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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001637,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0005291,UBERON:0003509,UBERON:0000487,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0006598,UBERON:0007798,UBERON:0004852,UBERON:0002532,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0004872,UBERON:0006965
|DRA_sample_Accession=CAGE@SAMD00005046
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000115,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000071,CL:1000413,CL:0000222,CL:0002546
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005046
|accession_numbers=CAGE;DRX008222;DRR009094;DRZ000519;DRZ001904;DRZ011869;DRZ013254
|accession_numbers_RNASeq=sRNA-Seq;DRX037050;DRR041416;DRZ007058
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000001
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.13!174.51!SOX18;;chr8:55370487..55370503,+!p1@SOX17!2.13!133.76!SOX17;;chr21:39870339..39870443,-!p1@ERG!2.08!118.08!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.83!66.67!SOX7;;chr17:6926362..6926377,+!p1@BCL6B!1.75!55.59!BCL6B;;chr6:34204921..34204939,+!p3@HMGA1!1.64!1197.12!HMGA1;;chr19:13213511..13213545,-!p2@LYL1!1.60!42.22!LYL1;;chr1:6479968..6479986,-!p1@HES2!1.54!34.07!HES2;;chr18:53068911..53068935,-!p4@TCF4!1.42!28.63!TCF4;;chr12:96588368..96588394,+!p3@ELK3!1.34!54.76!ELK3;;chr6:126070769..126070801,+!p1@HEY2!1.29!21.11!HEY2;;chr19:13213399..13213414,-!p6@LYL1!1.20!14.84!LYL1;;chr19:13213662..13213686,-!p1@LYL1!1.18!20.69!LYL1;;chr16:86600426..86600441,+!p1@FOXC2!1.11!29.68!FOXC2;;chr10:94449703..94449718,+!p1@HHEX!1.08!42.63!HHEX;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.70!BNC1;;chr17:46655672..46655697,-!p3@HOXB4!1.03!9.61!HOXB4;;chr2:177053386..177053402,+!p1@HOXD1!1.03!9.61!HOXD1;;chr19:46801639..46801699,+!p1@HIF3A!1.02!9.40!HIF3A;;chr20:42543441..42543497,+!p1@TOX2!1.01!42.43!TOX2;;chr11:65667884..65667895,-!p2@FOSL1!0.99!35.11!FOSL1;;chr12:66218255..66218304,+!p3@HMGA2!0.99!24.24!HMGA2;;chr3:128206762..128206781,-!p2@GATA2!0.98!54.34!GATA2;;chr6:34204672..34204692,+!p1@HMGA1!0.97!966.81!HMGA1;;chr3:168864315..168864339,-!p2@MECOM!0.97!13.79!MECOM;;chr4:174451370..174451387,-!p1@HAND2!0.97!8.36!HAND2;;chr11:65429891..65429915,-!p7@RELA!0.96!8.15!RELA;;chr19:13213555..13213568,-!p5@LYL1!0.94!7.73!LYL1;;chr22:19748231..19748317,+!p1@TBX1!0.93!7.52!TBX1;;chr20:42543506..42543549,+!p2@TOX2!0.92!17.97!TOX2;;chr18:19749541..19749557,+!p1@GATA6!0.91!22.99!GATA6;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.11!KDM5D;;chr8:11561684..11561751,+!p1@GATA4!0.90!6.90!GATA4;;chr10:31288370..31288393,-!p3@ZNF438!0.89!6.69!ZNF438;;chr2:237077022..237077038,-!p1@GBX2!0.89!6.69!GBX2;;chr3:169381420..169381535,-!p1@MECOM!0.88!7.73!MECOM;;chr1:209979