FF:11408-118E4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004870 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004870 | ||
|accession_numbers=CAGE;DRX008103;DRR008975;DRZ000400;DRZ001785;DRZ011750;DRZ013135 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037027;DRR041393;DRZ007035 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001013,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002190,UBERON:0002072,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002521 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000011 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:47279504..47279563,+!p1@NR1H3!2.10!273.20!NR1H3;;chr19:33793430..33793447,-!p1@CEBPA!1.87!292.27!CEBPA;;chr2:239756671..239756732,+!p1@TWIST2!1.85!212.87!TWIST2;;chr7:73038839..73038862,-!p1@MLXIPL!1.82!64.51!MLXIPL;;chr3:126076242..126076257,-!p1@KLF15!1.76!68.95!KLF15;;chr1:170632285..170632309,+!p1@PRRX1!1.71!56.68!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.66!118.58!TWIST1;;chr2:19558373..19558392,-!p1@OSR1!1.60!103.95!OSR1;;chr2:119605214..119605230,-!p1@EN1!1.55!34.74!EN1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.53!33.17!HOXC5;;chr17:17726907..17726958,-!p2@SREBF1!1.51!184.92!SREBF1;;chr8:99956662..99956684,+!p1@OSR2!1.51!47.54!OSR2;;chr2:239756739..239756755,+!p2@TWIST2!1.48!49.36!TWIST2;;chr3:126076264..126076305,-!p2@KLF15!1.48!39.96!KLF15;;chr12:54378923..54378966,+!p1@HOXC10!1.46!27.95!HOXC10;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!24.03!ZBED1;;chr11:113930425..113930471,+!p1@ZBTB16!1.37!32.13!ZBTB16;;chr19:46801639..46801699,+!p1@HIF3A!1.37!22.20!HIF3A;;chr5:158526917..158526932,-!p1@EBF1!1.34!50.67!EBF1;;chr3:12329397..12329433,+!p2@PPARG!1.34!46.75!PPARG;;chr3:12392991..12393030,+!p7@PPARG!1.32!20.11!PPARG;;chr17:46675469..46675481,-!p4@HOXB6!1.32!20.11!HOXB6;;chr3:12330560..12330579,+!p1@PPARG!1.31!22.20!PPARG;;chr17:46675420..46675465,-!p3@HOXB6!1.30!21.94!HOXB6;;chr3:12329358..12329393,+!p3@PPARG!1.28!43.88!PPARG;;chr2:145282041..145282092,-!p8@ZEB2!1.26!25.60!ZEB2;;chr8:25902876..25902936,-!p1@EBF2!1.19!14.63!EBF2;;chr20:39317868..39317884,-!p1@MAFB!1.17!162.46!MAFB;;chr21:47063625..47063658,+!p1@PCBP3!1.17!59.55!PCBP3;;chr2:45236540..45236577,-!p1@SIX2!1.17!13.84!SIX2;;chr12:54422217..54422239,+!p3@HOXC6!1.17!13.84!HOXC6;;chr11:47279568..47279577,+!p8@NR1H3!1.16!13.58!NR1H3;;chr5:76382989..76383001,-!p4@ZBED3!1.16!13.58!ZBED3;;chr5:76383017..76383068,-!p1@ZBED3!1.14!47.27!ZBED3;;chr5:2751762..2751784,-!p1@IRX2!1.14!12.80!IRX2;;chr17:40440481..40440550,+!p1@STAT5A!1.13!90.11!STAT5A;;chr7:27213893..27213954,-!p1@HOXA10!1.13!12.54!HOXA10;;chr3:12392932..12392962,+!p8@PPARG!1.11!12.01!PPARG;;chr7:27224842..27224872,-!p1@HOXA11!1.11!11.75!HOXA11;;chr12:54393880..54393962,+!p1@HOXC9!1.10!11.49!HOXC9;;chr10:119302232..119302265,+!p1@EMX2!1.07!10.71!EMX2;;chr7:19157043..19157088,-!p2@TWIST1!1.06!26.64!TWIST1;;chr7:73038867..73038878,-!p2@MLXIPL!1.04!9.93!MLXIPL;;chr6:391743..391759,+!p1@IRF4!1.03!9.66!IRF4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.02!9.40!HOXC5;;chr15:90294062..90294079,-!p2@MESP1!1.02!9.40!MESP1;;chr5:3595977..3595999,+!p1@IRX1!1.01!9.14!IRX1;;chr19:13134772..13134822,+!p2@NFIX!1.00!13.32!NFIX;;chr14:61116183..61116208,-!p1@SIX1!0.99!34.48!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!0.99!10.19!PRRX1;;chr12:54422245..54422263,+!p7@HOXC6!0.99!8.88!HOXC6;;chr20:51588873..51588953,+!p1@TSHZ2!0.98!11.49!TSHZ2;;chr11:47279248..47279264,+!p3@NR1H3!0.98!9.66!NR1H3;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.62!HOXC10;;chr12:54402745..54402788,+!p1@HOXC8!0.98!8.62!HOXC8;;chr2:145277882..145277967,-!p3@ZEB2!0.97!14.63!ZEB2;;chr22:41763452..41763466,+!p2@TEF!0.97!8.36!TEF;;chr5:76383070..76383117,-!p3@ZBED3!0.96!16.72!ZBED3;;chr5:3595961..3595975,+!p3@IRX1!0.96!8.10!IRX1;;chr12:54772960..54773015,-!p3@ZNF385A!0.95!39.96!ZNF385A;;chr15:42749722..42749739,-!p2@ZFP106!0.95!14.63!ZFP106;;chr5:3595934..3595957,+!p2@IRX1!0.95!7.84!IRX1;;chr1:170633348..170633399,+!p2@PRRX1!0.93!10.45!PRRX1;;chr1:23696348..23696363,-!p4@ZNF436!0.93!8.62!ZNF436;;chrX:106960285..106960299,-!p1@TSC22D3!0.92!203.46!TSC22D3;;chr10:51572408..51572454,+!p3@NCOA4!0.92!44.92!NCOA4;;chr11:46299199..46299233,+!p1@CREB3L1!0.92!39.18!CREB3L1;;chr12:54402790..54402805,+!p2@HOXC8!0.92!7.31!HOXC8;;chr2:175199697..175199706,+!p2@SP9!0.92!7.31!SP9;;chr5:158526459..158526481,-!p2@EBF1!0.91!9.66!EBF1;;chr11:113930401..113930422,+!p3@ZBTB16!0.91!7.05!ZBTB16;;chr12:54422268..54422278,+!p8@HOXC6!0.91!7.05!HOXC6;;chr1:8483878..8483907,-!p4@RERE