FF:11252-116F1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON: | |DRA_sample_Accession=CAGE@SAMD00005285 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005285 | ||
|accession_numbers=CAGE;DRX008381;DRR009253;DRZ000678;DRZ002063;DRZ012028;DRZ013413 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037216;DRR041582;DRZ007224 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0010317,UBERON:0007844,UBERON:0002242,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002564 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000123 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr14:61116183..61116208,-!p1@SIX1!2.06!408.19!SIX1;;chr14:37131058..37131139,+!p1@PAX9!1.76!57.17!PAX9;;chr14:37126765..37126799,+!p2@PAX9!1.72!51.41!PAX9;;chr6:85474299..85474324,-!p1@TBX18!1.71!88.71!TBX18;;chr20:21686317..21686350,+!p1@PAX1!1.69!47.85!PAX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.67!45.64!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.66!120.11!TWIST1;;chr3:25470156..25470227,+!p2@RARB!1.57!35.83!RARB;;chr20:21686290..21686311,+!p2@PAX1!1.55!34.35!PAX1;;chr12:54393880..54393962,+!p1@HOXC9!1.54!33.86!HOXC9;;chr12:54378923..54378966,+!p1@HOXC10!1.53!33.00!HOXC10;;chr16:86544113..86544145,+!p1@FOXF1!1.52!39.75!FOXF1;;chr7:15726296..15726315,-!p1@MEOX2!1.52!32.02!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!1.50!30.80!HOXA3;;chr9:132427883..132427951,+!p2@PRRX2!1.49!29.94!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.44!34.72!PRRX2;;chr6:1389789..1389821,+!p1@FOXF2!1.42!34.84!FOXF2;;chr17:46682321..46682362,-!p1@HOXB6!1.41!24.78!HOXB6;;chr5:158526917..158526932,-!p1@EBF1!1.37!54.60!EBF1;;chr6:1610293..1610310,+!p1@FOXC1!1.37!37.30!FOXC1;;chr1:170633348..170633399,+!p2@PRRX1!1.37!30.67!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.54!PRRX1;;chr7:27196217..27196246,-!p2@HOXA7!1.34!20.73!HOXA7;;chr15:57511609..57511651,+!p2@TCF12!1.33!33.62!TCF12;;chr3:147127142..147127168,+!p1@ZIC1!1.31!19.63!ZIC1;;chr16:86600426..86600441,+!p1@FOXC2!1.29!45.15!FOXC2;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.30!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!1.26!17.18!HOXC8;;chr14:61116168..61116180,-!p2@SIX1!1.25!19.39!SIX1;;chr19:45971246..45971265,+!p1@FOSB!1.23!288.57!FOSB;;chr7:15726243..15726293,-!p2@MEOX2!1.22!15.46!MEOX2;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.21!NFIX;;chr11:113930425..113930471,+!p1@ZBTB16!1.21!21.84!ZBTB16;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.21!16.07!GLIS1;;chr12:54379029..54379057,+!p2@HOXC10!1.20!14.97!HOXC10;;chr3:25469815..25469866,+!p3@RARB!1.19!14.48!RARB;;chr3:25469724..25469773,+!p1@RARB!1.18!20.61!RARB;;chr9:96717629..96717644,-!p1@BARX1!1.15!13.25!BARX1;;chr7:19157043..19157088,-!p2@TWIST1!1.13!31.53!TWIST1;;chr14:75745523..75745537,+!p1@FOS!1.12!1436.10!FOS;;chr8:48650715..48650735,-!p1@CEBPD!1.11!1509.35!CEBPD;;chr5:137801160..137801176,+!p1@EGR1!1.11!1186.55!EGR1;;chr5:137804484..137804498,+!p2@EGR1!1.11!47.73!EGR1;;chr1:158969752..158969780,+!p6@IFI16!1.11!20.86!IFI16;;chr8:116673894..116673913,-!p12@TRPS1!1.11!12.02!TRPS1;;chr12:54422217..54422239,+!p3@HOXC6!1.10!11.53!HOXC6;;chr14:61191018..61191048,-!p1@SIX4!1.09!24.91!SIX4;;chr14:37126814..37126834,+!p4@PAX9!1.09!11.41!PAX9;;chr1:59249688..59249703,-!p3@JUN!1.07!65.15!JUN;;chr8:77593474..77593612,+!p1@ZFHX4!1.07!46.13!ZFHX4;;chr1:170632959..170632987,+!p4@PRRX1!1.06!11.53!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!1.06!10.55!HOXA10;;chr8:99956662..99956684,+!p1@OSR2!1.05!15.83!OSR2;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.18!KDM5D;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.05!10.18!HOXC5;;chr2:214015111..214015179,-!p1@IKZF2!1.03!17.67!IKZF2;;chr2:85981107..85981120,+!p3@ATOH8!1.03!9.82!ATOH8;;chr3:147127177..147127194,+!p2@ZIC1!1.03!9.69!ZIC1;;chr7:27205106..27205134,-!p2@HOXA9!1.01!9.32!HOXA9;;chr8:49833948..49833973,-!p2@SNAI2!0.99!57.67!SNAI2;;chr21:47063625..47063658,+!p1@PCBP3!0.98!38.16!PCBP3;;chr22:19748231..19748317,+!p1@TBX1!0.98!8.59!TBX1;;chr17:46675558..46675577,-!p2@HOXB6!0.98!8.59!HOXB6;;chr1:59249707..59249727,-!p1@JUN!0.97!357.28!JUN;;chr12:54402790..54402805,+!p2@HOXC8!0.96!8.22!HOXC8;;chr7:15725757..15725828,-!p5@MEOX2!0.96!8.10!MEOX2;;chr12:115121962..115121987,-!p1@TBX3!0.95!68.09!TBX3;;chr17:46688334..46688385,-!p1@HOXB7!0.95!11.66!HOXB7;;chr19:45260775..45260838,+!p5@BCL3!0.95!10.31!BCL3;;chr4:13546632..13546662,-!p1@NKX3-2!0.95!7.85!NKX3-2;;chr11:46299539..46299620,+!p2@CREB3L1!0.94!13.25!CREB3L1;;chr9:73029219..73029