FF:11416-118F3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005126 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005126 | ||
|accession_numbers=CAGE;DRX008236;DRR009108;DRZ000533;DRZ001918;DRZ011883;DRZ013268 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037125;DRR041491;DRZ007133 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000052 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor3.CNhs12026.11416-118F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor3.CNhs12026.11416-118F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor3.CNhs12026.11416-118F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor3.CNhs12026.11416-118F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor3.CNhs12026.11416-118F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11416-118F3 | |id=FF:11416-118F3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000052 | ||
|is_obsolete= | |||
|library_id=CNhs12026 | |||
|library_id_phase_based=2:CNhs12026 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11416 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTGGCC.11416 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11416 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTGGCC.11416 | |||
|name=Endothelial Cells - Vein, donor3 | |name=Endothelial Cells - Vein, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12026,LSID837,release011,COMPLETED | |profile_hcage=CNhs12026,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA200-R10n | |rna_catalog_number=CA200-R10n | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118F3 | |rna_tube_id=118F3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.GTGGCC | |||
|sample_age=neonatal | |sample_age=neonatal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=B | |sample_ethnicity=B | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.9261867171236e-243!GO:0005737;cytoplasm;7.50468492761066e-199!GO:0043226;organelle;1.9286002056105e-189!GO:0043229;intracellular organelle;3.41909181268651e-189!GO:0043231;intracellular membrane-bound organelle;1.2052957998783e-181!GO:0043227;membrane-bound organelle;3.00902464817346e-181!GO:0044422;organelle part;2.61222280251604e-142!GO:0044446;intracellular organelle part;5.3965515793418e-141!GO:0044444;cytoplasmic part;5.32551733607774e-139!GO:0032991;macromolecular complex;1.04231691567969e-98!GO:0005515;protein binding;5.88458321133808e-92!GO:0044238;primary metabolic process;7.13343201233851e-85!GO:0044237;cellular metabolic process;5.15299249627297e-84!GO:0030529;ribonucleoprotein complex;6.24985063465627e-82!GO:0043170;macromolecule metabolic process;9.89997947313388e-79!GO:0005739;mitochondrion;7.95929053928617e-71!GO:0043233;organelle lumen;1.04552150159383e-69!GO:0031974;membrane-enclosed lumen;1.04552150159383e-69!GO:0005634;nucleus;4.05810721269649e-68!GO:0044428;nuclear part;3.69629615964751e-67!GO:0003723;RNA binding;9.85916039854354e-64!GO:0019538;protein metabolic process;7.05230400961027e-57!GO:0016043;cellular component organization and biogenesis;4.11027555024723e-52!GO:0031090;organelle membrane;5.07162063875706e-51!GO:0043234;protein complex;6.14604667912244e-51!GO:0005840;ribosome;7.03509711175598e-51!GO:0044260;cellular macromolecule metabolic process;1.49973773751429e-50!GO:0044267;cellular protein metabolic process;1.81216512205856e-50!GO:0006412;translation;4.11545337401276e-48!GO:0044429;mitochondrial part;9.41320575618612e-48!GO:0003735;structural constituent of ribosome;1.01786347270708e-44!GO:0031967;organelle envelope;4.48720816401158e-44!GO:0031975;envelope;1.1871588706294e-43!GO:0043283;biopolymer metabolic process;3.7754948562697e-43!GO:0006396;RNA processing;6.98898084769074e-43!GO:0031981;nuclear lumen;1.64670691963131e-41!GO:0015031;protein transport;1.82217340059334e-40!GO:0005829;cytosol;3.18364900329204e-40!GO:0033036;macromolecule localization;8.34270381953587e-40!GO:0009058;biosynthetic process;5.07357503730319e-39!GO:0006996;organelle organization and biogenesis;1.36644970975997e-38!GO:0033279;ribosomal subunit;1.36678940591404e-38!GO:0044249;cellular biosynthetic process;3.55440305647615e-38!GO:0043228;non-membrane-bound organelle;1.19632881080413e-37!GO:0043232;intracellular non-membrane-bound organelle;1.19632881080413e-37!GO:0009059;macromolecule biosynthetic process;1.19632881080413e-37!GO:0045184;establishment of protein localization;2.57831831416822e-37!GO:0008104;protein localization;5.80276825200845e-37!GO:0046907;intracellular transport;3.27088111953881e-35!GO:0016071;mRNA