FF:11336-117F4: Difference between revisions

Latest revision as of 17:53, 4 June 2020

Name:	Adipocyte - subcutaneous, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11371
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	adipose tissue
dev stage	41 years old adult
sex	female
age	41
cell type	adipocyte
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1375
catalog number	CA803sD-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005509

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11371		CAGE		DRX008102		DRR008974

Accession ID Hg19

Library id		BAM		CTSS
CNhs11371		DRZ000399		DRZ001784

Accession ID Hg38

Library id		BAM		CTSS
CNhs11371		DRZ011749		DRZ013134

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005509

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10015.GGCTAC		sRNA-Seq		DRX037254		DRR041620

Accession ID Hg19

Library id		BAM		CTSS
SRhi10015.GGCTAC		DRZ007262

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0407
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.388
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0.213
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0629
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.296
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.00864
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.583
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0385
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.389
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0681
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.584
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00951
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0146
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.52
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.355
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.934
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	-0.019
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.213
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.261
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.57
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.213
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.462
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11371

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.304
MA0003.1	MA0003.1	0.0571
MA0004.1	MA0004.1	0.51
MA0006.1	MA0006.1	0.719
MA0007.1	MA0007.1	0.0968
MA0009.1	MA0009.1	0.294
MA0014.1	MA0014.1	0.685
MA0017.1	MA0017.1	0.0888
MA0018.2	MA0018.2	1.20544e-6