289,-!p2@KLF9!0.93!23.68!KLF9;;chr10:28034739..28034756,-!p1@MKX!0.93!7.61!MKX;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.61!PRRX1;;chr2:214014959..214015006,-!p4@IKZF2!0.93!7.48!IKZF2;;chr5:92918919..92918942,+!p1@NR2F1!0.92!34.23!NR2F1;;chr2:45236540..45236577,-!p1@SIX2!0.92!7.36!SIX2;;chr3:147111231..147111281,+!p3@ZIC1!0.91!7.12!ZIC1;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.79!CREB3L1;;chr12:54402729..54402743,+!p3@HOXC8!0.90!6.87!HOXC8;;chr12:54422245..54422263,+!p7@HOXC6!0.89!6.75!HOXC6;;chr14:24837368..24837401,+!p1@NFATC4!0.87!15.70!NFATC4;;chr7:113726357..113726443,+!p1@FOXP2!0.86!11.04!FOXP2;;chr1:170633262..170633285,+!p3@PRRX1!0.86!7.24!PRRX1;;chr6:85474198..85474212,-!p3@TBX18!0.86!6.26!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.85!145.27!AEBP1;;chr8:49833978..49833996,-!p1@SNAI2!0.85!134.47!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.37!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.05!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.13!ZFY;;chr3:71179699..71179744,-!p2@FOXP1!0.84!47.73!FOXP1;;chr3:12329397..12329433,+!p2@PPARG!0.84!13.99!PPARG;;chr1:158969727..158969749,+!p11@IFI16!0.84!5.89!IFI16;;chr11:113930401..113930422,+!p3@ZBTB16!0.84!5.89!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!0.83!6.75!PPARG;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.77!TCF21;;chr16:79634624..79634642,-!p1@MAF!0.81!23.19!MAF;;chr2:85981222..85981259,+!p2@ATOH8!0.81!9.45!ATOH8;;chr6:45296048..45296082,+!p1@RUNX2!0.81!6.38!RUNX2;;chr15:57511589..57511608,+!p4@TCF12!0.81!5.52!TCF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.81!5.40!PKNOX2;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.43!NFE2L2;;chr7:27183291..27183324,-!p1@HOXA5!0.80!5.28!HOXA5;;chr13:45010939..45011033,-!p1@TSC22D1!0.79!374.21!TSC22D1;;chr5:72744594..72744609,-!p1@FOXD1!0.79!25.52!FOXD1;;chr9:16870659..16870675,-!p2@BNC2!0.79!6.50!BNC2;;chr9:77112244..77112262,+!p1@RORB!0.79!5.89!RORB;;chr8:77593448..77593471,+!p2@ZFHX4!0.79!5.15!ZFHX4;;chr3:25470062..25470084,+!p4@RARB!0.79!5.15!RARB;;chr5:92918894..92918912,+!p2@NR2F1!0.78!17.67!NR2F1;;chr9:73028814..73028895,-!p1@KLF9!0.77!52.51!KLF9;;chr12:115122318..115122331,-!p2@TBX3!0.77!4.91!TBX3;;chr14:61190754..61190776,-!p6@SIX4!0.77!4.91!SIX4;;chr6:19837592..19837621,+!p1@ID4!0.76!32.15!ID4;;chr7:27196267..27196311,-!p1@HOXA7!0.76!4.78!HOXA7;;chr16:86600870..86600921,+!p2@FOXC2!0.76!4.78!FOXC2;;chr3:187463220..187463232,-!p3@BCL6!0.75!14.97!BCL6;;chr19:49864746..49864780,-!p2@TEAD2!0.75!6.63!TEAD2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.13!FOS;;chr20:48599506..48599526,+!p1@SNAI1!0.74!31.65!SNAI1;;chr16:73093174..73093209,-!p3@ZFHX3!0.74!6.38!ZFHX3;;chr1:59249732..59249749,-!p2@JUN!0.73!58.77!JUN;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.39!KLF5;;chr5:124082322..124082364,-!p1@ZNF608!0.73!12.27!ZNF608;;chr14:61191049..61191080,-!p2@SIX4!0.73!7.97!SIX4;;chr1:47903709..47903764,+!p1@BC169308!0.73!5.03!FOXD2;;chr9:16870710..16870763,-!p1@BNC2!0.72!7.85!BNC2;;chr5:158526459..158526481,-!p2@EBF1!0.72!5.89!EBF1;;chr12:115122005..115122016,-!p3@TBX3!0.72!5.15!TBX3;;chr11:47279248..47279264,+!p3@NR1H3!0.72!4.91!NR1H3;;chr2:5832508..5832524,+!p1@SOX11!0.72!4.29!SOX11;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.29!KCNIP3;;chr21:38071430..38071456,+!p1@SIM2!0.72!4.29!SIM2;;chr3:187463248..187463264,-!p1@BCL6!0.71!101.10!BCL6;;chr3:187463179..187463201,-!p2@BCL6!0.71!18.89!BCL6;;chr16:79633894..79633954,-!p3@MAF!0.71!8.47!MAF;;chr11:113930291..113930339,+!p2@ZBTB16!0.71!7.12!ZBTB16;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.17!CREB3L1;;chr12:54422268..54422278,+!p8@HOXC6!0.71!4.17!HOXC6;;chr7:27196196..27196210,-!p5@HOXA7!0.71!4.17!HOXA7;;chr3:71179746..71179783,-!p7@FOXP1!0.70!15.09!FOXP1;;chr2:19558373..19558392,-!p1@OSR1!0.70!12.15!OSR1;;chr14:21994337..21994442,-!p1@SALL2!0.69!11.78!SALL2;;chr13:37494365..37494381,-!p1@SMAD9!0.69!7.24!SMAD9;;chr8:57123815..57123867,-!p1@PLAG1!0.68!17.30!PLAG1;;chr2:113993052..113993097,-!p2@PAX8!0.68!9.45!PAX8;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.99!TWIST2;;chr5:92918956..92918969,+!p4@NR2F1!0.68!4.17!NR2F1;;chr6:1389989..1390019,+!p2@FOXF2!0.68!3.80!FOXF2;;chr2:176994408..176994492,+!p1@HOXD8!0.68!3.80!HOXD8;;chr12:54410948..54410992,+!p3@HOXC5!0.68!3.80!HOXC5;;chr19:13106214..13106382,+!p1@NFIX!0.67!99.13!NFIX;;chr12:57504975..57505019,-!p2@STAT6!0.67!16.93!STAT6;;chr10:8096631..8096660,+!p1@GATA3!0.67!4.54!GATA3;;chr3:169381420..169381535,-!p1@MECOM!0.67!4.42!MECOM;;chr5:137804130..137804156,+!p5@EGR1!0.67!3.93!EGR1;;chr17:46690839..46690884,-!p1@HOXB8!0.67!3.68!HOXB8;;chr11:125034605..125034636,+!p2@PKNOX2!0.67!3.68!PKNOX2;;chr12:66218598..66218645,+!p2@HMGA2!0.66!18.77!HMGA2;;chr18:22932080..22932170,-!p1@ZNF521!0.66!17.18!ZNF521;;chr15:42749722..42749739,-!p2@ZFP106!0.66!6.99!ZFP106;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.66!6.50!MEIS3P1;;chr10:131762504..131762555,-!p1@EBF3!0.66!3.56!EBF3;;chr10:63809013..63809041,+!p3@ARID5B!0.65!22.33!ARID5B;;chr12:54694758..54694805,-!p1@NFE2!0.65!4.29!NFE2;;chr18:53068911..53068935,-!p4@TCF4!0.65!4.05!TCF4;;chr5:158527104..158527135,-!p4@EBF1!0.65!3.44!EBF1;;chr7:15726220..15726236,-!p4@MEOX2!0.65!3.44!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!0.65!3.44!HIF3A;;chr17:59477233..59477263,+!p1@TBX2!0.64!11.90!TBX2;;chr3:12329358..12329393,+!p3@PPARG!0.64!9.20!PPARG;;chr20:30193083..30193098,+!p1@ID1!0.63!313.84!ID1;;chr17:70117153..70117174,+!p1@SOX9!0.63!39.38!SOX9;;chr8:116681409..116681431,-!p2@TRPS1!0.63!10.06!TRPS1;;chr7:27183263..27183284,-!p2@HOXA5!0.63!3.31!HOXA5;;chr15:67391010..67391046,+!p13@SMAD3!0.63!3.31!SMAD3;;chr11:125034586..125034604,+!p3@PKNOX2!0.63!3.31!PKNOX2;;chr1:61547894..61547968,+!p2@NFIA!0.62!10.67!NFIA;;chr3:147111198..147111225,+!p4@ZIC1!0.62!3.19!ZIC1;;chr10:63661437..63661465,+!p2@ARID5B!0.61!71.28!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.61!50.30!ARID5B;;chr10:63853436..63853442,+!p4@ARID5B!0.61!19.63!ARID5B;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.61!17.18!GLIS2;;chr19:13134457..13134462,+!p5@NFIX!0.61!6.01!NFIX;;chr7:137564372..137564394,-!p7@CREB3L2!0.61!5.52!CREB3L2;;chr5:92919100..92919135,+!p3@NR2F1!0.61!3.93!NR2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| |expression_enrichment_score=chr14:61116183..61116208,-!p1@SIX1!2.06!408.19!SIX1;;chr14:37131058..37131139,+!p1@PAX9!1.76!57.17!PAX9;;chr14:37126765..37126799,+!p2@PAX9!1.72!51.41!PAX9;;chr6:85474299..85474324,-!p1@TBX18!1.71!88.71!TBX18;;chr20:21686317..21686350,+!p1@PAX1!1.69!47.85!PAX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.67!45.64!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.66!120.11!TWIST1;;chr3:25470156..25470227,+!p2@RARB!1.57!35.83!RARB;;chr20:21686290..21686311,+!p2@PAX1!1.55!34.35!PAX1;;chr12:54393880..54393962,+!p1@HOXC9!1.54!33.86!HOXC9;;chr12:54378923..54378966,+!p1@HOXC10!1.53!33.00!HOXC10;;chr16:86544113..86544145,+!p1@FOXF1!1.52!39.75!FOXF1;;chr7:15726296..15726315,-!p1@MEOX2!1.52!32.02!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!1.50!30.80!HOXA3;;chr9:132427883..132427951,+!p2@PRRX2!1.49!29.94!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.44!34.72!PRRX2;;chr6:1389789..1389821,+!p1@FOXF2!1.42!34.84!FOXF2;;chr17:46682321..46682362,-!p1@HOXB6!1.41!24.78!HOXB6;;chr5:158526917..158526932,-!p1@EBF1!1.37!54.60!EBF1;;chr6:1610293..1610310,+!p1@FOXC1!1.37!37.30!FOXC1;;chr1:170633348..170633399,+!p2@PRRX1!1.37!30.67!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.54!PRRX1;;chr7:27196217..27196246,-!p2@HOXA7!1.34!20.73!HOXA7;;chr15:57511609..57511651,+!p2@TCF12!1.33!33.62!TCF12;;chr3:147127142..147127168,+!p1@ZIC1!1.31!19.63!ZIC1;;chr16:86600426..86600441,+!p1@FOXC2!1.29!45.15!FOXC2;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.30!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!1.26!17.18!HOXC8;;chr14:61116168..61116180,-!p2@SIX1!1.25!19.39!SIX1;;chr19:45971246..45971265,+!p1@FOSB!1.23!288.57!FOSB;;chr7:15726243..15726293,-!p2@MEOX2!1.22!15.46!MEOX2;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.21!NFIX;;chr11:113930425..113930471,+!p1@ZBTB16!1.21!21.84!ZBTB16;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.21!16.07!GLIS1;;chr12:54379029..54379057,+!p2@HOXC10!1.20!14.97!HOXC10;;chr3:25469815..25469866,+!p3@RARB!1.19!14.48!RARB;;chr3:25469724..25469773,+!p1@RARB!1.18!20.61!RARB;;chr9:96717629..96717644,-!p1@BARX1!1.15!13.25!BARX1;;chr7:19157043..19157088,-!p2@TWIST1!1.13!31.53!TWIST1;;chr14:75745523..75745537,+!p1@FOS!1.12!1436.10!FOS;;chr8:48650715..48650735,-!p1@CEBPD!1.11!1509.35!CEBPD;;chr5:137801160..137801176,+!p1@EGR1!1.11!1186.55!EGR1;;chr5:137804484..137804498,+!p2@EGR1!1.11!47.73!EGR1;;chr1:158969752..158969780,+!p6@IFI16!1.11!20.86!IFI16;;chr8:116673894..116673913,-!p12@TRPS1!1.11!12.02!TRPS1;;chr12:54422217..54422239,+!p3@HOXC6!1.10!11.53!HOXC6;;chr14:61191018..61191048,-!p1@SIX4!1.09!24.91!SIX4;;chr14:37126814..37126834,+!p4@PAX9!1.09!11.41!PAX9;;chr1:59249688..59249703,-!p3@JUN!1.07!65.15!JUN;;chr8:77593474..77593612,+!p1@ZFHX4!1.07!46.13!ZFHX4;;chr1:170632959..170632987,+!p4@PRRX1!1.06!11.53!