metabolic process;3.25578416502445e-33!GO:0005740;mitochondrial envelope;3.44085721584866e-33!GO:0010467;gene expression;4.4917327703547e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.7798485068107e-32!GO:0065003;macromolecular complex assembly;7.69873254793113e-32!GO:0031966;mitochondrial membrane;2.69781790929081e-31!GO:0008380;RNA splicing;3.61563970431674e-31!GO:0019866;organelle inner membrane;1.89694906375529e-29!GO:0022607;cellular component assembly;2.08691485542638e-29!GO:0006397;mRNA processing;2.75163218924366e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.269740734465e-28!GO:0006886;intracellular protein transport;1.559660278391e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.8030449175119e-27!GO:0005743;mitochondrial inner membrane;3.27045952365569e-27!GO:0000166;nucleotide binding;4.6150854186244e-27!GO:0006259;DNA metabolic process;1.23989586339814e-26!GO:0005654;nucleoplasm;2.8375325172549e-25!GO:0051649;establishment of cellular localization;7.55942127298348e-24!GO:0051641;cellular localization;1.18869846181466e-23!GO:0044445;cytosolic part;5.32473803943319e-23!GO:0007049;cell cycle;1.04562031149973e-22!GO:0005681;spliceosome;1.24329944646048e-22!GO:0044455;mitochondrial membrane part;7.04204939832012e-21!GO:0006119;oxidative phosphorylation;8.08985262707705e-21!GO:0015934;large ribosomal subunit;1.14758149360268e-20!GO:0044451;nucleoplasm part;1.96717298369621e-20!GO:0032553;ribonucleotide binding;4.74292870305862e-20!GO:0032555;purine ribonucleotide binding;4.74292870305862e-20!GO:0012505;endomembrane system;5.83526111177512e-20!GO:0017076;purine nucleotide binding;7.87852003798183e-20!GO:0016462;pyrophosphatase activity;2.3722565425108e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.4129469949295e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;4.90174300417138e-19!GO:0015935;small ribosomal subunit;5.62631890725009e-19!GO:0043412;biopolymer modification;6.692653752656e-19!GO:0017111;nucleoside-triphosphatase activity;9.00389637691225e-19!GO:0031980;mitochondrial lumen;2.28715769990907e-18!GO:0005759;mitochondrial matrix;2.28715769990907e-18!GO:0006457;protein folding;2.39015883265483e-18!GO:0006512;ubiquitin cycle;1.17599021453276e-17!GO:0016874;ligase activity;1.23784079943086e-17!GO:0044265;cellular macromolecule catabolic process;1.56113568082828e-17!GO:0006464;protein modification process;1.88874518269202e-17!GO:0022402;cell cycle process;3.59741404471297e-17!GO:0005783;endoplasmic reticulum;5.0319247419608e-17!GO:0008134;transcription factor binding;5.89808476784214e-17!GO:0048770;pigment granule;7.27797321037882e-17!GO:0042470;melanosome;7.27797321037882e-17!GO:0005746;mitochondrial respiratory chain;7.81771164009841e-17!GO:0043285;biopolymer catabolic process;1.28773075535873e-16!GO:0005730;nucleolus;1.39547089390563e-16!GO:0005794;Golgi apparatus;2.57153434873981e-16!GO:0000278;mitotic cell cycle;2.69340514605927e-16!GO:0009057;macromolecule catabolic process;2.76238945451489e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;6.79350703065665e-16!GO:0000502;proteasome complex (sensu Eukaryota);7.63847284077558e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.95075542631079e-16!GO:0022618;protein-RNA complex assembly;8.76959332962022e-16!GO:0019941;modification-dependent protein catabolic process;8.76959332962022e-16!GO:0043632;modification-dependent macromolecule catabolic process;8.76959332962022e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.25934390169642e-15!GO:0044257;cellular protein catabolic process;1.62445562747279e-15!GO:0006605;protein targeting;3.46548865340632e-15!GO:0043687;post-translational protein modification;3.82116163689457e-15!GO:0050136;NADH dehydrogenase (quinone) activity;5.24256573658731e-15!GO:0003954;NADH dehydrogenase activity;5.24256573658731e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.24256573658731e-15!GO:0003676;nucleic acid binding;5.45849558837953e-15!GO:0032559;adenyl ribonucleotide binding;5.5635612752412e-15!GO:0005524;ATP binding;5.88164569690012e-15!GO:0030163;protein catabolic process;1.10081061457156e-14!GO:0030554;adenyl nucleotide binding;1.17900116067522e-14!GO:0044432;endoplasmic reticulum part;2.26173495833187e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.47998639170998e-14!GO:0051186;cofactor metabolic process;2.50742699943101e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.81304591850093e-14!GO:0016192;vesicle-mediated transport;3.37061115267142e-14!GO:0005761;mitochondrial