!0.89!27.69!RERE;;chr11:113930291..113930339,+!p2@ZBTB16!0.88!10.97!ZBTB16;;chr7:27224795..27224840,-!p2@HOXA11!0.86!6.27!HOXA11;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.27!PRRX1;;chr1:23696448..23696453,-!p5@ZNF436!0.85!7.57!ZNF436;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.85!6.53!GLIS1;;chr10:114889016..114889037,+!p15@TCF7L2!0.85!6.01!TCF7L2;;chr1:23696308..23696339,-!p2@ZNF436!0.84!13.06!ZNF436;;chr5:76383133..76383186,-!p2@ZBED3!0.84!12.80!ZBED3;;chr10:114889045..114889074,+!p12@TCF7L2!0.83!5.75!TCF7L2;;chr8:37553292..37553317,+!p1@ZNF703!0.82!141.30!ZNF703;;chr10:63809013..63809041,+!p3@ARID5B!0.82!33.43!ARID5B;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.09!SNAI2;;chr1:158969752..158969780,+!p6@IFI16!0.81!9.93!IFI16;;chr1:165394215..165394226,-!p8@RXRG!0.81!5.48!RXRG;;chr8:49833978..49833996,-!p1@SNAI2!0.80!117.53!SNAI2;;chr16:79634624..79634642,-!p1@MAF!0.80!22.46!MAF;;chr17:40440446..40440464,+!p5@STAT5A!0.79!5.22!STAT5A;;chr17:46690839..46690884,-!p1@HOXB8!0.79!5.22!HOXB8;;chr1:170632115..170632136,+!p9@PRRX1!0.79!5.22!PRRX1;;chr5:2751785..2751808,-!p2@IRX2!0.78!4.96!IRX2;;chr10:119302508..119302559,+!p5@EMX2!0.78!4.96!EMX2;;chr17:40440359..40440386,+!p4@STAT5A!0.78!4.96!STAT5A;;chr17:46675558..46675577,-!p2@HOXB6!0.78!4.96!HOXB6;;chr19:13106214..13106382,+!p1@NFIX!0.77!124.06!NFIX;;chr2:27357446..27357475,-!p2@PREB!0.77!18.54!PREB;;chr6:1610293..1610310,+!p1@FOXC1!0.77!8.62!FOXC1;;chr6:100912785..100912822,-!p1@SIM1!0.76!4.70!SIM1;;chr7:73038889..73038905,-!p3@MLXIPL!0.76!4.70!MLXIPL;;chr2:45236579..45236596,-!p2@SIX2!0.76!4.70!SIX2;;chr1:170632477..170632506,+!p6@PRRX1!0.76!4.70!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!0.76!4.70!HOXB6;;chr10:114886551..114886601,+!p11@TCF7L2!0.76!4.70!TCF7L2;;chr10:71333172..71333186,-!p1@NEUROG3!0.76!4.70!NEUROG3;;chr12:54402729..54402743,+!p3@HOXC8!0.76!4.70!HOXC8;;chr2:28618532..28618610,+!p4@FOSL2!0.75!8.36!FOSL2;;chr13:41240737..41240787,-!p1@FOXO1!0.74!59.29!FOXO1;;chr14:21566731..21566836,-!p1@ZNF219!0.74!53.80!ZNF219;;chr4:4861385..4861398,+!p1@MSX1!0.74!14.63!MSX1;;chr9:132427972..132428056,+!p1@PRRX2!0.74!6.01!PRRX2;;chr10:131762504..131762555,-!p1@EBF3!0.74!4.44!EBF3;;chr12:54779511..54779577,-!p5@ZNF385A!0.74!4.44!ZNF385A;;chr5:158527104..158527135,-!p4@EBF1!0.74!4.44!EBF1;;chr7:27205136..27205164,-!p1@HOXA9!0.74!4.44!HOXA9;;chr2:223163706..223163730,-!p1@PAX3!0.74!4.44!PAX3;;chr1:8483756..8483809,-!p5@RERE!0.73!13.32!RERE;;chr3:157823517..157823562,-!p1@SHOX2!0.73!4.70!SHOX2;;chr9:73029219..73029289,-!p2@KLF9!0.72!14.10!KLF9;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.70!PRRX1;;chr17:17723626..17723663,-!p4@SREBF1!0.71!9.14!SREBF1;;chrX:66763856..66763896,+!p1@AR!0.71!6.27!AR;;chr3:12393032..12393047,+!p15@PPARG!0.71!4.18!PPARG;;chr11:47279491..47279502,+!p6@NR1H3!0.71!4.18!NR1H3;;chr7:27205106..27205134,-!p2@HOXA9!0.71!4.18!HOXA9;;chr16:79633894..79633954,-!p3@MAF!0.70!8.36!MAF;;chr1:6684918..6684936,+!p2@THAP3!0.69!4.96!THAP3;;chr3:12329464..12329472,+!p6@PPARG!0.69!3.92!PPARG;;chr3:12392972..12392983,+!p16@PPARG!0.69!3.92!PPARG;;chr15:90294087..90294115,-!p1@MESP1!0.69!3.92!MESP1;;chrX:106960180..106960197,-!p2@TSC22D3!0.68!16.45!TSC22D3;;chr14:24837368..24837401,+!p1@NFATC4!0.68!9.66!NFATC4;;chr7:44143978..44143989,+!p2@AEBP1!0.68!7.57!AEBP1;;chr13:41240717..41240735,-!p2@FOXO1!0.67!28.99!FOXO1;;chr17:1958388..1958404,+!p1@HIC1!0.67!26.64!HIC1;;chr10:114710244..114710257,+!p3@TCF7L2!0.67!11.23!TCF7L2;;chr17:1959369..1959388,+!p2@HIC1!0.67!10.71!HIC1;;chr10:45495946..45495976,+!p2@ZNF22!0.67!3.66!ZNF22;;chr7:27192185..27192209,-!p1@HOXA3!0.67!3.66!HOXA3;;chr7:27196267..27196311,-!p1@HOXA7!0.67!3.66!HOXA7;;chr1:119530706..119530736,-!p3@TBX15!0.67!3.66!TBX15;;chr1:170632137..170632172,+!p10@PRRX1!0.67!3.66!PRRX1;;chr2:119605374..119605377,-!p7@EN1!0.67!3.66!EN1;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.65!236.11!PCBP4;;chr9:137218281..137218340,+!p1@RXRA!0.65!114.92!RXRA;;chr17:38219209..38219230,+!p1@THRA!0.65!52.76!THRA;;chr7:150946015..150946070,-!p3@SMARCD3!0.65!8.36!SMARCD3;;chr8:48650715..48650735,-!p1@CEBPD!0.64!509.05!CEBPD;;chr3:187463179..187463201,-!p2@BCL6!0.64!16.19!BCL6;;chr5:137804484..137804498,+!p2@EGR1!0.64!15.67!EGR1;;chr17:17726892..17726903,-!p6@SREBF1!0.64!3.92!SREBF1;;chr15:31658288..31658338,+!p4@KLF13!0.64!3.40!KLF13;;chrX:66763914..66763933,+!p3@AR!0.64!3.40!AR;;chr11:113930477..113930488,+!p4@ZBTB16!0.64!3.40!ZBTB16;;chr2:119605233..119605245,-!p8@EN1!0.64!3.40!EN1;;chr2:145271342..145271377,-!p5@ZEB2!0.64!3.40!ZEB2;;chr3:12329339