FF:11281-116I3: Difference between revisions

Latest revision as of 16:30, 3 June 2020

Name:	Skeletal Muscle Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11083
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skeletal muscle
dev stage	22 weeks old fetus
sex	unknown
age	embryo 22week
cell type	skeletal muscle cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1424
catalog number	CA150-R10f
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005609

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11083		CAGE		DRX008452		DRR009324

Accession ID Hg19

Library id		BAM		CTSS
CNhs11083		DRZ000749		DRZ002134

Accession ID Hg38

Library id		BAM		CTSS
CNhs11083		DRZ012099		DRZ013484

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005609

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10005.GTAGAG		sRNA-Seq		DRX037062		DRR041428

Accession ID Hg19

Library id		BAM		CTSS
SRhi10005.GTAGAG		DRZ007070

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.11
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.196
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.0401
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0.0768
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.111
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.124
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.393
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0768
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.573
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.165
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.186
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.249
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.111
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0401
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0401
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.196
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.111
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0401
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.353
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.157
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.199
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.111
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.111
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.171
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.438
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11083

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0974
MA0003.1	MA0003.1	0.156
MA0004.1	MA0004.1	0.487
MA0006.1	MA0006.1	0.441
MA0007.1	MA0007.1	0.17
MA0009.1	MA0009.1	0.0642
MA0014.1	MA0014.1	0.537
MA0017.1	MA0017.1	0.0958
MA0018.2	MA0018.2	0.0553
MA0019.1	MA0019.1	0.45
MA0024.1	MA0024.1	0.255
MA0025.1	MA0025.1	0.758
MA0027.1	MA0027.1	0.217
MA0028.1	MA0028.1	0.469
MA0029.1	MA0029.1	0.467
MA0030.1	MA0030.1	0.513
MA0031.1	MA0031.1	0.0703
MA0035.2	MA0035.2	0.167
MA0038.1	MA0038.1	0.449
MA0039.2	MA0039.2	0.127
MA0040.1	MA0040.1	0.686
MA0041.1	MA0041.1	0.777
MA0042.1	MA0042.1	0.898
MA0043.1	MA0043.1	0.208
MA0046.1	MA0046.1	0.482
MA0047.2	MA0047.2	0.0671
MA0048.1	MA0048.1	0.932
MA0050.1	MA0050.1	0.00358
MA0051.1	MA0051.1	0.0665
MA0052.1	MA0052.1	0.246
MA0055.1	MA0055.1	0.134
MA0057.1	MA0057.1	0.949
MA0058.1	MA0058.1	0.653
MA0059.1	MA0059.1	0.206
MA0060.1	MA0060.1	7.20639e-4
MA0061.1	MA0061.1	0.259
MA0062.2	MA0062.2	0.00276
MA0065.2	MA0065.2	0.234
MA0066.1	MA0066.1	0.93
MA0067.1	MA0067.1	0.00911
MA0068.1	MA0068.1	0.0408
MA0069.1	MA0069.1	0.276
MA0070.1	MA0070.1	0.026
MA0071.1	MA0071.1	0.965
MA0072.1	MA0072.1	0.351
MA0073.1	MA0073.1	0.861
MA0074.1	MA0074.1	0.3
MA0076.1	MA0076.1	0.598
MA0077.1	MA0077.1	0.301
MA0078.1	MA0078.1	0.765
MA0079.2	MA0079.2	0.987
MA0080.2	MA0080.2	1.64858e-11
MA0081.1	MA0081.1	0.0167
MA0083.1	MA0083.1	0.0277
MA0084.1	MA0084.1	0.0657
MA0087.1	MA0087.1	0.578
MA0088.1	MA0088.1	0.0977
MA0090.1	MA0090.1	0.0242
MA0091.1	MA0091.1	1.88517e-4
MA0092.1	MA0092.1	0.509
MA0093.1	MA0093.1	0.511
MA0099.2	MA0099.2	0.158
MA0100.1	MA0100.1	0.659
MA0101.1	MA0101.1	0.0161
MA0102.2	MA0102.2	0.214
MA0103.1	MA0103.1	0.0964
MA0104.2	MA0104.2	0.651
MA0105.1	MA0105.1	0.564
MA0106.1	MA0106.1	0.153
MA0107.1	MA0107.1	0.0589
MA0108.2	MA0108.2	2.31564e-5
MA0111.1	MA0111.1	0.205
MA0112.2	MA0112.2	0.353
MA0113.1	MA0113.1	0.576
MA0114.1	MA0114.1	0.0342
MA0115.1	MA0115.1	0.04
MA0116.1	MA0116.1	0.281
MA0117.1	MA0117.1	0.039
MA0119.1	MA0119.1	0.677
MA0122.1	MA0122.1	0.42
MA0124.1	MA0124.1	0.377
MA0125.1	MA0125.1	0.737
MA0131.1	MA0131.1	0.394
MA0135.1	MA0135.1	0.247
MA0136.1	MA0136.1	1.14546e-9
MA0137.2	MA0137.2	0.509
MA0138.2	MA0138.2	0.932
MA0139.1	MA0139.1	0.93
MA0140.1	MA0140.1	0.00709
MA0141.1	MA0141.1	0.863
MA0142.1	MA0142.1	0.00376
MA0143.1	MA0143.1	0.981
MA0144.1	MA0144.1	0.191
MA0145.1	MA0145.1	0.304
MA0146.1	MA0146.1	0.191
MA0147.1	MA0147.1	0.47
MA0148.1	MA0148.1	0.0204
MA0149.1	MA0149.1	0.123
MA0150.1	MA0150.1	0.00259
MA0152.1	MA0152.1	0.0185
MA0153.1	MA0153.1	0.493
MA0154.1	MA0154.1	0.465
MA0155.1	MA0155.1	0.0339
MA0156.1	MA0156.1	1.22632e-8
MA0157.1	MA0157.1	0.0658
MA0159.1	MA0159.1	0.866
MA0160.1	MA0160.1	0.0105
MA0162.1	MA0162.1	0.122
MA0163.1	MA0163.1	0.245
MA0164.1	MA0164.1	0.379
MA0258.1	MA0258.1	0.476
MA0259.1	MA0259.1	0.916