ribosome;5.18246757144929e-14!GO:0000313;organellar ribosome;5.18246757144929e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.79827044602451e-14!GO:0044248;cellular catabolic process;1.07486074189418e-13!GO:0008135;translation factor activity, nucleic acid binding;1.54201889890096e-13!GO:0030964;NADH dehydrogenase complex (quinone);4.22324341994898e-13!GO:0045271;respiratory chain complex I;4.22324341994898e-13!GO:0005747;mitochondrial respiratory chain complex I;4.22324341994898e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.64432202859877e-13!GO:0042773;ATP synthesis coupled electron transport;6.64432202859877e-13!GO:0051082;unfolded protein binding;6.78178117792476e-13!GO:0051276;chromosome organization and biogenesis;7.26632345263059e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.21306996987744e-12!GO:0000375;RNA splicing, via transesterification reactions;1.21306996987744e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.21306996987744e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.30930091824898e-12!GO:0006974;response to DNA damage stimulus;1.38999736315846e-12!GO:0005694;chromosome;1.74099792094771e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;2.19818403506124e-12!GO:0048193;Golgi vesicle transport;2.19818403506124e-12!GO:0005635;nuclear envelope;3.8753651599539e-12!GO:0042254;ribosome biogenesis and assembly;5.25501712435357e-12!GO:0016070;RNA metabolic process;5.71899775163678e-12!GO:0006323;DNA packaging;1.25622280937219e-11!GO:0000087;M phase of mitotic cell cycle;1.5054928046692e-11!GO:0007067;mitosis;1.66317450056339e-11!GO:0044453;nuclear membrane part;1.95635167220943e-11!GO:0044427;chromosomal part;3.02077022868467e-11!GO:0031965;nuclear membrane;3.90918343948401e-11!GO:0003712;transcription cofactor activity;4.28556665437295e-11!GO:0012501;programmed cell death;4.55415931083137e-11!GO:0009055;electron carrier activity;5.5792362327478e-11!GO:0006915;apoptosis;6.59652499842589e-11!GO:0022403;cell cycle phase;8.21513684895662e-11!GO:0051726;regulation of cell cycle;8.3103615957366e-11!GO:0051301;cell division;8.37542634198085e-11!GO:0006732;coenzyme metabolic process;1.09302607579482e-10!GO:0006260;DNA replication;1.4964888187685e-10!GO:0003743;translation initiation factor activity;1.80802120958332e-10!GO:0000074;regulation of progression through cell cycle;1.81984450244078e-10!GO:0016604;nuclear body;2.49920228544334e-10!GO:0008639;small protein conjugating enzyme activity;2.50885958432756e-10!GO:0005793;ER-Golgi intermediate compartment;3.40636431130174e-10!GO:0006913;nucleocytoplasmic transport;3.48177287159683e-10!GO:0006281;DNA repair;3.77168351635531e-10!GO:0006461;protein complex assembly;4.29762656811968e-10!GO:0048523;negative regulation of cellular process;5.07199051903137e-10!GO:0009719;response to endogenous stimulus;5.51523835652401e-10!GO:0004842;ubiquitin-protein ligase activity;5.59640978151525e-10!GO:0006793;phosphorus metabolic process;6.26746068984159e-10!GO:0006796;phosphate metabolic process;6.26746068984159e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.51671568544036e-10!GO:0051169;nuclear transport;8.88241849248416e-10!GO:0009259;ribonucleotide metabolic process;9.02168955422521e-10!GO:0006413;translational initiation;9.23795732358141e-10!GO:0006163;purine nucleotide metabolic process;1.14609634853334e-09!GO:0006399;tRNA metabolic process;1.33447671938785e-09!GO:0019787;small conjugating protein ligase activity;1.45312180594779e-09!GO:0008219;cell death;1.71847061453622e-09!GO:0016265;death;1.71847061453622e-09!GO:0042623;ATPase activity, coupled;1.71847061453622e-09!GO:0005789;endoplasmic reticulum membrane;1.75482457406138e-09!GO:0009150;purine ribonucleotide metabolic process;2.93834206862823e-09!GO:0000785;chromatin;3.32118466673742e-09!GO:0016887;ATPase activity;4.50368857121277e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.51909968105571e-09!GO:0006446;regulation of translational initiation;4.78848401166242e-09!GO:0050794;regulation of cellular process;5.40508984166181e-09!GO:0005643;nuclear pore;5.80876371342892e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.59823109325767e-09!GO:0006333;chromatin assembly or disassembly;6.94023754611772e-09!GO:0009056;catabolic process;8.769062635618e-09!GO:0008565;protein transporter activity;9.13766714747439e-09!GO:0016310;phosphorylation;9.54414624953776e-09!GO:0006164;purine nucleotide biosynthetic process;1.05642659036592e-08!GO:0065004;protein-DNA complex assembly;1.46476023108776e-08!GO:0017038;protein