..12329356,+!p5@PPARG!0.64!3.40!PPARG;;chr11:46299539..46299620,+!p2@CREB3L1!0.63!6.01!CREB3L1;;chr9:73028814..73028895,-!p1@KLF9!0.62!37.35!KLF9;;chr11:8102749..8102769,+!p2@TUB!0.62!6.79!TUB;;chr7:113726357..113726443,+!p1@FOXP2!0.62!6.01!FOXP2;;chr16:54964740..54964789,+!p1@IRX5!0.62!4.96!IRX5;;chrX:66763815..66763854,+!p2@AR!0.62!4.44!AR;;chr6:100912752..100912778,-!p2@SIM1!0.62!3.13!SIM1;;chr10:119302645..119302712,+!p3@EMX2!0.62!3.13!EMX2;;chr2:119604456..119604501,-!p2@EN1!0.62!3.13!EN1;;chr2:119605253..119605264,-!p5@EN1!0.62!3.13!EN1;;chr3:12392909..12392921,+!p11@PPARG!0.62!3.13!PPARG;;chr1:170632439..170632465,+!p11@PRRX1!0.62!3.13!PRRX1;;chr7:64467057..64467078,-!p1@ZNF117!0.61!69.74!ZNF117;;chr8:22550982..22550999,-!p1@EGR3!0.61!9.93!EGR3;;chr7:44143925..44143970,+!p1@AEBP1!0.60!81.23!AEBP1;;chr11:64073022..64073056,+!p1@ESRRA!0.60!43.36!ESRRA;;chr22:41777927..41777971,+!p1@TEF!0.60!30.04!TEF;;chr8:128749984..128750033,+!p4@MYC!0.60!12.54!MYC;;chr10:77161133..77161176,-!p3@ZNF503!0.60!7.31!ZNF503;;chr1:8483723..8483752,-!p12@RERE!0.60!4.96!RERE;;chr3:178789522..178789564,-!p2@ZMAT3!0.59!25.86!ZMAT3;;chr15:31618903..31618962,+!p3@KLF13!0.59!9.14!KLF13;;chr7:42276787..42276815,-!p1@GLI3!0.59!8.88!GLI3;;chr9:94186085..94186096,-!p3@NFIL3!0.59!5.22!NFIL3;;chr7:44143997..44144008,+!p3@AEBP1!0.59!3.92!AEBP1;;chr8:72756213..72756243,-!p5@MSC!0.59!3.92!MSC;;chr9:14314476..14314487,-!p9@NFIB!0.59!2.87!NFIB;;chr22:41721853..41721874,+!p6@ZC3H7B!0.59!2.87!ZC3H7B;;chr2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| |expression_enrichment_score=chr11:47279504..47279563,+!p1@NR1H3!2.10!273.20!NR1H3;;chr19:33793430..33793447,-!p1@CEBPA!1.87!292.27!CEBPA;;chr2:239756671..239756732,+!p1@TWIST2!1.85!212.87!TWIST2;;chr7:73038839..73038862,-!p1@MLXIPL!1.82!64.51!MLXIPL;;chr3:126076242..126076257,-!p1@KLF15!1.76!68.95!KLF15;;chr1:170632285..170632309,+!p1@PRRX1!1.71!56.68!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.66!118.58!TWIST1;;chr2:19558373..19558392,-!p1@OSR1!1.60!103.95!OSR1;;chr2:119605214..119605230,-!p1@EN1!1.55!34.74!EN1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.53!33.17!HOXC5;;chr17:17726907..17726958,-!p2@SREBF1!1.51!184.92!SREBF1;;chr8:99956662..99956684,+!p1@OSR2!1.51!47.54!OSR2;;chr2:239756739..239756755,+!p2@TWIST2!1.48!49.36!TWIST2;;chr3:126076264..126076305,-!p2@KLF15!1.48!39.96!KLF15;;chr12:54378923..54378966,+!p1@HOXC10!1.46!27.95!HOXC10;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!24.03!ZBED1;;chr11:113930425..113930471,+!p1@ZBTB16!1.37!32.13!ZBTB16;;chr19:46801639..46801699,+!p1@HIF3A!1.37!22.20!HIF3A;;chr5:158526917..158526932,-!p1@EBF1!1.34!50.67!EBF1;;chr3:12329397..12329433,+!p2@PPARG!1.34!46.75!PPARG;;chr3:12392991..12393030,+!p7@PPARG!1.32!20.11!PPARG;;chr17:46675469..46675481,-!p4@HOXB6!1.32!20.11!HOXB6;;chr3:12330560..12330579,+!p1@PPARG!1.31!22.20!PPARG;;chr17:46675420..46675465,-!p3@HOXB6!1.30!21.94!HOXB6;;chr3:12329358..12329393,+!p3@PPARG!1.28!43.88!PPARG;;chr2:145282041..145282092,-!p8@ZEB2!1.26!25.60!ZEB2;;chr8:25902876..25902936,-!p1@EBF2!1.19!14.63!EBF2;;chr20:39317868..39317884,-!p1@MAFB!1.17!162.46!MAFB;;chr21:47063625..47063658,+!p1@PCBP3!1.17!59.55!PCBP3;;chr2:45236540..45236577,-!p1@SIX2!1.17!13.84!SIX2;;chr12:54422217..54422239,+!p3@HOXC6!1.17!13.84!HOXC6;;chr11:47279568..47279577,+!p8@NR1H3!1.16!13.58!NR1H3;;chr5:76382989..76383001,-!p4@ZBED3!1.16!13.58!ZBED3;;chr5:76383017..76383068,-!p1@ZBED3!1.14!47.27!ZBED3;;chr5:2751762..2751784,-!p1@IRX2!1.14!12.80!IRX2;;chr17:40440481..40440550,+!p1@STAT5A!1.13!90.11!STAT5A;;chr7:27213893..27213954,-!p1@HOXA10!1.13!12.54!HOXA10;;chr3:12392932..12392962,+!p8@PPARG!1.11!12.01!PPARG;;chr7:27224842..27224872,-!p1@HOXA11!1.11!11.75!HOXA11;;chr12:54393880..54393962,+!p1@HOXC9!1.10!11.49!HOXC9;;chr10:119302232..119302265,+!p1@EMX2!1.07!10.71!EMX2;;chr7:19157043..19157088,-!p2@TWIST1!1.06!26.64!TWIST1;;chr7:73038867..73038878,-!p2@MLXIPL!1.04!9.93!MLXIPL;;chr6:391743..391759,+!p1@IRF4!1.03!9.66!IRF4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.02!9.40!HOXC5;;chr15:90294062..90294079,-!p2@MESP1!1.02!9.40!MESP1;;chr5:3595977..3595999,+!p1@IRX1!1.01!9.14!IRX1;;chr19:13134772..13134822,+!p2@NFIX!1.00!13.32!NFIX;;chr14:61116183..61116208,-!p1@SIX1!0.99!34.48!