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11083

Novel motif	Logo	P-value
1	1	0.286
10	10	0.0288
100	100	0.917
101	101	0.389
102	102	0.789
103	103	0.693
104	104	0.168
105	105	0.762
106	106	0.261
107	107	0.154
108	108	0.735
109	109	0.641
11	11	0.996
110	110	0.263
111	111	0.192
112	112	0.273
113	113	0.669
114	114	0.205
115	115	0.806
116	116	0.112
117	117	0.867
118	118	0.163
119	119	0.842
12	12	0.497
120	120	0.29
121	121	0.737
122	122	0.0247
123	123	0.00166
124	124	0.247
125	125	0.869
126	126	0.441
127	127	0.432
128	128	0.579
129	129	0.482
13	13	0.96
130	130	0.0847
131	131	0.883
132	132	0.268
133	133	0.522
134	134	0.067
135	135	0.648
136	136	0.138
137	137	0.044
138	138	0.153
139	139	0.86
14	14	0.508
140	140	0.03
141	141	0.0276
142	142	0.78
143	143	0.136
144	144	0.66
145	145	0.49
146	146	0.481
147	147	0.638
148	148	0.313
149	149	0.0493
15	15	0.131
150	150	0.893
151	151	0.784
152	152	0.0501
153	153	0.372
154	154	0.18
155	155	0.0481
156	156	0.217
157	157	0.98
158	158	0.0128
159	159	0.616
16	16	0.596
160	160	0.765
161	161	0.672
162	162	0.0315
163	163	0.176
164	164	0.935
165	165	0.526
166	166	0.998
167	167	0.0654
168	168	0.836
169	169	0.117
17	17	0.675
18	18	0.39
19	19	0.0807
2	2	0.159
20	20	0.383
21	21	0.337
22	22	0.335
23	23	0.565
24	24	0.363
25	25	0.193
26	26	0.611
27	27	0.553
28	28	0.0766
29	29	0.939
3	3	0.579
30	30	0.216
31	31	0.774
32	32	0.00808
33	33	0.829
34	34	0.541
35	35	0.519
36	36	0.163
37	37	0.31
38	38	0.269
39	39	0.111
4	4	0.595
40	40	0.343
41	41	0.011
42	42	0.518
43	43	0.512
44	44	0.745
45	45	0.793
46	46	0.823
47	47	0.659
48	48	0.761
49	49	0.314
5	5	0.231
50	50	0.375
51	51	0.708
52	52	0.667
53	53	0.364
54	54	0.91
55	55	0.225
56	56	0.717
57	57	0.404
58	58	0.132
59	59	0.249
6	6	0.812
60	60	0.332
61	61	0.811
62	62	0.233
63	63	0.946
64	64	0.914
65	65	0.696
66	66	0.554
67	67	0.835
68	68	0.428
69	69	0.903
7	7	0.348
70	70	0.92
71	71	0.141
72	72	0.555
73	73	0.0963
74	74	0.55
75	75	0.968
76	76	0.339
77	77	0.373
78	78	0.0338
79	79	0.00471
8	8	0.994
80	80	0.667
81	81	0.351
82	82	0.892
83	83	0.143
84	84	0.702
85	85	0.696
86	86	0.789
87	87	0.744
88	88	0.586
89	89	0.301
9	9	0.387
90	90	0.185
91	91	0.666
92	92	0.845
93	93	0.57
94	94	0.432
95	95	0.948
96	96	0.884
97	97	0.718
98	98	0.0937
99	99	0.00177