467..209979494,-!p1@IRF6!0.87!7.31!IRF6;;chr7:115670804..115670825,-!p1@TFEC!0.87!6.48!TFEC;;chr20:42295745..42295765,+!p1@MYBL2!0.86!108.68!MYBL2;;chr11:65430554..65430579,-!p3@RELA!0.85!16.30!RELA;;chr12:66218212..66218244,+!p5@HMGA2!0.85!8.99!HMGA2;;chr9:16705069..16705086,-!p3@BNC2!0.85!6.06!BNC2;;chr11:65667846..65667868,-!p1@FOSL1!0.83!164.90!FOSL1;;chr7:35293685..35293718,-!p1@TBX20!0.82!5.64!TBX20;;chr12:124873357..124873401,-!p1@NCOR2!0.79!65.42!NCOR2;;chr17:41623692..41623715,-!p1@ETV4!0.79!24.03!ETV4;;chr17:46655704..46655718,-!p2@HOXB4!0.79!7.94!HOXB4;;chr20:6748325..6748352,+!p1@BMP2!0.79!7.73!BMP2;;chr4:174450089..174450153,-!p2@HAND2!0.78!5.02!HAND2;;chr7:26191809..26191890,+!p1@NFE2L3!0.76!25.50!NFE2L3;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.61!HMGA2;;chr19:53496768..53496799,-!p1@ZNF702P!0.76!7.73!ZNF702P;;chr18:22932080..22932170,-!p1@ZNF521!0.74!20.90!ZNF521;;chr20:42295713..42295738,+!p2@MYBL2!0.73!28.63!MYBL2;;chr19:13213465..13213478,-!p7@LYL1!0.73!4.39!LYL1;;chr2:85360499..85360598,+!p1@TCF7L1!0.71!25.71!TCF7L1;;chr4:57522166..57522260,-!p2@HOPX!0.71!4.81!HOPX;;chr10:94449675..94449694,+!p2@HHEX!0.70!11.91!HHEX;;chr7:139741594..139741615,-!p5@PARP12!0.70!3.97!PARP12;;chr3:178789522..178789564,-!p2@ZMAT3!0.68!31.77!ZMAT3;;chr12:3069037..3069119,+!p2@TEAD4!0.68!14.84!TEAD4;;chr6:28321971..28321995,-!p1@ZNF323!0.68!3.76!ZNF323;;chr17:6926381..6926392,+!p2@BCL6B!0.68!3.76!BCL6B;;chr1:8938709..8938720,-!p3@ENO1!0.67!206.91!ENO1;;chr9:14314131..14314147,-!p2@NFIB!0.67!23.41!NFIB;;chr5:92918919..92918942,+!p1@NR2F1!0.67!18.81!NR2F1;;chr12:66218598..66218645,+!p2@HMGA2!0.66!18.81!HMGA2;;chr14:74256787..74256858,-!p6@C14orf43!0.66!3.55!C14orf43;;chr2:237076992..237077008,-!p2@GBX2!0.66!3.55!GBX2;;chr3:168864383..168864400,-!p7@MECOM!0.66!3.55!MECOM;;chr2:46524537..46524553,+!p1@EPAS1!0.65!400.64!EPAS1;;chr20:48599506..48599526,+!p1@SNAI1!0.65!25.71!SNAI1;;chr11:65686732..65686756,+!p2@DRAP1!0.64!16.30!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.64!5.43!ETV4;;chr4:57522598..57522664,-!p3@HOPX!0.64!3.34!HOPX;;chr1:47695003..47695042,-!p2@TAL1!0.64!3.34!TAL1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.63!275.04!TAX1BP3;;chr18:19749386..19749404,+!p2@GATA6!0.63!5.02!GATA6;;chr3:168865194..168865245,-!p3@MECOM!0.63!4.39!MECOM;;chr11:65686802..65686818,+!p6@DRAP1!0.62!6.06!DRAP1;;chrY:2803415..2803468,+!p1@ZFY!0.62!3.13!ZFY;;chr7:27205106..27205134,-!p2@HOXA9!0.62!3.13!HOXA9;;chr18:53177984..53178004,-!p17@TCF4!0.62!3.13!TCF4;;chr8:106330656..106330684,+!p1@ZFPM2!0.61!9.20!ZFPM2;;chr18:53257001..53257015,-!p5@TCF4!0.61!5.85!TCF4;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.43!ETV4;;chr19:45908292..45908374,-!p1@PPP1R13L!0.60!31.77!PPP1R13L;;chr19:49865646..49865718,-!p1@TEAD2!0.60!30.72!TEAD2;;chr2:46602879