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!0.99!10.19!PRRX1;;chr12:54422245..54422263,+!p7@HOXC6!0.99!8.88!HOXC6;;chr20:51588873..51588953,+!p1@TSHZ2!0.98!11.49!TSHZ2;;chr11:47279248..47279264,+!p3@NR1H3!0.98!9.66!NR1H3;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.62!HOXC10;;chr12:54402745..54402788,+!p1@HOXC8!0.98!8.62!HOXC8;;chr2:145277882..145277967,-!p3@ZEB2!0.97!14.63!ZEB2;;chr22:41763452..41763466,+!p2@TEF!0.97!8.36!TEF;;chr5:76383070..76383117,-!p3@ZBED3!0.96!16.72!ZBED3;;chr5:3595961..3595975,+!p3@IRX1!0.96!8.10!IRX1;;chr12:54772960..54773015,-!p3@ZNF385A!0.95!39.96!ZNF385A;;chr15:42749722..42749739,-!p2@ZFP106!0.95!14.63!ZFP106;;chr5:3595934..3595957,+!p2@IRX1!0.95!7.84!IRX1;;chr1:170633348..170633399,+!p2@PRRX1!0.93!10.45!PRRX1;;chr1:23696348..23696363,-!p4@ZNF436!0.93!8.62!ZNF436;;chrX:106960285..106960299,-!p1@TSC22D3!0.92!203.46!TSC22D3;;chr10:51572408..51572454,+!p3@NCOA4!0.92!44.92!NCOA4;;chr11:46299199..46299233,+!p1@CREB3L1!0.92!39.18!CREB3L1;;chr12:54402790..54402805,+!p2@HOXC8!0.92!7.31!HOXC8;;chr2:175199697..175199706,+!p2@SP9!0.92!7.31!SP9;;chr5:158526459..158526481,-!p2@EBF1!0.91!9.66!EBF1;;chr11:113930401..113930422,+!p3@ZBTB16!0.91!7.05!ZBTB16;;chr12:54422268..54422278,+!p8@HOXC6!0.91!7.05!HOXC6;;chr1:8483878..8483907,-!p4@RERE!0.89!27.69!RERE;;chr11:113930291..113930339,+!p2@ZBTB16!0.88!10.97!ZBTB16;;chr7:27224795..27224840,-!p2@HOXA11!0.86!6.27!HOXA11;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.27!PRRX1;;chr1:23696448..23696453,-!p5@ZNF436!0.85!7.57!ZNF436;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.85!6.53!GLIS1;;chr10:114889016..114889037,+!p15@TCF7L2!0.85!6.01!TCF7L2;;chr1:23696308..23696339,-!p2@ZNF436!0.84!13.06!ZNF436;;chr5:76383133..76383186,-!p2@ZBED3!0.84!12.80!ZBED3;;chr10:114889045..114889074,+!p12@TCF7L2!0.83!5.75!TCF7L2;;chr8:37553292..37553317,+!p1@ZNF703!0.82!141.30!ZNF703;;chr10:63809013..63809041,+!p3@ARID5B!0.82!33.43!ARID5B;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.09!SNAI2;;chr1:158969752..158969780,+!p6@IFI16!0.81!9.93!IFI16;;chr1:165394215..165394226,-!p8@RXRG!0.81!5.48!RXRG;;chr8:49833978..49833996,-!p1@SNAI2!0.80!117.53!SNAI2;;chr16:79634624..79634642,-!p1@MAF!0.80!22.46!MAF;;chr17:40440446..40440464,+!p5@STAT5A!0.79!5.22!STAT5A;;chr17:46690839..46690884,-!p1@HOXB8!0.79!5.22!HOXB8;;chr1:170632115..170632136,+!p9@PRRX1!0.79!5.22!PRRX1;;chr5:2751785..2751808,-!p2@IRX2!0.78!4.96!IRX2;;chr10:119302508..119302559,+!p5@EMX2!0.78!4.96!EMX2;;chr17:40440359..40440386,+!p4@STAT5A!0.78!4.96!STAT5A;;chr17:46675558..46675577,-!p2@HOXB6!0.78!4.96!HOXB6;;chr19:13106214..13106382,+!p1@NFIX!0.77!124.06!NFIX;;chr2:27357446..27357475,-!p2@PREB!0.77!18.54!PREB;;chr6:1610293..1610310,+!p1@FOXC1!0.77!8.62!FOXC1;;chr6:100912785..100912822,-!p1@SIM1!0.76!4.70!SIM1;;chr7:73038889..73038905,-!p3@MLXIPL!0.76!4.70!MLXIPL;;chr2:45236579..45236596,-!p2@SIX2!0.76!4.70!SIX2;;chr1:170632477..170632506,+!p6@PRRX1!0.76!4.70!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!0.76!4.70!HOXB6;;chr10:114886551..114886601,+!p11@TCF7L2!0.76!4.70!TCF7L2;;chr10:71333172..71333186,-!p1@NEUROG3!0.76!4.70!NEUROG3;;chr12:54402729..54402743,+!p3@HOXC8!0.76!4.70!HOXC8;;chr2:28618532..28618610,+!p4@FOSL2!0.75!8.36!FOSL2;;chr13:41240737..41240787,-!p1@FOXO1!0.74!59.29!FOXO1;;chr14:21566731..21566836,-!p1@ZNF219!0.74!53.80!ZNF219;;chr4:4861385..4861398,+!p1@MSX1!0.74!14.63!MSX1;;chr9:132427972..132428056,+!p1@PRRX2!0.74!6.01!PRRX2;;chr10:131762504..131762555,-!p1@EBF3!0.74!4.44!EBF3;;chr12:54779511..54779577,-!p5@ZNF385A!0.74!4.44!ZNF385A;;chr5:158527104..158527135,-!p4@EBF1!0.74!4.44!EBF1;;chr7:27205136..27205164,-!p1@HOXA9!0.74!4.44!HOXA9;;chr2:223163706..223163730,-!p1@PAX3!0.74!4.44!PAX3;;chr1:8483756..8483809,-!p5@RERE!0.73!13.32!RERE;;chr3:157823517..157823562,-!p1@SHOX2!0.73!4.70!SHOX2;;chr9:73029219..73029289,-!p2@KLF9!0.72!14.10!KLF9;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.70!PRRX1;;chr17:17723626..17723663,-!p4@SREBF1!0.71!9.14!SREBF1;;chrX:66763856..66763896,+!p1@AR!0.71!6.27!AR;;chr3:12393032..12393047,+!p15@PPARG!0.71!4.18!PPARG;;chr11:47279491..47279502,+!p6@NR1H3!0.71!4.18!NR1H3;;chr7:27205106..27205134,-!p2@HOXA9!0.71!4.18!HOXA9;;chr16:79633894..79633954,-!p3@MAF!0.70!8.36!MAF;;chr1:6684918..6684936,+!p2@THAP3!0.69!4.96!THAP3;;chr3:12329464..12329472,+!p6@PPARG!0.69!3.92!PPARG;;chr3:12392972..12392983,+!p16@PPARG!0.69!3.92!PPARG;;chr15:90294087..90294115,-!p1@MESP1!0.69!3.92!MESP1;;chrX:106960180..106960197,-!p2@TSC22D3!0.68!16.45!TSC22D3;;chr14:24837368..24837401,+!p1@NFATC4!0.68!9.66!NFATC4;;chr7:44143978..44143989,+!p2@AEBP1!0.68!7.57!AEBP1;;chr13:41240717..41240735,-!p2@FOXO1!0.67!28.99!FOXO1;;chr17:1958388..1958404,+!p1@HIC1!0.67!26.64!HIC1;;chr10:114710244..114710257,+!p3@TCF7L2!0.67!11.23!TCF7L2;;chr17:1959369..1959388,+!p2@HIC1!0.67!10.71!HIC1;;chr10:45495946..45495976,+!p2@ZNF22!0.67!3.66!ZNF22;;chr7:27