MA0019.1	MA0019.1	0.325
MA0024.1	MA0024.1	4.08995e-4
MA0025.1	MA0025.1	8.27138e-4
MA0027.1	MA0027.1	0.456
MA0028.1	MA0028.1	0.105
MA0029.1	MA0029.1	0.571
MA0030.1	MA0030.1	0.178
MA0031.1	MA0031.1	0.929
MA0035.2	MA0035.2	0.93
MA0038.1	MA0038.1	0.013
MA0039.2	MA0039.2	0.173
MA0040.1	MA0040.1	0.584
MA0041.1	MA0041.1	0.321
MA0042.1	MA0042.1	0.774
MA0043.1	MA0043.1	8.64978e-6
MA0046.1	MA0046.1	0.385
MA0047.2	MA0047.2	0.305
MA0048.1	MA0048.1	0.996
MA0050.1	MA0050.1	0.00512
MA0051.1	MA0051.1	0.342
MA0052.1	MA0052.1	0.59
MA0055.1	MA0055.1	0.393
MA0057.1	MA0057.1	0.0812
MA0058.1	MA0058.1	0.538
MA0059.1	MA0059.1	0.024
MA0060.1	MA0060.1	5.22303e-6
MA0061.1	MA0061.1	0.83
MA0062.2	MA0062.2	3.69334e-4
MA0065.2	MA0065.2	0.00276
MA0066.1	MA0066.1	0.0385
MA0067.1	MA0067.1	0.0503
MA0068.1	MA0068.1	0.239
MA0069.1	MA0069.1	0.335
MA0070.1	MA0070.1	0.813
MA0071.1	MA0071.1	0.0803
MA0072.1	MA0072.1	0.636
MA0073.1	MA0073.1	0.793
MA0074.1	MA0074.1	0.626
MA0076.1	MA0076.1	0.0313
MA0077.1	MA0077.1	0.282
MA0078.1	MA0078.1	0.959
MA0079.2	MA0079.2	0.298
MA0080.2	MA0080.2	2.10195e-5
MA0081.1	MA0081.1	0.312
MA0083.1	MA0083.1	0.17
MA0084.1	MA0084.1	0.455
MA0087.1	MA0087.1	0.869
MA0088.1	MA0088.1	0.325
MA0090.1	MA0090.1	0.0597
MA0091.1	MA0091.1	0.00189
MA0092.1	MA0092.1	0.0425
MA0093.1	MA0093.1	0.601
MA0099.2	MA0099.2	0.00196
MA0100.1	MA0100.1	0.416
MA0101.1	MA0101.1	0.186
MA0102.2	MA0102.2	0.192
MA0103.1	MA0103.1	0.469
MA0104.2	MA0104.2	0.179
MA0105.1	MA0105.1	0.119
MA0106.1	MA0106.1	0.0239
MA0107.1	MA0107.1	0.285
MA0108.2	MA0108.2	0.0735
MA0111.1	MA0111.1	0.95
MA0112.2	MA0112.2	2.0665e-4
MA0113.1	MA0113.1	0.00672
MA0114.1	MA0114.1	0.0416
MA0115.1	MA0115.1	0.582
MA0116.1	MA0116.1	0.0227
MA0117.1	MA0117.1	0.509
MA0119.1	MA0119.1	0.02
MA0122.1	MA0122.1	0.95
MA0124.1	MA0124.1	0.0571
MA0125.1	MA0125.1	0.519
MA0131.1	MA0131.1	0.29
MA0135.1	MA0135.1	0.838
MA0136.1	MA0136.1	1.2235e-5
MA0137.2	MA0137.2	0.144
MA0138.2	MA0138.2	0.267
MA0139.1	MA0139.1	0.535
MA0140.1	MA0140.1	0.689
MA0141.1	MA0141.1	0.044
MA0142.1	MA0142.1	0.888
MA0143.1	MA0143.1	0.442
MA0144.1	MA0144.1	0.197
MA0145.1	MA0145.1	0.146
MA0146.1	MA0146.1	0.387
MA0147.1	MA0147.1	0.0647
MA0148.1	MA0148.1	0.141
MA0149.1	MA0149.1	0.279
MA0150.1	MA0150.1	0.41
MA0152.1	MA0152.1	0.211
MA0153.1	MA0153.1	0.112
MA0154.1	MA0154.1	0.0945
MA0155.1	MA0155.1	0.263
MA0156.1	MA0156.1	1.37835e-4
MA0157.1	MA0157.1	0.297
MA0159.1	MA0159.1	0.126
MA0160.1	MA0160.1	0.164
MA0162.1	MA0162.1	0.123
MA0163.1	MA0163.1	6.42947e-4
MA0164.1	MA0164.1	0.649
MA0258.1	MA0258.1	0.0335
MA0259.1	MA0259.1	0.406