..46602899,+!p8@EPAS1!0.60!3.76!EPAS1;;chr11:62368696..62368759,-!p4@MTA2!0.59!21.74!MTA2;;chr22:38597987..38598021,+!p2@MAFF!0.59!21.11!MAFF;;chr13:72441315..72441454,-!p1@DACH1!0.59!6.48!DACH1;;chr17:41623667..41623682,-!p8@ETV4!0.59!3.13!ETV4;;chr17:8027418..8027432,-!p1@HES7!0.59!2.93!HES7;;chr3:128212033..128212051,-!p1@GATA2!0.59!2.93!GATA2;;chr6:126070748..126070768,+!p2@HEY2!0.59!2.93!HEY2;;chr16:29819446..29819471,+!p9@MAZ!0.58!9.82!MAZ;;chr2:74730430..74730451,-!p1@LBX2!0.58!5.02!LBX2;;chr11:65430535..65430549,-!p4@RELA!0.58!3.34!RELA;;chr4:57522674..57522699,-!p5@HOPX!0.57!2.72!HOPX;;chr7:27196267..27196311,-!p1@HOXA7!0.57!2.72!HOXA7;;chr12:3068544..3068597,+!p1@TEAD4!0.56!19.44!TEAD4;;chr6:34204973..34204990,+!p4@HMGA1!0.55!43.26!HMGA1;;chr11:47236584..47236679,+!p1@DDB2!0.55!35.11!DDB2;;chr12:2986275..2986363,-!p1@FOXM1!0.55!32.19!FOXM1;;chr17:38498594..38498661,+!p2@RARA!0.55!10.24!RARA;;chr15:90544532..90544563,+!p1@ZNF710!0.55!5.85!ZNF710;;chr1:221053049..221053075,+!p3@HLX!0.55!5.02!HLX;;chr16:30406423..30406447,+!p4@ZNF48!0.55!2.51!ZNF48;;chr14:29235961..29236008,+!p1@FOXG1!0.55!2.51!FOXG1;;chr11:128563948..128564003,+!p1@FLI1!0.54!37.83!FLI1;;chr7:149470641..149470694,-!p1@ZNF467!0.54!13.79!ZNF467;;chr12:3068466..3068495,+!p3@TEAD4!0.54!6.27!TEAD4;;chr2:239756739..239756755,+!p2@TWIST2!0.54!4.81!TWIST2;;chr12:66218152..66218174,+!p10@HMGA2!0.54!2.72!HMGA2;;chr12:124873852..124873881,-!p3@NCOR2!0.53!18.18!NCOR2;;chr11:65687362..65687436,+!p3@DRAP1!0.53!13.38!DRAP1;;chr8:60031619..60031676,-!p1@TOX!0.53!6.06!TOX;;chr4:146402843..146402864,+!p3@SMAD1!0.53!5.43!SMAD1;;chr2:231280954..231280965,+!p2@SP100!0.53!5.02!SP100;;chr12:66218378..66218401,+!p6@HMGA2!0.53!4.18!HMGA2;;chr1:221052733..221052749,+!p2@HLX!0.53!3.34!HLX;;chr5:92918956..92918969,+!p4@NR2F1!0.53!2.72!NR2F1;;chr14:74226961..74227020,-!p1@C14orf43!0.52!19.23!C14orf43;;chr3:141087393..141087426,+!p3@ZBTB38!0.52!11.49!ZBTB38;;chr1:204042723..204042784,+!p3@SOX13!0.52!4.39!SOX13;;chr8:55370720..55370733,+!p2@SOX17!0.52!2.30!SOX17;;chr18:53068982..53068993,-!p20@TCF4!0.52!2.30!TCF4;;chr4:2263809..2263854,-!p1@MXD4!0.51!113.28!MXD4;;chr9:14314566..14314618,-!p1@NFIB!0.51!35.32!NFIB;;chr15:57211634..57211657,+!p5@TCF12!0.51!3.76!TCF12;;chr11:47237922..47237964,+!p4@DDB2!0.51!2.72!DDB2;;chr17:1958388..1958404,+!p1@HIC1!0.50!17.97!HIC1;;chr1:8934931..8934947,-!p4@ENO1!0.50!8.99!ENO1;;chr14:75988771..75988826,+!p1@BATF!0.50!3.13!BATF;;chr1:221052994..221053008,+!p6@HLX!0.50!2.72!HLX;;chr12:66218836..66218888,+!p1@HMGA2!0.49!25.92!