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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005609
|accession_numbers=CAGE;DRX008452;DRR009324;DRZ000749;DRZ002134
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005609
|accession_numbers=CAGE;DRX008452;DRR009324;DRZ000749;DRZ002134;DRZ012099;DRZ013484
|accession_numbers_RNASeq=sRNA-Seq;DRX037062;DRR041428;DRZ007070
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTAGAG.11281
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTAGAG.11281
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11281
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTAGAG.11281
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTAGAG.11281
|name=Skeletal Muscle Cells, donor1
|name=Skeletal Muscle Cells, donor1
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 78: Line 82:
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|sample_category=primary cells
Line 101: Line 106:
|top_motifs=RXR{A,B,G}:1.70609303723;SPZ1:1.52355570399;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.49343221303;GTF2A1,2:1.27100804029;NHLH1,2:1.23891535184;EN1,2:1.22534312355;MYBL2:1.22518024761;PATZ1:1.13143357791;ZNF238:1.09518648336;TFAP4:0.995306078112;HES1:0.992344236172;SRF:0.992092808649;HOX{A4,D4}:0.953588146383;GFI1B:0.951523102981;RREB1:0.949778928974;TAL1_TCF{3,4,12}:0.889434201819;PAX5:0.875264636509;GLI1..3:0.858840276329;TFAP2{A,C}:0.779939662754;MYOD1:0.757085280957;FOXD3:0.733267542186;TEAD1:0.728421682677;NR3C1:0.718377497093;GCM1,2:0.694956268152;TLX1..3_NFIC{dimer}:0.677592425717;FOXL1:0.67051845921;bHLH_family:0.667548046843;IKZF1:0.66709375777;KLF4:0.657588839563;EVI1:0.656488643461;TBP:0.656429516403;TP53:0.647025621368;ZIC1..3:0.646634034442;MZF1:0.6307545892;PRDM1:0.629270971698;GTF2I:0.606654468245;LHX3,4:0.603088216671;TFAP2B:0.596101538027;UFEwm:0.594978615567;ALX4:0.584237651711;NKX6-1,2:0.548503189966;MEF2{A,B,C,D}:0.546780206408;ZNF143:0.536718738883;LMO2:0.532640641142;TFCP2:0.52941776784;NKX2-2,8:0.519113502134;NKX3-1:0.516434441542;NFIX:0.501327154599;YY1:0.492064617948;NR6A1:0.48633507516;ELK1,4_GABP{A,B1}:0.485338987685;ZNF148:0.484568504979;HAND1,2:0.444370520835;MAZ:0.430417724667;GATA4:0.424060337464;ZNF384:0.415686968053;POU3F1..4:0.41402697327;NANOG{mouse}:0.413847175585;TBX4,5:0.397403622618;ESR1:0.393838292756;SMAD1..7,9:0.393387880326;ZNF423:0.39331617351;MYFfamily:0.38005750363;SOX17:0.376106171355;NR1H4:0.348315005396;CEBPA,B_DDIT3:0.345178555236;HLF:0.343201920892;MED-1{core}:0.340416982901;HOX{A5,B5}:0.333236333