FF:11341-117F9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004960 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004960 | ||
|accession_numbers=CAGE;DRX008221;DRR009093;DRZ000518;DRZ001903;DRZ011868;DRZ013253 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037021;DRR041387;DRZ007029 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor2.CNhs11977.11341-117F9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor2.CNhs11977.11341-117F9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor2.CNhs11977.11341-117F9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor2.CNhs11977.11341-117F9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor2.CNhs11977.11341-117F9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11341-117F9 | |id=FF:11341-117F9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000047 | ||
|is_obsolete= | |||
|library_id=CNhs11977 | |||
|library_id_phase_based=2:CNhs11977 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11341 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.AGTCAA.11341 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11341 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.AGTCAA.11341 | |||
|name=Endothelial Cells - Artery, donor2 | |name=Endothelial Cells - Artery, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11977,LSID836,release011,COMPLETED | |profile_hcage=CNhs11977,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.26304389995706,0,0.145999797849932,-0.0297644996664606,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0370748311243951,0,0,0,0.483153982833195,0,0.325404033775389,0,0,0.0574412516939604,0,0,0,0,0,0,0,0,0,0,0,0,0.200200074984986,0.0579132800621896,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.105550390723108,0,0.0581047218573267,0,0.164354770547282,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198582907160986,0,0,0,0.269751412123522,0.338210225283568,0,0.105550390723108,0,0,0.00751503948540205,-0.00780363490595145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.105550390723108,0,0,0.0598563168032702,0.211692063471222,0,0,0.060243623849221,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA300-R10a | |rna_catalog_number=CA300-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117F9 | |rna_tube_id=117F9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.AGTCAA | |||
|sample_age=26 | |sample_age=26 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.57121006624496e-239!GO:0005737;cytoplasm;3.03160666704726e-192!GO:0043226;organelle;3.24325205644221e-190!GO:0043229;intracellular organelle;6.20280198715993e-190!GO:0043231;intracellular membrane-bound organelle;3.8071447086582e-184!GO:0043227;membrane-bound organelle;8.94101578607648e-184!GO:0044422;organelle part;3.22408627022334e-145!GO:0044446;intracellular organelle part;7.46390849737018e-144!GO:0044444;cytoplasmic part;1.08553121796988e-136!GO:0032991;macromolecular complex;1.31079144046927e-98!GO:0005515;protein binding;3.42522170434935e-87!GO:0044238;primary metabolic process;6.66746261494194e-86!GO:0044237;cellular metabolic process;1.01942580292203e-83!GO:0030529;ribonucleoprotein complex;2.30064278988704e-83!GO:0043170;macromolecule metabolic process;3.35441315416492e-79!GO:0043233;organelle lumen;2.98540565753486e-72!GO:0031974;membrane-enclosed lumen;2.98540565753486e-72!GO:0005634;nucleus;2.12046292511689e-70!GO:0044428;nuclear part;5.64833687365492e-70!GO:0003723;RNA binding;2.49024800077593e-69!GO:0005739;mitochondrion;1.77353235758404e-66!GO:0019538;protein metabolic process;1.32417602612176e-55!GO:0016043;cellular component organization and biogenesis;1.22989643064896e-52!GO:0031090;organelle membrane;2.43151922696185e-52!GO:0043234;protein complex;1.41446317652247e-50!GO:0006412;translation;2.17868840105641e-50!GO:0005840;ribosome;4.11843821653335e-50!GO:0044260;cellular macromolecule metabolic process;1.68265635015192e-48!GO:0044267;cellular protein metabolic process;1.98443530725582e-48!GO:0006396;RNA processing;1.40022064492224e-46!GO:0044429;mitochondrial part;3.71476889677479e-45!GO:0003735;structural constituent of ribosome;8.77748634988852e-44!GO:0031981;nuclear lumen;1.23840182153197e-43!GO:0043283;biopolymer metabolic process;2.41434080220568e-42!GO:0015031;protein transport;1.32076500365131e-41!GO:0005829;cytosol;2.76658382301749e-41!GO:0033036;macromolecule localization;2.85978653678511e-41!GO:0031967;organelle envelope;4.26246897255628e-41!GO:0031975;envelope;1.03525836989299e-40!GO:0044249;cellular biosynthetic process;2.55056926630252e-39!GO:0009058;biosynthetic process;3.07658132177219e-39!GO:0009059;macromolecule biosynthetic process;1.4799866289068e-38!GO:0033279;ribosomal subunit;3.19706694988316e-38!GO:0045184;establishment of protein localization;3.48004318214537e-38!GO:0008104;protein localization;6.47520148684818e-38!GO:0043228;non-membrane-bound organelle;1.77134709033155e-37!GO:0043232;intracellular non-membrane-bound organelle;1.77134709033155e-37!GO:0006996;organelle organization and biogenesis;3.83124733145144e-37!GO:0016071;mRNA metabolic process;3.72330471077936e-35!GO:0010467;gene expression;6.63829842636171e-35!GO:0065003;macromolecular complex assembly;1.11516641098938e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.11454699392104e-34!GO:0046907;intracellular transport;1.45513031043557e-33!GO:0008380;RNA splicing;1.84905239551004e-33!GO:0022607;cellular component assembly;1.30243973354896e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.46963858450252e-31!GO:0006397;mRNA processing;2.09495166441276e-30!GO:0005740;mitochondrial envelope;2.72333164204441e-30!GO:0000166;nucleotide binding;4.20689916367127e-29!GO:0031966;mitochondrial membrane;1.95777985365773e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.31871873913078e-28!GO:0006886;intracellular protein transport;8.846364652774e-28!GO:0006259;DNA metabolic process;2.3292639101997e-27!GO:0019866;organelle inner membrane;3.81312531047191e-26!GO:0005654;nucleoplasm;6.58214792896598e-26!GO:0005681;spliceosome;4.34643280973811e-24!GO:0005743;mitochondrial inner membrane;4.55700904673606e-24!GO:0007049;cell cycle;1.48149311965082e-23!GO:0016462;pyrophosphatase activity;2.93004426566961e-23!GO:0044445;cytosolic part;3.84029030343006e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.89693726389558e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;5.88292497807371e-23!GO:0017111;nucleoside-triphosphatase activity;8.09846387198262e-23!GO:0051649;establishment of cellular localization;1.89105058124608e-22!GO:0051641;cellular localization;2.47013157701684e-22!GO:0012505;endomembrane system;9.09296081519033e-22!GO:0006119;oxidative phosphorylation;2.4118050288609e-21!GO:0032553;ribonucleotide binding;2.56840376935811e-21!GO:0032555;purine ribonucleotide binding;2.56840376935811e-21!GO:0017076;purine nucleotide binding;4.66235855481464e-21!GO:0044451;nucleoplasm part;8.85028578647716e-21!GO:0015935;small ribosomal subunit;3.14156307857084e-20!GO:0015934;large ribosomal subunit;4.26741870867988e-19!GO:0005730;nucleolus;6.90656460775735e-19!GO:0044455;mitochondrial membrane part;7.4827204069523e-19!GO:0031980;mitochondrial lumen;1.18426974374945e-18!GO:0005759;mitochondrial matrix;1.18426974374945e-18!GO:0022402;cell cycle process;2.19908787805641e-18!GO:0006457;protein folding;2.19975513983119e-18!GO:0005783;endoplasmic reticulum;2.27242774238961e-18!GO:0016874;ligase activity;9.85420903951767e-18!GO:0005794;Golgi