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.49!16.30!FOXM1;;chr1:221052776..221052799,+!p1@HLX!0.49!4.39!HLX;;chr9:14314106..14314119,-!p5@NFIB!0.49!4.39!NFIB;;chr12:3068501..3068515,+!p4@TEAD4!0.49!4.18!TEAD4;;chr15:96876966..96877017,+!p12@NR2F2!0.49!3.34!NR2F2;;chr15:83953373..83953386,-!p2@BNC1!0.49!2.09!BNC1;;chr18:53068893..53068902,-!p28@TCF4!0.49!2.09!TCF4;;chr20:62670299..62670342,-!p8@ZNF512B!0.49!2.09!ZNF512B;;chr11:128562372..128562397,+!p4@FLI1!0.49!2.09!FLI1;;chr11:19262421..19262455,-!p3@E2F8!0.49!2.09!E2F8;;chr5:92918768..92918783,+!p8@NR2F1!0.49!2.09!NR2F1;;chr7:139741849..139741879,-!p12@PARP12!0.49!2.09!PARP12;;chr8:10588174..10588200,-!p3@SOX7!0.49!2.09!SOX7;;chr17:7590797..7590815,-!p1@TP53!0.48!120.38!TP53;;chr11:62369229..62369289,-!p2@MTA2!0.48!39.50!MTA2;;chr11:62369108..62369183,-!p3@MTA2!0.48!35.11!MTA2;;chr16:2059754..2059777,-!p2@ZNF598!0.48!8.99!ZNF598;;chr15:66994561..66994597,+!p2@SMAD6!0.48!5.85!SMAD6;;chr18:19749517..19749531,+!p3@GATA6!0.48!4.18!GATA6;;chr10:31288398..31288455,-!p2@ZNF438!0.48!2.51!ZNF438;;chr1:158979792..158979814,+!p2@IFI16!0.47!25.29!IFI16;;chr6:20402102..20402152,+!p1@E2F3!0.47!10.45!E2F3;;chr19:1652555..1652568,-!p2@TCF3!0.47!10.45!TCF3;;chr1:45805872..45805900,+!p2@TOE1!0.47!5.85!TOE1;;chr20:50721803..50721857,-!p2@ZFP64!0.47!3.55!ZFP64;;chr8:106330696..106330719,+!p2@ZFPM2!0.47!2.72!ZFPM2;;chr17:41622834..41622883,-!p6@ETV4!0.47!2.51!ETV4;;chr12:10875831..10876025,-!p1@CSDA!0.46!216.73!CSDA;;chr6:21593973..21593988,+!p1@SOX4!0.46!93.84!SOX4;;chr6:130339710..130339745,+!p1@L3MBTL3!0.46!20.48!L3MBTL3;;chr14:73360799..73360817,-!p1@DPF3!0.46!8.57!DPF3;;chr5:321810..321877,+!p1@AHRR!0.46!7.73!AHRR;;chr12:10875351..10875422,-!p4@CSDA!0.46!4.39!CSDA;;chr15:57211660..57211687,+!p6@TCF12!0.46!3.55!TCF12;;chr17:41622765..41622821,-!p2@ETV4!0.46!3.34!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.46!3.34!HOXB2;;chr19:49864746..49864780,-!p2@TEAD2!0.46!2.93!TEAD2;;chr2:46612334..46612349,+!p6@EPAS1!0.46!2.72!EPAS1;;chr3:170076314..170076334,+!p2@SKIL!0.46!2.72!SKIL;;chr5:71803177..71803255,-!p1@ZNF366!0.46!1.88!ZNF366;;chr16:86600870..86600921,+!p2@FOXC2!0.46!1.88!FOXC2;;chr17:41622731..41622764,-!p5@ETV4!0.46!1.88!ETV4;;chr19:13213496..13213501,-!p10@LYL1!0.46!1.88!LYL1;;chr12:66218904..66218913,+!p11@HMGA2!0.46!1.88!HMGA2;;chr1:8938736..8938756,-!p1@ENO1!0.45!2851.32!ENO1;;chr19:1863568..1863586,-!p1@KLF16!0.45!84.64!KLF16;;chr8:128748308..128748324,+!p2@MYC!0.45!70.43!MYC;;chr6:1610293..1610310,+!p1@FOXC1!0.45!3.55!FOXC1;;chr17:41623075..41623101,-!p9@ETV4!0.45!2.30!ETV4;;chr1:151032860..151032918,+!p1@MLLT11!0.44!29.47!MLLT11;;chr5:138609782..138609826,+!p5@MATR3!0.44!15.67!MATR3;;chr16:1429627..1429662,-!p2@UNKL!0.44!6.69!UNKL;;chr1:156470494..156470505,-!p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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000413;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0002546,CL:0000222
|fonse_cell_line=
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|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