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11083

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000162 human skeletal muscle cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008344
+|DRA_sample_Accession=CAGE@SAMD00005609
-|accession_numbers=CAGE;DRX008452;DRR009324;DRZ000749;DRZ002134
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005609
+|accession_numbers=CAGE;DRX008452;DRR009324;DRZ000749;DRZ002134;DRZ012099;DRZ013484
+|accession_numbers_RNASeq=sRNA-Seq;DRX037062;DRR041428;DRZ007070
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.40!247.48!MYOG;;chr11:17741111..17741124,+!p1@MYOD1!2.21!162.79!MYOD1;;chr8:25902876..25902936,-!p1@EBF2!1.92!81.98!EBF2;;chr15:57511609..57511651,+!p2@TCF12!1.79!99.86!TCF12;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.75!54.72!HOXC5;;chr14:61116183..61116208,-!p1@SIX1!1.73!193.15!SIX1;;chr11:17741254..17741282,+!p2@MYOD1!1.56!34.90!MYOD1;;chr1:40105299..40105326,-!p1@HEYL!1.55!34.80!HEYL;;chr16:1031762..1031781,+!p1@SOX8!1.49!29.77!SOX8;;chr8:72756637..72756664,-!p3@MSC!1.38!26.00!MSC;;chr1:170633348..170633399,+!p2@PRRX1!1.33!27.36!PRRX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.33!20.20!PKNOX2;;chr8:72756667..72756736,-!p2@MSC!1.32!30.84!MSC;;chr12:66218255..66218304,+!p3@HMGA2!1.29!48.82!HMGA2;;chr10:104001259..104001274,-!p1@PITX3!1.28!17.98!PITX3;;chr1:170632285..170632309,+!p1@PRRX1!1.27!19.82!PRRX1;;chr17:46132044..46132080,+!p4@NFE2L1!1.27!17.79!NFE2L1;;chr12:54393880..54393962,+!p1@HOXC9!1.27!17.79!HOXC9;;chr17:1959369..1959388,+!p2@HIC1!1.26!44.95!HIC1;;chr7:15726296..15726315,-!p1@MEOX2!1.23!16.05!MEOX2;;chr19:50432453..50432468,+!p1@ATF5!1.20!810.78!ATF5;;chr10:131762504..131762555,-!p1@EBF3!1.20!14.69!EBF3;;chr7:27205136..27205164,-!p1@HOXA9!1.19!14.60!HOXA9;;chr5:72744594..72744609,-!p1@FOXD1!1.18!63.61!FOXD1;;chr19:13134772..13134822,+!p2@NFIX!1.15!19.53!NFIX;;chr2:239756671..239756732,+!p1@TWIST2!1.14!40.99!TWIST2;;chr11:125034605..125034636,+!p2@PKNOX2!1.13!12.57!PKNOX2;;chr12:54378923..54378966,+!p1@HOXC10!1.13!12.47!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.12!12.28!HOXC5;;chr11:46299199..46299233,+!p1@CREB3L1!1.11!61.48!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!1.11!55.30!HMGA2;;chr5:134369905..134369972,-!p1@PITX1!1.07!16.43!PITX1;;chr12:81110684..81110700,+!p1@MYF5!1.07!10.83!MYF5;;chr1:119530493..119530572,-!p1@TBX15!1.06!10.44!TBX15;;chr8:116673894..116673913,-!p12@TRPS1!1.05!10.15!TRPS1;;chr7:27196267..27196311,-!p1@HOXA7!1.04!10.05!HOXA7;;chr4:174450089..174450153,-!p2@HAND2!1.04!9.96!HAND2;;chr21:36421535..36421610,-!p2@RUNX1!1.03!34.90!RUNX1;;chr8:72756063..72756125,-!p1@MSC!1.01!18.75!MSC;;chr8:72756267..72756296,-!p4@MSC!1.01!13.73!MSC;;chr1:170632723..170632739,+!p8@PRRX1!1.01!9.18!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.00!277.06!HMGA1;;chr15:42749722..42749739,-!p2@ZFP106!0.98!15.76!ZFP106;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.51!HOXD8;;chr11:17741084..17741094,+!p3@MYOD1!0.97!8.41!MYOD1;;chr2:45236540..45236577,-!p1@SIX2!0.96!8.12!SIX2;;chr10:104001289..104001310,-!p2@PITX3!0.95!7.83!PITX3;;chr8:49833948..49833973,-!p2@SNAI2!0.93!49.30!SNAI2;;chr12:66218212..66218244,+!p5@HMGA2!0.93!11.12!HMGA2;;chr2:5832508..5832524,+!p1@SOX11!0.93!7.54!SOX11;;chr2:24714729..24714761,+!p1@NCOA1!0.93!7.44!NCOA1;;chr16:8962202..8962222,-!p3@CARHSP1!0.92!13.15!CARHSP1;;chr14:61116168..61116180,-!p2@SIX1!0.92!8.51!SIX1;;chr2:102091144..102091183,-!p2@RFX8!0.91!7.15!RFX8;;chr7:27224842..27224872,-!p1@HOXA11!0.91!7.15!HOXA11;;chr7:27192185..27192209,-!p1@HOXA3!0.91!7.06!HOXA3;;chr5:134369879..134369898,-!p2@PITX1!0.90!6.96!PITX1;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.86!MEOX2;;chr6:34204672..34204692,+!p1@HMGA1!0.89!802.27!HMGA1;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.16!ZNF521;;chr6:85474299..85474324,-!p1@TBX18!0.89!12.57!TBX18;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.77!