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11371

Novel motif	Logo	P-value
1	1	0.137
10	10	0.488
100	100	0.749
101	101	0.745
102	102	0.4
103	103	0.0956
104	104	0.93
105	105	0.0947
106	106	0.0675
107	107	0.0608
108	108	0.482
109	109	0.285
11	11	0.121
110	110	0.195
111	111	0.324
112	112	0.0895
113	113	0.199
114	114	0.117
115	115	0.055
116	116	0.17
117	117	0.594
118	118	0.789
119	119	0.706
12	12	0.672
120	120	0.539
121	121	0.688
122	122	0.159
123	123	0.152
124	124	0.378
125	125	0.637
126	126	0.658
127	127	0.249
128	128	0.118
129	129	0.317
13	13	0.712
130	130	0.488
131	131	0.368
132	132	0.599
133	133	0.538
134	134	0.289
135	135	0.119
136	136	0.568
137	137	0.914
138	138	0.886
139	139	0.06
14	14	0.457
140	140	0.76
141	141	0.942
142	142	0.751
143	143	0.0932
144	144	0.274
145	145	0.33
146	146	0.362
147	147	0.302
148	148	0.141
149	149	0.04
15	15	0.31
150	150	0.509
151	151	0.313
152	152	0.229
153	153	0.272
154	154	0.676
155	155	0.142
156	156	0.423
157	157	0.557
158	158	0.134
159	159	0.243
16	16	0.125
160	160	0.0489
161	161	0.571
162	162	0.919
163	163	0.96
164	164	0.248
165	165	0.942
166	166	0.802
167	167	0.877
168	168	0.902
169	169	0.00948
17	17	0.129
18	18	0.0153
19	19	0.0118
2	2	0.263
20	20	0.319
21	21	0.0347
22	22	0.138
23	23	0.0833
24	24	0.159
25	25	0.897
26	26	0.259
27	27	0.106
28	28	0.176
29	29	0.358
3	3	0.312
30	30	0.455
31	31	0.392
32	32	0.0054
33	33	0.634
34	34	0.388
35	35	0.321
36	36	0.722
37	37	0.0899
38	38	0.543
39	39	0.163
4	4	0.633
40	40	0.689
41	41	0.612
42	42	0.776
43	43	0.119
44	44	0.502
45	45	0.532
46	46	0.142
47	47	0.343
48	48	0.263
49	49	0.237
5	5	0.238
50	50	0.451
51	51	0.401
52	52	0.369
53	53	0.81
54	54	0.381
55	55	0.613
56	56	0.556
57	57	0.28
58	58	0.455
59	59	0.0685
6	6	0.558
60	60	0.386
61	61	0.496
62	62	0.182
63	63	0.118
64	64	0.413
65	65	0.202
66	66	0.583
67	67	0.323
68	68	0.23
69	69	0.217
7	7	0.629
70	70	0.0201
71	71	0.0616
72	72	0.403
73	73	0.119
74	74	0.0963
75	75	0.148
76	76	0.776
77	77	0.0032
78	78	0.877
79	79	0.112
8	8	0.0326
80	80	0.713
81	81	0.306
82	82	0.0733
83	83	0.923
84	84	0.414
85	85	0.0691
86	86	0.754
87	87	0.127
88	88	0.457
89	89	0.0293
9	9	0.269
90	90	0.755
91	91	0.365
92	92	0.041
93	93	0.92
94	94	0.154
95	95	0.763
96	96	0.701
97	97	0.98
98	98	0.0706
99	99	0.0424