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|has_quality=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg38.nobarcode.ctss.bed.gz
|id=FF:11413-118E9
|id=FF:11413-118E9
|is_a=EFO:0002091;;FF:0000002;;FF:0000047;;FF:0000210
|is_a=EFO:0002091;;FF:0000047
|is_obsolete=
|library_id=CNhs12023
|library_id_phase_based=2:CNhs12023
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11413
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTGGCC.11413
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11413
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTGGCC.11413
|name=Endothelial Cells - Artery, donor3
|name=Endothelial Cells - Artery, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
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|profile_cagescan=,,,
|profile_hcage=CNhs12023,LSID837,release011,COMPLETED
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|profile_rnaseq=,,,
|profile_rnaseq=
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|rna_box=118
|rna_box=118
|rna_catalog_number=CA300-R10a
|rna_catalog_number=CA300-R10a
Line 54: Line 80:
|rna_rin=
|rna_rin=
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=118E9
|rna_tube_id=1.18E+11
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10004.GTGGCC
|sample_age=53
|sample_age=53
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 77: Line 105:
|sample_tissue=artery
|sample_tissue=artery
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|top_motifs=SOX{8,9,10}:1.95099988601;RXR{A,B,G}:1.49499664017;AR:1.1609403387;bHLH_family:1.11442761773;TLX1..3_NFIC{dimer}:1.09970838498;NFATC1..3:1.02519653877;POU3F1..4:0.864444764919;GATA6:0.842282802017;TFAP2{A,C}:0.824571730609;IKZF1:0.787925849752;ELF1,2,4:0.781599589466;FOX{I1,J2}:0.77510008081;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.753098346849;GTF2A1,2:0.722554623435;ETS1,2:0.69519219879;TFDP1:0.67940749894;PAX8:0.670491739292;TFAP4:0.665341622928;HES1:0.660311966352;PAX6:0.659703073497;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.655035340254;NFE2L1:0.632093920502;SOX2:0.627761392809;ZNF148:0.603762749664;XCPE1{core}:0.598222338231;TP53:0.589676910423;ONECUT1,2:0.563930003273;YY1:0.56145655705;LEF1_TCF7_TCF7L1,2:0.522355989661;SOX5:0.519941324327;PAX5:0.510398088442;NR3C1:0.46679346107;E2F1..5:0.442331098614;SPIB:0.440001521799;SOX17:0.427331666208;ADNP_IRX_SIX_ZHX:0.407026996382;PAX1,9:0.400762266703;GFI1:0.399051853161;HAND1,2:0.393551074664;ZBTB6:0.390482850451;CRX:0.379483861953;STAT5{A,B}:0.377186036615;EN1,2:0.37395240929;ARID5B:0.373050638888;MYB:0.369325603357;BACH2:0.343723575608;POU2F1..3:0.334129513539;NFY{A,B,C}:0.326221686609;PBX1:0.324701320878;NR5A1,2:0.316789615789;ZNF423:0.31626432909;NKX2-2,8:0.299961154924;NFE2:0.288437899596;HIC1:0.267709094843;FOS_FOS{B,