FF:11341-117F9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004960 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004960 | ||
|accession_numbers=CAGE;DRX008221;DRR009093;DRZ000518;DRZ001903;DRZ011868;DRZ013253 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037021;DRR041387;DRZ007029 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.55!463.57!SOX18;;chr8:55370487..55370503,+!p1@SOX17!2.20!155.72!SOX17;;chr21:39870339..39870443,-!p1@ERG!2.17!145.81!ERG;;chr8:10588010..10588030,-!p1@SOX7!2.01!102.34!SOX7;;chr22:19748231..19748317,+!p1@TBX1!1.82!65.48!TBX1;;chr17:6926362..6926377,+!p1@BCL6B!1.73!53.10!BCL6B;;chr1:6479968..6479986,-!p1@HES2!1.69!48.42!HES2;;chr12:96588368..96588394,+!p3@ELK3!1.66!116.65!ELK3;;chr18:53068911..53068935,-!p4@TCF4!1.60!43.19!TCF4;;chr19:13213511..13213545,-!p2@LYL1!1.57!39.62!LYL1;;chr6:34204921..34204939,+!p3@HMGA1!1.56!1007.48!HMGA1;;chr6:126070769..126070801,+!p1@HEY2!1.54!38.52!HEY2;;chr17:46655672..46655697,-!p3@HOXB4!1.46!27.79!HOXB4;;chr16:86600426..86600441,+!p1@FOXC2!1.33!49.80!FOXC2;;chr19:13213399..13213414,-!p6@LYL1!1.26!17.06!LYL1;;chr10:94449703..94449718,+!p1@HHEX!1.25!64.10!HHEX;;chr19:13213662..13213686,-!p1@LYL1!1.23!23.66!LYL1;;chr18:19749541..19749557,+!p1@GATA6!1.16!42.64!GATA6;;chr3:128206762..128206781,-!p2@GATA2!1.10!72.63!GATA2;;chr17:46655704..46655718,-!p2@HOXB4!1.08!16.51!HOXB4;;chr6:10412600..10412637,-!p1@TFAP2A!1.05!17.33!TFAP2A;;chr3:168864315..168864339,-!p2@MECOM!1.05!17.06!MECOM;;chr2:177053386..177053402,+!p1@HOXD1!1.05!10.18!HOXD1;;chr11:65429891..65429915,-!p7@RELA!1.03!9.63!RELA;;chr5:92918919..92918942,+!p1@NR2F1!1.02!42.92!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.59!HMGA2;;chr20:42543506..42543549,+!p2@TOX2!1.00!22.28!TOX2;;chr20:62680671..62680679,-!p2@SOX18!0.99!8.80!SOX18;;chr17:41622925..41622976,-!p3@ETV4!0.98!12.93!ETV4;;chr3:169381420..169381535,-!p1@MECOM!0.97!9.90!MECOM;;chr20:42543441..42543497,+!p1@TOX2!0.95!36.59!TOX2;;chr20:6748325..6748352,+!p1@BMP2!0.95!11.55!BMP2;;chr3:25469815..25469866,+!p3@RARB!0.95!7.98!RARB;;chr19:13213555..13213568,-!p5@LYL1!0.94!7.70!LYL1;;chr6:34204672..34204692,+!p1@HMGA1!0.93!882.30!HMGA1;;chr1:47695003..47695042,-!p2@TAL1!0.91!7.15!TAL1;;chr18:22932080..22932170,-!p1@ZNF521!0.90!30.54!ZNF521;;chrY:21906594..21906622,-!p1@KDM5D!0.90!6.88!KDM5D;;chr5:92918894..92918912,+!p2@NR2F1!0.89!23.11!NR2F1;;chr1:221052776..221052799,+!p1@HLX!0.88!12.11!HLX;;chr9:16705069..16705086,-!p3@BNC2!0.88!6.60!BNC2;;chr17:41623692..41623715,-!p1@ETV4!0.87!28.61!ETV4;;chr13:72441315..72441454,-!p1@DACH1!0.87!13.21!DACH1;;chr15:83953397..83953425,-!p1@BNC1!0.87!7.43!BNC1;;chr12:66218183..66218209,+!p4@HMGA2!0.86!12.38!HMGA2;;chr18:53068982..53068993,-!p20@TCF4!0.86!6.33!TCF4;;chr19:13213465..13213478,-!p7@LYL1!0.86!6.33!LYL1;;chr19:46801639..46801699,+!p1@HIF3A!0.85!6.05!HIF3A;;chr8:60031619..60031676,-!p1@TOX!0.83!12.93!TOX;;chr12:66218212..66218244,+!p5@HMGA2!0.83!8.53!HMGA2;;chr1:200008734..200008765,+!p2@NR5A2!0.83!5.78!NR5A2;;chr6:21597765..21597779,+!p2@SOX4!0.81!47.87!SOX4;;chr4:57522598..57522664,-!p3@HOPX!0.81!5.50!HOPX;;chr14:38064429..38064486,-!p1@FOXA1!0.81!5.50!FOXA1;;chr9:14314131..14314147,-!p2@NFIB!0.80!32.19!NFIB;;chr1:158979792..158979814,+!p2@IFI16!0.79!53.37!IFI16;;chr3:170076314..170076334,+!p2@SKIL!0.79!6.88!SKIL;;chr10:94449675..94449694,+!p2@HHEX!0.78!14.58!HHEX;;chr18:19749386..19749404,+!p2@GATA6!0.78!7.43!GATA6;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.33!TFAP2A;;chr1:209979467..209979494,-!p1@IRF6!0.78!5.78!IRF6;;chr19:1652555..1652568,-!p2@TCF3!0.77!21.73!TCF3;;chr9:14082760..14082775,-!p6@NFIB!0.77!8.53!NFIB;;chr19:49864746..49864780,-!p2@TEAD2!0.77!6.88!TEAD2;;chr6:28321971..28321995,-!p1@ZNF323!0.77!4.95!ZNF323;;chr4:57522166..57522260,-!p2@HOPX!0.76!5.50!HOPX;;chr5:92918956..92918969,+!p4@NR2F1!0.76!5.23!NR2F1;;chr2:46524537..46524553,+!p1@EPAS1!0.75!505.12!EPAS1;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!37.14!ZMAT3;;chr7:26191809..26191890,+!p1@NFE2L3!0.74!24.49!NFE2L3;;chr5:92918768..92918783,+!p8@NR2F1!0.73!4.40!NR2F1;;chr7:139741594..139741615,-!p5@PARP12!0.73!4.40!PARP12;;chr22:19746969..19746987,+!p2@TBX1!0.73!4.40!TBX1;;chr19:49865646..49865718,-!p1@TEAD2!0.72!41.27!TEAD2;;chr6:21593973..21593988,+!p1@SOX4!0.71!168.92!SOX4;;chr17:1958388..1958404,+!p1@HIC1!0.71!29.71!HIC1;;chr12:124873852..124873881,-!p3@NCOR2!0.71!28.06!NCOR2;;chr9:14083467..14083483,-!p4@NFIB!0.71!11.00!NFIB;;chr2:46602901..46602926,+!p7@EPAS1!0.71!5.78!EPAS1;;chr3:168865250..168865272,-!p5@MECOM!0.71!4.13!MECOM;;chr3:25470156..25470227,+!p2@RARB!0.71!4.13!RARB;;chr5:172662197..172662216,-!p1@NKX2-5!0.71!4.13!NKX2-5;;chr8:55370720..55370733,+!p2@SOX17!0.71!4.13!SOX17;;chr17:46675558..46675577,-!p2@HOXB6!0.71!4.13!HOXB6;;chr11:65430554..65430579,-!p3@RELA!0.70!11.28!RELA;;chr8:128748308..128748324,+!p2@MYC!0.69!122.98!MYC;;chr2:85360499..85360598,+!p1@TCF7L1!0.69!24.49!TCF7L1;;chr1:935467..935484,-!p1@HES4!0.69!19.53!HES4;;chr18:19749517..19749531,+!p3@GATA6!0.69!7.43!GATA6;;chr18:53177984..53178004,-!p17@TCF4!0.69!3.85!TCF4;;chr6:126070748..126070768,+!p2@HEY2!0.69!3.85!HEY2;;chr7:27153454..27153469,-!p2@HOXA3!0.69!3.85!HOXA3;;chr10:31288370..31288393,-!p3@ZNF438!0.69!3.85!ZNF438;;chr8:80679993..80680011,-!p1@HEY1!0.68!5.78!HEY1;;chr2:46602879..46602899,+!p8@EPAS1!0.68!4.68!EPAS1;;chr22:38597987..38598021,+!p2@MAFF!0.67!25.86!MAFF;;chr12:10875658..10875708,-!p2@CSDA!0.67!9.35!CSDA;;chr17:41623009..41623053,-!p4@ETV4!0.67!6.33!ETV4;;chr10:31288398..31288455,-!p2@ZNF438!0.67!4.40!ZNF438;;chr20:42295745..42295765,+!p1@MYBL2!0.66!68.50!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.49!MYBL2;;chr1:221052840..221052875,+!p4@HLX!0.66!4.40!HLX;;chr20:42602000..42602034,+!p5@TOX2!0.66!3.58!TOX2;;chr16:86600870..86600921,+!p2@FOXC2!0.66!3.58!FOXC2;;chr16:86601088..86601105,+!p5@FOXC2!0.66!3.58!FOXC2;;chr12:66218836..66218888,+!p1@HMGA2!0.65!38.24!HMGA2;;chr19:56152332..56152347,+!p4@ZNF580!0.65!8.80!ZNF580;;chr20:50721803..50721857,-!p2@ZFP64!0.65!5.78!ZFP64;;chr6:85473156..85473210,-!p2@TBX18!0.65!4.40!TBX18;;chr17:3571863..3571881,-!p1@TAX1BP3!0.64!282.55!TAX1BP3;;chr12:66218598..66218645,+!p2@HMGA2!0.64!18.16!HMGA2;;chr1:8934931..8934947,-!p4@ENO1!0.64!12.66!ENO1;;chr17:46655730..46655791,-!p1@HOXB4!0.64!9.35!HOXB4;;chr1:935496..935509,-!p3@HES4!0.64!5.50!HES4;;chr9:14314566..14314618,-!p1@NFIB!0.63!46.22!NFIB;;chr12:3068544..3068597,+!p1@TEAD4!0.63!23.11!TEAD4;;chr15:90544532..90544563,+!p1@ZNF710!0.63!7.15!ZNF710;;chr19:53496768..53496799,-!p1@ZNF702P!0.63!5.50!ZNF702P;;chr17:41622834..41622883,-!p6@ETV4!0.63!4.13!ETV4;;chr17:6926381..6926392,+!p2@BCL6B!0.63!3.30!BCL6B;;chr13:72441506..72441562,-!p3@DACH1!0.63!3.30!DACH1;;chr14:74256787..74256858,-!p6@C14orf43!0.63!3.30!C14orf43;;chr5:92919452..92919496,+!p11@NR2F1!0.63!3.30!NR2F1;;chr7:115670804..115670825,-!p1@TFEC!0.63!3.30!TFEC;;chr13:41240717..41240735,-!p2@FOXO1!0.62!25.31!FOXO1;;chr20:48599506..48599526,+!p1@SNAI1!0.62!24.21!SNAI1;;chr5:92918860..92918871,+!p10@NR2F1!0.62!3.58!NR2F1;;chr1:23885981..23886002,-!p1@ID3!0.61!645.98!ID3;;chr1:205601064..205601087,-!p4@ELK4!0.61!6.60!ELK4;;chr9:14313893..14313908,-!p7@NFIB!0.61!4.68!NFIB;;chr12:124873357..124873401,-!p1@NCOR2!0.60!41.82!NCOR2;;chr13:79177703..79177729,-!p2@POU4F1!0.60!3.03!POU4F1;;chr7:139741849..139741879,-!p12@PARP12!0.60!3.03!PARP12;;chr7:27183291..27183324,-!p1@HOXA5!0.60!3.03!HOXA5;;chr19:13213496..13213501,-!p10@LYL1!0.60!3.03!LYL1;;chr3:25470062..25470084,+!p4@RARB!0.60!3.03!RARB;;chr1:200011711..200011752,+!p3@NR5A2!0.60!3.03!NR5A2;;chr8:106330656..106330684,+!p1@ZFPM2!0.59!8.80!ZFPM2;;chr1:8926369..8926385,-!p12@ENO1!0.59!4.13!ENO1;;chr17:7590797..7590815,-!p1@TP53!0.58!149.11!TP53;;chr11:47236584..47236679,+!p1@DDB2!0.58!37.97!DDB2;;chr11:128563948..128564003,+!p1@FLI1!0.57!40.72!FLI1;;chr15:57211660..57211687,+!p6@TCF12!0.57!4.95!TCF12;;chr16:86601052..86601066,+!p4@FOXC2!0.57!2.75!FOXC2;;chr18:53068893..53068902,-!p28@TCF4!0.57!2.75!TCF4;;chr13:72441074..72441172,-!p2@DACH1!0.57!2.75!DACH1;;chr5:92918789..92918800,+!p12@NR2F1!0.57!2.75!NR2F1;;chr7:27170359..27170381,-!p1@HOXA4!0.57!2.75!HOXA4;;chr8:93115584..93115642,-!p5@RUNX1T1!0.57!2.75!RUNX1T1;;chr2:237076992..237077008,-!p2@GBX2!0.57!2.75!GBX2;;chr11:65667846..65667868,-!p1@FOSL1!0.56!86.94!FOSL1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.56!13.21!LRRFIP2;;chr3:141087393..141087426,+!p3@ZBTB38!0.56!12.66!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.56!4.40!