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11371

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000011 human subcutaneous adipocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002521 (subcutaneous fat cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001013 (adipose tissue)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002190 (subcutaneous adipose tissue)
0002072 (hypodermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000011 (human subcutaneous adipocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001013,UBERON:0002199,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003102,UBERON:0006598,UBERON:0002532,UBERON:0002190,UBERON:0002072,UBERON:0002416,UBERON:0006603
+|DRA_sample_Accession=CAGE@SAMD00005509
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000325,CL:0000004,CL:0000134,CL:0000255,CL:0000136,CL:0002521
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005509
+|accession_numbers=CAGE;DRX008102;DRR008974;DRZ000399;DRZ001784;DRZ011749;DRZ013134
+|accession_numbers_RNASeq=sRNA-Seq;DRX037254;DRR041620;DRZ007262
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001013,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002190,UBERON:0002072,UBERON:0002416
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002521
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000011
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.67!51.80!PRRX1;;chr8:25902876..25902936,-!p1@EBF2!1.59!37.90!EBF2;;chr2:19558373..19558392,-!p1@OSR1!1.53!88.44!OSR1;;chr11:47279504..47279563,+!p1@NR1H3!1.46!61.28!NR1H3;;chr2:239756739..239756755,+!p2@TWIST2!1.41!41.69!TWIST2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.40!24.01!HOXC5;;chr2:239756671..239756732,+!p1@TWIST2!1.39!73.28!TWIST2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.85!ZBED1;;chr2:119605214..119605230,-!p1@EN1!1.26!17.06!EN1;;chr3:12330560..12330579,+!p1@PPARG!1.22!17.69!PPARG;;chr3:126076242..126076257,-!p1@KLF15!1.20!18.32!KLF15;;chr17:59477233..59477263,+!p1@TBX2!1.17!42.33!TBX2;;chr6:34204921..34204939,+!p3@HMGA1!1.15!386.61!HMGA1;;chr11:65686732..65686756,+!p2@DRAP1!1.15!55.59!DRAP1;;chr12:54393880..54393962,+!p1@HOXC9!1.13!12.63!HOXC9;;chr4:174451370..174451387,-!p1@HAND2!1.09!11.37!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!1.08!30.95!TWIST1;;chr1:170632959..170632987,+!p4@PRRX1!1.08!12.00!PRRX1;;chr19:47523058..47523114,+!p1@NPAS1!1.07!10.74!NPAS1;;chr15:42749722..42749739,-!p2@ZFP106!1.02!17.06!ZFP106;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.74!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!1.00!15.79!DRAP1;;chr12:54402745..54402788,+!p1@HOXC8!0.99!8.84!HOXC8;;chr8:128748308..128748324,+!p2@MYC!0.98!240.69!MYC;;chr11:65687362..65687436,+!p3@DRAP1!0.98!40.43!DRAP1;;chr12:54380036..54380091,+!p4@HOXC10!0.96!8.21!HOXC10;;chr11:46299199..46299233,+!p1@CREB3L1!0.94!41.06!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.58!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!0.93!7.58!HAND2;;chr1:170633348..170633399,+!p2@PRRX1!0.92!10.11!PRRX1;;chr8:72756267..72756296,-!p4@MSC!0.91!10.74!MSC;;chr7:27224842..27224872,-!p1@HOXA11!0.90!6.95!HOXA11;;chr7:19157043..19157088,-!p2@TWIST1!0.89!17.69!TWIST1;;chr3:126076264..126076305,-!p2@KLF15!0.86!8.84!KLF15;;chr12:54378923..54378966,+!p1@HOXC10!0.86!6.32!HOXC10;;chr11:113930425..113930471,+!p1@ZBTB16!0.84!8.84!ZBTB16;;chr17:46688334..46688385,-!p1@HOXB7!0.84!8.84!HOXB7;;chr12:66218255..66218304,+!p3@HMGA2!0.83!16.42!