apparatus;1.17424791883268e-17!GO:0008134;transcription factor binding;2.02840248964303e-17!GO:0000278;mitotic cell cycle;2.49389966718847e-17!GO:0022618;protein-RNA complex assembly;2.82791848931291e-17!GO:0003676;nucleic acid binding;5.84383799838039e-17!GO:0044265;cellular macromolecule catabolic process;1.09944571926451e-16!GO:0005524;ATP binding;1.27639991583787e-16!GO:0032559;adenyl ribonucleotide binding;1.47964952087758e-16!GO:0006512;ubiquitin cycle;1.58007140892931e-16!GO:0043285;biopolymer catabolic process;1.97220334147869e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.14051648692511e-16!GO:0043412;biopolymer modification;3.25115179268713e-16!GO:0030554;adenyl nucleotide binding;3.60756564789572e-16!GO:0048770;pigment granule;8.05440425748604e-16!GO:0042470;melanosome;8.05440425748604e-16!GO:0005746;mitochondrial respiratory chain;1.06820359974953e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.24754131579468e-15!GO:0009057;macromolecule catabolic process;1.51263188931227e-15!GO:0019941;modification-dependent protein catabolic process;1.68221232384185e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.68221232384185e-15!GO:0044432;endoplasmic reticulum part;1.84855578942746e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.93491420304853e-15!GO:0006605;protein targeting;2.47363270726513e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.63278048423983e-15!GO:0044257;cellular protein catabolic process;3.11889956176162e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.41213088480772e-15!GO:0008135;translation factor activity, nucleic acid binding;5.5859052606654e-15!GO:0006464;protein modification process;1.25444140461397e-14!GO:0042254;ribosome biogenesis and assembly;1.26240363396436e-14!GO:0006974;response to DNA damage stimulus;1.98822439483288e-14!GO:0030163;protein catabolic process;2.34354479651577e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.41214607850273e-14!GO:0003954;NADH dehydrogenase activity;2.41214607850273e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.41214607850273e-14!GO:0005694;chromosome;2.99979329991678e-14!GO:0016192;vesicle-mediated transport;3.42082005760576e-14!GO:0051186;cofactor metabolic process;5.15248439150413e-14!GO:0005761;mitochondrial ribosome;7.26063338824456e-14!GO:0000313;organellar ribosome;7.26063338824456e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.33583579416618e-13!GO:0044248;cellular catabolic process;1.60484765376558e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.93619068930833e-13!GO:0051276;chromosome organization and biogenesis;4.46572119177718e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.57719036167335e-13!GO:0000375;RNA splicing, via transesterification reactions;4.57719036167335e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.57719036167335e-13!GO:0044427;chromosomal part;6.88803428202106e-13!GO:0043687;post-translational protein modification;9.55441353599605e-13!GO:0048193;Golgi vesicle transport;1.0968467731381e-12!GO:0012501;programmed cell death;1.29588630195588e-12!GO:0016070;RNA metabolic process;1.45701286182204e-12!GO:0006915;apoptosis;1.59359378104818e-12!GO:0051082;unfolded protein binding;1.59543382803253e-12!GO:0042623;ATPase activity, coupled;1.64218591284876e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.9446742029563e-12!GO:0045271;respiratory chain complex I;1.9446742029563e-12!GO:0005747;mitochondrial respiratory chain complex I;1.9446742029563e-12!GO:0000087;M phase of mitotic cell cycle;2.02086208863703e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.03018728713726e-12!GO:0042773;ATP synthesis coupled electron transport;2.03018728713726e-12!GO:0016887;ATPase activity;2.09748682246509e-12!GO:0007067;mitosis;2.61114196096795e-12!GO:0022403;cell cycle phase;2.80474720142228e-12!GO:0003743;translation initiation factor activity;5.15763203533581e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.26084596671721e-12!GO:0051301;cell division;5.49387832518664e-12!GO:0005635;nuclear envelope;7.72031403489954e-12!GO:0006281;DNA repair;1.1835220934457e-11!GO:0044453;nuclear membrane part;1.2364993384499e-11!GO:0003712;transcription cofactor activity;1.26170476723733e-11!GO:0031965;nuclear membrane;1.33419191272599e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.19507048964815e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;2.41921378312544e-11!GO:0006413;translational initiation;5.00697584146892e-11!GO:0006461;protein complex assembly;5.67030045204286e-11!GO:0016604;nuclear body;6.69354531591289e-11!GO:0008219;cell death;6.69354531591289e-11!GO:0016265;death;6.69354531591289e-11!GO:0005789;endoplasmic reticulum membrane;7.9172884374166e-11!GO:0009719;response to endogenous stimulus;8.0766585976678e-11!GO:0051726;regulation of cell cycle;8.26684372498469e-11!GO:0006732;coenzyme metabolic process;8.50509301799319e-11!GO:0006323;DNA packaging;1.00102963825558e-10!GO:0000074;regulation of progression through cell cycle;1.27116665440735e-10!GO:0006260;DNA replication;1.7436933566613e-10!GO:0009259;ribonucleotide metabolic process;1.76887162593823e-10!GO:0005793;ER-Golgi intermediate compartment;1.85367934272866e-10!GO:0009055;electron carrier activity;1.92572169194235e-10!GO:0006163;purine nucleotide metabolic process;2.48347239915781e-10!GO:0006399;tRNA metabolic process;4.32146596601722e-10!GO:0006913;nucleocytoplasmic transport;4.94389743953368e-10!GO:0008639;small protein conjugating enzyme activity;5.76514485051978e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.05367298870846e-10!GO:0009150;purine ribonucleotide metabolic process;6.06209753274199e-10!GO:0048523;negative regulation of cellular process;6.4249053454744e-10!GO:0006364;rRNA processing;6.63323468474959e-10!GO:0006446;regulation of translational initiation;7.92217669583964e-10!GO:0004842;ubiquitin-protein ligase activity;1.17847732020986e-09!GO:0051169;nuclear transport;1.19627666961321e-09!GO:0000785;chromatin;1.31146837221306e-09!GO:0016072;rRNA metabolic process;1.35688380896087e-09!GO:0019787;small conjugating protein ligase activity;2.20525312730704e-09!GO:0000279;M phase;2.26613951469024e-09!GO:0006164;purine nucleotide biosynthetic process;2.35478945863002e-09!GO:0006333;chromatin assembly or disassembly;2.43272575351764e-09!GO:0009260;ribonucleotide biosynthetic process;3.80252980225364e-09!GO:0065004;protein-DNA complex assembly;4.45842133983515e-09!GO:0008565;protein transporter activity;4.57521751048953e-09!GO:0004386;helicase activity;5.60770705133454e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.69725082735344e-09!GO:0005643;nuclear pore;6.18311222401227e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.57783466034715e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.21207671123344e-09!GO:0009199;ribonucleoside triphosphate metabolic process;8.65489909308571e-09!GO:0008026;ATP-dependent helicase activity;9.75293022742026e-09!GO:0016023;cytoplasmic membrane-bound vesicle;1.09445940670658e-08!GO:0009141;nucleoside triphosphate metabolic process;1.30992435117786e-08!GO:0006366;transcription from RNA polymerase II promoter;1.31525808973915e-08!GO:0031988;membrane-bound vesicle;1.42186934341022e-08!GO:0009056;catabolic process;1.55289249113907e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.58029030951925e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.58029030951925e-08!GO:0006793;phosphorus metabolic process;1.68695067145195e-08!GO:0006796;phosphate