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.56!4.40!HOXB2;;chr8:145535860..145535895,+!p2@HSF1!0.56!3.85!HSF1;;chr1:151032860..151032918,+!p1@MLLT11!0.55!38.24!MLLT11;;chr17:4890695..4890773,-!p2@CAMTA2!0.55!9.63!CAMTA2;;chr9:14314522..14314556,-!p3@NFIB!0.55!6.88!NFIB;;chr2:74730430..74730451,-!p1@LBX2!0.55!4.68!LBX2;;chr1:214161272..214161322,+!p1@PROX1!0.55!3.85!PROX1;;chr11:65667884..65667895,-!p2@FOSL1!0.54!11.83!FOSL1;;chr17:38498594..38498661,+!p2@RARA!0.54!9.90!RARA;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.80!MAZ;;chr5:92920456..92920488,+!p9@NR2F1!0.54!3.03!NR2F1;;chr5:92919375..92919438,+!p6@NR2F1!0.54!2.75!NR2F1;;chr12:3068196..3068232,+!p9@TEAD4!0.54!2.75!TEAD4;;chr12:66357214..66357233,+!p13@HMGA2!0.54!2.48!HMGA2;;chr16:30406423..30406447,+!p4@ZNF48!0.54!2.48!ZNF48;;chr1:47696918..47696935,-!p6@TAL1!0.54!2.48!TAL1;;chr7:27196267..27196311,-!p1@HOXA7!0.54!2.48!HOXA7;;chr6:34204973..34204990,+!p4@HMGA1!0.53!40.44!HMGA1;;chr11:65686732..65686756,+!p2@DRAP1!0.53!12.38!DRAP1;;chr16:2059754..2059777,-!p2@ZNF598!0.53!10.18!ZNF598;;chr12:3068501..3068515,+!p4@TEAD4!0.53!4.68!TEAD4;;chr1:156470494..156470505,-!p3@MEF2D!0.53!3.85!MEF2D;;chr17:46622440..46622477,-!p5@HOXB2!0.53!2.75!HOXB2;;chr12:11802753..11802834,+!p2@ETV6!0.52!14.31!ETV6;;chr7:149470641..149470694,-!p1@ZNF467!0.52!13.21!ZNF467;;chr18:51750414..51750449,-!p5@MBD2!0.52!5.23!MBD2;;chr6:21597370..21597408,+!p5@SOX4!0.52!4.13!SOX4;;chr4:2263809..2263854,-!p1@MXD4!0.51!113.90!MXD4;;chr6:130339710..130339745,+!p1@L3MBTL3!0.51!22.83!L3MBTL3;;chr19:1592714..1592762,-!p1@MBD3!0.51!21.73!MBD3;;chr16:1429627..1429662,-!p2@UNKL!0.51!7.98!UNKL;;chr4:146402843..146402864,+!p3@SMAD1!0.51!5.23!SMAD1;;chr12:66218378..66218401,+!p6@HMGA2!0.51!3.85!HMGA2;;chr17:41623667..41623682,-!p8@ETV4!0.51!2.48!ETV4;;chr17:41623716..41623727,-!p12@ETV4!0.51!2.20!ETV4;;chr3:168864383..16886440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| |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.55!463.57!SOX18;;chr8:55370487..55370503,+!p1@SOX17!2.20!155.72!SOX17;;chr21:39870339..39870443,-!p1@ERG!2.17!145.81!ERG;;chr8:10588010..10588030,-!p1@SOX7!2.01!102.34!SOX7;;chr22:19748231..19748317,+!p1@TBX1!1.82!65.48!TBX1;;chr17:6926362..6926377,+!p1@BCL6B!1.73!53.10!BCL6B;;chr1:6479968..6479986,-!p1@HES2!1.69!48.42!HES2;;chr12:96588368..96588394,+!p3@ELK3!1.66!116.65!ELK3;;chr18:53068911..53068935,-!p4@TCF4!1.60!43.19!TCF4;;chr19:13213511..13213545,-!p2@LYL1!1.57!39.62!LYL1;;chr6:34204921..34204939,+!p3@HMGA1!1.56!1007.48!HMGA1;;chr6:126070769..126070801,+!p1@HEY2!1.54!38.52!HEY2;;chr17:46655672..46655697,-!p3@HOXB4!1.46!27.79!HOXB4;;chr16:86600426..86600441,+!p1@FOXC2!1.33!49.80!FOXC2;;chr19:13213399..13213414,-!p6@LYL1!1.26!17.06!LYL1;;chr10:94449703..94449718,+!p1@HHEX!1.25!64.10!HHEX;;chr19:13213662..13213686,-!p1@LYL1!1.23!23.66!LYL1;;chr18:19749541..19749557,+!p1@GATA6!1.16!42.64!GATA6;;chr3:128206762..128206781,-!p2@GATA2!1.10!72.63!GATA2;;chr17:46655704..46655718,-!p2@HOXB4!1.08!16.51!HOXB4;;chr6:10412600..10412637,-!p1@TFAP2A!1.05!17.33!TFAP2A;;chr3:168864315..168864339,-!p2@MECOM!1.05!17.06!MECOM;;chr2:177053386..177053402,+!p1@HOXD1!1.05!10.18!HOXD1;;chr11:65429891..65429915,-!p7@RELA!1.03!9.63!RELA;;chr5:92918919..92918942,+!p1@NR2F1!1.02!42.92!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.59!HMGA2;;chr20:42543506..42543549,+!p2@TOX2!1.00!22.28!TOX2;;chr20:62680671..62680679,-!p2@SOX18!0.99!8.80!SOX18;;chr17:41622925..41622976,-!p3@ETV4!0.98!12.93!ETV4;;chr3:169381420..169381535,-!p1@MECOM!0.97!9.90!MECOM;;chr20:42543441..42543497,+!p1@TOX2!0.95!36.59!TOX2;;chr20:6748325..6748352,+!p1@BMP2!0.95!11.55!BMP2;;chr3:25469815..25469866,+!p3@RARB!0.95!7.98!RARB;;chr19:13213555..13213568,-!p5@LYL1!0.94!7.70!LYL1;;chr6:34204672..34204692,+!p1@HMGA1!0.93!882.30!HMGA1;;chr1:47695003..47695042,-!p2@TAL1!0.91!7.15!TAL1;;chr18:22932080..22932170,-!p1@ZNF521!0.90!30.54!ZNF521;;chrY:21906594..21906622,-!p1@KDM5D!0.90!6.88!KDM5D;;chr5:92918894..92918912,+!p2@NR2F1!0.89!23.11!NR2F1;;chr1:221052776..221052799,+!p1@HLX!0.88!12.11!HLX;;chr9:16705069..16705086,-!p3@BNC2!0.88!6.60!BNC2;;chr17:41623692..41623715,-!p1@ETV4!0.87!28.61!ETV4;;chr13:72441315..72441454,-!p1@DACH1!0.87!13.21!DACH1;;chr15:83953397..83953425,-!p1@BNC1!0.87!7.43!BNC1;;chr12:66218183..66218209,+!p4@HMGA2!0.86!12.38!HMGA2;;chr18:53068982..53068993,-!p20@TCF4!0.86!6.33!TCF4;;chr19:13213465..13213478,-!p7@LYL1!0.86!6.33!LYL1;;chr19:46801639..46801699,+!p1@HIF3A!0.85!6.05!HIF3A;;chr8:60031619..60031676,-!p1@TOX!0.83!12.93!TOX;;chr12:66218212..66218244,+!p5@HMGA2!0.83!8.53!HMGA2;;chr1:200008734..200008765,+!p2@NR5A2!0.83!5.78!NR5A2;;chr6:21597765..21597779,+!p2@SOX4!0.81!47.87!SOX4;;chr4:57522598..57522664,-!p3@HOPX!0.81!5.50!HOPX;;chr14:38064429..38064486,-!p1@FOXA1!0.81!5.50!FOXA1;;chr9:14314131..14314147,-!p2@NFIB!0.80!32.19!NFIB;;chr1:158979792..158979814,+!p2@IFI16!0.79!53.37!IFI16;;chr3:170076314..170076334,+!p2@SKIL!0.79!6.88!SKIL;;chr10:94449675..94449694,+!p2@HHEX!0.78!14.58!HHEX;;chr18:19749386..19749404,+!p2@GATA6!0.78!7.43!GATA6;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.33!TFAP2A;;chr1:209979467..209979494,-!p1@IRF6!0.78!5.78!IRF6;;chr19:1652555..1652568,-!p2@TCF3!0.77!21.73!TCF3;;chr9:14082760..14082775,-!p6@NFIB!0.77!8.53!NFIB;;chr19:49864746..49864780,-!p2@TEAD2!0.77!6.88!TEAD2;;chr6:28321971..28321995,-!p1@ZNF323!0.77!4.95!ZNF323;;chr4:57522166..57522260,-!p2@HOPX!0.76!5.50!HOPX;;chr5:92918956..92918969,+!p4@NR2F1!0.76!5.23!NR2F1;;chr2:46524537..46524553,+!p1@EPAS1!0.75!505.12!EPAS1;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!37.14!ZMAT3;;chr7:26191809..26191890,+!p1@NFE2L3!0.74!24.49!NFE2L3;;chr5:92918768..92918783,+!p8@NR2F1!0.73!4.40!NR2F1;;chr7:139741594..139741615,-!p5@PARP12!0.73!4.40!PARP12;;chr22:19746969..19746987,+!p2@TBX1!0.73!4.40!TBX1;;chr19:49865646..49865718,-!p1@TEAD2!0.72!41.27!TEAD2;;chr6:21593973..21593988,+!p1@SOX4!0.71!168.92!SOX4;;chr17:1958388..1958404,+!p1@HIC1!0.71!29.71!HIC1;;chr12:124873852..124873881,-!p3@NCOR2!0.71!28.06!NCOR2;;chr9:14083467..14083483,-!p4@NFIB!0.71!11.00!NFIB;;chr2:46602901..46602926,+!p7@EPAS1!0.71!5.78!EPAS1;;chr3:168865250..168865272,-!p5@MECOM!0.71!4.13!MECOM;;chr3:25470156..25470227,+!p2@RARB!0.71!4.13!RARB;;chr5:172662197..172662216,-!p1@NKX2-5!0.71!4.13!NKX2-5;;chr8:55370720..55370733,+!p2@SOX17!0.71!4.13!SOX17;;chr17:46675558..46675577,-!p2@HOXB6!0.71!4.13!HOXB6;;chr11:65430554..65430579,-!p3@RELA!0.70!11.28!RELA;;chr8:128748308..128748324,+!p2@MYC!0.69!122.98!MYC;;chr2:85360499..85360598,+!p1@TCF7L1!0.69!24.49!TCF7L1;;chr1:935467..935484,-!p1@HES4!0.69!19.53!HES4;;chr18:19749517..19749531,+!p3@GATA6!0.69!7.43!GATA6;;chr18:53177984..53178004,-!p17@TCF4!0.69!3.85!TCF4;;chr6:126070748..126070768,+!p2@HEY2!0.69!3.85!HEY2;;chr7:27153454..27153469,-!p2@HOXA3!0.69!3.85!HOXA3;;chr10:31288370..31288393,-!p3@ZNF438!0.69!3.85!ZNF438;;chr8:80679993..80680011,-!p1@HEY1!0.68!5.78!HEY1;;chr2:46602879..46602899,+!p8@EPAS1!0.68!4.68!EPAS1;;chr22:38597987..38598021,+!p2@MAFF!0.67!25.86!MAFF;;chr12:10875658..10875708,-!p2@CSDA!0.67!9.35!CSDA;;chr17:41623009..41623053,-!p4@ETV4!0.67!6.33!ETV4;;chr10:31288398..31288455,-!p2@ZNF438!0.67!4.40!ZNF438;;chr20:42295745..42295765,+!p1@MYBL2!0.66!68.50!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.49!MYBL2;;chr1:221052840..221052875,+!p4@HLX!0.66!4.40!HLX;;chr20:42602000..42602034,+!p5@TOX2!0.66!3.58!TOX2;;chr16:86600870..86600921,+!p2@FOXC2!0.66!3.58!FOXC2;;chr16:86601088..86601105,+!p5@FOXC2!0.66!3.58!FOXC2;;chr12:66218836..66218888,+!p1@HMGA2!0.65!38.24!HMGA2;;chr19:56152332..56152347,+!p4@ZNF580!0.65!8.80!ZNF580;;chr20:50721803..50721857,-!p2@ZFP64!0.65!5.78!ZFP64;;chr6:85473156..85473210,-!p2@TBX18!0.65!4.40!TBX18;;chr17:3571863..3571881,-!p1@TAX1BP3!0.64!282.55!TAX1BP3;;chr12:66218598..66218645,+!p2@HMGA2!0.64!18.16!HMGA2;;chr1:8934931..8934947,-!p4@ENO1!0.64!12.66!ENO1;;chr17:46655730..46655791,-!p1@HOXB4!0.64!9.35!HOXB4;;chr1:935496..935509,-!p3@HES4!0.64!5.50!HES4;;chr9:14314566..14314618,-!p1@NFIB!0.63!46.22!NFIB;;chr12:3068544..3068597,+!p1@TEAD4!0.63!23.11!TEAD4;;chr15:90544532..90544563,+!p1@ZNF710!0.63!7.15!ZNF710;;chr19:53496768..53496799,-!p1@ZNF702P!0.63!5.50!ZNF702P;;chr17:41622834..41622883,-!p6@ETV4!0.63!4.13!ETV4;;chr17:6926381..6926392,+!p2@BCL6B!0.63!3.30!BCL6B;;chr13:72441506..72441562,-!p3@DACH1!0.63!3.30!DACH1;;chr14:74256787..74256858,-!p6@C14orf43!0.63!3.30!C14orf43;;chr5:92919452..92919496,+!p11@NR2F1!0.63!3.30!NR2F1;;chr7:115670804..115670825,-!p1@TFEC!0.63!3.30!TFEC;;chr13:41240717..41240735,-!p2@FOXO1!0.62!25.31!FOXO1;;chr20:48599506..48599526,+!p1@SNAI1!0.62!24.21!SNAI1;;chr5:92918860..92918871,+!p10@NR2F1!0.62!3.58!NR2F1;;chr1:23885981..23886002,-!p1@ID3!0.61!645.98!ID3;;chr1:205601064..205601087,-!p4@ELK4!0.61!6.60!ELK4;;chr9:14313893..14313908,-!p7@NFIB!0.61!4.68!NFIB;;chr12:124873357..124873401,-!p1@NCOR2!0.60!41.82!NCOR2;;chr13:79177703..79177729,-!p2@POU4F1!0.60!3.03!POU4F1;;chr7:139741849..139741879,-!p12@PARP12!0.60!3.03!PARP12;;chr7:27183291..27183324,-!p1@HOXA5!0.60!3.03!HOXA5;;chr19:13213496..13213501,-!p10@LYL1!0.60!3.03!LYL1;;chr3:25470062..25470084,+!p4@RARB!0.60!3.03!RARB;;chr1:200011711..200011752,+!p3@NR5A2!0.60!3.03!NR5A2;;chr8:106330656..106330