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.83!10.11!CREB3L1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.83!5.69!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!0.83!5.69!HOXC6;;chr2:176994408..176994492,+!p1@HOXD8!0.83!5.69!HOXD8;;chr7:73038839..73038862,-!p1@MLXIPL!0.83!5.69!MLXIPL;;chr2:145275162..145275202,-!p2@ZEB2!0.81!34.74!ZEB2;;chr11:47279248..47279264,+!p3@NR1H3!0.81!6.32!NR1H3;;chr12:53614115..53614154,-!p1@RARG!0.80!30.95!RARG;;chr4:4861385..4861398,+!p1@MSX1!0.79!16.42!MSX1;;chr8:128747757..128747800,+!p7@MYC!0.78!6.95!MYC;;chr11:46299443..46299459,+!p4@CREB3L1!0.78!5.05!CREB3L1;;chr1:170632439..170632465,+!p11@PRRX1!0.78!5.05!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.78!5.05!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.78!5.05!PRRX1;;chr14:95236440..95236465,-!p1@GSC!0.78!5.05!GSC;;chr22:41721853..41721874,+!p6@ZC3H7B!0.78!5.05!ZC3H7B;;chr2:119604456..119604501,-!p2@EN1!0.78!5.05!EN1;;chr3:21792682..21792720,-!p1@ZNF385D!0.78!5.05!ZNF385D;;chr9:132427883..132427951,+!p2@PRRX2!0.78!5.05!PRRX2;;chr19:50432453..50432468,+!p1@ATF5!0.77!304.49!ATF5;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.11!SNAI2;;chr17:46675420..46675465,-!p3@HOXB6!0.77!5.69!HOXB6;;chr5:139487608..139487663,+!p3@PURA!0.76!10.74!PURA;;chr8:128750983..128751021,+!p11@MYC!0.76!6.95!MYC;;chr17:59477275..59477286,+!p3@TBX2!0.75!6.32!TBX2;;chr8:128747661..128747703,+!p6@MYC!0.74!6.32!MYC;;chr8:128750654..128750793,+!p3@MYC!0.73!19.58!MYC;;chr19:50435736..50435781,+!p3@ATF5!0.73!6.32!ATF5;;chr19:46801639..46801699,+!p1@HIF3A!0.73!4.42!HIF3A;;chr1:170632115..170632136,+!p9@PRRX1!0.73!4.42!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.73!4.42!KLF17;;chr12:10875548..10875563,-!p13@CSDA!0.73!4.42!CSDA;;chr12:54380404..54380433,+!p3@HOXC10!0.73!4.42!HOXC10;;chr22:19748231..19748317,+!p1@TBX1!0.73!4.42!TBX1;;chr3:12392991..12393030,+!p7@PPARG!0.73!4.42!PPARG;;chr21:47063625..47063658,+!p1@PCBP3!0.72!20.85!PCBP3;;chr1:158979792..158979814,+!p2@IFI16!0.71!44.22!IFI16;;chr5:158526917..158526932,-!p1@EBF1!0.71!11.37!EBF1;;chr22:38598086..38598105,+!p1@MAFF!0.70!48.64!MAFF;;chr11:65687243..65687276,+!p8@DRAP1!0.70!5.69!DRAP1;;chr3:21792585..21792625,-!p2@ZNF385D!0.69!4.42!ZNF385D;;chr3:12392932..12392962,+!p8@PPARG!0.68!3.79!PPARG;;chr3:21792790..21792824,-!p4@ZNF385D!0.68!3.79!ZNF385D;;chr7:27192185..27192209,-!p1@HOXA3!0.68!3.79!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.68!3.79!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!0.68!3.79!HOXA10;;chr17:46675586..46675600,-!p6@HOXB6!0.68!3.79!HOXB6;;chr3:12329358..12329393,+!p3@PPARG!0.67!10.11!PPARG;;chr17:17726907..17726958,-!p2@SREBF1!0.66!25.27!SREBF1;;chr12:66218598..66218645,+!p2@HMGA2!0.66!18.95!HMGA2;;chr12:10875351..10875422,-!p4@CSDA!0.66!7.58!CSDA;;chr6:85474299..85474324,-!p1@TBX18!0.66!6.95!TBX18;;chr11:113930291..113930339,+!p2@ZBTB16!0.66!6.32!ZBTB16;;chr11:8102846..8102892,+!p1@TUB!0.65!5.05!TUB;;chr20:48807548..48807572,+!p14@CEBPB!0.65!4.42!CEBPB;;chr5:174151553..174151610,+!p1@MSX2!0.62!5.69!MSX2;;chr9:132427972..132428056,+!p1@PRRX2!0.62!4.42!PRRX2;;chr10:31288398..31288455,-!p2@ZNF438!0.62!3.79!ZNF438;;chr10:119302508..119302559,+!p5@EMX2!0.62!3.16!EMX2;;chr10:119303078..119303169,+!p2@EMX2!0.62!3.16!EMX2;;chr12:54402729..54402743,+!p3@HOXC8!0.62!3.16!HOXC8;;chr7:27196267..27196311,-!p1@HOXA7!0.62!3.16!