857;MTE{core}:0.324267360609;GZF1:0.301692826826;CDC5L:0.301322125022;PBX1:0.295352959128;HIC1:0.294004995289;NFATC1..3:0.286605506151;RFX1:0.271346935352;PAX1,9:0.264731125315;STAT2,4,6:0.256314372025;RXRA_VDR{dimer}:0.253060428761;SOX{8,9,10}:0.245889127578;EBF1:0.241204715915;ADNP_IRX_SIX_ZHX:0.237599259281;SP1:0.221195473082;STAT1,3:0.218516003715;ZBTB6:0.216679521041;PPARG:0.200094557222;CRX:0.188771640522;NFIL3:0.180498434742;JUN:0.169819019008;REST:0.166467162626;AHR_ARNT_ARNT2:0.154547276899;TOPORS:0.154387228766;NFE2L1:0.127806175218;POU6F1:0.119233372073;XCPE1{core}:0.11530076906;NFE2L2:0.109256079105;HSF1,2:0.0882852718157;BACH2:0.0874525714445;BPTF:0.0792995114562;NRF1:0.075391727636;SOX2:0.0695734727992;FOXM1:0.0677975658321;RBPJ:0.066969712776;HMX1:0.0666821912778;DMAP1_NCOR{1,2}_SMARC:0.0549839836195;CDX1,2,4:0.0528824108976;LEF1_TCF7_TCF7L1,2:0.0518814827019;NR5A1,2:0.0410601471077;TFDP1:0.0148081011051;DBP:0.0144364462913;SOX5:-0.00589313809055;RUNX1..3:-0.00730436260903;EP300:-0.0114443709677;PAX8:-0.0145176534922;HNF1A:-0.0160540026501;CUX2:-0.0231838456743;GFI1:-0.0367791795472;FOXO1,3,4:-0.0470417980422;MAFB:-0.0568941729171;PRRX1,2:-0.0594376543756;FOXQ1:-0.0665911848351;ZFP161:-0.0714943973549;FOS_FOS{B,L1}_JUN{B,D}:-0.0720774819177;NFE2:-0.0809903027864;TGIF1:-0.0844421831823;TEF:-0.110646756333;T:-0.110930509003;ESRRA:-0.127223107752;HOX{A6,A7,B6,B7}:-0.130381937835;EGR1..3:-0.143955518281;CREB1:-0.145146832411;NKX2-3_NKX2-5:-0.168051329463;NFKB1_REL_RELA:-0.173250896756;E2F1..5:-0.177683585697;FOXP1:-0.177959767816;ONECUT1,2:-0.18091979169;PDX1:-0.192169308887;HIF1A:-0.207420450935;IRF1,2:-0.210500939889;FOSL2:-0.224889276919;MYB:-0.24390967448;POU2F1..3:-0.25643677066;XBP1:-0.258034258567;RFX2..5_RFXANK_RFXAP:-0.27361445769;AIRE:-0.279007628554;ATF2:-0.28170118858;SNAI1..3:-0.298894457883;STAT5{A,B}:-0.321634344639;MTF1:-0.323278834046;FOX{F1,F2,J1}:-0.325134228002;ATF4:-0.331303900081;HNF4A_NR2F1,2:-0.344576018752;AR:-0.382976615025;PAX6:-0.399950853862;POU1F1:-0.40675367015;POU5F1:-0.419314548544;TLX2:-0.421435635906;IRF7:-0.428223439915;NKX3-2:-0.439016886089;PAX2:-0.44721247413;NANOG:-0.47749645609;HMGA1,2:-0.479026018799;SPI1:-0.486878611591;PITX1..3:-0.504726763144;ARID5B:-0.508600133302;ATF6:-0.51929172402;SPIB:-0.531471167123;NFY{A,B,C}:-0.554737837235;ELF1,2,4:-0.563447149192;FOX{D1,D2}:-0.578197465175;PAX4:-0.600773474598;BREu{core}:-0.607123405268;ZEB1:-0.607552222736;IKZF2:-0.616549096814;ALX1:-0.619093034983;OCT4_SOX2{dimer}:-0.621137628278;PAX3,7:-0.632349