684,+!p1@ZFPM2!0.59!8.80!ZFPM2;;chr1:8926369..8926385,-!p12@ENO1!0.59!4.13!ENO1;;chr17:7590797..7590815,-!p1@TP53!0.58!149.11!TP53;;chr11:47236584..47236679,+!p1@DDB2!0.58!37.97!DDB2;;chr11:128563948..128564003,+!p1@FLI1!0.57!40.72!FLI1;;chr15:57211660..57211687,+!p6@TCF12!0.57!4.95!TCF12;;chr16:86601052..86601066,+!p4@FOXC2!0.57!2.75!FOXC2;;chr18:53068893..53068902,-!p28@TCF4!0.57!2.75!TCF4;;chr13:72441074..72441172,-!p2@DACH1!0.57!2.75!DACH1;;chr5:92918789..92918800,+!p12@NR2F1!0.57!2.75!NR2F1;;chr7:27170359..27170381,-!p1@HOXA4!0.57!2.75!HOXA4;;chr8:93115584..93115642,-!p5@RUNX1T1!0.57!2.75!RUNX1T1;;chr2:237076992..237077008,-!p2@GBX2!0.57!2.75!GBX2;;chr11:65667846..65667868,-!p1@FOSL1!0.56!86.94!FOSL1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.56!13.21!LRRFIP2;;chr3:141087393..141087426,+!p3@ZBTB38!0.56!12.66!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.56!4.40!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.56!4.40!HOXB2;;chr8:145535860..145535895,+!p2@HSF1!0.56!3.85!HSF1;;chr1:151032860..151032918,+!p1@MLLT11!0.55!38.24!MLLT11;;chr17:4890695..4890773,-!p2@CAMTA2!0.55!9.63!CAMTA2;;chr9:14314522..14314556,-!p3@NFIB!0.55!6.88!NFIB;;chr2:74730430..74730451,-!p1@LBX2!0.55!4.68!LBX2;;chr1:214161272..214161322,+!p1@PROX1!0.55!3.85!PROX1;;chr11:65667884..65667895,-!p2@FOSL1!0.54!11.83!FOSL1;;chr17:38498594..38498661,+!p2@RARA!0.54!9.90!RARA;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.80!MAZ;;chr5:92920456..92920488,+!p9@NR2F1!0.54!3.03!NR2F1;;chr5:92919375..92919438,+!p6@NR2F1!0.54!2.75!NR2F1;;chr12:3068196..3068232,+!p9@TEAD4!0.54!2.75!TEAD4;;chr12:66357214..66357233,+!p13@HMGA2!0.54!2.48!HMGA2;;chr16:30406423..30406447,+!p4@ZNF48!0.54!2.48!ZNF48;;chr1:47696918..47696935,-!p6@TAL1!0.54!2.48!TAL1;;chr7:27196267..27196311,-!p1@HOXA7!0.54!2.48!HOXA7;;chr6:34204973..34204990,+!p4@HMGA1!0.53!40.44!HMGA1;;chr11:65686732..65686756,+!p2@DRAP1!0.53!12.38!DRAP1;;chr16:2059754..2059777,-!p2@ZNF598!0.53!10.18!ZNF598;;chr12:3068501..3068515,+!p4@TEAD4!0.53!4.68!TEAD4;;chr1:156470494..156470505,-!p3@MEF2D!0.53!3.85!MEF2D;;chr17:46622440..46622477,-!p5@HOXB2!0.53!2.75!HOXB2;;chr12:11802753..11802834,+!p2@ETV6!0.52!14.31!ETV6;;chr7:149470641..149470694,-!p1@ZNF467!0.52!13.21!ZNF467;;chr18:51750414..51750449,-!p5@MBD2!0.52!5.23!MBD2;;chr6:21597370..21597408,+!p5@SOX4!0.52!4.13!SOX4;;chr4:2263809..2263854,-!p1@MXD4!0.51!113.90!MXD4;;chr6:130339710..130339745,+!p1@L3MBTL3!0.51!22.83!L3MBTL3;;chr19:1592714..1592762,-!p1@MBD3!0.51!21.73!MBD3;;chr16:1429627..1429662,-!p2@UNKL!0.51!7.98!UNKL;;chr4:146402843..146402864,+!p3@SMAD1!0.51!5.23!SMAD1;;chr12:66218378..66218401,+!p6@HMGA2!0.51!3.85!HMGA2;;chr17:41623667..41623682,-!p8@ETV4!0.51!2.48!ETV4;;chr17:41623716..41623727,-!p12@ETV4!0.51!2.20!ETV4;;chr3:168864383..16886440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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000413;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0002546,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor2.CNhs11977.11341-117F9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor2.CNhs11977.11341-117F9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor2.CNhs11977.11341-117F9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor2.CNhs11977.11341-117F9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor2.CNhs11977.11341-117F9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11341-117F9 | |id=FF:11341-117F9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000047 | ||
|is_obsolete= | |||
|library_id=CNhs11977 | |||
|library_id_phase_based=2:CNhs11977 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11341 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.AGTCAA.11341 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11341 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.AGTCAA.11341 | |||
|name=Endothelial Cells - Artery, donor2 | |name=Endothelial Cells - Artery, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11977,LSID836,release011,COMPLETED | |profile_hcage=CNhs11977,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA300-R10a | |rna_catalog_number=CA300-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117F9 | |rna_tube_id=117F9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.AGTCAA | |||
|sample_age=26 | |sample_age=26 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=artery | |sample_tissue=artery | ||