L1}_JUN{B,D}:0.267271976423;LHX3,4:0.261803216839;HOX{A5,B5}:0.260489642962;SPZ1:0.245484190307;PITX1..3:0.227482955046;TEAD1:0.217727661751;RORA:0.206066834939;GFI1B:0.204615198406;TFAP2B:0.200035751678;MTE{core}:0.193738468529;TBP:0.182264460501;ZFP161:0.17534229167;NANOG:0.172724301342;MYOD1:0.162391292616;UFEwm:0.1535721641;ALX1:0.143118058836;FOSL2:0.126051380063;SP1:0.107715000745;TLX2:0.107585085895;GZF1:0.102363017844;FOXA2:0.0826632535039;ESRRA:0.0793708749983;ZNF143:0.068649043979;SRF:0.0511474833363;ZNF238:0.0394010592633;NRF1:0.0336519856133;REST:0.0306548907253;GCM1,2:0.0090527683048;HBP1_HMGB_SSRP1_UBTF:0.00314367058966;SMAD1..7,9:-0.0176859568243;ZIC1..3:-0.0214733473478;FOXM1:-0.032439783506;CDC5L:-0.0335653571427;TAL1_TCF{3,4,12}:-0.0556919174911;HNF4A_NR2F1,2:-0.0558737121111;STAT2,4,6:-0.0569338341711;NFE2L2:-0.0607429795707;SPI1:-0.0624585014487;TFCP2:-0.0885243712054;PPARG:-0.0900476891204;IKZF2:-0.0986934042652;GTF2I:-0.116529391456;EBF1:-0.125447686891;NANOG{mouse}:-0.127809415149;MTF1:-0.145660206434;MED-1{core}:-0.147414142904;GLI1..3:-0.16372876392;EGR1..3:-0.177303381456;HMX1:-0.196273121173;NHLH1,2:-0.20100806213;MAZ:-0.20450564816;LMO2:-0.208485574443;FOXL1:-0.209792058833;HNF1A:-0.216538269888;PAX2:-0.220928494518;ELK1,4_GABP{A,B1}:-0.222480029637;GATA4:-0.246196047858;ALX4:-0.254206018321;NFKB1_REL_RELA:-0.261137958968;VSX1,2:-0.290726203019;HOXA9_MEIS1:-0.298395407145;OCT4_SOX2{dimer}:-0.301734591602;PATZ1:-0.309071149521;NKX3-2:-0.322855546165;MEF2{A,B,C,D}:-0.323547771999;KLF4:-0.338424570284;EVI1:-0.351588425555;XBP1:-0.367803211563;CUX2:-0.368500131066;TOPORS:-0.370850759949;NR6A1:-0.372928138844;ATF6:-0.379038457087;RXRA_VDR{dimer}:-0.379599805201;NKX2-3_NKX2-5:-0.382309553372;PAX3,7:-0.392811044494;ATF2:-0.393333067715;POU6F1:-0.398659676133;PRDM1:-0.402244845327;MZF1:-0.411254982592;JUN:-0.432499646515;RUNX1..3:-0.454628124905;TBX4,5:-0.461709749394;HLF:-0.476395658932;POU1F1:-0.482072776869;BREu{core}:-0.496272480768;STAT1,3:-0.533849378221;FOXD3:-0.534945213528;CREB1:-0.554766358089;IRF7:-0.555472229963;RREB1:-0.557676860402;SNAI1..3:-0.591283814548;IRF1,2:-0.601498321195;RBPJ:-0.607074268954;RFX1:-0.61027203041;ESR1:-0.619007119834;SREBF1,2:-0.620929495536;HSF1,2:-0.627590267421;DMAP1_NCOR{1,2}_SMARC:-0.641509755986;NFIX:-0.646575448196;CEBPA,B_DDIT3:-0.663194346832;AIRE:-0.680440673935;FOX{D1,D2}:-0.681737448824;NFIL3:-0.68223980759;HMGA1,2:-0.692474133443;PRRX1,2:-0.695649796307;POU5F1:-0.699548800659;NR1H4:-0.709345298295;MAFB:-0.711361775621;EP300:-0.727506711805;TGIF1:-0.744976358053;TEF:-0.7605907291;FOXN1:-0.774459766303;BPTF:-0.776832915746;MYBL2:-0.787232461773;FOX{F1,F2,J1}:-0.789943473881;ZEB1:-0.842829348865;ATF5_CREB3:-0.846742459196;ZBTB16:-0.856058565432;FOXO1,3,4:-0.856810904666;FOXQ1:-0.887547422019