metabolic process;1.68695067145195e-08!GO:0050794;regulation of cellular process;2.08973913242503e-08!GO:0016881;acid-amino acid ligase activity;2.13758494259692e-08!GO:0016607;nuclear speck;2.18203553078791e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.24669099945736e-08!GO:0003924;GTPase activity;2.42713312469031e-08!GO:0015986;ATP synthesis coupled proton transport;2.7993013467142e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.7993013467142e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.8758510294532e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.8758510294532e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.8758510294532e-08!GO:0048519;negative regulation of biological process;2.8758510294532e-08!GO:0065002;intracellular protein transport across a membrane;2.97164009487253e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.5635076273357e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.5635076273357e-08!GO:0017038;protein import;4.13595428258975e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.22581971678772e-08!GO:0019829;cation-transporting ATPase activity;5.3358966785531e-08!GO:0015630;microtubule cytoskeleton;5.44136197338227e-08!GO:0009060;aerobic respiration;5.64140908192196e-08!GO:0005525;GTP binding;6.33607337581992e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.61380786545441e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.61380786545441e-08!GO:0046930;pore complex;6.71284597636429e-08!GO:0043038;amino acid activation;6.82194255203945e-08!GO:0006418;tRNA aminoacylation for protein translation;6.82194255203945e-08!GO:0043039;tRNA aminoacylation;6.82194255203945e-08!GO:0051246;regulation of protein metabolic process;8.92254825534079e-08!GO:0042981;regulation of apoptosis;8.98873315363818e-08!GO:0044431;Golgi apparatus part;9.39603543923426e-08!GO:0006334;nucleosome assembly;1.06624123986029e-07!GO:0043067;regulation of programmed cell death;1.08536261564954e-07!GO:0046034;ATP metabolic process;1.16199059250008e-07!GO:0050657;nucleic acid transport;1.19225459205395e-07!GO:0051236;establishment of RNA localization;1.19225459205395e-07!GO:0050658;RNA transport;1.19225459205395e-07!GO:0016310;phosphorylation;1.22000544151601e-07!GO:0006403;RNA localization;1.47085294944779e-07!GO:0031982;vesicle;1.79450312263574e-07!GO:0031410;cytoplasmic vesicle;1.80809386402564e-07!GO:0051188;cofactor biosynthetic process;2.14824815284753e-07!GO:0016740;transferase activity;2.23905357675113e-07!GO:0031497;chromatin assembly;2.67221367102974e-07!GO:0045333;cellular respiration;2.77591055556239e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.91326369314025e-07!GO:0006754;ATP biosynthetic process;4.32242057796469e-07!GO:0006753;nucleoside phosphate metabolic process;4.32242057796469e-07!GO:0009117;nucleotide metabolic process;4.35370885722048e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.42463739684009e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.92152973303219e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.93705617860701e-07!GO:0016787;hydrolase activity;5.12870233133815e-07!GO:0005788;endoplasmic reticulum lumen;6.36958066761178e-07!GO:0007005;mitochondrion organization and biogenesis;7.25756067613956e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.86208989671195e-07!GO:0032446;protein modification by small protein conjugation;8.88358162168725e-07!GO:0030120;vesicle coat;1.18026169613982e-06!GO:0030662;coated vesicle membrane;1.18026169613982e-06!GO:0016567;protein ubiquitination;1.19010097533371e-06!GO:0005768;endosome;1.27871677700677e-06!GO:0032561;guanyl ribonucleotide binding;1.3530459030522e-06!GO:0019001;guanyl nucleotide binding;1.3530459030522e-06!GO:0048475;coated membrane;1.45919107362865e-06!GO:0030117;membrane coat;1.45919107362865e-06!GO:0031252;leading edge;1.71161139051833e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.72142536739744e-06!GO:0003697;single-stranded DNA binding;2.01566038721405e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.16440072417766e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.35473217185375e-06!GO:0045259;proton-transporting ATP synthase complex;2.8171901144558e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.81727639177208e-06!GO:0006916;anti-apoptosis;3.14448117205092e-06!GO:0051028;mRNA transport;3.34329239884286e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.42644464911021e-06!GO:0006099;tricarboxylic acid cycle;3.52369056140075e-06!GO:0046356;acetyl-CoA catabolic process;3.52369056140075e-06!GO:0043069;negative regulation of programmed cell death;3.75237574090846e-06!GO:0000139;Golgi membrane;4.09874872958647e-06!GO:0007010;cytoskeleton organization and biogenesis;4.19485080399238e-06!GO:0030036;actin cytoskeleton organization and biogenesis;4.46626557379335e-06!GO:0045786;negative regulation of progression through cell cycle;4.64511140031009e-06!GO:0043566;structure-specific DNA binding;5.22133871392236e-06!GO:0031968;organelle outer membrane;5.2743837486272e-06!GO:0043066;negative regulation of apoptosis;5.53683588326039e-06!GO:0009108;coenzyme biosynthetic process;6.35401378697555e-06!GO:0003713;transcription coactivator activity;6.47467290741527e-06!GO:0019867;outer membrane;7.11414776529134e-06!GO:0005667;transcription factor complex;7.43673463932833e-06!GO:0051187;cofactor catabolic process;7.50794245498384e-06!GO:0006084;acetyl-CoA metabolic process;7.70615229534138e-06!GO:0000151;ubiquitin ligase complex;7.87408443436299e-06!GO:0000245;spliceosome assembly;7.88414734680164e-06!GO:0016568;chromatin modification;8.02150886040693e-06!GO:0016853;isomerase activity;8.28924098286997e-06!GO:0003724;RNA helicase activity;8.37323161807297e-06!GO:0003714;transcription corepressor activity;9.20516026393847e-06!GO:0006752;group transfer coenzyme metabolic process;9.95529930036776e-06!GO:0016779;nucleotidyltransferase activity;9.95529930036776e-06!GO:0019899;enzyme binding;1.04019189612613e-05!GO:0005769;early endosome;1.08867590313258e-05!GO:0005819;spindle;1.37980625204778e-05!GO:0016491;oxidoreductase activity;1.38763195941385e-05!GO:0005813;centrosome;1.45569991404433e-05!GO:0051170;nuclear import;1.64668953761927e-05!GO:0004298;threonine endopeptidase activity;1.65247845037219e-05!GO:0043623;cellular protein complex assembly;1.7092378377713e-05!GO:0005773;vacuole;1.72159431387254e-05!GO:0016044;membrane organization and biogenesis;1.78978955142884e-05!GO:0050789;regulation of biological process;2.13921440460377e-05!GO:0051329;interphase of mitotic cell cycle;2.24381246189807e-05!GO:0006613;cotranslational protein targeting to membrane;2.30113213921189e-05!GO:0016564;transcription repressor activity;2.31228030493269e-05!GO:0005762;mitochondrial large ribosomal subunit;2.5612140335634e-05!GO:0000315;organellar large ribosomal subunit;2.5612140335634e-05!GO:0048522;positive regulation of cellular process;2.60400315627491e-05!GO:0005741;mitochondrial outer membrane;2.83741732819408e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.86355648788818e-05!GO:0006606;protein import into nucleus;3.02844012381588e-05!GO:0030029;actin filament-based process;3.17902993905278e-05!GO:0016563;transcription activator activity;3.18614639663506e-05!GO:0051325;interphase;3.21601124210802e-05!GO:0009109;coenzyme catabolic process;3.34297120735214e-05!GO:0051427;hormone receptor binding;3.66010126796461e-05!GO:0065009;regulation of a molecular function;3.71115463458732e-05!GO:0005815;microtubule organizing center;4.11498872404406e-05!GO:0005798;Golgi-associated vesicle;4.57991194180835e-05!GO:0005770;late endosome;5.09129641737467e-05!GO:0045454;cell redox homeostasis;5.26069014937523e-05!GO:0030867;rough endoplasmic reticulum membrane;5.67417388858603e-05!GO:0044440;endosomal part;5.73043325288878e-05!GO:0010008;endosome membrane;5.73043325288878e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.79534815098844e-05!GO:0016859;cis-trans isomerase activity;6.05845407673284e-05!GO:0019843;rRNA binding;6.25734131133608e-05!GO:0005905;coated pit;8.0411118167102e-05!GO:0035257;nuclear hormone receptor binding;8.1891504959278e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.64270399435241e-05!GO:0015399;primary active transmembrane transporter activity;9.64270399435241e-05!GO:0007264;small GTPase mediated signal transduction;9.92892828880048e-05!GO:0007243;protein kinase cascade;0.000107422338098!GO:0008047;enzyme activator activity;0.000113850820194031!