082914;NKX2-1,4:-0.651358610336;RORA:-0.655353691205;FOXA2:-0.658269669947;ETS1,2:-0.66768586594;HBP1_HMGB_SSRP1_UBTF:-0.691712283599;VSX1,2:-0.708172583561;SREBF1,2:-0.716762984774;FOXP3:-0.726436603363;GATA6:-0.731511227833;FOXN1:-0.840043934939;ATF5_CREB3:-0.862302982002;FOX{I1,J2}:-1.09365176531;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18851064258;ZBTB16:-1.21658069388;HOXA9_MEIS1:-1.42550162421
|top_motifs=RXR{A,B,G}:1.70609303723;SPZ1:1.52355570399;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.49343221303;GTF2A1,2:1.27100804029;NHLH1,2:1.23891535184;EN1,2:1.22534312355;MYBL2:1.22518024761;PATZ1:1.13143357791;ZNF238:1.09518648336;TFAP4:0.995306078112;HES1:0.992344236172;SRF:0.992092808649;HOX{A4,D4}:0.953588146383;GFI1B:0.951523102981;RREB1:0.949778928974;TAL1_TCF{3,4,12}:0.889434201819;PAX5:0.875264636509;GLI1..3:0.858840276329;TFAP2{A,C}:0.779939662754;MYOD1:0.757085280957;FOXD3:0.733267542186;TEAD1:0.728421682677;NR3C1:0.718377497093;GCM1,2:0.694956268152;TLX1..3_NFIC{dimer}:0.677592425717;FOXL1:0.67051845921;bHLH_family:0.667548046843;IKZF1:0.66709375777;KLF4:0.657588839563;EVI1:0.656488643461;TBP:0.656429516403;TP53:0.647025621368;ZIC1..3:0.646634034442;MZF1:0.6307545892;PRDM1:0.629270971698;GTF2I:0.606654468245;LHX3,4:0.603088216671;TFAP2B:0.596101538027;UFEwm:0.594978615567;ALX4:0.584237651711;NKX6-1,2:0.548503189966;MEF2{A,B,C,D}:0.546780206408;ZNF143:0.536718738883;LMO2:0.532640641142;TFCP2:0.52941776784;NKX2-2,8:0.519113502134;NKX3-1:0.516434441542;NFIX:0.501327154599;YY1:0.492064617948;NR6A1:0.48633507516;ELK1,4_GABP{A,B1}:0.485338987685;ZNF148:0.484568504979;HAND1,2:0.444370520835;MAZ:0.430417724667;GATA4:0.424060337464;ZNF384:0.415686968053;POU3F1..4:0.41402697327;NANOG{mouse}:0.413847175585;TBX4,5:0.397403622618;ESR1:0.393838292756;SMAD1..7,9:0.393387880326;ZNF423:0.39331617351;MYFfamily:0.38005750363;SOX17:0.376106171355;NR1H4:0.348315005396;CEBPA,B_DDIT3:0.345178555236;HLF:0.343201920892;MED-1{core}:0.340416982901;HOX{A5,B5}:0.333236333857;MTE{core}:0.324267360609;GZF1:0.301692826826;CDC5L:0.301322125022;PBX1:0.295352959128;HIC1:0.294004995289;NFATC1..3:0.286605506151;RFX1:0.271346935352;PAX1,9:0.264731125315;STAT2,4,6:0.256314372025;RXRA_VDR{dimer}:0.253060428761;SOX{8,9,10}:0.245889127578;EBF1:0.241204715915;ADNP_IRX_SIX_ZHX:0.237599259281;SP1:0.221195473082;STAT1,3:0.218516003715;ZBTB6:0.216679521041;PPARG:0.200094557222;CRX:0.188771640522;NFIL3:0.180498434742;JUN:0.169819019008;REST:0.166467162626;AHR_ARNT_ARNT2:0.154547276899;TOPORS:0.154387228766;NFE2L1:0.127806175218;POU6F1:0.119233372073;XCPE1{core}:0.11530076906;NFE2L2:0.109256079105;HSF1,2:0.0882852718157;BACH2:0.0874525714445;BPTF:0.0792995114562;NRF1:0.075391727636;SOX2:0.0695734727992;FOXM1:0.0677975658321;RBPJ:0.066969712776;HMX1:0.0666821912778;DMAP1_NCOR{1,2}_SMARC:0.0549839836195;CDX1,2,4:0.0528824108976;LEF1_TCF7_TCF7L1,2:0.0518814827019;NR5A1,2:0.0410601471077;TFDP1:0.0148081011051;DBP:0.0144364462913;SOX5:-0.00589313809055;RUNX1..3:-0.00730436260903;EP300:-0.0114443709677;PAX8:-0.0145176534922;HNF1A:-0.0160540026501;CUX2:-0.0231838456743;GFI1:-0.0367791795472;FOXO1,3,4:-0.0470417980422;MAFB:-0.0568941729171;PRRX1,2:-0.0594376543756;FOXQ1:-0.0665911848351;ZFP161:-0.0714943973549;FOS_FOS{B,L1}_JUN{B,D}:-0.0720774819177;NFE2:-0.0809903027864;TGIF1:-0.0844421831823;TEF:-0.110646756333;T:-0.110930509003;ESRRA:-0.127223107752;HOX{A6,A7,B6,B7}:-0.130381937835;EGR1..3:-0.143955518281;CREB1:-0.145146832411;NKX2-3_NKX2-5:-0.168051329463;NFKB1_REL_RELA:-0.173250896756;E2F1..5:-0.177683585697;FOXP1:-0.177959767816;ONECUT1,2:-0.18091979169;PDX1:-0.192169308887;HIF1A:-0.207420450935;IRF1,2:-0.210500939889;FOSL2:-0.224889276919;MYB:-0.24390967448;POU2F1..3:-0.25643677066;XBP1:-0.258034258567;RFX2..5_RFXANK_RFXAP:-0.27361445769;AIRE:-0.279007628554;ATF2:-0.28170118858;SNAI1..3:-0.298894457883;STAT5{A,B}:-0.321634344639;MTF1:-0.323278834046;FOX{F1,F2,J1}:-0.325134228002;ATF4:-0.331303900081;HNF4A_NR2F1,2:-0.344576018752;AR:-0.382976615025;PAX6:-0.399950853862;POU1F1:-0.40675367015;POU5F1:-0.419314548544;TLX2:-0.421435635906;IRF7:-0.428223439915;NKX3-2:-0.439016886089;PAX2:-0.44721247413;NANOG:-0.47749645609;HMGA1,2:-0.479026018799;SPI1:-0.486878611591;PITX1..3:-0.504726763144;ARID5B:-0.508600133302;ATF6:-0.51929172402;SPIB:-0.531471167123;NFY{A,B,C}:-0.554737837235;ELF1,2,4:-0.563447149192;FOX{D1,D2}:-0.578197465175;PAX4:-0.600773474598;BREu{core}:-0.607123405268;ZEB1:-0.607552222736;IKZF2:-0.616549096814;ALX1:-0.619093034983;OCT4_SOX2{dimer}:-0.621137628278;PAX3,7:-0.632349082914;NKX2-1,4:-0.651358610336;RORA:-0.655353691205;FOXA2:-0.658269669947;ETS1,2:-0.66768586594;HBP1_HMGB_SSRP1_UBTF:-0.691712283599;VSX1,2:-0.708172583561;SREBF1,2:-0.716762984774;FOXP3:-0.726436603363;GATA6:-0.731511227833;FOXN1:-0.840043934939;ATF5_CREB3:-0.862302982002;FOX{I1,J2}:-1.09365176531;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18851064258;ZBTB16:-1.21658069388;HOXA9_MEIS1:-1.42550162421
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11281-116I3;search_select_hide=table117:FF:11281-116I3
}}
}}