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!1.06!10.55!HOXA10;;chr8:99956662..99956684,+!p1@OSR2!1.05!15.83!OSR2;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.18!KDM5D;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.05!10.18!HOXC5;;chr2:214015111..214015179,-!p1@IKZF2!1.03!17.67!IKZF2;;chr2:85981107..85981120,+!p3@ATOH8!1.03!9.82!ATOH8;;chr3:147127177..147127194,+!p2@ZIC1!1.03!9.69!ZIC1;;chr7:27205106..27205134,-!p2@HOXA9!1.01!9.32!HOXA9;;chr8:49833948..49833973,-!p2@SNAI2!0.99!57.67!SNAI2;;chr21:47063625..47063658,+!p1@PCBP3!0.98!38.16!PCBP3;;chr22:19748231..19748317,+!p1@TBX1!0.98!8.59!TBX1;;chr17:46675558..46675577,-!p2@HOXB6!0.98!8.59!HOXB6;;chr1:59249707..59249727,-!p1@JUN!0.97!357.28!JUN;;chr12:54402790..54402805,+!p2@HOXC8!0.96!8.22!HOXC8;;chr7:15725757..15725828,-!p5@MEOX2!0.96!8.10!MEOX2;;chr12:115121962..115121987,-!p1@TBX3!0.95!68.09!TBX3;;chr17:46688334..46688385,-!p1@HOXB7!0.95!11.66!HOXB7;;chr19:45260775..45260838,+!p5@BCL3!0.95!10.31!BCL3;;chr4:13546632..13546662,-!p1@NKX3-2!0.95!7.85!NKX3-2;;chr11:46299539..46299620,+!p2@CREB3L1!0.94!13.25!CREB3L1;;chr9:73029219..73029289,-!p2@KLF9!0.93!23.68!KLF9;;chr10:28034739..28034756,-!p1@MKX!0.93!7.61!MKX;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.61!PRRX1;;chr2:214014959..214015006,-!p4@IKZF2!0.93!7.48!IKZF2;;chr5:92918919..92918942,+!p1@NR2F1!0.92!34.23!NR2F1;;chr2:45236540..45236577,-!p1@SIX2!0.92!7.36!SIX2;;chr3:147111231..147111281,+!p3@ZIC1!0.91!7.12!ZIC1;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.79!CREB3L1;;chr12:54402729..54402743,+!p3@HOXC8!0.90!6.87!HOXC8;;chr12:54422245..54422263,+!p7@HOXC6!0.89!6.75!HOXC6;;chr14:24837368..24837401,+!p1@NFATC4!0.87!15.70!NFATC4;;chr7:113726357..113726443,+!p1@FOXP2!0.86!11.04!FOXP2;;chr1:170633262..170633285,+!p3@PRRX1!0.86!7.24!PRRX1;;chr6:85474198..85474212,-!p3@TBX18!0.86!6.26!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.85!145.27!AEBP1;;chr8:49833978..49833996,-!p1@SNAI2!0.85!134.47!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.37!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.05!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.13!ZFY;;chr3:71179699..71179744,-!p2@FOXP1!0.84!47.73!FOXP1;;chr3:12329397..12329433,+!p2@PPARG!0.84!13.99!PPARG;;chr1:158969727..158969749,+!p11@IFI16!0.84!5.89!IFI16;;chr11:113930401..113930422,+!p3@ZBTB16!0.84!5.89!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!0.83!6.75!PPARG;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.77!TCF21;;chr16:79634624..79634642,-!p1@MAF!0.81!23.19!MAF;;chr2:85981222..85981259,+!p2@ATOH8!0.81!9.45!ATOH8;;chr6:45296048..45296082,+!p1@RUNX2!0.81!6.38!RUNX2;;chr15:57511589..57511608,+!p4@TCF12!0.81!5.52!TCF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.81!5.40!PKNOX2;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.43!NFE2L2;;chr7:27183291..27183324,-!p1@HOXA5!0.80!5.28!HOXA5;;chr13:45010939..45011033,-!p1@TSC22D1!0.79!374.21!TSC22D1;;chr5:72744594..72744609,-!p1@FOXD1!0.79!25.52!FOXD1;;chr9:16870659..16870675,-!p2@BNC2!0.79!6.50!BNC2;;chr9:77112244..77112262,+!p1@RORB!0.79!5.89!RORB;;chr8:77593448..77593471,+!p2@ZFHX4!0.79!5.15!ZFHX4;;chr3:25470062..25470084,+!p4@RARB!0.79!5.15!RARB;;chr5:92918894..92918912,+!p2@NR2F1!0.78!17.67!NR2F1;;chr9:73028814..73028895,-!p1@KLF9!0.77!52.51!KLF9;;chr12:115122318..115122331,-!p2@TBX3!0.77!4.91!TBX3;;chr14:61190754..61190776,-!p6@SIX4!0.77!4.91!SIX4;;chr6:19837592..19837621,+!p1@ID4!0.76!32.15!ID4;;chr7:27196267..27196311,-!p1@HOXA7!0.76!4.78!HOXA7;;chr16:86600870..86600921,+!p2@FOXC2!0.76!4.78!FOXC2;;chr3:187463220..187463232,-!p3@BCL6!0.75!14.97!BCL6;;chr19:49864746..49864780,-!p2@TEAD2!0.75!6.63!TEAD2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.13!FOS;;chr20:48599506..48599526,+!p1@SNAI1!0.74!31.65!SNAI1;;chr16:73093174..73093209,-!p3@ZFHX3!0.74!6.38!ZFHX3;;chr1:59249732..59249749,-!p2@JUN!0.73!58.77!JUN;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.39!KLF5;;chr5:124082322..124082364,-!p1@ZNF608!0.73!12.27!ZNF608;;chr14:61191049..61191080,-!p2@SIX4!0.73!7.97!SIX4;;chr1:47903709..47903764,+!p1@BC169308!0.73!5.03!FOXD2;;chr9:16870710..16870763,-!p1@BNC2!0.72!7.85!BNC2;;chr5:158526459..158526481,-!p2@EBF1!0.72!5.89!EBF1;;chr12:115122005..115122016,-!p3@TBX3!0.72!5.15!TBX3;;chr11:47279248..47279264,+!p3@NR1H3!0.72!4.91!NR1H3;;chr2:5832508..5832524,+!p1@SOX11!0.72!4.29!SOX11;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.29!KCNIP3;;chr21:38071430..38071456,+!p1@SIM2!0.72!