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!0.62!3.16!HOXA9;;chr2:19558327..19558334,-!p2@OSR1!0.62!3.16!OSR1;;chr2:45236540..45236577,-!p1@SIX2!0.62!3.16!SIX2;;chr1:170632137..170632172,+!p10@PRRX1!0.62!3.16!PRRX1;;chr20:48808672..48808680,+!p26@CEBPB!0.62!3.16!CEBPB;;chr16:86612320..86612394,+!p1@FOXL1!0.62!3.16!FOXL1;;chr17:46132044..46132080,+!p4@NFE2L1!0.62!3.16!NFE2L1;;chr17:46687935..46687950,-!p3@HOXB7!0.62!3.16!HOXB7;;chrX:106960285..106960299,-!p1@TSC22D3!0.61!100.44!TSC22D3;;chr8:128750555..128750609,+!p5@MYC!0.61!6.95!MYC;;chr12:10875768..10875808,-!p3@CSDA!0.61!5.05!CSDA;;chr1:158985493..158985535,+!p4@IFI16!0.61!5.05!IFI16;;chr2:145282041..145282092,-!p8@ZEB2!0.61!5.05!ZEB2;;chr8:49833978..49833996,-!p1@SNAI2!0.60!75.17!SNAI2;;chr5:92918919..92918942,+!p1@NR2F1!0.60!15.79!NR2F1;;chrX:106960180..106960197,-!p2@TSC22D3!0.60!13.27!TSC22D3;;chr2:27357446..27357475,-!p2@PREB!0.60!12.00!PREB;;chr10:64576105..64576133,-!p1@EGR2!0.60!6.95!EGR2;;chr15:96874145..96874166,+!p7@NR2F2!0.60!6.32!NR2F2;;chr1:221053049..221053075,+!p3@HLX!0.60!5.69!HLX;;chr6:34204973..34204990,+!p4@HMGA1!0.59!46.75!HMGA1;;chr3:12329397..12329433,+!p2@PPARG!0.59!7.58!PPARG;;chr20:48807456..48807475,+!p3@CEBPB!0.59!6.32!CEBPB;;chr11:8102819..8102845,+!p3@TUB!0.59!3.79!TUB;;chr1:158979872..158979898,+!p3@IFI16!0.58!10.11!IFI16;;chr7:44143978..44143989,+!p2@AEBP1!0.58!5.69!AEBP1;;chr12:66218212..66218244,+!p5@HMGA2!0.58!4.42!HMGA2;;chr8:72756213..72756243,-!p5@MSC!0.58!3.79!MSC;;chr19:33793430..33793447,-!p1@CEBPA!0.57!13.90!CEBPA;;chr15:66994561..66994597,+!p2@SMAD6!0.57!7.58!SMAD6;;chr20:48807615..48807644,+!p6@CEBPB!0.57!5.05!CEBPB;;chr1:23696348..23696363,-!p4@ZNF436!0.57!3.16!ZNF436;;chr17:46622440..46622477,-!p5@HOXB2!0.57!3.16!HOXB2;;chr10:77161504..77161530,-!p1@ZNF503!0.56!44.22!ZNF503;;chr2:242576431..242576458,-!p3@THAP4!0.56!7.58!THAP4;;chr14:62162258..62162269,+!p2@HIF1A!0.55!30.95!HIF1A;;chr7:150946015..150946070,-!p3@SMARCD3!0.55!6.32!SMARCD3;;chr5:3595961..3595975,+!p3@IRX1!0.55!2.53!IRX1;;chr8:128747846..128747860,+!p15@MYC!0.55!2.53!MYC;;chr2:28635317..28635334,+!p10@FOSL2!0.55!2.53!FOSL2;;chr17:46675469..46675481,-!p4@HOXB6!0.55!2.53!HOXB6;;chr17:46675558..46675577,-!p2@HOXB6!0.55!2.53!HOXB6;;chr17:48072574..48072597,-!p1@DLX3!0.55!2.53!DLX3;;chr11:47279568..47279577,+!p8@NR1H3!0.55!2.53!NR1H3;;chr12:54379029..54379057,+!p2@HOXC10!0.55!2.53!HOXC10;;chr12:54380112..54380126,+!p5@HOXC10!0.55!2.53!HOXC10;;chr12:54422245..54422263,+!p7@HOXC6!0.55!2.53!HOXC6;;chr1:170632028..170632043,+!p20@PRRX1!0.55!2.53!PRRX1;;chr1:170632583..170632590,+!p26@PRRX1!0.55!2.53!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.55!2.53!PRRX1;;chr20:48807351..48807384,+!p1@CEBPB!0.54!322.81!CEBPB;;chr18:3449586..3449617,+!p8@TGIF1!0.54!4.42!TGIF1;;chr11:65687158..65687216,+!p4@DRAP1!0.53!17.06!