|top_motifs=RXR{A,B,G}:2.26117470982;SOX{8,9,10}:1.70104427309;FOX{I1,J2}:1.28684926112;UFEwm:1.27606046994;ARID5B:1.21331223419;ONECUT1,2:1.19751532649;AR:1.18894303467;IKZF1:1.13014456874;NKX2-2,8:1.05900285289;NR3C1:1.04298074304;IKZF2:1.03437493561;NFATC1..3:1.01680790857;TLX1..3_NFIC{dimer}:0.951026050754;SPZ1:0.913334546203;HES1:0.883048061882;ZNF148:0.879217155054;PAX5:0.837596682281;XCPE1{core}:0.830826445851;SOX5:0.762668442652;SOX2:0.715615026377;bHLH_family:0.677740163861;ZIC1..3:0.670025194511;ZNF423:0.65597157896;FOXL1:0.643071900882;FOXM1:0.624482315527;GTF2A1,2:0.616807627386;NFE2L1:0.609481043334;TFAP2{A,C}:0.608604622564;ZBTB6:0.59451514093;PAX6:0.575892401401;HIC1:0.551270939209;TP53:0.496424478163;ELF1,2,4:0.491672415875;EBF1:0.473146565429;KLF4:0.465622113582;FOXD3:0.463665175159;GATA4:0.462264618194;TFDP1:0.441704171287;POU3F1..4:0.438951099452;TFAP4:0.436223616444;PAX1,9:0.435554550422;ETS1,2:0.43235327928;HAND1,2:0.414488626261;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.393752366877;MYB:0.380790258042;GATA6:0.379436545433;PAX8:0.353686177167;ESRRA:0.350766435764;SPIB:0.340320126066;PPARG:0.335850932739;ZFP161:0.29745801145;CDC5L:0.287212921978;GZF1:0.27513317149;ALX4:0.242655562185;PITX1..3:0.229598026968;HNF4A_NR2F1,2:0.228414068249;LHX3,4:0.225124259615;E2F1..5:0.204207373867;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.201822968985;TFAP2B:0.199161333716;ZNF143:0.171331688416;BACH2:0.168876320986;SMAD1..7,9:0.166329009367;EN1,2:0.161851003473;TEAD1:0.144696846949;MTE{core}:0.138833288585;SOX17:0.125009983149;EVI1:0.106443765663;RXRA_VDR{dimer}:0.105253222448;STAT5{A,B}:0.101683368581;HOXA9_MEIS1:0.0983692242129;PATZ1:0.0770837816328;SPI1:0.0755709245731;LMO2:0.0734332989162;REST:0.0647822432071;GCM1,2:0.0437979250582;SP1:0.0406571651361;TEF:0.0204113473533;YY1:0.0153810766203;T:0.0132104305316;SRF:0.00568928724571;STAT2,4,6:0.00489738195301;NR5A1,2:0.000272820301258;LEF1_TCF7_TCF7L1,2:-0.0156504149038;MYOD1:-0.0190810521913;MTF1:-0.0202805570811;TBP:-0.0211952482563;GTF2I:-0.0403074375169;HOX{A5,B5}:-0.0618748315436;FOS_FOS{B,L1}_JUN{B,D}:-0.0690537701366;NFY{A,B,C}:-0.0712105121146;EGR1..3:-0.0795749318434;RBPJ:-0.0844542128922;NFE2:-0.102937677176;POU2F1..3:-0.104916553636;PRDM1:-0.117705448759;FOSL2:-0.122994216267;TFCP2:-0.127700207334;DMAP1_NCOR{1,2}_SMARC:-0.131729146938;ATF6:-0.148561452524;NRF1:-0.150166362914;GFI1B:-0.165232299433;NFE2L2:-0.182698797819;ALX1:-0.191152421363;MZF1:-0.192062243239;AIRE:-0.199912079013;NKX3-2:-0.200763360834;MED-1{core}:-0.203229141189;FOXA2:-0.20386281244;GFI1:-0.217731154729;MAZ:-0.221021169345;ADNP_IRX_SIX_ZHX:-0.23688589183;HBP1_HMGB_SSRP1_UBTF:-0.237220891875;PBX1:-0.237472157199;POU6F1:-0.257967500442;RORA:-0.264115081147;HMGA1,2:-0.272468407276;RREB1:-0.287995402017;PAX4:-0.296543381856;HMX1:-0.323463817407;ESR1:-0.328766724449;NANOG{mouse}:-0.336404805676;NFKB1_REL_RELA:-0.342804483755;TBX4,5:-0.349324806026;NR6A1:-0.349760736978;BPTF:-0.351107771388;HNF1A:-0.366394604211;FOXP3:-0.390264606633;FOXQ1:-0.390385642234;CUX2:-0.399891202717;NHLH1,2:-0.409217171255;GLI1..3:-0.409392604968;ELK1,4_GABP{A,B1}:-0.420698880687;RFX1:-0.4227149441;IRF1,2:-0.429439436437;SNAI1..3:-0.434704751728;OCT4_SOX2{dimer}:-0.438206508642;ZBTB16:-0.444055526072;HSF1,2:-0.472561833731;CRX:-0.512869261596;HLF:-0.521388467371;ZNF238:-0.525619017785;NKX2-1,4:-0.538664204955;NFIL3:-0.548882354343;PRRX1,2:-0.56272396547;BREu{core}:-0.59033417067;RUNX1..3:-0.594403519934;POU1F1:-0.595996936814;IRF7:-0.602447378639;PAX3,7:-0.603458689529;NANOG:-0.618003303277;MEF2{A,B,C,D}:-0.618133487528;MYFfamily:-0.619299640478;SREBF1,2:-0.61971608694;FOXN1:-0.622632921999;NR1H4:-0.630498123142;TLX2:-0.638944223228;EP300:-0.644569206145;ZEB1:-0.647118987583;NKX3-1:-0.656857593601;CREB1:-0.669278205036;JUN:-0.686324235469;XBP1:-0.689111074107;CDX1,2,4:-0.695202081646;PAX2:-0.703052518417;NFIX:-0.706487418086;TOPORS:-0.727192912103;PDX1:-0.731539578437;FOX{F1,F2,J1}:-0.739070086239;FOX{D1,D2}:-0.739539448008;FOXP1:-0.757721746146;DBP:-0.774579241826;ZNF384:-0.775352375995;ATF4:-0.775717562842;CEBPA,B_DDIT3:-0.783651421986;POU5F1:-0.806787686964;TAL1_TCF{3,4,12}:-0.840330045634;HIF1A:-0.880557043101;MAFB:-0.889095794873;ATF2:-0.903829403893;TGIF1:-0.940123996269;AHR_ARNT_ARNT2:-0.979514630777;FOXO1,3,4:-0.994450851504;NKX6-1,2:-1.06142651291;NKX2-3_NKX2-5:-1.07378264923;STAT1,3:-1.09890306204;ATF5_CREB3:-1.12835988102;HOX{A6,A7,B6,B7}:-1.17774475341;MYBL2:-1.18113885175;RFX2..5_RFXANK_RFXAP:-1.20265212414;HOX{A4,D4}:-1.20273245968;VSX1,2:-1.25106645539 | |top_motifs=RXR{A,B,G}:2.26117470982;SOX{8,9,10}:1.70104427309;FOX{I1,J2}:1.28684926112;UFEwm:1.27606046994;ARID5B:1.21331223419;ONECUT1,2:1.19751532649;AR:1.18894303467;IKZF1:1.13014456874;NKX2-2,8:1.05900285289;NR3C1:1.04298074304;IKZF2:1.03437493561;NFATC1..3:1.01680790857;TLX1..3_NFIC{dimer}:0.951026050754;SPZ1:0.913334546203;HES1:0.883048061882;ZNF148:0.879217155054;PAX5:0.837596682281;XCPE1{core}:0.830826445851;SOX5:0.762668442652;SOX2:0.715615026377;bHLH_family:0.677740163861;ZIC1..3:0.670025194511;ZNF423:0.65597157896;FOXL1:0.643071900882;FOXM1:0.624482315527;GTF2A1,2:0.616807627386;NFE2L1:0.609481043334;TFAP2{A,C}:0.608604622564;ZBTB6:0.59451514093;PAX6:0.575892401401;HIC1:0.551270939209;TP53:0.496424478163;ELF1,2,4:0.491672415875;EBF1:0.473146565429;KLF4:0.465622113582;FOXD3:0.463665175159;GATA4:0.462264618194;TFDP1:0.441704171287;POU3F1..4:0.438951099452;TFAP4:0.436223616444;PAX1,9:0.435554550422;ETS1,2:0.43235327928;HAND1,2:0.414488626261;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.393752366877;MYB:0.380790258042;GATA6:0.379436545433;PAX8:0.353686177167;ESRRA:0.350766435764;SPIB:0.340320126066;PPARG:0.335850932739;ZFP161:0.29745801145;CDC5L:0.287212921978;GZF1:0.27513317149;ALX4:0.242655562185;PITX1..3:0.229598026968;HNF4A_NR2F1,2:0.228414068249;LHX3,4:0.225124259615;E2F1..5:0.204207373867;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.201822968985;TFAP2B:0.199161333716;ZNF143:0.171331688416;BACH2:0.168876320986;SMAD1..7,9:0.166329009367;EN1,2:0.161851003473;TEAD1:0.144696846949;MTE{core}:0.138833288585;SOX17:0.125009983149;EVI1:0.106443765663;RXRA_VDR{dimer}:0.105253222448;STAT5{A,B}:0.101683368581;HOXA9_MEIS1:0.0983692242129;PATZ1:0.0770837816328;SPI1:0.0755709245731;LMO2:0.0734332989162;REST:0.0647822432071;GCM1,2:0.0437979250582;SP1:0.0406571651361;TEF:0.0204113473533;YY1:0.0153810766203;T:0.0132104305316;SRF:0.00568928724571;STAT2,4,6:0.00489738195301;NR5A1,2:0.000272820301258;LEF1_TCF7_TCF7L1,2:-0.0156504149038;MYOD1:-0.0190810521913;MTF1:-0.0202805570811;TBP:-0.0211952482563;GTF2I:-0.0403074375169;HOX{A5,B5}:-0.0618748315436;FOS_FOS{B,L1}_JUN{B,D}:-0.0690537701366;NFY{A,B,C}:-0.0712105121146;EGR1..3:-0.0795749318434;RBPJ:-0.0844542128922;NFE2:-0.102937677176;POU2F1..3:-0.104916553636;PRDM1:-0.117705448759;FOSL2:-0.122994216267;TFCP2:-0.127700207334;DMAP1_NCOR{1,2}_SMARC:-0.131729146938;ATF6:-0.148561452524;NRF1:-0.150166362914;GFI1B:-0.165232299433;NFE2L2:-0.182698797819;ALX1:-0.191152421363;MZF1:-0.192062243239;AIRE:-0.199912079013;NKX3-2:-0.200763360834;MED-1{core}:-0.203229141189;FOXA2:-0.20386281244;GFI1:-0.217731154729;MAZ:-0.221021169345;ADNP_IRX_SIX_ZHX:-0.23688589183;HBP1_HMGB_SSRP1_UBTF:-0.237220891875;PBX1:-0.237472157199;POU6F1:-0.257967500442;RORA:-0.264115081147;HMGA1,2:-0.272468407276;RREB1:-0.287995402017;PAX4:-0.296543381856;HMX1:-0.323463817407;ESR1:-0.328766724449;NANOG{mouse}:-0.336404805676;NFKB1_REL_RELA:-0.342804483755;TBX4,5:-0.349324806026;NR6A1:-0.349760736978;BPTF:-0.351107771388;HNF1A:-0.366394604211;FOXP3:-0.390264606633;FOXQ1:-0.390385642234;CUX2:-0.399891202717;NHLH1,2:-0.409217171255;GLI1..3:-0.409392604968;ELK1,4_GABP{A,B1}:-0.420698880687;RFX1:-0.4227149441;IRF1,2:-0.429439436437;SNAI1..3:-0.434704751728;OCT4_SOX2{dimer}:-0.438206508642;ZBTB16:-0.444055526072;HSF1,2:-0.472561833731;CRX:-0.512869261596;HLF:-0.521388467371;ZNF238:-0.525619017785;NKX2-1,4:-0.538664204955;NFIL3:-0.548882354343;PRRX1,2:-0.56272396547;BREu{core}:-0.59033417067;RUNX1..3:-0.594403519934;POU1F1:-0.595996936814;IRF7:-0.602447378639;PAX3,7:-0.603458689529;NANOG:-0.618003303277;MEF2{A,B,C,D}:-0.618133487528;MYFfamily:-0.619299640478;SREBF1,2:-0.61971608694;FOXN1:-0.622632921999;NR1H4:-0.630498123142;TLX2:-0.638944223228;EP300:-0.644569206145;ZEB1:-0.647118987583;NKX3-1:-0.656857593601;CREB1:-0.669278205036;JUN:-0.686324235469;XBP1:-0.689111074107;CDX1,2,4:-0.695202081646;PAX2:-0.703052518417;NFIX:-0.706487418086;TOPORS:-0.727192912103;PDX1:-0.731539578437;FOX{F1,F2,J1}:-0.739070086239;FOX{D1,D2}:-0.739539448008;FOXP1:-0.757721746146;DBP:-0.774579241826;ZNF384:-0.775352375995;ATF4:-0.775717562842;CEBPA,B_DDIT3:-0.783651421986;POU5F1:-0.806787686964;TAL1_TCF{3,4,12}:-0.840330045634;HIF1A:-0.880557043101;MAFB:-0.889095794873;ATF2:-0.903829403893;TGIF1:-0.940123996269;AHR_ARNT_ARNT2:-0.979514630777;FOXO1,3,4:-0.994450851504;NKX6-1,2:-1.06142651291;NKX2-3_NKX2-5:-1.07378264923;STAT1,3:-1.09890306204;ATF5_CREB3:-1.12835988102;HOX{A6,A7,B6,B7}:-1.17774475341;MYBL2:-1.18113885175;RFX2..5_RFXANK_RFXAP:-1.20265212414;HOX{A4,D4}:-1.20273245968;VSX1,2:-1.25106645539 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11341-117F9;search_select_hide=table117:FF:11341-117F9 | |||
