.0622985283693;SPI1:0.0580201122005;NR5A1,2:0.0498431271298;MZF1:0.0399427452935;SP1:0.0394476690575;NFE2:0.0181051729366;MAZ:0.0161816787011;CUX2:0.0129829103576;SREBF1,2:0.00782708466785;ZIC1..3:0.00744712270887;GTF2I:-0.00439968107174;UFEwm:-0.00617101296307;BPTF:-0.00846707320694;EGR1..3:-0.0135732149023;TP53:-0.0157019039196;MTE{core}:-0.0164479511115;FOXO1,3,4:-0.0204668166609;STAT2,4,6:-0.0223221701864;BACH2:-0.0349983218611;PAX5:-0.0358388443727;CRX:-0.0528681208522;ALX4:-0.0557058995455;PAX4:-0.0563282144194;IRF1,2:-0.0567639609276;FOXQ1:-0.0626262957803;HOXA9_MEIS1:-0.0633188853551;MED-1{core}:-0.0719472533116;NANOG{mouse}:-0.0990087460299;FOS_FOS{B,L1}_JUN{B,D}:-0.113000462887;FOX{D1,D2}:-0.120082995164;GTF2A1,2:-0.122319539607;NHLH1,2:-0.124520194872;PDX1:-0.133538053924;BREu{core}:-0.136836366544;ZBTB6:-0.139800745212;STAT5{A,B}:-0.140811940812;NFE2L2:-0.142327567706;REST:-0.15535003904;ZNF238:-0.156766736206;SMAD1..7,9:-0.165503866711;GCM1,2:-0.167646224557;MEF2{A,B,C,D}:-0.168457634107;RORA:-0.192068500506;CREB1:-0.19613847169;MYBL2:-0.196489705432;FOXL1:-0.20438457678;HNF1A:-0.213069606484;IRF7:-0.219086377036;FOSL2:-0.22273157486;PAX3,7:-0.224237856978;KLF4:-0.224626014775;XBP1:-0.22883528779;PRRX1,2:-0.239194705863;ZNF384:-0.242968516179;TFAP2B:-0.245465537284;OCT4_SOX2{dimer}:-0.251611214852;HSF1,2:-0.259731269549;HAND1,2:-0.262744909998;SRF:-0.265822728364;EBF1:-0.273567090628;ATF6:-0.275418671207;TGIF1:-0.288503291;PATZ1:-0.294447496973;LMO2:-0.301453512501;ZNF423:-0.304581296682;CDX1,2,4:-0.304997399137;POU5F1:-0.352827773577;NR1H4:-0.355442066984;PPARG:-0.356351843664;FOXM1:-0.360178217019;PAX2:-0.361526845374;ELK1,4_GABP{A,B1}:-0.373065408605;NKX3-1:-0.392187642262;AHR_ARNT_ARNT2:-0.410994745712;RFX1:-0.436407784441;NFKB1_REL_RELA:-0.462910764424;FOX{F1,F2,J1}:-0.470106052668;POU6F1:-0.472820653345;ZNF148:-0.476484373542;NKX3-2:-0.509420963253;SNAI1..3:-0.520129730994;NFE2L1:-0.534842012104;DBP:-0.551175074172;ATF4:-0.568813419158;TLX2:-0.570436381031;ATF2:-0.615806197226;MYFfamily:-0.621294147541;FOXP3:-0.663804977899;RUNX1..3:-0.689658880505;MTF1:-0.689799309659;RFX2..5_RFXANK_RFXAP:-0.703606217311;EP300:-0.7078227411;GLI1..3:-0.723573143868;CEBPA,B_DDIT3:-0.723711367451;HLF:-0.732463461919;ESRRA:-0.735661786952;POU2F1..3:-0.748717008824;RREB1:-0.76409367791;TBP:-0.790250225606;ATF5_CREB3:-0.790875809849;TBX4,5:-0.801424303624;HOX{A6,A7,B6,B7}:-0.830055468411;NR6A1:-0.872245780097;VSX1,2:-0.927936116726;JUN:-0.930428992809;ZEB1:-1.01251315079;HOX{A4,D4}:-1.09615966071;RXRA_VDR{dimer}:-1.10061908381;NKX6-1,2:-1.10308898377;NKX2-1,4:-1.14182326075;NFIL3:-1.15236382946;HMX1:-1.15823051957;TFCP2:-1.18418636288;MAFB:-1.21545042161;HIF1A:-1.22828824053;ESR1:-1.418008171
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11243-116E1;search_select_hide=table117:FF:11243-116E1
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Endothelial Cells - Umbilical vein, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10872
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical vein
dev stagefetus
sexunknown
agefetal
cell typeblood vessel endothelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number4242
catalog numberSC8005
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004928
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10872 CAGE DRX008231 DRR009103
Accession ID Hg19

Library idBAMCTSS
CNhs10872 DRZ000528 DRZ001913
Accession ID Hg38

Library idBAMCTSS
CNhs10872 DRZ011878 DRZ013263
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004928
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.TGACCA sRNA-Seq DRX037110 DRR041476
Accession ID Hg19