;MYFfamily:-0.894224081245;PAX4:-0.906569234384;HOX{A4,D4}:-0.912911810821;ZNF384:-0.955557533409;T:-0.962428580572;HIF1A:-0.981269871562;ATF4:-1.00285529391;AHR_ARNT_ARNT2:-1.01115742081;HOX{A6,A7,B6,B7}:-1.03987267572;FOXP1:-1.06566732115;DBP:-1.11739868481;CDX1,2,4:-1.21340801964;FOXP3:-1.24177783112;NKX2-1,4:-1.28159649601;PDX1:-1.34745649336;RFX2..5_RFXANK_RFXAP:-1.34902428891;NKX6-1,2:-1.76614498329;NKX3-1:-1.78322723287
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11413-118E9;search_select_hide=table117:FF:11413-118E9
}}
}}

Latest revision as of 17:59, 4 June 2020

Name:Endothelial Cells - Artery, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12023
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueartery
dev stage53 years old adult
sexmale
age53
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1596
catalog numberCA300-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005046
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12023 CAGE DRX008222 DRR009094
Accession ID Hg19

Library idBAMCTSS
CNhs12023 DRZ000519 DRZ001904
Accession ID Hg38

Library idBAMCTSS
CNhs12023 DRZ011869 DRZ013254
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005046
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.GTGGCC sRNA-Seq DRX037050 DRR041416
Accession ID Hg19

Library idBAMCTSS
SRhi10004.GTGGCC DRZ007058


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.11
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.15
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.214
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.545
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0061
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.272
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.441
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.28
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.493
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.678
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.356
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0824
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.211
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.836
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.152
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12023

Jaspar motifP-value
MA0002.20.189
MA0003.10.378
MA0004.10.312
MA0006.10.0516
MA0007.10.0471
MA0009.10.292
MA0014.10.994
MA0017.10.682
MA0018.22.88203e-4
MA0019.10.0404
MA0024.10.224
MA0025.10.948
MA0027.10.943
MA0028.10.643
MA0029.10.493
MA0030.10.181
MA0031.10.114
MA0035.20.00179
MA0038.10.152
MA0039.20.254
MA0040.10.46
MA0041.10.203
MA0042.10.719
MA0043.11.00519e-5
MA0046.10.645
MA0047.20.267
MA0048.10.0225
MA0050.10.0148
MA0051.10.696
MA0052.10.564
MA0055.11.43533e-4
MA0057.10.292
MA0058.10.308
MA0059.10.135