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000129858680713447!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000136626658953509!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00014975238365102!GO:0043021;ribonucleoprotein binding;0.000151620515218206!GO:0000323;lytic vacuole;0.000153773774129906!GO:0005764;lysosome;0.000153773774129906!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00015699834767267!GO:0031324;negative regulation of cellular metabolic process;0.000162143147438694!GO:0006091;generation of precursor metabolites and energy;0.000169763177586342!GO:0048471;perinuclear region of cytoplasm;0.000178378826909963!GO:0033116;ER-Golgi intermediate compartment membrane;0.00018129470573548!GO:0003899;DNA-directed RNA polymerase activity;0.000189109482554319!GO:0008654;phospholipid biosynthetic process;0.000208445877973304!GO:0009165;nucleotide biosynthetic process;0.000224474560286047!GO:0008186;RNA-dependent ATPase activity;0.000234600104778657!GO:0000786;nucleosome;0.000268442872201898!GO:0005048;signal sequence binding;0.000293948969558067!GO:0000314;organellar small ribosomal subunit;0.000302724334976614!GO:0005763;mitochondrial small ribosomal subunit;0.000302724334976614!GO:0015980;energy derivation by oxidation of organic compounds;0.000335485995070656!GO:0042802;identical protein binding;0.000335485995070656!GO:0007051;spindle organization and biogenesis;0.000350689182096202!GO:0006612;protein targeting to membrane;0.000357817883770155!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00039236827953173!GO:0005885;Arp2/3 protein complex;0.000406392376776827!GO:0008092;cytoskeletal protein binding;0.000416437765166997!GO:0008632;apoptotic program;0.000450563215107429!GO:0016363;nuclear matrix;0.000556982154475454!GO:0005096;GTPase activator activity;0.000557705138639671!GO:0043681;protein import into mitochondrion;0.000563491820131026!GO:0044452;nucleolar part;0.000576507724951838!GO:0009892;negative regulation of metabolic process;0.000579284026289109!GO:0043492;ATPase activity, coupled to movement of substances;0.000601688146167022!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000650606070219277!GO:0004004;ATP-dependent RNA helicase activity;0.000653468428845005!GO:0006626;protein targeting to mitochondrion;0.000705328789614927!GO:0008250;oligosaccharyl transferase complex;0.000715327419936474!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000809013351784645!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000823221675746888!GO:0006261;DNA-dependent DNA replication;0.000891778739552414!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000959065545386695!GO:0044262;cellular carbohydrate metabolic process;0.000966400919377982!GO:0030880;RNA polymerase complex;0.00099285427743704!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00101255400029547!GO:0051252;regulation of RNA metabolic process;0.0010392969189166!GO:0007006;mitochondrial membrane organization and biogenesis;0.0010392969189166!GO:0051168;nuclear export;0.00106387612552346!GO:0051087;chaperone binding;0.00109603906515099!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00111417542374575!GO:0000075;cell cycle checkpoint;0.00115195350312365!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00115624968000172!GO:0051920;peroxiredoxin activity;0.0011693535543021!GO:0006414;translational elongation;0.00124096785228718!GO:0030659;cytoplasmic vesicle membrane;0.00125201420319025!GO:0000775;chromosome, pericentric region;0.00128136853715368!GO:0008033;tRNA processing;0.00141890563822691!GO:0018196;peptidyl-asparagine modification;0.00145200758395244!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00145200758395244!GO:0006383;transcription from RNA polymerase III promoter;0.00148347315950822!GO:0030133;transport vesicle;0.00153294229369848!GO:0031072;heat shock protein binding;0.00159680829927308!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.001650460572716!GO:0000059;protein import into nucleus, docking;0.00166885032719634!GO:0051789;response to protein stimulus;0.00176691077582318!GO:0006986;response to unfolded protein;0.00176691077582318!GO:0006950;response to stress;0.00188089279956405!GO:0008094;DNA-dependent ATPase activity;0.00192667824664156!GO:0004576;oligosaccharyl transferase activity;0.0019433413075082!GO:0008361;regulation of cell size;0.00195978969622096!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00213766956021826!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00213766956021826!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00213766956021826!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00214846535906091!GO:0000428;DNA-directed RNA polymerase complex;0.00214846535906091!GO:0006402;mRNA catabolic process;0.00215562546650135!GO:0005874;microtubule;0.00222044569558146!GO:0050790;regulation of catalytic activity;0.0023184263233559!GO:0016049;cell growth;0.00234508439786256!GO:0003729;mRNA binding;0.00234508439786256!GO:0044433;cytoplasmic vesicle part;0.00242052499959081!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00251474801955554!GO:0005684;U2-dependent spliceosome;0.00269007420812713!GO:0005791;rough endoplasmic reticulum;0.00272996854665304!GO:0043488;regulation of mRNA stability;0.00287094250813159!GO:0043487;regulation of RNA stability;0.00287094250813159!GO:0030658;transport vesicle membrane;0.00302596477976087!GO:0006897;endocytosis;0.00304869178280282!GO:0010324;membrane invagination;0.00304869178280282!GO:0048518;positive regulation of biological process;0.00312060031549642!GO:0006401;RNA catabolic process;0.00312979291058462!GO:0006289;nucleotide-excision repair;0.0031334401771784!GO:0051101;regulation of DNA binding;0.00318123100529083!GO:0006839;mitochondrial transport;0.00318573510014527!GO:0003682;chromatin binding;0.0032713147863689!GO:0006818;hydrogen transport;0.00338510404968128!GO:0001558;regulation of cell growth;0.00339185114473565!GO:0048500;signal recognition particle;0.00339185114473565!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00339977068555651!GO:0015992;proton transport;0.0034175558643049!GO:0030027;lamellipodium;0.00351800245637904!GO:0003684;damaged DNA binding;0.00351800245637904!GO:0065007;biological regulation;0.00356966838872196!