Library idBAMCTSS
SRhi10008.TGACCA DRZ007118


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.116
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.55
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.01
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.459
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0371
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0142
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.172
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.153
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.141
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.265
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0234
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.408
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0714
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.16
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.256
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0371
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10872

Jaspar motifP-value
MA0002.21.41488e-5
MA0003.10.199
MA0004.10.613
MA0006.10.456
MA0007.10.917
MA0009.10.947
MA0014.10.666
MA0017.10.168
MA0018.20.00387
MA0019.10.835
MA0024.11.24691e-6
MA0025.10.0414
MA0027.10.866
MA0028.10.156
MA0029.10.846
MA0030.10.386
MA0031.10.705
MA0035.20.228
MA0038.10.0373
MA0039.20.526
MA0040.10.763
MA0041.10.704
MA0042.10.907
MA0043.12.04868e-4
MA0046.10.467
MA0047.20.927
MA0048.10.0234
MA0050.10.489
MA0051.10.0928
MA0052.10.0924
MA0055.10.0243
MA0057.10.605
MA0058.10.896
MA0059.10.55
MA0060.11.52183e-5
MA0061.16.74532e-5
MA0062.20.708
MA0065.20.0794
MA0066.10.24
MA0067.10.204
MA0068.10.0373
MA0069.10.0708
MA0070.10.58
MA0071.10.997
MA0072.10.792
MA0073.10.532
MA0074.10.556
MA0076.10.753
MA0077.13.11727e-4
MA0078.10.197
MA0079.20.866
MA0080.20.0718
MA0081.10.237
MA0083.10.0428
MA0084.10.0208
MA0087.10.0216
MA0088.10.0462
MA0090.10.463
MA0091.10.27
MA0092.10.453
MA0093.10.671
MA0099.20.279
MA0100.10.282
MA0101.10.0691
MA0102.29.81356e-4
MA0103.10.00242
MA0104.20.504
MA0105.19.66229e-4
MA0106.10.0731
MA0107.10.0152
MA0108.20.00178
MA0111.10.368
MA0112.22.05412e-5
MA0113.10.401
MA0114.10.0498
MA0115.10.336
MA0116.10.0233
MA0117.10.546
MA0119.10.268
MA0122.10.356
MA0124.10.171
MA0125.10.795
MA0131.10.0902
MA0135.10.0517
MA0136.10.0544
MA0137.20.778
MA0138.20.259
MA0139.10.579
MA0140.10.266
MA0141.10.445
MA0142.10.318
MA0143.10.833
MA0144.10.894
MA0145.10.171
MA0146.10.0871
MA0147.10.603
MA0148.10.387
MA0149.10.0226
MA0150.10.107
MA0152.10.68
MA0153.10.216
MA0154.10.00666
MA0155.10.745
MA0156.10.0152
MA0157.10.926
MA0159.10.07
MA0160.10.134
MA0162.10.801
MA0163.10.0797
MA0164.10.771
MA0258.10.00229
MA0259.10.592



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10872

Novel motifP-value
10.814
100.986
1000.433
1010.925
1020.565
1030.194
1040.807
1050.771
1060.00781
1070.67
1080.453
1090.273
110.506
1100.384
1110.72
1120.183
1130.253
1140.35
1150.305
1160.415
1170.745
1180.951
1190.507
120.508
1200.261
1210.287
1220.221
1230.706
1240.109
1250.575
1260.311
1270.0662
1280.129
1290.824
130.465
1300.474
1310.245
1320.349
1330.478
1340.935
1350.548
1360.0782
1370.204
1380.804
1390.0183
140.526
1400.184
1410.317
1420.0055
1430.0533
1440.703
1450.948
1460.993
1470.778
1480.0455
1490.517
150.204
1500.824
1510.282
1520.35
1530.116
1540.711
1550.183
1560.207
1570.0604
1580.0378
1590.0931
160.281
1600.836
1610.131
1620.931
1630.884
1640.273
1650.523
1660.812
1670.426
1680.71
1690.201
170.201
180.00828
190.474
20.29
200.209
210.476
220.179
230.0155
240.954
250.517
260.181
270.203
280.73
290.79
30.58
300.274
310.156
320.00765
330.728
340.901
350.162
360.238
370.447
380.733
390.541
40.11
400.745
410.839
420.884
430.0813
440.296
450.319
460.102
470.94
480.682
490.104
50.354
500.994
510.296
520.181
530.48
540.253
550.922
560.527
570.701
580.0746
590.167
60.641
600.0378
610.911
620.0803
630.627
640.306
650.0719
660.218
670.966
680.631
690.633
70.928
709.6009e-5
710.268
720.981
730.848
740.645
750.706
760.768
770.116
780.968
790.33
80.905
800.608
810.102
820.139
830.678
840.729
850.00785
860.508
870.63
880.479
890.0322
90.398
900.58
910.495
920.322
930.58
940.0996
950.703
960.366
970.584
980.129
990.176



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10872


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
0002618 (endothelial cell of umbilical vein)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
0000247 (human endothelial cell of umbilical vein sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

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