192185..27192209,-!p1@HOXA3!0.67!3.66!HOXA3;;chr7:27196267..27196311,-!p1@HOXA7!0.67!3.66!HOXA7;;chr1:119530706..119530736,-!p3@TBX15!0.67!3.66!TBX15;;chr1:170632137..170632172,+!p10@PRRX1!0.67!3.66!PRRX1;;chr2:119605374..119605377,-!p7@EN1!0.67!3.66!EN1;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.65!236.11!PCBP4;;chr9:137218281..137218340,+!p1@RXRA!0.65!114.92!RXRA;;chr17:38219209..38219230,+!p1@THRA!0.65!52.76!THRA;;chr7:150946015..150946070,-!p3@SMARCD3!0.65!8.36!SMARCD3;;chr8:48650715..48650735,-!p1@CEBPD!0.64!509.05!CEBPD;;chr3:187463179..187463201,-!p2@BCL6!0.64!16.19!BCL6;;chr5:137804484..137804498,+!p2@EGR1!0.64!15.67!EGR1;;chr17:17726892..17726903,-!p6@SREBF1!0.64!3.92!SREBF1;;chr15:31658288..31658338,+!p4@KLF13!0.64!3.40!KLF13;;chrX:66763914..66763933,+!p3@AR!0.64!3.40!AR;;chr11:113930477..113930488,+!p4@ZBTB16!0.64!3.40!ZBTB16;;chr2:119605233..119605245,-!p8@EN1!0.64!3.40!EN1;;chr2:145271342..145271377,-!p5@ZEB2!0.64!3.40!ZEB2;;chr3:12329339..12329356,+!p5@PPARG!0.64!3.40!PPARG;;chr11:46299539..46299620,+!p2@CREB3L1!0.63!6.01!CREB3L1;;chr9:73028814..73028895,-!p1@KLF9!0.62!37.35!KLF9;;chr11:8102749..8102769,+!p2@TUB!0.62!6.79!TUB;;chr7:113726357..113726443,+!p1@FOXP2!0.62!6.01!FOXP2;;chr16:54964740..54964789,+!p1@IRX5!0.62!4.96!IRX5;;chrX:66763815..66763854,+!p2@AR!0.62!4.44!AR;;chr6:100912752..100912778,-!p2@SIM1!0.62!3.13!SIM1;;chr10:119302645..119302712,+!p3@EMX2!0.62!3.13!EMX2;;chr2:119604456..119604501,-!p2@EN1!0.62!3.13!EN1;;chr2:119605253..119605264,-!p5@EN1!0.62!3.13!EN1;;chr3:12392909..12392921,+!p11@PPARG!0.62!3.13!PPARG;;chr1:170632439..170632465,+!p11@PRRX1!0.62!3.13!PRRX1;;chr7:64467057..64467078,-!p1@ZNF117!0.61!69.74!ZNF117;;chr8:22550982..22550999,-!p1@EGR3!0.61!9.93!EGR3;;chr7:44143925..44143970,+!p1@AEBP1!0.60!81.23!AEBP1;;chr11:64073022..64073056,+!p1@ESRRA!0.60!43.36!ESRRA;;chr22:41777927..41777971,+!p1@TEF!0.60!30.04!TEF;;chr8:128749984..128750033,+!p4@MYC!0.60!12.54!MYC;;chr10:77161133..77161176,-!p3@ZNF503!0.60!7.31!ZNF503;;chr1:8483723..8483752,-!p12@RERE!0.60!4.96!RERE;;chr3:178789522..178789564,-!p2@ZMAT3!0.59!25.86!ZMAT3;;chr15:31618903..31618962,+!p3@KLF13!0.59!9.14!KLF13;;chr7:42276787..42276815,-!p1@GLI3!0.59!8.88!GLI3;;chr9:94186085..94186096,-!p3@NFIL3!0.59!5.22!NFIL3;;chr7:44143997..44144008,+!p3@AEBP1!0.59!3.92!AEBP1;;chr8:72756213..72756243,-!p5@MSC!0.59!3.92!MSC;;chr9:14314476..14314487,-!p9@NFIB!0.59!2.87!NFIB;;chr22:41721853..41721874,+!p6@ZC3H7B!0.59!2.87!ZC3H7B;;chr2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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002521;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001013;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12017.11408-118E4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12017.11408-118E4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12017.11408-118E4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12017.11408-118E4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12017.11408-118E4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11408-118E4 | |id=FF:11408-118E4 | ||
|is_a=EFO:0002091;;FF:0000011 | |is_a=EFO:0002091;;FF:0000011 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12017 | |||
|library_id_phase_based=2:CNhs12017 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11408 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GTGAAA.11408 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11408 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GTGAAA.11408 | |||
|name=Adipocyte - subcutaneous, donor3 | |name=Adipocyte - subcutaneous, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12017,LSID837,release011,COMPLETED | |profile_hcage=CNhs12017,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0595390169710865,0.1007790131153,0.414407354804832,0.155701122972638,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489676694440172,0,0,0,0,0,0.153329068975537,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.475889983493282,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.1007790131153,0,0,0,0.00378665187269442,0,0,-0.097343627213097,0.1007790131153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1007790131153,0,0,0.0175815306511078,0.0423321863034744,0.313144654019151,0.05038950655765,0,0,0.1007790131153,0.00274366187759313,-0.012833718179098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00511330615977085,0,0,0,0.314009385427503,0.483347389850646,0,0,0,0,0,0 | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA803sD-R10a | |rna_catalog_number=CA803sD-R10a | ||