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00357016179487548!GO:0017166;vinculin binding;0.00368660964463043!GO:0035258;steroid hormone receptor binding;0.00386839971813724!GO:0008139;nuclear localization sequence binding;0.00397354444654485!GO:0045941;positive regulation of transcription;0.00408365824545296!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00409905926168415!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00409905926168415!GO:0012506;vesicle membrane;0.00433345550388353!GO:0001568;blood vessel development;0.00439572305474575!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00466114917407952!GO:0048487;beta-tubulin binding;0.00469811958931116!GO:0033673;negative regulation of kinase activity;0.00488332586108904!GO:0006469;negative regulation of protein kinase activity;0.00488332586108904!GO:0005637;nuclear inner membrane;0.00490875399724978!GO:0006891;intra-Golgi vesicle-mediated transport;0.00494435990269092!GO:0005657;replication fork;0.005058067392841!GO:0000082;G1/S transition of mitotic cell cycle;0.0053215154268768!GO:0015631;tubulin binding;0.00535930248938602!GO:0030663;COPI coated vesicle membrane;0.00535930248938602!GO:0030126;COPI vesicle coat;0.00535930248938602!GO:0030118;clathrin coat;0.0053601865105616!GO:0030041;actin filament polymerization;0.00547463607559362!GO:0030134;ER to Golgi transport vesicle;0.00557332560762956!GO:0046474;glycerophospholipid biosynthetic process;0.0058541055978858!GO:0030521;androgen receptor signaling pathway;0.00590385632928622!GO:0051348;negative regulation of transferase activity;0.00590385632928622!GO:0051540;metal cluster binding;0.00590385632928622!GO:0051536;iron-sulfur cluster binding;0.00590385632928622!GO:0006352;transcription initiation;0.00590987623663954!GO:0006509;membrane protein ectodomain proteolysis;0.00596812437191127!GO:0033619;membrane protein proteolysis;0.00596812437191127!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00605070901697164!GO:0045893;positive regulation of transcription, DNA-dependent;0.00607189170642532!GO:0051098;regulation of binding;0.00610870465343458!GO:0030132;clathrin coat of coated pit;0.00616538195007932!GO:0007162;negative regulation of cell adhesion;0.00629738547544016!GO:0030660;Golgi-associated vesicle membrane;0.00630663316801994!GO:0016481;negative regulation of transcription;0.00643962599072859!GO:0007265;Ras protein signal transduction;0.00687507167142926!GO:0004674;protein serine/threonine kinase activity;0.00688147056593712!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00694402142432472!GO:0001944;vasculature development;0.00698574636278713!GO:0022408;negative regulation of cell-cell adhesion;0.0070580638630934!GO:0003678;DNA helicase activity;0.00720950945267314!GO:0008312;7S RNA binding;0.00731034258203513!GO:0030127;COPII vesicle coat;0.00731034258203513!GO:0012507;ER to Golgi transport vesicle membrane;0.00731034258203513!GO:0016197;endosome transport;0.007403008508702!GO:0006595;polyamine metabolic process;0.007436261860342!GO:0003711;transcription elongation regulator activity;0.007436261860342!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00769744913270258!GO:0045047;protein targeting to ER;0.00769744913270258!GO:0030176;integral to endoplasmic reticulum membrane;0.00781466699400001!GO:0007050;cell cycle arrest;0.0081146865913357!GO:0000049;tRNA binding;0.00815494744937743!GO:0001726;ruffle;0.00823830165706277!GO:0007017;microtubule-based process;0.00823830165706277!GO:0045045;secretory pathway;0.00833694311236589!GO:0043284;biopolymer biosynthetic process;0.00834970209820248!GO:0007242;intracellular signaling cascade;0.00837279390781429!GO:0016301;kinase activity;0.00858783217329017!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00870247928141677!GO:0009967;positive regulation of signal transduction;0.00871337278348945!GO:0043022;ribosome binding;0.00871337278348945!GO:0019222;regulation of metabolic process;0.00895150152461891!GO:0005774;vacuolar membrane;0.00900447621098806!GO:0000776;kinetochore;0.00930949706124854!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0095040428436995!GO:0004518;nuclease activity;0.00982906273747152!GO:0043086;negative regulation of catalytic activity;0.00982906273747152!GO:0030137;COPI-coated vesicle;0.00985363353638028!GO:0046489;phosphoinositide biosynthetic process;0.00997901335055825!GO:0007088;regulation of mitosis;0.0100958549772772!GO:0004527;exonuclease activity;0.0104835369040111!GO:0016126;sterol biosynthetic process;0.010512195659969!GO:0006740;NADPH regeneration;0.0107613048556052!GO:0006098;pentose-phosphate shunt;0.0107613048556052!GO:0046483;heterocycle metabolic process;0.0112455884470848!GO:0032508;DNA duplex unwinding;0.0114396669719864!GO:0032392;DNA geometric change;0.0114396669719864!GO:0003690;double-stranded DNA binding;0.011446722027627!GO:0006417;regulation of translation;0.0114698217158874!GO:0008180;signalosome;0.0116885884784845!GO:0051539;4 iron, 4 sulfur cluster binding;0.0117196772768247!GO:0001953;negative regulation of cell-matrix adhesion;0.011720630664281!GO:0006302;double-strand break repair;0.0117601757391501!GO:0030833;regulation of actin filament polymerization;0.011778434829787!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0122680870092625!GO:0019904;protein domain specific binding;0.0126154525907313!GO:0015036;disulfide oxidoreductase activity;0.0127668607220716!GO:0048468;cell development;0.013051771736883!GO:0022415;viral reproductive process;0.0135540727804429!GO:0005832;chaperonin-containing T-complex;0.0135929564936683!GO:0005862;muscle thin filament tropomyosin;0.0136060696759671!GO:0006405;RNA export from nucleus;0.0136722037929071!GO:0006268;DNA unwinding during replication;0.0139214715326195!GO:0005083;small GTPase regulator activity;0.0141525615032487!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0142451149536801!GO:0007052;mitotic spindle organization and biogenesis;0.0142451149536801!GO:0006284;base-excision repair;0.0142567825320047!GO:0030695;GTPase regulator activity;0.0147103879306172!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0147615544623752!GO:0007040;lysosome organization and biogenesis;0.0155778896539751!GO:0005869;dynactin complex;0.0155778896539751!GO:0006310;DNA recombination;0.0158892199996171!GO:0006778;porphyrin metabolic process;0.0158892199996171!GO:0033013;tetrapyrrole metabolic process;0.0158892199996171!GO:0046467;membrane lipid biosynthetic process;0.0160175932045538!GO:0000209;protein polyubiquitination;0.0161803051495736!GO:0003756;protein disulfide isomerase activity;0.0163127051098521!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0163127051098521!GO:0006695;cholesterol biosynthetic process;0.0166554654101047!GO:0000096;sulfur amino acid metabolic process;0.016659578809349!GO:0043065;positive regulation of apoptosis;0.016659578809349!GO:0050662;coenzyme binding;0.01673587200438!GO:0007093;mitotic cell cycle checkpoint;0.0169017660156781!GO:0005092;GDP-dissociation inhibitor activity;0.01706800951846!GO:0008022;protein C-terminus binding;0.0170845858794641!GO:0047485;protein N-terminus binding;0.0171418960648856!GO:0031625;ubiquitin protein ligase binding;0.0174062966787248!GO:0008637;apoptotic mitochondrial changes;0.0178836585172718!GO:0016584;nucleosome positioning;0.0179275432549434!GO:0031901;early endosome membrane;0.0180533817560971!GO:0009112;nucleobase metabolic process;0.0185827077940812!