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!0.87!6.38!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!0.86!16.14!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.86!11.02!CREB3L1;;chr5:321810..321877,+!p1@AHRR!0.84!20.01!AHRR;;chr12:66218183..66218209,+!p4@HMGA2!0.84!11.70!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!0.84!6.86!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!0.83!57.91!HMGA2;;chr17:1958388..1958404,+!p1@HIC1!0.83!39.34!HIC1;;chr17:59477233..59477263,+!p1@TBX2!0.83!19.04!TBX2;;chr12:125003087..125003141,-!p4@NCOR2!0.83!7.64!NCOR2;;chr15:83953397..83953425,-!p1@BNC1!0.83!6.77!BNC1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.83!5.70!PEG3;;chr19:45260775..45260838,+!p5@BCL3!0.82!7.54!BCL3;;chr8:72756023..72756055,-!p6@MSC!0.82!7.06!MSC;;chr15:57511589..57511608,+!p4@TCF12!0.82!5.61!TCF12;;chr19:2867325..2867348,+!p1@ZNF556!0.82!5.61!ZNF556;;chr4:26323764..26323821,+!p15@RBPJ!0.81!5.51!RBPJ;;chr8:72755987..72756002,-!p7@MSC!0.81!5.51!MSC;;chr1:40367668..40367684,-!p2@MYCL1!0.81!5.41!MYCL1;;chr8:49833978..49833996,-!p1@SNAI2!0.80!118.71!SNAI2;;chr18:3449821..3449860,+!p7@TGIF1!0.80!10.15!TGIF1;;chr2:239756739..239756755,+!p2@TWIST2!0.80!9.47!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!0.80!5.90!PRRX1;;chr7:150945754..150945789,-!p2@SMARCD3!0.79!17.01!SMARCD3;;chr1:40367530..40367597,-!p1@MYCL1!0.79!9.76!MYCL1;;chr12:54410948..54410992,+!p3@HOXC5!0.79!5.22!HOXC5;;chr5:72744445..72744466,-!p2@FOXD1!0.78!8.70!FOXD1;;chr11:125034586..125034604,+!p3@PKNOX2!0.78!5.03!PKNOX2;;chr12:54402745..54402788,+!p1@HOXC8!0.78!5.03!HOXC8;;chr9:132427883..132427951,+!p2@PRRX2!0.78!5.03!PRRX2;;chr20:42543441..4254349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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
 |ffid_belonging_in_development=CL:0000355,CL:0000222
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor1.CNhs11083.11281-116I3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor1.CNhs11083.11281-116I3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor1.CNhs11083.11281-116I3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor1.CNhs11083.11281-116I3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor1.CNhs11083.11281-116I3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11281-116I3
 |is_a=EFO:0002091;;FF:0000162
 |is_obsolete=
 |library_id=CNhs11083
-|library_id_phase_based=1:CNhs11083
+|library_id_phase_based=2:CNhs11083
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11281
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTAGAG.11281
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11281
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTAGAG.11281
 |name=Skeletal Muscle Cells, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11083,LSID724,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10005,,,
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@@ Line 67: / Line 82: @@
 |rna_tube_id=116I3
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10005.GTAGAG
 |sample_age=embryo 22week
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11281-116I3;search_select_hide=table117:FF:11281-116I3
 }}

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FF:11281-116I3: Difference between revisions

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Latest revision as of 16:30, 3 June 2020

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