| Line 56: | Line 80: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.18E+06 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.GTGAAA | |||
|sample_age=42 | |sample_age=42 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=ESRRA:2.21306046655;ZNF238:2.09322759199;AR:1.99805925288;XBP1:1.77937167266;IKZF1:1.60203579363;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.44411429746;TFAP4:1.4287376263;GZF1:1.28763341783;ZNF423:1.13311493635;RXR{A,B,G}:1.11154452233;EBF1:1.01837384129;ATF6:1.00569137177;TFCP2:0.995743427019;GFI1B:0.944968778836;HES1:0.907828292877;bHLH_family:0.906700741825;EN1,2:0.809991048691;UFEwm:0.785280815574;STAT2,4,6:0.783474855755;FOXO1,3,4:0.782132004671;NR1H4:0.774701557258;LHX3,4:0.747749110312;NFE2L1:0.735146396644;GCM1,2:0.718113115268;PAX6:0.712545324913;POU6F1:0.710807002653;YY1:0.70884251806;DBP:0.666987158216;ZBTB6:0.656320906212;TLX1..3_NFIC{dimer}:0.644040297411;ALX4:0.643917222026;MYFfamily:0.63069812086;ESR1:0.623035987208;GLI1..3:0.573273213844;HNF4A_NR2F1,2:0.561853917203;GTF2A1,2:0.554482704508;KLF4:0.554146926829;GTF2I:0.526888533604;SPZ1:0.507948952281;MTF1:0.505001628585;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.498377239477;TFAP2{A,C}:0.458934273599;HOX{A5,B5}:0.458526458167;TP53:0.452609790694;FOXD3:0.417013834973;PAX5:0.405026868605;MYBL2:0.393280176855;NKX6-1,2:0.386481665947;PAX1,9:0.378993797457;ZNF148:0.360722749322;NKX2-2,8:0.359823130066;MAFB:0.331361802304;SRF:0.32222224947;MAZ:0.318563193834;TFAP2B:0.316975031809;RXRA_VDR{dimer}:0.297971741541;PDX1:0.292731690242;FOXL1:0.272919013445;TEAD1:0.269924314106;TEF:0.263685808868;GFI1:0.254433068187;NR5A1,2:0.253679248904;PATZ1:0.245352294716;HIC1:0.238897999315;HNF1A:0.225967011606;NHLH1,2:0.194068229391;RORA:0.192961791044;STAT1,3:0.184257243104;TGIF1:0.180123788156;SMAD1..7,9:0.174769495231;HOX{A4,D4}:0.154943779852;PAX4:0.150928037107;REST:0.146414524577;SOX5:0.120106074496;NFIL3:0.113698588677;TOPORS:0.102119424924;MED-1{core}:0.0837760723278;TBP:0.0820081362586;SP1:0.0190302738507;NFATC1..3:0.0120415922148;NFIX:0.00913912347524;PPARG:-0.0294458916599;STAT5{A,B}:-0.0423733060526;HLF:-0.0556057442493;EGR1..3:-0.0636291991947;EP300:-0.0710023128494;HAND1,2:-0.0782302967154;RREB1:-0.0891812018404;HMX1:-0.0939409764265;ZIC1..3:-0.0940097821588;FOXP3:-0.0954251733508;HIF1A:-0.10142918188;MTE{core}:-0.10919216843;CEBPA,B_DDIT3:-0.118419051311;PRRX1,2:-0.142007080836;NRF1:-0.150315104693;GATA4:-0.156114721759;NR6A1:-0.169030547209;NFY{A,B,C}:-0.174528414365;T:-0.186172823496;MZF1:-0.190339500591;NFE2:-0.200863207495;BREu{core}:-0.206419929561;ZNF143:-0.214755541509;ELK1,4_GABP{A,B1}:-0.252355749913;AIRE:-0.265684642601;PBX1:-0.268511208926;NKX2-3_NKX2-5:-0.273091168097;HOXA9_MEIS1:-0.274238602405;NR3C1:-0.282481135501;RBPJ:-0.29260056569;EVI1:-0.32510497108;FOX{D1,D2}:-0.330393337418;AHR_ARNT_ARNT2:-0.332368036177;NFE2L2:-0.337324656221;NKX2-1,4:-0.373129063601;TAL1_TCF{3,4,12}:-0.377135211303;MEF2{A,B,C,D}:-0.380690694256;TLX2:-0.391933502028;SREBF1,2:-0.394733865278;FOSL2:-0.407795231359;XCPE1{core}:-0.421906051155;FOS_FOS{B,L1}_JUN{B,D}:-0.42530440531;ZFP161:-0.429416186955;ATF4:-0.430833018378;FOXM1:-0.444098486664;BACH2:-0.451995090972;ONECUT1,2:-0.464684159221;NFKB1_REL_RELA:-0.49150865423;PAX2:-0.504386628721;RFX2..5_RFXANK_RFXAP:-0.507483073048;GATA6:-0.511824620041;RUNX1..3:-0.514073822921;ADNP_IRX_SIX_ZHX:-0.545953180729;VSX1,2:-0.552402086586;NKX3-2:-0.558599758089;SOX17:-0.59617564056;IRF1,2:-0.601108788923;PRDM1:-0.601332267214;NANOG{mouse}:-0.622813054776;ATF5_CREB3:-0.634248516663;DMAP1_NCOR{1,2}_SMARC:-0.640449757313;SPI1:-0.642629170955;SOX{8,9,10}:-0.645109708564;HSF1,2:-0.648158798894;CRX:-0.648171112558;LEF1_TCF7_TCF7L1,2:-0.698372523067;SPIB:-0.709025363369;TBX4,5:-0.71461898368;HOX{A6,A7,B6,B7}:-0.718468371353;RFX1:-0.74743122324;ZEB1:-0.761785132411;ARID5B:-0.793291271339;ATF2:-0.821396831104;FOXA2:-0.833624934749;ETS1,2:-0.858912551985;HBP1_HMGB_SSRP1_UBTF:-0.868262515544;JUN:-0.884817997017;PAX3,7:-0.889551801994;LMO2:-0.901635987452;ELF1,2,4:-0.906579228883;CUX2:-0.908068309917;CREB1:-0.909097296288;FOXQ1:-0.913821696143;OCT4_SOX2{dimer}:-0.930873699981;POU3F1..4:-0.940622423566;SNAI1..3:-0.960002086965;IRF7:-0.966959002346;ZNF384:-0.987854296733;CDX1,2,4:-0.99936587535;NKX3-1:-1.01121704663;NANOG:-1.03781256093;CDC5L:-1.05310018128;ALX1:-1.08920553864;FOXP1:-1.09293540232;TFDP1:-1.16854140287;IKZF2:-1.19972715178;POU2F1..3:-1.21310691535;MYB:-1.24501046218;MYOD1:-1.27988821437;FOX{F1,F2,J1}:-1.30400436447;PAX8:-1.37106619772;E2F1..5:-1.39203971633;PITX1..3:-1.4278729676;FOXN1:-1.43689033906;POU5F1:-1.46608807331;POU1F1:-1.48213789787;FOX{I1,J2}:-1.50553926426;HMGA1,2:-1.57920794193;ZBTB16:-1.63131994099;SOX2:-1.67984052552;BPTF:-1.71025497687 | |top_motifs=ESRRA:2.21306046655;ZNF238:2.09322759199;AR:1.99805925288;XBP1:1.77937167266;IKZF1:1.60203579363;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.44411429746;TFAP4:1.4287376263;GZF1:1.28763341783;ZNF423:1.13311493635;RXR{A,B,G}:1.11154452233;EBF1:1.01837384129;ATF6:1.00569137177;TFCP2:0.995743427019;GFI1B:0.944968778836;HES1:0.907828292877;bHLH_family:0.906700741825;EN1,2:0.809991048691;UFEwm:0.785280815574;STAT2,4,6:0.783474855755;FOXO1,3,4:0.782132004671;NR1H4:0.774701557258;LHX3,4:0.747749110312;NFE2L1:0.735146396644;GCM1,2:0.718113115268;PAX6:0.712545324913;POU6F1:0.710807002653;YY1:0.70884251806;DBP:0.666987158216;ZBTB6:0.656320906212;TLX1..3_NFIC{dimer}:0.644040297411;ALX4:0.643917222026;MYFfamily:0.63069812086;ESR1:0.623035987208;GLI1..3:0.573273213844;HNF4A_NR2F1,2:0.561853917203;GTF2A1,2:0.554482704508;KLF4:0.554146926829;GTF2I:0.526888533604;SPZ1:0.507948952281;MTF1:0.505001628585;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.498377239477;TFAP2{A,C}:0.458934273599;HOX{A5,B5}:0.458526458167;TP53:0.452609790694;FOXD3:0.417013834973;PAX5:0.405026868605;MYBL2:0.393280176855;NKX6-1,2:0.386481665947;PAX1,9:0.378993797457;ZNF148:0.360722749322;NKX2-2,8:0.359823130066;MAFB:0.331361802304;SRF:0.32222224947;MAZ:0.318563193834;TFAP2B:0.316975031809;RXRA_VDR{dimer}:0.297971741541;PDX1:0.292731690242;FOXL1:0.272919013445;TEAD1:0.269924314106;TEF:0.263685808868;GFI1:0.254433068187;NR5A1,2:0.253679248904;PATZ1:0.245352294716;HIC1:0.238897999315;HNF1A:0.225967011606;NHLH1,2:0.194068229391;RORA:0.192961791044;STAT1,3:0.184257243104;TGIF1:0.180123788156;SMAD1..7,9:0.174769495231;HOX{A4,D4}:0.154943779852;PAX4:0.150928037107;REST:0.146414524577;SOX5:0.120106074496;NFIL3:0.113698588677;TOPORS:0.102119424924;MED-1{core}:0.0837760723278;TBP:0.0820081362586;SP1:0.0190302738507;NFATC1..3:0.0120415922148;NFIX:0.00913912347524;PPARG:-0.0294458916599;STAT5{A,B}:-0.0423733060526;HLF:-0.0556057442493;EGR1..3:-0.0636291991947;EP300:-0.0710023128494;HAND1,2:-0.0782302967154;RREB1:-0.0891812018404;HMX1:-0.0939409764265;ZIC1..3:-0.0940097821588;FOXP3:-0.0954251733508;HIF1A:-0.10142918188;MTE{core}:-0.10919216843;CEBPA,B_DDIT3:-0.118419051311;PRRX1,2:-0.142007080836;NRF1:-0.150315104693;GATA4:-0.156114721759;NR6A1:-0.169030547209;NFY{A,B,C}:-0.174528414365;T:-0.186172823496;MZF1:-0.190339500591;NFE2:-0.200863207495;BREu{core}:-0.206419929561;ZNF143:-0.214755541509;ELK1,4_GABP{A,B1}:-0.252355749913;AIRE:-0.265684642601;PBX1:-0.268511208926;NKX2-3_NKX2-5:-0.273091168097;HOXA9_MEIS1:-0.274238602405;NR3C1:-0.282481135501;RBPJ:-0.29260056569;EVI1:-0.32510497108;FOX{D1,D2}:-0.330393337418;AHR_ARNT_ARNT2:-0.332368036177;NFE2L2:-0.337324656221;NKX2-1,4:-0.373129063601;TAL1_TCF{3,4,12}:-0.377135211303;MEF2{A,B,C,D}:-0.380690694256;TLX2:-0.391933502028;SREBF1,2:-0.394733865278;FOSL2:-0.407795231359;XCPE1{core}:-0.421906051155;FOS_FOS{B,L1}_JUN{B,D}:-0.42530440531;ZFP161:-0.429416186955;ATF4:-0.430833018378;FOXM1:-0.444098486664;BACH2:-0.451995090972;ONECUT1,2:-0.464684159221;NFKB1_REL_RELA:-0.49150865423;PAX2:-0.504386628721;RFX2..5_RFXANK_RFXAP:-0.507483073048;GATA6:-0.511824620041;RUNX1..3:-0.514073822921;ADNP_IRX_SIX_ZHX:-0.545953180729;VSX1,2:-0.552402086586;NKX3-2:-0.558599758089;SOX17:-0.59617564056;IRF1,2:-0.601108788923;PRDM1:-0.601332267214;NANOG{mouse}:-0.622813054776;ATF5_CREB3:-0.634248516663;DMAP1_NCOR{1,2}_SMARC:-0.640449757313;SPI1:-0.642629170955;SOX{8,9,10}:-0.645109708564;HSF1,2:-0.648158798894;CRX:-0.648171112558;LEF1_TCF7_TCF7L1,2:-0.698372523067;SPIB:-0.709025363369;TBX4,5:-0.71461898368;HOX{A6,A7,B6,B7}:-0.718468371353;RFX1:-0.74743122324;ZEB1:-0.761785132411;ARID5B:-0.793291271339;ATF2:-0.821396831104;FOXA2:-0.833624934749;ETS1,2:-0.858912551985;HBP1_HMGB_SSRP1_UBTF:-0.868262515544;JUN:-0.884817997017;PAX3,7:-0.889551801994;LMO2:-0.901635987452;ELF1,2,4:-0.906579228883;CUX2:-0.908068309917;CREB1:-0.909097296288;FOXQ1:-0.913821696143;OCT4_SOX2{dimer}:-0.930873699981;POU3F1..4:-0.940622423566;SNAI1..3:-0.960002086965;IRF7:-0.966959002346;ZNF384:-0.987854296733;CDX1,2,4:-0.99936587535;NKX3-1:-1.01121704663;NANOG:-1.03781256093;CDC5L:-1.05310018128;ALX1:-1.08920553864;FOXP1:-1.09293540232;TFDP1:-1.16854140287;IKZF2:-1.19972715178;POU2F1..3:-1.21310691535;MYB:-1.24501046218;MYOD1:-1.27988821437;FOX{F1,F2,J1}:-1.30400436447;PAX8:-1.37106619772;E2F1..5:-1.39203971633;PITX1..3:-1.4278729676;FOXN1:-1.43689033906;POU5F1:-1.46608807331;POU1F1:-1.48213789787;FOX{I1,J2}:-1.50553926426;HMGA1,2:-1.57920794193;ZBTB16:-1.63131994099;SOX2:-1.67984052552;BPTF:-1.71025497687 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11408-118E4;search_select_hide=table117:FF:11408-118E4 | |||