MA0060.18.92255e-4
MA0061.10.21
MA0062.20.381
MA0065.20.832
MA0066.10.811
MA0067.10.0966
MA0068.10.939
MA0069.10.0782
MA0070.10.996
MA0071.10.761
MA0072.10.518
MA0073.10.266
MA0074.10.778
MA0076.10.28
MA0077.12.36816e-6
MA0078.10.062
MA0079.20.327
MA0080.22.63279e-4
MA0081.10.0856
MA0083.10.173
MA0084.10.316
MA0087.10.194
MA0088.10.153
MA0090.10.214
MA0091.10.723
MA0092.10.706
MA0093.10.317
MA0099.22.79238e-14
MA0100.10.3
MA0101.10.681
MA0102.25.67965e-5
MA0103.10.0311
MA0104.20.871
MA0105.10.415
MA0106.10.00645
MA0107.10.615
MA0108.20.00719
MA0111.10.364
MA0112.20.637
MA0113.10.197
MA0114.10.339
MA0115.10.787
MA0116.10.916
MA0117.10.298
MA0119.10.0146
MA0122.10.056
MA0124.10.568
MA0125.10.458
MA0131.10.638
MA0135.10.274
MA0136.10.0068
MA0137.20.372
MA0138.20.896
MA0139.10.376
MA0140.10.0033
MA0141.10.0535
MA0142.10.443
MA0143.10.559
MA0144.10.331
MA0145.10.165
MA0146.10.751
MA0147.10.552
MA0148.10.128
MA0149.10.0187
MA0150.10.0519
MA0152.10.374
MA0153.10.539
MA0154.10.813
MA0155.10.122
MA0156.11.00275e-4
MA0157.10.431
MA0159.10.91
MA0160.10.485
MA0162.10.0998
MA0163.10.336
MA0164.10.658
MA0258.10.684
MA0259.10.89



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12023

Novel motifP-value
10.864
100.512
1000.517
1010.0239
1020.716
1030.63
1040.686
1050.754
1060.319
1070.00579
1080.549
1090.0826
110.21
1100.016
1110.817
1120.699
1130.0805
1140.964
1150.683
1160.468
1170.502
1180.201
1190.972
120.342
1200.028
1210.251
1220.751
1230.00866
1240.0322
1250.676
1260.682
1270.882
1280.385
1290.735
130.167
1300.217
1310.484
1320.533
1330.274
1340.401
1350.364
1360.00972
1370.104
1380.999
1390.671
140.472
1400.82
1410.926
1420.863
1430.174
1440.11
1450.151
1460.131
1470.486
1480.0462
1490.109
150.935
1500.0428
1510.996
1520.0233
1530.0312
1540.82
1550.467
1560.417
1570.185
1580.0373
1590.669
161
1600.0622
1610.447
1620.775
1630.902
1640.662
1650.0683
1660.214
1670.115
1680.46
1690.128
170.364
180.56
190.253
20.84
200.481
210.617
220.417
230.695
240.442
250.452
260.428
270.794
280.0735
290.575
30.786
300.874
310.766
320.509
330.248
340.226
350.253
360.0997
370.508
380.29
390.584
40.929
400.00449
410.207
420.835
430.426
440.79
450.262
460.948
470.362
480.0743
490.21
50.458
500.61
510.87
520.242
530.443
540.688
550.154
560.835
570.47
580.0544
590.168
60.268
600.381
610.957
620.25
630.403
640.809
650.892
660.0864
670.717
680.219
690.532
70.753
700.24
710.683
720.362
731.45882e-4
740.232
750.424
760.771
770.156
780.595
790.188
80.0378
800.919
810.256
820.175
830.655
840.414
850.196
860.918
870.00149
880.937
890.757
90.516
900.0666
910.602
920.496
930.836
940.19
950.0176
960.583
970.782
980.492
990.00676



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12023


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

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