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0186252533574245!GO:0008629;induction of apoptosis by intracellular signals;0.0187824896478982!GO:0003746;translation elongation factor activity;0.0188253136878551!GO:0043068;positive regulation of programmed cell death;0.0190233986293837!GO:0044437;vacuolar part;0.0194891237637719!GO:0032984;macromolecular complex disassembly;0.0195595797890761!GO:0046822;regulation of nucleocytoplasmic transport;0.0195595797890761!GO:0022890;inorganic cation transmembrane transporter activity;0.0196906902032145!GO:0032507;maintenance of cellular protein localization;0.0202030437013116!GO:0043624;cellular protein complex disassembly;0.0203573004249925!GO:0007033;vacuole organization and biogenesis;0.0206199239714883!GO:0048660;regulation of smooth muscle cell proliferation;0.0206376386410255!GO:0031272;regulation of pseudopodium formation;0.0206831622563041!GO:0031269;pseudopodium formation;0.0206831622563041!GO:0031344;regulation of cell projection organization and biogenesis;0.0206831622563041!GO:0031268;pseudopodium organization and biogenesis;0.0206831622563041!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0206831622563041!GO:0031274;positive regulation of pseudopodium formation;0.0206831622563041!GO:0006378;mRNA polyadenylation;0.0208215248047963!GO:0051128;regulation of cellular component organization and biogenesis;0.0208215248047963!GO:0006611;protein export from nucleus;0.0210322622939639!GO:0051052;regulation of DNA metabolic process;0.0211158068366186!GO:0000339;RNA cap binding;0.0219442897513191!GO:0030119;AP-type membrane coat adaptor complex;0.0219695115682132!GO:0008154;actin polymerization and/or depolymerization;0.0224775687559614!GO:0000910;cytokinesis;0.02257846171662!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0227890840958857!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0231003801482776!GO:0007266;Rho protein signal transduction;0.0232399906798457!GO:0043241;protein complex disassembly;0.0233776294536033!GO:0016251;general RNA polymerase II transcription factor activity;0.0235789374681364!GO:0040008;regulation of growth;0.0236890162475596!GO:0031124;mRNA 3'-end processing;0.0241983590880748!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0242765218830374!GO:0051270;regulation of cell motility;0.0245527784322422!GO:0000178;exosome (RNase complex);0.0247125816110474!GO:0000922;spindle pole;0.0256020132961941!GO:0006376;mRNA splice site selection;0.0256020132961941!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0256020132961941!GO:0006650;glycerophospholipid metabolic process;0.0256020132961941!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0257722465918977!GO:0031902;late endosome membrane;0.0259145354462853!GO:0045792;negative regulation of cell size;0.0260513879367927!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0260593194793856!GO:0030308;negative regulation of cell growth;0.0261015914019481!GO:0006497;protein amino acid lipidation;0.026259714063961!GO:0007059;chromosome segregation;0.0263104035666718!GO:0045879;negative regulation of smoothened signaling pathway;0.0263166768186565!GO:0004003;ATP-dependent DNA helicase activity;0.0264759334897897!GO:0035035;histone acetyltransferase binding;0.0265339681833479!GO:0009966;regulation of signal transduction;0.0266665434681842!GO:0042168;heme metabolic process;0.0272938398372239!GO:0005100;Rho GTPase activator activity;0.0273878626470009!GO:0051059;NF-kappaB binding;0.0274689798628772!GO:0045185;maintenance of protein localization;0.0286515179724169!GO:0006338;chromatin remodeling;0.0287317066247978!GO:0007346;regulation of progression through mitotic cell cycle;0.0288138302551418!GO:0008283;cell proliferation;0.0289462769541122!GO:0043433;negative regulation of transcription factor activity;0.0289985817508321!GO:0040011;locomotion;0.029046672063793!GO:0000287;magnesium ion binding;0.0291601292294656!GO:0009303;rRNA transcription;0.0291743320108327!GO:0030518;steroid hormone receptor signaling pathway;0.0297533491313001!GO:0009116;nucleoside metabolic process;0.0302058806238533!GO:0031529;ruffle organization and biogenesis;0.0302216857322051!GO:0003779;actin binding;0.0303895953563273!GO:0009889;regulation of biosynthetic process;0.0303895953563273!GO:0004177;aminopeptidase activity;0.0306412061248967!GO:0051287;NAD binding;0.03093940007796!GO:0030131;clathrin adaptor complex;0.0309889607769687!GO:0050681;androgen receptor binding;0.0314097607194777!GO:0008538;proteasome activator activity;0.0318267296146473!GO:0005669;transcription factor TFIID complex;0.0324324121159225!GO:0005099;Ras GTPase activator activity;0.0325214532983288!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0326372378331772!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0330516177277383!GO:0007044;cell-substrate junction assembly;0.0330685825821686!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0333921077694572!GO:0015002;heme-copper terminal oxidase activity;0.0333921077694572!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0333921077694572!GO:0004129;cytochrome-c oxidase activity;0.0333921077694572!GO:0022407;regulation of cell-cell adhesion;0.0333921077694572!GO:0006520;amino acid metabolic process;0.0341306877906363!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0344522392952439!GO:0005876;spindle microtubule;0.0344729307035988!GO:0031326;regulation of cellular biosynthetic process;0.034496539944135!GO:0001952;regulation of cell-matrix adhesion;0.0345016475230902!GO:0005765;lysosomal membrane;0.0345016475230902!GO:0030384;phosphoinositide metabolic process;0.0356153727246301!GO:0043189;H4/H2A histone acetyltransferase complex;0.0356486248891461!GO:0007034;vacuolar transport;0.0359346373244376!GO:0016311;dephosphorylation;0.0366459751548173!GO:0051651;maintenance of cellular localization;0.0368125142498389!GO:0006144;purine base metabolic process;0.0372757122247201!GO:0051338;regulation of transferase activity;0.0383016180596091!GO:0032981;mitochondrial respiratory chain complex I assembly;0.038405544260572!GO:0010257;NADH dehydrogenase complex assembly;0.038405544260572!GO:0033108;mitochondrial respiratory chain complex assembly;0.038405544260572!GO:0030145;manganese ion binding;0.0384099085887629!GO:0009893;positive regulation of metabolic process;0.0384810943926299!GO:0030125;clathrin vesicle coat;0.0384949128400623!GO:0030665;clathrin coated vesicle membrane;0.0384949128400623!GO:0030911;TPR domain binding;0.0386030948332302!GO:0005758;mitochondrial intermembrane space;0.0393643356350491!GO:0008286;insulin receptor signaling pathway;0.0403907460657253!GO:0009124;nucleoside monophosphate biosynthetic process;0.0406782566612435!GO:0009123;nucleoside monophosphate metabolic process;0.0406782566612435!GO:0000792;heterochromatin;0.0408983317484467!GO:0004680;casein kinase activity;0.0411694181266859!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0413070774871482!GO:0006118;electron transport;0.041454772501934!GO:0040012;regulation of locomotion;0.0416185382652315!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0420358958643445!GO:0043414;biopolymer methylation;0.0420811806525599!GO:0004532;exoribonuclease activity;0.0425429893585891!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0425429893585891!GO:0005784;translocon complex;0.0429131003950401!GO:0046966;thyroid hormone receptor binding;0.0429368409337788!GO:0006790;sulfur metabolic process;0.043036262766502!GO:0031371;ubiquitin conjugating enzyme complex;0.0432729915402665!GO:0030032;lamellipodium biogenesis;0.0434000774175602!GO:0033559;unsaturated fatty acid metabolic process;0.0434000774175602!GO:0006636;unsaturated fatty acid biosynthetic process;0.0434000774175602!