}} | }} | ||
Latest revision as of 17:58, 4 June 2020
| Name: | Adipocyte - subcutaneous, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12017 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12017
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12017
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.899 |
| 10 | 10 | 0.893 |
| 100 | 100 | 0.374 |
| 101 | 101 | 0.345 |
| 102 | 102 | 0.165 |
| 103 | 103 | 0.406 |
| 104 | 104 | 0.596 |
| 105 | 105 | 0.112 |
| 106 | 106 | 0.938 |
| 107 | 107 | 0.744 |
| 108 | 108 | 0.258 |
| 109 | 109 | 0.882 |
| 11 | 11 | 0.443 |
| 110 | 110 | 0.703 |
| 111 | 111 | 0.863 |
| 112 | 112 | 0.29 |
| 113 | 113 | 0.0234 |
| 114 | 114 | 0.572 |
| 115 | 115 | 0.151 |
| 116 | 116 | 0.335 |
| 117 | 117 | 0.37 |
| 118 | 118 | 0.721 |
| 119 | 119 | 0.786 |
| 12 | 12 | 0.793 |
| 120 | 120 | 0.738 |
| 121 | 121 | 0.731 |
| 122 | 122 | 0.909 |
| 123 | 123 | 0.143 |
| 124 | 124 | 0.388 |
| 125 | 125 | 0.0358 |
| 126 | 126 | 0.932 |
| 127 | 127 | 0.992 |
| 128 | 128 | 0.507 |
| 129 | 129 | 0.332 |
| 13 | 13 | 0.862 |
| 130 | 130 | 0.681 |
| 131 | 131 | 0.664 |
| 132 | 132 | 0.234 |
| 133 | 133 | 0.284 |
| 134 | 134 | 0.578 |
| 135 | 135 | 0.612 |
| 136 | 136 | 0.279 |
| 137 | 137 | 0.171 |
| 138 | 138 | 0.273 |
| 139 | 139 | 0.755 |
| 14 | 14 | 0.405 |
| 140 | 140 | 0.847 |
| 141 | 141 | 0.434 |
| 142 | 142 | 0.58 |
| 143 | 143 | 0.461 |
| 144 | 144 | 0.0605 |
| 145 | 145 | 0.729 |
| 146 | 146 | 0.423 |
| 147 | 147 | 0.942 |
| 148 | 148 | 0.767 |
| 149 | 149 | 0.0991 |
| 15 | 15 | 0.652 |
| 150 | 150 | 0.337 |
| 151 | 151 | 0.99 |
| 152 | 152 | 0.326 |
| 153 | 153 | 0.724 |
| 154 | 154 | 0.145 |
| 155 | 155 | 0.3 |
| 156 | 156 | 0.57 |
| 157 | 157 | 0.375 |
| 158 | 158 | 0.0065 |
| 159 | 159 | 0.208 |
| 16 | 16 | 0.132 |
| 160 | 160 | 0.105 |
| 161 | 161 | 0.906 |
| 162 | 162 | 0.307 |
| 163 | 163 | 0.725 |
| 164 | 164 | 0.209 |
| 165 | 165 | 0.578 |
| 166 | 166 | 0.788 |
| 167 | 167 | 0.786 |
| 168 | 168 | 0.539 |
| 169 | 169 | 0.0157 |
| 17 | 17 | 0.668 |
| 18 | 18 | 0.821 |
| 19 | 19 | 4.78837e-4 |
| 2 | 2 | 0.286 |
| 20 | 20 | 0.953 |
| 21 | 21 | 0.0685 |
| 22 | 22 | 0.0391 |
| 23 | 23 | 0.632 |
| 24 | 24 | 0.627 |
| 25 | 25 | 0.435 |
| 26 | 26 | 0.255 |
| 27 | 27 | 0.351 |
| 28 | 28 | 0.0329 |
| 29 | 29 | 0.58 |
| 3 | 3 | 0.695 |
| 30 | 30 | 0.393 |
| 31 | 31 | 0.169 |
| 32 | 32 | 0.0343 |
| 33 | 33 | 0.591 |
| 34 | 34 | 0.469 |
| 35 | 35 | 0.849 |
| 36 | 36 | 0.117 |
| 37 | 37 | 0.257 |
| 38 | 38 | 0.592 |
| 39 | 39 | 0.167 |
| 4 | 4 | 0.78 |
| 40 | 40 | 0.586 |
| 41 | 41 | 0.39 |
| 42 | 42 | 0.289 |
| 43 | 43 | 0.455 |
| 44 | 44 | 0.679 |
| 45 | 45 | 0.589 |
| 46 | 46 | 0.925 |
| 47 | 47 | 0.854 |
| 48 | 48 | 0.602 |
| 49 | 49 | 0.985 |
| 5 | 5 | 0.856 |
| 50 | 50 | 0.48 |
| 51 | 51 | 0.626 |
| 52 | 52 | 0.574 |
| 53 | 53 | 0.296 |
| 54 | 54 | 0.792 |
| 55 | 55 | 0.688 |
| 56 | 56 | 0.565 |
| 57 | 57 | 0.665 |
| 58 | 58 | 0.554 |
| 59 | 59 | 0.32 |
| 6 | 6 | 0.52 |
| 60 | 60 | 0.853 |
| 61 | 61 | 0.486 |
| 62 | 62 | 0.555 |
| 63 | 63 | 0.208 |
| 64 | 64 | 0.917 |
| 65 | 65 | 0.289 |
| 66 | 66 | 0.137 |
| 67 | 67 | 0.967 |
| 68 | 68 | 0.0487 |
| 69 | 69 | 0.335 |
| 7 | 7 | 0.681 |
| 70 | 70 | 0.918 |
| 71 | 71 | 0.83 |
| 72 | 72 | 0.958 |
| 73 | 73 | 0.0529 |
| 74 | 74 | 0.919 |
| 75 | 75 | 0.519 |
| 76 | 76 | 0.676 |
| 77 | 77 | 0.0239 |
| 78 | 78 | 0.487 |
| 79 | 79 | 0.711 |
| 8 | 8 | 0.122 |
| 80 | 80 | 0.317 |
| 81 | 81 | 0.915 |
| 82 | 82 | 0.142 |
| 83 | 83 | 0.508 |
| 84 | 84 | 0.476 |
| 85 | 85 | 0.152 |
| 86 | 86 | 0.768 |
| 87 | 87 | 0.0543 |
| 88 | 88 | 0.516 |
| 89 | 89 | 0.171 |
| 9 | 9 | 0.314 |
| 90 | 90 | 0.128 |
| 91 | 91 | 0.413 |
| 92 | 92 | 0.524 |
| 93 | 93 | 0.413 |
| 94 | 94 | 0.566 |
| 95 | 95 | 0.901 |
| 96 | 96 | 0.656 |
| 97 | 97 | 0.708 |
| 98 | 98 | 0.347 |
| 99 | 99 | 0.0456 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12017
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002521 (subcutaneous fat cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001013 (adipose tissue)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002190 (subcutaneous adipose tissue)
0002072 (hypodermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000011 (human subcutaneous adipocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