Latest revision as of 16:30, 3 June 2020

Name:Skeletal Muscle Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11083
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stage22 weeks old fetus
sexunknown
ageembryo 22week
cell typeskeletal muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1424
catalog numberCA150-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005609
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11083 CAGE DRX008452 DRR009324
Accession ID Hg19

Library idBAMCTSS
CNhs11083 DRZ000749 DRZ002134
Accession ID Hg38

Library idBAMCTSS
CNhs11083 DRZ012099 DRZ013484
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005609
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.GTAGAG sRNA-Seq DRX037062 DRR041428
Accession ID Hg19

Library idBAMCTSS
SRhi10005.GTAGAG DRZ007070


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.11
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.196
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.0401
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0.0768
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.111
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.124
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.393
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0768
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.573
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.165
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.186
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.249
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.111
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0401
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0401
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.196
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.111
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0401
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.353
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.157
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.199
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.111
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.111
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.171
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.438
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11083

Jaspar motifP-value
MA0002.20.0974
MA0003.10.156
MA0004.10.487
MA0006.10.441
MA0007.10.17
MA0009.10.0642
MA0014.10.537
MA0017.10.0958
MA0018.20.0553
MA0019.10.45
MA0024.10.255
MA0025.10.758
MA0027.10.217
MA0028.10.469
MA0029.10.467
MA0030.10.513
MA0031.10.0703
MA0035.20.167
MA0038.10.449
MA0039.20.127
MA0040.10.686
MA0041.10.777
MA0042.10.898
MA0043.10.208
MA0046.10.482
MA0047.20.0671
MA0048.10.932
MA0050.10.00358
MA0051.10.0665
MA0052.10.246
MA0055.10.134
MA0057.10.949
MA0058.10.653
MA0059.10.206
MA0060.17.20639e-4
MA0061.10.259
MA0062.20.00276
MA0065.20.234
MA0066.10.93
MA0067.10.00911
MA0068.10.0408
MA0069.10.276
MA0070.10.026
MA0071.10.965
MA0072.10.351
MA0073.10.861
MA0074.10.3
MA0076.10.598
MA0077.10.301
MA0078.10.765
MA0079.20.987
MA0080.21.64858e-11
MA0081.10.0167
MA0083.10.0277
MA0084.10.0657
MA0087.10.578
MA0088.10.0977
MA0090.10.0242
MA0091.11.88517e-4
MA0092.10.509
MA0093.10.511
MA0099.20.158
MA0100.10.659
MA0101.10.0161
MA0102.20.214
MA0103.10.0964
MA0104.20.651
MA0105.10.564
MA0106.10.153
MA0107.10.0589
MA0108.22.31564e-5
MA0111.10.205
MA0112.20.353
MA0113.10.576
MA0114.10.0342
MA0115.10.04
MA0116.10.281
MA0117.10.039
MA0119.10.677
MA0122.10.42
MA0124.10.377
MA0125.10.737
MA0131.10.394
MA0135.10.247
MA0136.11.14546e-9
MA0137.20.509
MA0138.20.932
MA0139.10.93
MA0140.10.00709
MA0141.10.863
MA0142.10.00376
MA0143.10.981
MA0144.10.191
MA0145.10.304
MA0146.10.191
MA0147.10.47
MA0148.10.0204
MA0149.10.123
MA0150.10.00259
MA0152.10.0185
MA0153.10.493
MA0154.10.465
MA0155.10.0339
MA0156.11.22632e-8
MA0157.10.0658
MA0159.10.866
MA0160.10.0105
MA0162.10.122
MA0163.10.245
MA0164.10.379
MA0258.10.476
MA0259.10.916



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11083

Novel motifP-value
10.286
100.0288
1000.917
1010.389
1020.789
1030.693
1040.168
1050.762
1060.261
1070.154
1080.735
1090.641
110.996
1100.263
1110.192
1120.273
1130.669
1140.205
1150.806
1160.112
1170.867
1180.163
1190.842
120.497
1200.29
1210.737
1220.0247
1230.00166
1240.247
1250.869
1260.441
1270.432
1280.579
1290.482
130.96
1300.0847
1310.883
1320.268
1330.522
1340.067
1350.648
1360.138
1370.044
1380.153
1390.86
140.508
1400.03
1410.0276
1420.78
1430.136
1440.66
1450.49
1460.481
1470.638
1480.313
1490.0493
150.131
1500.893
1510.784
1520.0501
1530.372
1540.18
1550.0481
1560.217
1570.98
1580.0128
1590.616
160.596
1600.765
1610.672
1620.0315
1630.176
1640.935
1650.526
1660.998
1670.0654
1680.836
1690.117
170.675
180.39
190.0807
20.159
200.383
210.337
220.335
230.565
240.363
250.193
260.611
270.553
280.0766
290.939
30.579
300.216
310.774
320.00808
330.829
340.541
350.519
360.163
370.31
380.269
390.111
40.595
400.343
410.011
420.518
430.512
440.745
450.793
460.823
470.659
480.761
490.314
50.231
500.375
510.708
520.667
530.364
540.91
550.225
560.717
570.404
580.132
590.249
60.812
600.332
610.811
620.233
630.946
640.914
650.696
660.554
670.835
680.428
690.903
70.348
700.92
710.141
720.555
730.0963
740.55
750.968
760.339
770.373
780.0338
790.00471
80.994
800.667
810.351
820.892
830.143
840.702
850.696
860.789
870.744
880.586
890.301
90.387
900.185
910.666
920.845
930.57
940.432
950.948
960.884
970.718
980.0937
990.00177



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11083


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)

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