4.29!SIM2;;chr3:187463248..187463264,-!p1@BCL6!0.71!101.10!BCL6;;chr3:187463179..187463201,-!p2@BCL6!0.71!18.89!BCL6;;chr16:79633894..79633954,-!p3@MAF!0.71!8.47!MAF;;chr11:113930291..113930339,+!p2@ZBTB16!0.71!7.12!ZBTB16;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.17!CREB3L1;;chr12:54422268..54422278,+!p8@HOXC6!0.71!4.17!HOXC6;;chr7:27196196..27196210,-!p5@HOXA7!0.71!4.17!HOXA7;;chr3:71179746..71179783,-!p7@FOXP1!0.70!15.09!FOXP1;;chr2:19558373..19558392,-!p1@OSR1!0.70!12.15!OSR1;;chr14:21994337..21994442,-!p1@SALL2!0.69!11.78!SALL2;;chr13:37494365..37494381,-!p1@SMAD9!0.69!7.24!SMAD9;;chr8:57123815..57123867,-!p1@PLAG1!0.68!17.30!PLAG1;;chr2:113993052..113993097,-!p2@PAX8!0.68!9.45!PAX8;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.99!TWIST2;;chr5:92918956..92918969,+!p4@NR2F1!0.68!4.17!NR2F1;;chr6:1389989..1390019,+!p2@FOXF2!0.68!3.80!FOXF2;;chr2:176994408..176994492,+!p1@HOXD8!0.68!3.80!HOXD8;;chr12:54410948..54410992,+!p3@HOXC5!0.68!3.80!HOXC5;;chr19:13106214..13106382,+!p1@NFIX!0.67!99.13!NFIX;;chr12:57504975..57505019,-!p2@STAT6!0.67!16.93!STAT6;;chr10:8096631..8096660,+!p1@GATA3!0.67!4.54!GATA3;;chr3:169381420..169381535,-!p1@MECOM!0.67!4.42!MECOM;;chr5:137804130..137804156,+!p5@EGR1!0.67!3.93!EGR1;;chr17:46690839..46690884,-!p1@HOXB8!0.67!3.68!HOXB8;;chr11:125034605..125034636,+!p2@PKNOX2!0.67!3.68!PKNOX2;;chr12:66218598..66218645,+!p2@HMGA2!0.66!18.77!HMGA2;;chr18:22932080..22932170,-!p1@ZNF521!0.66!17.18!ZNF521;;chr15:42749722..42749739,-!p2@ZFP106!0.66!6.99!ZFP106;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.66!6.50!MEIS3P1;;chr10:131762504..131762555,-!p1@EBF3!0.66!3.56!EBF3;;chr10:63809013..63809041,+!p3@ARID5B!0.65!22.33!ARID5B;;chr12:54694758..54694805,-!p1@NFE2!0.65!4.29!NFE2;;chr18:53068911..53068935,-!p4@TCF4!0.65!4.05!TCF4;;chr5:158527104..158527135,-!p4@EBF1!0.65!3.44!EBF1;;chr7:15726220..15726236,-!p4@MEOX2!0.65!3.44!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!0.65!3.44!HIF3A;;chr17:59477233..59477263,+!p1@TBX2!0.64!11.90!TBX2;;chr3:12329358..12329393,+!p3@PPARG!0.64!9.20!PPARG;;chr20:30193083..30193098,+!p1@ID1!0.63!313.84!ID1;;chr17:70117153..70117174,+!p1@SOX9!0.63!39.38!SOX9;;chr8:116681409..116681431,-!p2@TRPS1!0.63!10.06!TRPS1;;chr7:27183263..27183284,-!p2@HOXA5!0.63!3.31!HOXA5;;chr15:67391010..67391046,+!p13@SMAD3!0.63!3.31!SMAD3;;chr11:125034586..125034604,+!p3@PKNOX2!0.63!3.31!PKNOX2;;chr1:61547894..61547968,+!p2@NFIA!0.62!10.67!NFIA;;chr3:147111198..147111225,+!p4@ZIC1!0.62!3.19!ZIC1;;chr10:63661437..63661465,+!p2@ARID5B!0.61!71.28!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.61!50.30!ARID5B;;chr10:63853436..63853442,+!p4@ARID5B!0.61!19.63!ARID5B;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.61!17.18!GLIS2;;chr19:13134457..13134462,+!p5@NFIX!0.61!6.01!NFIX;;chr7:137564372..137564394,-!p7@CREB3L2!0.61!5.52!CREB3L2;;chr5:92919100..92919135,+!p3@NR2F1!0.61!3.93!NR2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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002242;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007844;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11252-116F1 | |id=FF:11252-116F1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000123 | ||
|is_obsolete= | |||
|library_id=CNhs10881 | |||
|library_id_phase_based=2:CNhs10881 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11252 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.ATGTCA.11252 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11252 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.ATGTCA.11252 | |||
|name=Nucleus Pulposus Cell, donor1 | |name=Nucleus Pulposus Cell, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10881,LSID703,release008,COMPLETED | |profile_hcage=CNhs10881,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC4805 | |rna_catalog_number=SC4805 | ||
| Line 56: | Line 81: | ||
|rna_tube_id=116F1 | |rna_tube_id=116F1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.ATGTCA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 104: | ||
|sample_tissue=spinal cord | |sample_tissue=spinal cord | ||