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.53!11.37!FOSL1;;chr17:1959369..1959388,+!p2@HIC1!0.53!7.58!HIC1;;chr20:39946400..39946423,-!p3@ZHX3!0.53!5.05!ZHX3;;chr16:54964740..54964789,+!p1@IRX5!0.53!3.79!IRX5;;chr8:145535378..145535420,+!p4@HSF1!0.53!3.16!HSF1;;chr1:23696448..23696453,-!p5@ZNF436!0.53!3.16!ZNF436;;chr12:96588368..96588394,+!p3@ELK3!0.52!7.58!ELK3;;chr15:57511609..57511651,+!p2@TCF12!0.52!4.42!TCF12;;chr10:77161133..77161176,-!p3@ZNF503!0.51!5.69!ZNF503;;chr2:200323414..200323455,-!p1@SATB2!0.51!5.69!SATB2;;chr12:66218183..66218209,+!p4@HMGA2!0.51!5.05!HMGA2;;chr17:46622114..46622138,-!p4@HOXB2!0.51!3.79!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!0.51!3.79!PITX1;;chr5:92918956..92918969,+!p4@NR2F1!0.51!2.53!NR2F1;;chr7:64467057..64467078,-!p1@ZNF117!0.50!53.70!ZNF117;;chr20:39317868..39317884,-!p1@MAFB!0.50!34.11!MAFB;;chr14:21566731..21566836,-!p1@ZNF219!0.50!30.32!ZNF219;;chr15:96874244..96874259,+!p5@NR2F2!0.50!6.32!NR2F2;;chr14:21566540..21566580,-!p2@ZNF219!0.50!3.16!ZNF219;;chr19:57946684..57946723,+!p1@ZNF749!0.49!30.32!ZNF749;;chr7:14029283..14029311,-!p1@ETV1!0.49!14.53!ETV1;;chr20:42543441..42543497,+!p1@TOX2!0.49!12.00!TOX2;;chr6:1389789..1389821,+!p1@FOXF2!0.49!3.16!FOXF2;;chr17:46687959..46688007,-!p2@HOXB7!0.49!3.16!HOXB7;;chrX:107019163..107019179,-!p7@TSC22D3!0.49!2.53!TSC22D3;;chr1:8938709..8938720,-!p3@ENO1!0.48!133.92!ENO1;;chr12:66218836..66218888,+!p1@HMGA2!0.48!25.27!HMGA2;;chr11:65686776..65686787,+!p9@DRAP1!0.48!2.53!DRAP1;;chr19:13106214..13106382,+!p1@NFIX!0.47!61.28!NFIX;;chr10:77161533..77161546,-!p2@ZNF503!0.47!10.11!ZNF503;;chr13:41635067..41635100,-!p5@ELF1!0.47!4.42!ELF1;;chr19:45261550..45261641,+!p6@BCL3!0.47!3.79!BCL3;;chr8:128752771..128752843,+!p9@MYC!0.47!3.16!MYC;;chr14:75894714..75894733,+!p1@J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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002521;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001013;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11371.11336-117F4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11371.11336-117F4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11371.11336-117F4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11371.11336-117F4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11371.11336-117F4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11336-117F4
 |is_a=EFO:0002091;;FF:0000011
 |is_obsolete=
+|library_id=CNhs11371
+|library_id_phase_based=2:CNhs11371
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11336
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GGCTAC.11336
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11336
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GGCTAC.11336
 |name=Adipocyte - subcutaneous, donor2
 |namespace=FANTOM5
@@ Line 44: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11371,LSID771,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10015,,,
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 |rna_box=117
 |rna_catalog_number=CA803sD-R10a
@@ Line 58: / Line 82: @@
 |rna_tube_id=117F4
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10015.GGCTAC
 |sample_age=41
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 80: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11336-117F4;search_select_hide=table117:FF:11336-117F4
 }}

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FF:11336-117F4: Difference between revisions

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Latest revision as of 17:53, 4 June 2020

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