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0435263856783294!GO:0016407;acetyltransferase activity;0.0437842769396919!GO:0030433;ER-associated protein catabolic process;0.0448225134597716!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0448225134597716!GO:0035267;NuA4 histone acetyltransferase complex;0.0452622581825698!GO:0006007;glucose catabolic process;0.0454399605821251!GO:0042393;histone binding;0.0456013709161737!GO:0006807;nitrogen compound metabolic process;0.0458483087254966!GO:0022411;cellular component disassembly;0.0458563541282632!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0460690713548543!GO:0051895;negative regulation of focal adhesion formation;0.0462636194656234!GO:0006892;post-Golgi vesicle-mediated transport;0.0468544379294411!GO:0051235;maintenance of localization;0.0468750207603795!GO:0016272;prefoldin complex;0.0473141870182156!GO:0006643;membrane lipid metabolic process;0.0475385075247244!GO:0031418;L-ascorbic acid binding;0.047658817030119!GO:0006516;glycoprotein catabolic process;0.0477688982341412!GO:0048514;blood vessel morphogenesis;0.0482265126003237!GO:0051881;regulation of mitochondrial membrane potential;0.0485670389020411!GO:0005652;nuclear lamina;0.0489343430059439!GO:0000123;histone acetyltransferase complex;0.0493568641069081 | |||
|sample_id=11341 | |sample_id=11341 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=artery | |sample_tissue=artery | ||
|top_motifs=RXR{A,B,G}:2.26117470982;SOX{8,9,10}:1.70104427309;FOX{I1,J2}:1.28684926112;UFEwm:1.27606046994;ARID5B:1.21331223419;ONECUT1,2:1.19751532649;AR:1.18894303467;IKZF1:1.13014456874;NKX2-2,8:1.05900285289;NR3C1:1.04298074304;IKZF2:1.03437493561;NFATC1..3:1.01680790857;TLX1..3_NFIC{dimer}:0.951026050754;SPZ1:0.913334546203;HES1:0.883048061882;ZNF148:0.879217155054;PAX5:0.837596682281;XCPE1{core}:0.830826445851;SOX5:0.762668442652;SOX2:0.715615026377;bHLH_family:0.677740163861;ZIC1..3:0.670025194511;ZNF423:0.65597157896;FOXL1:0.643071900882;FOXM1:0.624482315527;GTF2A1,2:0.616807627386;NFE2L1:0.609481043334;TFAP2{A,C}:0.608604622564;ZBTB6:0.59451514093;PAX6:0.575892401401;HIC1:0.551270939209;TP53:0.496424478163;ELF1,2,4:0.491672415875;EBF1:0.473146565429;KLF4:0.465622113582;FOXD3:0.463665175159;GATA4:0.462264618194;TFDP1:0.441704171287;POU3F1..4:0.438951099452;TFAP4:0.436223616444;PAX1,9:0.435554550422;ETS1,2:0.43235327928;HAND1,2:0.414488626261;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.393752366877;MYB:0.380790258042;GATA6:0.379436545433;PAX8:0.353686177167;ESRRA:0.350766435764;SPIB:0.340320126066;PPARG:0.335850932739;ZFP161:0.29745801145;CDC5L:0.287212921978;GZF1:0.27513317149;ALX4:0.242655562185;PITX1..3:0.229598026968;HNF4A_NR2F1,2:0.228414068249;LHX3,4:0.225124259615;E2F1..5:0.204207373867;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.201822968985;TFAP2B:0.199161333716;ZNF143:0.171331688416;BACH2:0.168876320986;SMAD1..7,9:0.166329009367;EN1,2:0.161851003473;TEAD1:0.144696846949;MTE{core}:0.138833288585;SOX17:0.125009983149;EVI1:0.106443765663;RXRA_VDR{dimer}:0.105253222448;STAT5{A,B}:0.101683368581;HOXA9_MEIS1:0.0983692242129;PATZ1:0.0770837816328;SPI1:0.0755709245731;LMO2:0.0734332989162;REST:0.0647822432071;GCM1,2:0.0437979250582;SP1:0.0406571651361;TEF:0.0204113473533;YY1:0.0153810766203;T:0.0132104305316;SRF:0.00568928724571;STAT2,4,6:0.00489738195301;NR5A1,2:0.000272820301258;LEF1_TCF7_TCF7L1,2:-0.0156504149038;MYOD1:-0.0190810521913;MTF1:-0.0202805570811;TBP:-0.0211952482563;GTF2I:-0.0403074375169;HOX{A5,B5}:-0.0618748315436;FOS_FOS{B,L1}_JUN{B,D}:-0.0690537701366;NFY{A,B,C}:-0.0712105121146;EGR1..3:-0.0795749318434;RBPJ:-0.0844542128922;NFE2:-0.102937677176;POU2F1..3:-0.104916553636;PRDM1:-0.117705448759;FOSL2:-0.122994216267;TFCP2:-0.127700207334;DMAP1_NCOR{1,2}_SMARC:-0.131729146938;ATF6:-0.148561452524;NRF1:-0.150166362914;GFI1B:-0.165232299433;NFE2L2:-0.182698797819;ALX1:-0.191152421363;MZF1:-0.192062243239;AIRE:-0.199912079013;NKX3-2:-0.200763360834;MED-1{core}:-0.203229141189;FOXA2:-0.20386281244;GFI1:-0.217731154729;MAZ:-0.221021169345;ADNP_IRX_SIX_ZHX:-0.23688589183;HBP1_HMGB_SSRP1_UBTF:-0.237220891875;PBX1:-0.237472157199;POU6F1:-0.257967500442;RORA:-0.264115081147;HMGA1,2:-0.272468407276;RREB1:-0.287995402017;PAX4:-0.296543381856;HMX1:-0.323463817407;ESR1:-0.328766724449;NANOG{mouse}:-0.336404805676;NFKB1_REL_RELA:-0.342804483755;TBX4,5:-0.349324806026;NR6A1:-0.349760736978;BPTF:-0.351107771388;HNF1A:-0.366394604211;FOXP3:-0.390264606633;FOXQ1:-0.390385642234;CUX2:-0.399891202717;NHLH1,2:-0.409217171255;GLI1..3:-0.409392604968;ELK1,4_GABP{A,B1}:-0.420698880687;RFX1:-0.4227149441;IRF1,2:-0.429439436437;SNAI1..3:-0.434704751728;OCT4_SOX2{dimer}:-0.438206508642;ZBTB16:-0.444055526072;HSF1,2:-0.472561833731;CRX:-0.512869261596;HLF:-0.521388467371;ZNF238:-0.525619017785;NKX2-1,4:-0.538664204955;NFIL3:-0.548882354343;PRRX1,2:-0.56272396547;BREu{core}:-0.59033417067;RUNX1..3:-0.594403519934;POU1F1:-0.595996936814;IRF7:-0.602447378639;PAX3,7:-0.603458689529;NANOG:-0.618003303277;MEF2{A,B,C,D}:-0.618133487528;MYFfamily:-0.619299640478;SREBF1,2:-0.61971608694;FOXN1:-0.622632921999;NR1H4:-0.630498123142;TLX2:-0.638944223228;EP300:-0.644569206145;ZEB1:-0.647118987583;NKX3-1:-0.656857593601;CREB1:-0.669278205036;JUN:-0.686324235469;XBP1:-0.689111074107;CDX1,2,4:-0.695202081646;PAX2:-0.703052518417;NFIX:-0.706487418086;TOPORS:-0.727192912103;PDX1:-0.731539578437;FOX{F1,F2,J1}:-0.739070086239;FOX{D1,D2}:-0.739539448008;FOXP1:-0.757721746146;DBP:-0.774579241826;ZNF384:-0.775352375995;ATF4:-0.775717562842;CEBPA,B_DDIT3:-0.783651421986;POU5F1:-0.806787686964;TAL1_TCF{3,4,12}:-0.840330045634;HIF1A:-0.880557043101;MAFB:-0.889095794873;ATF2:-0.903829403893;TGIF1:-0.940123996269;AHR_ARNT_ARNT2:-0.979514630777;FOXO1,3,4:-0.994450851504;NKX6-1,2:-1.06142651291;NKX2-3_NKX2-5:-1.07378264923;STAT1,3:-1.09890306204;ATF5_CREB3:-1.12835988102;HOX{A6,A7,B6,B7}:-1.17774475341;MYBL2:-1.18113885175;RFX2..5_RFXANK_RFXAP:-1.20265212414;HOX{A4,D4}:-1.20273245968;VSX1,2:-1.25106645539 | |top_motifs=RXR{A,B,G}:2.26117470982;SOX{8,9,10}:1.70104427309;FOX{I1,J2}:1.28684926112;UFEwm:1.27606046994;ARID5B:1.21331223419;ONECUT1,2:1.19751532649;AR:1.18894303467;IKZF1:1.13014456874;NKX2-2,8:1.05900285289;NR3C1:1.04298074304;IKZF2:1.03437493561;NFATC1..3:1.01680790857;TLX1..3_NFIC{dimer}:0.951026050754;SPZ1:0.913334546203;HES1:0.883048061882;ZNF148:0.879217155054;PAX5:0.837596682281;XCPE1{core}:0.830826445851;SOX5:0.762668442652;SOX2:0.715615026377;bHLH_family:0.677740163861;ZIC1..3:0.670025194511;ZNF423:0.65597157896;FOXL1:0.643071900882;FOXM1:0.624482315527;GTF2A1,2:0.616807627386;NFE2L1:0.609481043334;TFAP2{A,C}:0.608604622564;ZBTB6:0.59451514093;PAX6:0.575892401401;HIC1:0.551270939209;TP53:0.496424478163;ELF1,2,4:0.491672415875;EBF1:0.473146565429;KLF4:0.465622113582;FOXD3:0.463665175159;GATA4:0.462264618194;TFDP1:0.441704171287;POU3F1..4:0.438951099452;TFAP4:0.436223616444;PAX1,9:0.435554550422;ETS1,2:0.43235327928;HAND1,2:0.414488626261;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.393752366877;MYB:0.380790258042;GATA6:0.379436545433;PAX8:0.353686177167;ESRRA:0.350766435764;SPIB:0.340320126066;PPARG:0.335850932739;ZFP161:0.29745801145;CDC5L:0.287212921978;GZF1:0.27513317149;ALX4:0.242655562185;PITX1..3:0.229598026968;HNF4A_NR2F1,2:0