|top_motifs=RXR{A,B,G}:2.12980632281;ATF6:1.81646133565;ZNF238:1.72012135982;FOXL1:1.67922778419;NKX6-1,2:1.50256264308;PATZ1:1.44460740172;TAL1_TCF{3,4,12}:1.43239177531;NR3C1:1.31043779343;GZF1:1.30513826296;MYBL2:1.30037005789;SOX5:1.2709778008;ZNF423:1.26964796969;NR1H4:1.24284856898;EBF1:1.14894579499;NANOG{mouse}:1.146367387;MZF1:1.08985304621;TFAP4:1.07229972722;GFI1B:1.02501224255;KLF4:0.993960954076;MAZ:0.99130200645;NFATC1..3:0.957602693528;GTF2I:0.942194656936;GTF2A1,2:0.93494122119;TLX1..3_NFIC{dimer}:0.930793871064;GLI1..3:0.878520630007;ESR1:0.871073408776;EN1,2:0.835105188167;AIRE:0.833805091995;NR6A1:0.830716794916;PAX5:0.83049406295;TEAD1:0.797027427841;DMAP1_NCOR{1,2}_SMARC:0.796249451141;ZIC1..3:0.790247761842;ZNF384:0.775231527895;UFEwm:0.760521701758;PDX1:0.739698411192;AHR_ARNT_ARNT2:0.735689081937;STAT2,4,6:0.720871643939;NFIX:0.713382356709;STAT1,3:0.707532315656;NKX2-2,8:0.703630695215;MED-1{core}:0.7010661746;HAND1,2:0.698307284206;PAX1,9:0.674138181991;NKX2-3_NKX2-5:0.670963263256;BPTF:0.663936620323;SRF:0.652445445229;PAX4:0.646536837039;RBPJ:0.632233373921;FOXD3:0.627714829933;TFCP2:0.626384089625;NKX2-1,4:0.617603061992;YY1:0.616980287083;PRDM1:0.604919142054;FOXO1,3,4:0.596741101526;ALX4:0.596561035059;MAFB:0.594470849382;MYFfamily:0.573473371716;GATA4:0.572974432047;FOX{I1,J2}:0.569134472117;HOX{A5,B5}:0.556839350804;IKZF1:0.553343692263;ZBTB6:0.552827622805;SMAD1..7,9:0.52630948375;SPZ1:0.501130357218;RREB1:0.49123824487;NHLH1,2:0.479629855129;HES1:0.470591015023;HSF1,2:0.4590617406;DBP:0.42621868747;GCM1,2:0.421402134569;MTE{core}:0.418667650414;PRRX1,2:0.405148380283;EGR1..3:0.403519885931;SP1:0.359248827192;FOX{D1,D2}:0.359058870477;XBP1:0.358258538277;MTF1:0.346444886199;HOX{A6,A7,B6,B7}:0.340977734209;TEF:0.321643300594;TBX4,5:0.298485148721;EVI1:0.297278365481;HMGA1,2:0.242991391244;LHX3,4:0.239752924708;LEF1_TCF7_TCF7L1,2:0.230136906387;MEF2{A,B,C,D}:0.223741762366;RFX2..5_RFXANK_RFXAP:0.223008185689;AR:0.206175071016;CDX1,2,4:0.200944899532;TFAP2{A,C}:0.198711786575;TBP:0.175880353314;ARID5B:0.172157290751;ESRRA:0.163737881893;NFE2L2:0.150323598525;SREBF1,2:0.121545563321;FOXN1:0.114268353041;HNF1A:0.103604831627;HMX1:0.100968645041;RFX1:0.0956038658676;HOX{A4,D4}:0.0898017193567;STAT5{A,B}:0.0809738525727;RUNX1..3:0.07828820894;TFAP2B:0.0693682241809;HNF4A_NR2F1,2:0.0688708277302;HIF1A:0.0661835212898;RXRA_VDR{dimer}:0.0502127434837;SOX17:0.0411772733817;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0332605964062;FOXP3:0.0270060201098;HIC1:0.022511311376;HLF:0.0154342612976;BREu{core}:-0.0058107524859;FOXA2:-0.00906555463974;PAX8:-0.0128631737633;NKX3-2:-0.0177802224837;NFE2:-0.0363260970057;ZFP161:-0.0384549651862;ADNP_IRX_SIX_ZHX:-0.0496064500637;NFE2L1:-0.0515218362176;POU6F1:-0.0560544872994;BACH2:-0.0589023569964;FOXQ1:-0.059007581863;TGIF1:-0.0735888761317;ZNF143:-0.0751179739198;NKX3-1:-0.0754392238664;FOX{F1,F2,J1}:-0.0914676950081;ATF2:-0.0945410041792;ONECUT1,2:-0.0985937381353;GFI1:-0.100295065619;EP300:-0.111801301038;IRF1,2:-0.117608122672;NFIL3:-0.125227533872;TP53:-0.1265344565;TOPORS:-0.141506611875;CDC5L:-0.142207449254;REST:-0.153208763279;CUX2:-0.157315304009;PAX6:-0.158130015921;ELK1,4_GABP{A,B1}:-0.167916413465;POU5F1:-0.170066593648;XCPE1{core}:-0.202759248497;CEBPA,B_DDIT3:-0.213206627369;FOSL2:-0.213556200868;IKZF2:-0.216608898171;FOS_FOS{B,L1}_JUN{B,D}:-0.229780824078;T:-0.238597484807;bHLH_family:-0.247570438593;PBX1:-0.261467635931;ATF4:-0.267350855906;CRX:-0.291527666382;NR5A1,2:-0.312283178897;IRF7:-0.329661165206;NRF1:-0.330854770849;NFKB1_REL_RELA:-0.335828679092;SOX2:-0.340019383527;RORA:-0.354261467603;CREB1:-0.358155813325;ZNF148:-0.366002322756;ATF5_CREB3:-0.381289500048;POU2F1..3:-0.393936836473;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.415983588606;FOXM1:-0.442604864234;SNAI1..3:-0.495612907441;JUN:-0.510319844874;POU3F1..4:-0.521159659447;HBP1_HMGB_SSRP1_UBTF:-0.523684564459;ETS1,2:-0.530236738235;SPI1:-0.546096488547;GATA6:-0.550699410648;TFDP1:-0.553036061934;ELF1,2,4:-0.59792877401;SPIB:-0.650794833553;PAX2:-0.672894205657;MYB:-0.675741191356;E2F1..5:-0.711350847851;FOXP1:-0.721035170954;ZBTB16:-0.754705478094;POU1F1:-0.757238124276;ZEB1:-0.769030909033;PPARG:-0.854662730769;NFY{A,B,C}:-0.943155167789;PAX3,7:-0.944887550873;SOX{8,9,10}:-0.986386566843;VSX1,2:-0.986872961502;LMO2:-1.05333782159;NANOG:-1.05988697046;TLX2:-1.08916683936;HOXA9_MEIS1:-1.08944303223;OCT4_SOX2{dimer}:-1.10739857045;ALX1:-1.13934212611;PITX1..3:-1.37172971577;MYOD1:-1.3983883299 | |top_motifs=RXR{A,B,G}:2.12980632281;ATF6:1.81646133565;ZNF238:1.72012135982;FOXL1:1.67922778419;NKX6-1,2:1.50256264308;PATZ1:1.44460740172;TAL1_TCF{3,4,12}:1.43239177531;NR3C1:1.31043779343;GZF1:1.30513826296;MYBL2:1.30037005789;SOX5:1.2709778008;ZNF423:1.26964796969;NR1H4:1.24284856898;EBF1:1.14894579499;NANOG{mouse}:1.146367387;MZF1:1.08985304621;TFAP4:1.07229972722;GFI1B:1.02501224255;KLF4:0.993960954076;MAZ:0.99130200645;NFATC1..3:0.957602693528;GTF2I:0.942194656936;GTF2A1,2:0.93494122119;TLX1..3_NFIC{dimer}:0.930793871064;GLI1..3:0.878520630007;ESR1:0.871073408776;EN1,2:0.835105188167;AIRE:0.833805091995;NR6A1:0.830716794916;PAX5:0.83049406295;TEAD1:0.797027427841;DMAP1_NCOR{1,2}_SMARC:0.796249451141;ZIC1..3:0.790247761842;ZNF384:0.775231527895;UFEwm:0.760521701758;PDX1:0.739698411192;AHR_ARNT_ARNT2:0.735689081937;STAT2,4,6:0.720871643939;NFIX:0.713382356709;STAT1,3:0.707532315656;NKX2-2,8:0.703630695215;MED-1{core}:0.7010661746;HAND1,2:0.698307284206;PAX1,9:0.674138181991;NKX2-3_NKX2-5:0.670963263256;BPTF:0.663936620323;SRF:0.652445445229;PAX4:0.646536837039;RBPJ:0.632233373921;FOXD3:0.627714829933;TFCP2:0.626384089625;NKX2-1,4:0.617603061992;YY1:0.616980287083;PRDM1:0.604919142054;FOXO1,3,4:0.596741101526;ALX4:0.596561035059;MAFB:0.594470849382;MYFfamily:0.573473371716;GATA4:0.572974432047;FOX{I1,J2}:0.569134472117;HOX{A5,B5}:0.556839350804;IKZF1:0.553343692263;ZBTB6:0.552827622805;SMAD1..7,9:0.52630948375;SPZ1:0.501130357218;RREB1:0.49123824487;NHLH1,2:0.479629855129;HES1:0.470591015023;HSF1,2:0.4590617406;DBP:0.42621868747;GCM1,2:0.421402134569;MTE{core}:0.418667650414;PRRX1,2:0.405148380283;EGR1..3:0.403519885931;SP1:0.359248827192;FOX{D1,D2}:0.359058870477;XBP1:0.358258538277;MTF1:0.346444886199;HOX{A6,A7,B6,B7}:0.340977734209;TEF:0.321643300594;TBX4,5:0.298485148721;EVI1:0.297278365481;HMGA1,2:0.242991391244;LHX3,4:0.239752924708;LEF1_TCF7_TCF7L1,2:0.230136906387;MEF2{A,B,C,D}:0.223741762366;RFX2..5_RFXANK_RFXAP:0.223008185689;AR:0.206175071016;CDX1,2,4:0.200944899532;TFAP2{A,C}:0.198711786575;TBP:0.175880353314;ARID5B:0.172157290751;ESRRA:0.163737881893;NFE2L2:0.150323598525;SREBF1,2:0.121545563321;FOXN1:0.114268353041;HNF1A:0.103604831627;HMX1:0.100968645041;RFX1:0.0956038658676;HOX{A4,D4}:0.0898017193567;STAT5{A,B}:0.0809738525727;RUNX1..3:0.07828820894;TFAP2B:0.0693682241809;HNF4A_NR2F1,2:0.0688708277302;HIF1A:0.0661835212898;RXRA_VDR{dimer}:0.0502127434837;SOX17:0.0411772733817;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0332605964062;FOXP3:0.0270060201098;HIC1:0.022511311376;HLF:0.0154342612976;BREu{core}:-0.0058107524859;FOXA2:-0.00906555463974;PAX8:-0.0128631737633;NKX3-2:-0.0177802224837;NFE2:-0.0363260970057;ZFP161:-0.0384549651862;ADNP_IRX_SIX_ZHX:-0.0496064500637;NFE2L1:-0.0515218362176;POU6F1:-0.0560544872994;BACH2:-0.0589023569964;FOXQ1:-0.059007581863;TGIF1:-0.0735888761317;ZNF143:-0.0751179739198;NKX3-1:-0.0754392238664;FOX{F1,F2,J1}:-0.0914676950081;ATF2:-0.0945410041792;ONECUT1,2:-0.0985937381353;GFI1:-0.100295065619;EP300:-0.111801301038;IRF1,2:-0.117608122672;NFIL3:-0.125227533872;TP53:-0.1265344565;TOPORS:-0.141506611875;CDC5L:-0.142207449254;REST:-0.153208763279;CUX2:-0.157315304009;PAX6:-0.158130015921;ELK1,4_GABP{A,B1}:-0.167916413465;POU5F1:-0.170066593648;XCPE1{core}:-0.202759248497;CEBPA,B_DDIT3:-0.213206627369;FOSL2:-0.213556200868;IKZF2:-0.216608898171;FOS_FOS{B,L1}_JUN{B,D}:-0.229780824078;T:-0.238597484807;bHLH_family:-0.247570438593;PBX1:-0.261467635931;ATF4:-0.267350855906;CRX:-0.291527666382;NR5A1,2:-0.312283178897;IRF7:-0.329661165206;NRF1:-0.330854770849;NFKB1_REL_RELA:-0.335828679092;SOX2:-0.340019383527;RORA:-0.354261467603;CREB1:-0.358155813325;ZNF148:-0.366002322756;ATF5_CREB3:-0.381289500048;POU2F1..3:-0.393936836473;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.415983588606;FOXM1:-0.442604864234;SNAI1..3:-0.495612907441;JUN:-0.510319844874;POU3F1..4:-0.521159659447;HBP1_HMGB_SSRP1_UBTF:-0.523684564459;ETS1,2:-0.530236738235;SPI1:-0.546096488547;GATA6:-0.550699410648;TFDP1:-0.553036061934;ELF1,2,4:-0.59792877401;SPIB:-0.650794833553;PAX2:-0.672894205657;MYB:-0.675741191356;E2F1..5:-0.711350847851;FOXP1:-0.721035170954;ZBTB16:-0.754705478094;POU1F1:-0.757238124276;ZEB1:-0.769030909033;PPARG:-0.854662730769;NFY{A,B,C}:-0.943155167789;PAX3,7:-0.944887550873;SOX{8,9,10}:-0.986386566843;VSX1,2:-0.986872961502;LMO2:-1.05333782159;NANOG:-1.05988697046;TLX2:-1.08916683936;HOXA9_MEIS1:-1.08944303223;OCT4_SOX2{dimer}:-1.10739857045;ALX1:-1.13934212611;PITX1..3:-1.37172971577;MYOD1:-1.3983883299 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11252-116F1;search_select_hide=table117:FF:11252-116F1 | |||
}} | }} | ||
Latest revision as of 16:28, 3 June 2020
| Name: | Nucleus Pulposus Cell, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10881 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10881
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10881
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.248 |