}} | }} | ||
Latest revision as of 17:53, 4 June 2020
| Name: | Endothelial Cells - Artery, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11977 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11977
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11977
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.831 |
| 10 | 10 | 0.881 |
| 100 | 100 | 0.753 |
| 101 | 101 | 0.1 |
| 102 | 102 | 0.6 |
| 103 | 103 | 0.299 |
| 104 | 104 | 0.992 |
| 105 | 105 | 0.137 |
| 106 | 106 | 0.0741 |
| 107 | 107 | 0.0188 |
| 108 | 108 | 0.18 |
| 109 | 109 | 0.175 |
| 11 | 11 | 0.203 |
| 110 | 110 | 0.0405 |
| 111 | 111 | 0.411 |
| 112 | 112 | 0.646 |
| 113 | 113 | 0.429 |
| 114 | 114 | 0.341 |
| 115 | 115 | 0.481 |
| 116 | 116 | 0.0806 |
| 117 | 117 | 0.632 |
| 118 | 118 | 0.382 |
| 119 | 119 | 0.66 |
| 12 | 12 | 0.819 |
| 120 | 120 | 0.00104 |
| 121 | 121 | 0.995 |
| 122 | 122 | 0.43 |
| 123 | 123 | 0.0143 |
| 124 | 124 | 0.0374 |
| 125 | 125 | 0.386 |
| 126 | 126 | 0.492 |
| 127 | 127 | 0.923 |
| 128 | 128 | 0.99 |
| 129 | 129 | 0.367 |
| 13 | 13 | 0.318 |
| 130 | 130 | 0.752 |
| 131 | 131 | 0.253 |
| 132 | 132 | 0.185 |
| 133 | 133 | 0.45 |
| 134 | 134 | 0.0985 |
| 135 | 135 | 0.561 |
| 136 | 136 | 0.00902 |
| 137 | 137 | 0.114 |
| 138 | 138 | 0.819 |
| 139 | 139 | 0.759 |
| 14 | 14 | 0.433 |
| 140 | 140 | 0.35 |
| 141 | 141 | 0.537 |
| 142 | 142 | 0.627 |
| 143 | 143 | 0.187 |
| 144 | 144 | 0.396 |
| 145 | 145 | 0.297 |
| 146 | 146 | 0.956 |
| 147 | 147 | 0.0832 |
| 148 | 148 | 0.96 |
| 149 | 149 | 0.0846 |
| 15 | 15 | 0.864 |
| 150 | 150 | 0.0587 |
| 151 | 151 | 0.587 |
| 152 | 152 | 0.0207 |
| 153 | 153 | 0.0201 |
| 154 | 154 | 0.436 |
| 155 | 155 | 0.885 |
| 156 | 156 | 0.233 |
| 157 | 157 | 0.557 |
| 158 | 158 | 0.0396 |
| 159 | 159 | 0.595 |
| 16 | 16 | 0.364 |
| 160 | 160 | 0.06 |
| 161 | 161 | 0.424 |
| 162 | 162 | 0.729 |
| 163 | 163 | 0.91 |
| 164 | 164 | 0.0711 |
| 165 | 165 | 0.326 |
| 166 | 166 | 0.191 |
| 167 | 167 | 0.149 |
| 168 | 168 | 0.368 |
| 169 | 169 | 0.0902 |
| 17 | 17 | 0.244 |
| 18 | 18 | 0.767 |
| 19 | 19 | 0.163 |
| 2 | 2 | 0.535 |
| 20 | 20 | 0.562 |
| 21 | 21 | 0.388 |
| 22 | 22 | 0.348 |
| 23 | 23 | 0.865 |
| 24 | 24 | 0.76 |
| 25 | 25 | 0.458 |
| 26 | 26 | 0.824 |
| 27 | 27 | 0.486 |
| 28 | 28 | 0.135 |
| 29 | 29 | 0.185 |
| 3 | 3 | 0.976 |
| 30 | 30 | 0.684 |
| 31 | 31 | 0.876 |
| 32 | 32 | 0.418 |
| 33 | 33 | 0.762 |
| 34 | 34 | 0.359 |
| 35 | 35 | 0.597 |
| 36 | 36 | 0.364 |
| 37 | 37 | 0.187 |
| 38 | 38 | 0.457 |
| 39 | 39 | 0.353 |
| 4 | 4 | 0.473 |
| 40 | 40 | 0.134 |
| 41 | 41 | 0.202 |
| 42 | 42 | 0.743 |
| 43 | 43 | 0.872 |
| 44 | 44 | 0.0707 |
| 45 | 45 | 0.508 |
| 46 | 46 | 0.393 |
| 47 | 47 | 0.261 |
| 48 | 48 | 0.142 |
| 49 | 49 | 0.278 |
| 5 | 5 | 0.472 |
| 50 | 50 | 0.831 |
| 51 | 51 | 0.555 |
| 52 | 52 | 0.608 |
| 53 | 53 | 0.195 |
| 54 | 54 | 0.854 |
| 55 | 55 | 0.33 |
| 56 | 56 | 0.856 |
| 57 | 57 | 0.986 |
| 58 | 58 | 0.161 |
| 59 | 59 | 0.0162 |
| 6 | 6 | 0.161 |
| 60 | 60 | 1 |
| 61 | 61 | 0.651 |
| 62 | 62 | 0.825 |
| 63 | 63 | 0.563 |
| 64 | 64 | 0.97 |
| 65 | 65 | 0.642 |
| 66 | 66 | 0.568 |
| 67 | 67 | 0.275 |
| 68 | 68 | 0.437 |
| 69 | 69 | 0.086 |
| 7 | 7 | 0.858 |
| 70 | 70 | 0.697 |
| 71 | 71 | 0.977 |
| 72 | 72 | 0.587 |
| 73 | 73 | 5.32496e-4 |
| 74 | 74 | 0.726 |
| 75 | 75 | 0.222 |
| 76 | 76 | 0.795 |
| 77 | 77 | 0.0394 |
| 78 | 78 | 0.292 |
| 79 | 79 | 0.0129 |
| 8 | 8 | 0.0178 |
| 80 | 80 | 0.693 |
| 81 | 81 | 0.573 |
| 82 | 82 | 0.857 |
| 83 | 83 | 0.118 |
| 84 | 84 | 0.0973 |
| 85 | 85 | 0.84 |
| 86 | 86 | 0.995 |
| 87 | 87 | 0.0252 |
| 88 | 88 | 0.59 |
| 89 | 89 | 0.584 |
| 9 | 9 | 0.656 |
| 90 | 90 | 0.705 |
| 91 | 91 | 0.517 |
| 92 | 92 | 0.853 |
| 93 | 93 | 0.162 |
| 94 | 94 | 0.593 |
| 95 | 95 | 0.0249 |
| 96 | 96 | 0.861 |
| 97 | 97 | 0.832 |
| 98 | 98 | 0.766 |
| 99 | 99 | 0.0154 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11977
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000047 human endothelial cell of the artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