.228414068249;LHX3,4:0.225124259615;E2F1..5:0.204207373867;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.201822968985;TFAP2B:0.199161333716;ZNF143:0.171331688416;BACH2:0.168876320986;SMAD1..7,9:0.166329009367;EN1,2:0.161851003473;TEAD1:0.144696846949;MTE{core}:0.138833288585;SOX17:0.125009983149;EVI1:0.106443765663;RXRA_VDR{dimer}:0.105253222448;STAT5{A,B}:0.101683368581;HOXA9_MEIS1:0.0983692242129;PATZ1:0.0770837816328;SPI1:0.0755709245731;LMO2:0.0734332989162;REST:0.0647822432071;GCM1,2:0.0437979250582;SP1:0.0406571651361;TEF:0.0204113473533;YY1:0.0153810766203;T:0.0132104305316;SRF:0.00568928724571;STAT2,4,6:0.00489738195301;NR5A1,2:0.000272820301258;LEF1_TCF7_TCF7L1,2:-0.0156504149038;MYOD1:-0.0190810521913;MTF1:-0.0202805570811;TBP:-0.0211952482563;GTF2I:-0.0403074375169;HOX{A5,B5}:-0.0618748315436;FOS_FOS{B,L1}_JUN{B,D}:-0.0690537701366;NFY{A,B,C}:-0.0712105121146;EGR1..3:-0.0795749318434;RBPJ:-0.0844542128922;NFE2:-0.102937677176;POU2F1..3:-0.104916553636;PRDM1:-0.117705448759;FOSL2:-0.122994216267;TFCP2:-0.127700207334;DMAP1_NCOR{1,2}_SMARC:-0.131729146938;ATF6:-0.148561452524;NRF1:-0.150166362914;GFI1B:-0.165232299433;NFE2L2:-0.182698797819;ALX1:-0.191152421363;MZF1:-0.192062243239;AIRE:-0.199912079013;NKX3-2:-0.200763360834;MED-1{core}:-0.203229141189;FOXA2:-0.20386281244;GFI1:-0.217731154729;MAZ:-0.221021169345;ADNP_IRX_SIX_ZHX:-0.23688589183;HBP1_HMGB_SSRP1_UBTF:-0.237220891875;PBX1:-0.237472157199;POU6F1:-0.257967500442;RORA:-0.264115081147;HMGA1,2:-0.272468407276;RREB1:-0.287995402017;PAX4:-0.296543381856;HMX1:-0.323463817407;ESR1:-0.328766724449;NANOG{mouse}:-0.336404805676;NFKB1_REL_RELA:-0.342804483755;TBX4,5:-0.349324806026;NR6A1:-0.349760736978;BPTF:-0.351107771388;HNF1A:-0.366394604211;FOXP3:-0.390264606633;FOXQ1:-0.390385642234;CUX2:-0.399891202717;NHLH1,2:-0.409217171255;GLI1..3:-0.409392604968;ELK1,4_GABP{A,B1}:-0.420698880687;RFX1:-0.4227149441;IRF1,2:-0.429439436437;SNAI1..3:-0.434704751728;OCT4_SOX2{dimer}:-0.438206508642;ZBTB16:-0.444055526072;HSF1,2:-0.472561833731;CRX:-0.512869261596;HLF:-0.521388467371;ZNF238:-0.525619017785;NKX2-1,4:-0.538664204955;NFIL3:-0.548882354343;PRRX1,2:-0.56272396547;BREu{core}:-0.59033417067;RUNX1..3:-0.594403519934;POU1F1:-0.595996936814;IRF7:-0.602447378639;PAX3,7:-0.603458689529;NANOG:-0.618003303277;MEF2{A,B,C,D}:-0.618133487528;MYFfamily:-0.619299640478;SREBF1,2:-0.61971608694;FOXN1:-0.622632921999;NR1H4:-0.630498123142;TLX2:-0.638944223228;EP300:-0.644569206145;ZEB1:-0.647118987583;NKX3-1:-0.656857593601;CREB1:-0.669278205036;JUN:-0.686324235469;XBP1:-0.689111074107;CDX1,2,4:-0.695202081646;PAX2:-0.703052518417;NFIX:-0.706487418086;TOPORS:-0.727192912103;PDX1:-0.731539578437;FOX{F1,F2,J1}:-0.739070086239;FOX{D1,D2}:-0.739539448008;FOXP1:-0.757721746146;DBP:-0.774579241826;ZNF384:-0.775352375995;ATF4:-0.775717562842;CEBPA,B_DDIT3:-0.783651421986;POU5F1:-0.806787686964;TAL1_TCF{3,4,12}:-0.840330045634;HIF1A:-0.880557043101;MAFB:-0.889095794873;ATF2:-0.903829403893;TGIF1:-0.940123996269;AHR_ARNT_ARNT2:-0.979514630777;FOXO1,3,4:-0.994450851504;NKX6-1,2:-1.06142651291;NKX2-3_NKX2-5:-1.07378264923;STAT1,3:-1.09890306204;ATF5_CREB3:-1.12835988102;HOX{A6,A7,B6,B7}:-1.17774475341;MYBL2:-1.18113885175;RFX2..5_RFXANK_RFXAP:-1.20265212414;HOX{A4,D4}:-1.20273245968;VSX1,2:-1.25106645539 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11341-117F9;search_select_hide=table117:FF:11341-117F9 | |||
}} | }} | ||
Latest revision as of 17:53, 4 June 2020
| Name: | Endothelial Cells - Artery, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11977 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11977
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11977
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.831 |
| 10 | 10 | 0.881 |
| 100 | 100 | 0.753 |
| 101 | 101 | 0.1 |
| 102 | 102 | 0.6 |
| 103 | 103 | 0.299 |
| 104 | 104 | 0.992 |
| 105 | 105 | 0.137 |
| 106 | 106 | 0.0741 |
| 107 | 107 | 0.0188 |
| 108 | 108 | 0.18 |
| 109 | 109 | 0.175 |
| 11 | 11 | 0.203 |
| 110 | 110 | 0.0405 |
| 111 | 111 | 0.411 |
| 112 | 112 | 0.646 |
| 113 | 113 | 0.429 |
| 114 | 114 | 0.341 |
| 115 | 115 | 0.481 |
| 116 | 116 | 0.0806 |
| 117 | 117 | 0.632 |
| 118 | 118 | 0.382 |
| 119 | 119 | 0.66 |
| 12 | 12 | 0.819 |
| 120 | 120 | 0.00104 |
| 121 | 121 | 0.995 |
| 122 | 122 | 0.43 |
| 123 | 123 | 0.0143 |
| 124 | 124 | 0.0374 |
| 125 | 125 | 0.386 |
| 126 | 126 | 0.492 |
| 127 | 127 | 0.923 |
| 128 | 128 | 0.99 |
| 129 | 129 | 0.367 |
| 13 | 13 | 0.318 |
| 130 | 130 | 0.752 |
| 131 | 131 | 0.253 |
| 132 | 132 | 0.185 |
| 133 | 133 | 0.45 |
| 134 | 134 | 0.0985 |
| 135 | 135 | 0.561 |
| 136 | 136 | 0.00902 |
| 137 | 137 | 0.114 |
| 138 | 138 | 0.819 |
| 139 | 139 | 0.759 |
| 14 | 14 | 0.433 |
| 140 | 140 | 0.35 |
| 141 | 141 | 0.537 |
| 142 | 142 | 0.627 |
| 143 | 143 | 0.187 |
| 144 | 144 | 0.396 |
| 145 | 145 | 0.297 |
| 146 | 146 | 0.956 |
| 147 | 147 | 0.0832 |
| 148 | 148 | 0.96 |
| 149 | 149 | 0.0846 |
| 15 | 15 | 0.864 |
| 150 | 150 | 0.0587 |
| 151 | 151 | 0.587 |
| 152 | 152 | 0.0207 |
| 153 | 153 | 0.0201 |
| 154 | 154 | 0.436 |
| 155 | 155 | 0.885 |
| 156 | 156 | 0.233 |
| 157 | 157 | 0.557 |
| 158 | 158 | 0.0396 |
| 159 | 159 | 0.595 |
| 16 | 16 | 0.364 |
| 160 | 160 | 0.06 |
| 161 | 161 | 0.424 |
| 162 | 162 | 0.729 |
| 163 | 163 | 0.91 |
| 164 | 164 | 0.0711 |
| 165 | 165 | 0.326 |
| 166 | 166 | 0.191 |
| 167 | 167 | 0.149 |
| 168 | 168 | 0.368 |
| 169 | 169 | 0.0902 |
| 17 | 17 | 0.244 |
| 18 | 18 | 0.767 |
| 19 | 19 | 0.163 |
| 2 | 2 | 0.535 |
| 20 | 20 | 0.562 |
| 21 | 21 | 0.388 |
| 22 | 22 | 0.348 |
| 23 | 23 | 0.865 |
| 24 | 24 | 0.76 |
| 25 | 25 | 0.458 |
| 26 | 26 | 0.824 |
| 27 | 27 | 0.486 |
| 28 | 28 | 0.135 |
| 29 | 29 | 0.185 |
| 3 | 3 | 0.976 |
| 30 | 30 | 0.684 |
| 31 | 31 | 0.876 |
| 32 | 32 | 0.418 |
| 33 | 33 | 0.762 |
| 34 | 34 | 0.359 |
| 35 | 35 | 0.597 |
| 36 | 36 | 0.364 |
| 37 | 37 | 0.187 |
| 38 | 38 | 0.457 |
| 39 | 39 | 0.353 |
| 4 | 4 | 0.473 |
| 40 | 40 | 0.134 |
| 41 | 41 | 0.202 |
| 42 | 42 | 0.743 |
| 43 | 43 | 0.872 |
| 44 | 44 | 0.0707 |
| 45 | 45 | 0.508 |
| 46 | 46 | 0.393 |
| 47 | 47 | 0.261 |
| 48 | 48 | 0.142 |
| 49 | 49 | 0.278 |
| 5 | 5 | 0.472 |
| 50 | 50 | 0.831 |
| 51 | 51 | 0.555 |
| 52 | 52 | 0.608 |
| 53 | 53 | 0.195 |
| 54 | 54 | 0.854 |
| 55 | 55 | 0.33 |
| 56 | 56 | 0.856 |
| 57 | 57 | 0.986 |
| 58 | 58 | 0.161 |
| 59 | 59 | 0.0162 |
| 6 | 6 | 0.161 |
| 60 | 60 | 1 |
| 61 | 61 | 0.651 |
| 62 | 62 | 0.825 |
| 63 | 63 | 0.563 |
| 64 | 64 | 0.97 |
| 65 | 65 | 0.642 |
| 66 | 66 | 0.568 |
| 67 | 67 | 0.275 |
| 68 | 68 | 0.437 |
| 69 | 69 | 0.086 |
| 7 | 7 | 0.858 |
| 70 | 70 | 0.697 |
| 71 | 71 | 0.977 |
| 72 | 72 | 0.587 |
| 73 | 73 | 5.32496e-4 |
| 74 | 74 | 0.726 |
| 75 | 75 | 0.222 |
| 76 | 76 | 0.795 |
| 77 | 77 | 0.0394 |
| 78 | 78 | 0.292 |
| 79 | 79 | 0.0129 |
| 8 | 8 | 0.0178 |
| 80 | 80 | 0.693 |
| 81 | 81 | 0.573 |
| 82 | 82 | 0.857 |
| 83 | 83 | 0.118 |
| 84 | 84 | 0.0973 |
| 85 | 85 | 0.84 |
| 86 | 86 | 0.995 |
| 87 | 87 | 0.0252 |
| 88 | 88 | 0.59 |
| 89 | 89 | 0.584 |
| 9 | 9 | 0.656 |
| 90 | 90 | 0.705 |
| 91 | 91 | 0.517 |
| 92 | 92 | 0.853 |
| 93 | 93 | 0.162 |
| 94 | 94 | 0.593 |
| 95 | 95 | 0.0249 |
| 96 | 96 | 0.861 |
| 97 | 97 | 0.832 |
| 98 | 98 | 0.766 |
| 99 | 99 | 0.0154 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11977
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000047 human endothelial cell of the artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