| 10 | 10 | 0.272 |
| 100 | 100 | 0.417 |
| 101 | 101 | 0.576 |
| 102 | 102 | 0.0155 |
| 103 | 103 | 0.355 |
| 104 | 104 | 0.661 |
| 105 | 105 | 0.717 |
| 106 | 106 | 0.765 |
| 107 | 107 | 0.0205 |
| 108 | 108 | 0.954 |
| 109 | 109 | 0.0474 |
| 11 | 11 | 0.32 |
| 110 | 110 | 0.454 |
| 111 | 111 | 0.143 |
| 112 | 112 | 0.217 |
| 113 | 113 | 0.103 |
| 114 | 114 | 0.414 |
| 115 | 115 | 0.634 |
| 116 | 116 | 0.295 |
| 117 | 117 | 0.151 |
| 118 | 118 | 0.545 |
| 119 | 119 | 0.138 |
| 12 | 12 | 0.114 |
| 120 | 120 | 0.236 |
| 121 | 121 | 0.161 |
| 122 | 122 | 0.0153 |
| 123 | 123 | 9.37425e-6 |
| 124 | 124 | 0.261 |
| 125 | 125 | 0.125 |
| 126 | 126 | 0.875 |
| 127 | 127 | 0.0873 |
| 128 | 128 | 0.319 |
| 129 | 129 | 0.653 |
| 13 | 13 | 0.0696 |
| 130 | 130 | 0.25 |
| 131 | 131 | 0.0577 |
| 132 | 132 | 0.0109 |
| 133 | 133 | 0.819 |
| 134 | 134 | 0.64 |
| 135 | 135 | 0.554 |
| 136 | 136 | 0.8 |
| 137 | 137 | 0.0751 |
| 138 | 138 | 0.21 |
| 139 | 139 | 0.461 |
| 14 | 14 | 0.912 |
| 140 | 140 | 0.217 |
| 141 | 141 | 0.03 |
| 142 | 142 | 0.893 |
| 143 | 143 | 0.264 |
| 144 | 144 | 0.151 |
| 145 | 145 | 0.654 |
| 146 | 146 | 0.549 |
| 147 | 147 | 0.482 |
| 148 | 148 | 0.958 |
| 149 | 149 | 0.117 |
| 15 | 15 | 0.147 |
| 150 | 150 | 0.895 |
| 151 | 151 | 0.633 |
| 152 | 152 | 0.683 |
| 153 | 153 | 0.549 |
| 154 | 154 | 0.278 |
| 155 | 155 | 0.113 |
| 156 | 156 | 0.252 |
| 157 | 157 | 0.764 |
| 158 | 158 | 0.0449 |
| 159 | 159 | 0.472 |
| 16 | 16 | 0.584 |
| 160 | 160 | 0.436 |
| 161 | 161 | 0.775 |
| 162 | 162 | 0.159 |
| 163 | 163 | 0.835 |
| 164 | 164 | 0.811 |
| 165 | 165 | 0.556 |
| 166 | 166 | 0.323 |
| 167 | 167 | 0.102 |
| 168 | 168 | 0.696 |
| 169 | 169 | 0.236 |
| 17 | 17 | 0.87 |
| 18 | 18 | 0.932 |
| 19 | 19 | 0.0998 |
| 2 | 2 | 0.174 |
| 20 | 20 | 0.822 |
| 21 | 21 | 0.752 |
| 22 | 22 | 0.217 |
| 23 | 23 | 0.818 |
| 24 | 24 | 0.85 |
| 25 | 25 | 0.235 |
| 26 | 26 | 0.345 |
| 27 | 27 | 0.551 |
| 28 | 28 | 0.383 |
| 29 | 29 | 0.617 |
| 3 | 3 | 0.913 |
| 30 | 30 | 0.104 |
| 31 | 31 | 0.436 |
| 32 | 32 | 7.96639e-6 |
| 33 | 33 | 0.947 |
| 34 | 34 | 0.666 |
| 35 | 35 | 0.769 |
| 36 | 36 | 0.0372 |
| 37 | 37 | 0.619 |
| 38 | 38 | 0.337 |
| 39 | 39 | 0.363 |
| 4 | 4 | 0.0146 |
| 40 | 40 | 0.0043 |
| 41 | 41 | 0.0165 |
| 42 | 42 | 0.757 |
| 43 | 43 | 0.497 |
| 44 | 44 | 0.836 |
| 45 | 45 | 0.232 |
| 46 | 46 | 0.988 |
| 47 | 47 | 0.0938 |
| 48 | 48 | 0.207 |
| 49 | 49 | 0.286 |
| 5 | 5 | 0.741 |
| 50 | 50 | 0.457 |
| 51 | 51 | 0.606 |
| 52 | 52 | 0.566 |
| 53 | 53 | 0.121 |
| 54 | 54 | 0.718 |
| 55 | 55 | 0.708 |
| 56 | 56 | 0.844 |
| 57 | 57 | 0.447 |
| 58 | 58 | 0.373 |
| 59 | 59 | 0.12 |
| 6 | 6 | 0.385 |
| 60 | 60 | 0.591 |
| 61 | 61 | 0.381 |
| 62 | 62 | 0.563 |
| 63 | 63 | 0.832 |
| 64 | 64 | 0.266 |
| 65 | 65 | 0.907 |
| 66 | 66 | 0.271 |
| 67 | 67 | 0.515 |
| 68 | 68 | 0.556 |
| 69 | 69 | 0.606 |
| 7 | 7 | 0.245 |
| 70 | 70 | 0.546 |
| 71 | 71 | 0.13 |
| 72 | 72 | 0.794 |
| 73 | 73 | 0.815 |
| 74 | 74 | 0.338 |
| 75 | 75 | 0.208 |
| 76 | 76 | 0.633 |
| 77 | 77 | 0.449 |
| 78 | 78 | 0.353 |
| 79 | 79 | 0.052 |
| 8 | 8 | 0.98 |
| 80 | 80 | 0.974 |
| 81 | 81 | 0.585 |
| 82 | 82 | 0.661 |
| 83 | 83 | 0.982 |
| 84 | 84 | 0.294 |
| 85 | 85 | 0.789 |
| 86 | 86 | 0.741 |
| 87 | 87 | 0.11 |
| 88 | 88 | 0.2 |
| 89 | 89 | 0.147 |
| 9 | 9 | 0.308 |
| 90 | 90 | 0.464 |
| 91 | 91 | 0.497 |
| 92 | 92 | 0.581 |
| 93 | 93 | 0.303 |
| 94 | 94 | 0.58 |
| 95 | 95 | 0.031 |
| 96 | 96 | 0.679 |
| 97 | 97 | 0.448 |
| 98 | 98 | 0.343 |
| 99 | 99 | 0.00273 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10881
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000123 human nucleus pulposus cell of intervertebral disc sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002564 (nucleus pulposus cell of intervertebral disc)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004905 (articulation)
0011135 (intervertebral cartilage)
0000075 (subdivision of skeletal system)
0002216 (symphysis)
0004765 (skeletal element)
0011134 (nonsynovial joint)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0000982 (skeletal joint)
0010317 (germ layer / neural crest derived structure)
0007844 (cartilage element)
0002242 (nucleus pulposus)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
0011138 (post-cranial axial skeletal system)
0001130 (vertebral column)
0001066 (intervertebral disk)
0001468 (intervertebral joint)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000123 (human nucleus pulposus cell of intervertebral disc sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