import;1.66457949266203e-08!GO:0016881;acid-amino acid ligase activity;1.7145413085134e-08!GO:0015630;microtubule cytoskeleton;1.8577933015458e-08!GO:0009260;ribonucleotide biosynthetic process;1.90651224210918e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.25667464753057e-08!GO:0005525;GTP binding;2.4834133337705e-08!GO:0009060;aerobic respiration;2.60922916746185e-08!GO:0048519;negative regulation of biological process;2.6363766745662e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.70564478368256e-08!GO:0016740;transferase activity;2.79836947868942e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.88456340067581e-08!GO:0006364;rRNA processing;2.88456340067581e-08!GO:0003924;GTPase activity;3.14031972523168e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.26431210806542e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.41173402639058e-08!GO:0009141;nucleoside triphosphate metabolic process;4.16359866205963e-08!GO:0065002;intracellular protein transport across a membrane;4.44041024960713e-08!GO:0000279;M phase;4.56388724808742e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.9490059892754e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.9490059892754e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.90369215398073e-08!GO:0004812;aminoacyl-tRNA ligase activity;5.90369215398073e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.90369215398073e-08!GO:0006366;transcription from RNA polymerase II promoter;6.18765317685967e-08!GO:0007005;mitochondrion organization and biogenesis;6.31324381038308e-08!GO:0016072;rRNA metabolic process;8.28403459247439e-08!GO:0016023;cytoplasmic membrane-bound vesicle;8.4732770856816e-08!GO:0046930;pore complex;9.2787116797385e-08!GO:0051246;regulation of protein metabolic process;9.3589522796075e-08!GO:0045333;cellular respiration;1.09303826111615e-07!GO:0031988;membrane-bound vesicle;1.27074909879457e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.36980233305591e-07!GO:0005788;endoplasmic reticulum lumen;1.40731854276242e-07!GO:0016607;nuclear speck;1.59120928811792e-07!GO:0043038;amino acid activation;1.61325928186278e-07!GO:0006418;tRNA aminoacylation for protein translation;1.61325928186278e-07!GO:0043039;tRNA aminoacylation;1.61325928186278e-07!GO:0007010;cytoskeleton organization and biogenesis;1.61544118626837e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.93457168800847e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.95455614659071e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.95455614659071e-07!GO:0051188;cofactor biosynthetic process;2.0031421126646e-07!GO:0015986;ATP synthesis coupled proton transport;2.1838438750274e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.1838438750274e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.37420902506892e-07!GO:0004386;helicase activity;2.45037811094429e-07!GO:0044431;Golgi apparatus part;2.80908063723449e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.29857077850986e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.40783668685912e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.40783668685912e-07!GO:0032561;guanyl ribonucleotide binding;3.47161638033761e-07!GO:0019001;guanyl nucleotide binding;3.47161638033761e-07!GO:0046034;ATP metabolic process;3.51140450113182e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.69195762192785e-07!GO:0030036;actin cytoskeleton organization and biogenesis;3.96216440476763e-07!GO:0006334;nucleosome assembly;4.36820328008609e-07!GO:0009117;nucleotide metabolic process;5.39004827039728e-07!GO:0031252;leading edge;5.40963131153942e-07!GO:0005768;endosome;5.51150098306449e-07!GO:0050657;nucleic acid transport;6.26644516376375e-07!GO:0051236;establishment of RNA localization;6.26644516376375e-07!GO:0050658;RNA transport;6.26644516376375e-07!GO:0006403;RNA localization;6.6225760032071e-07!GO:0019829;cation-transporting ATPase activity;7.52448017781389e-07!GO:0042981;regulation of apoptosis;7.77012684070889e-07!GO:0043067;regulation of programmed cell death;8.32583097390295e-07!GO:0016568;chromatin modification;8.49276339905967e-07!GO:0008026;ATP-dependent helicase activity;8.67202807744472e-07!GO:0032446;protein modification by small protein conjugation;9.09792031509812e-07!GO:0031497;chromatin assembly;9.38710449611368e-07!GO:0007264;small GTPase mediated signal transduction;1.07373292037503e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.19255313159265e-06!GO:0045786;negative regulation of progression through cell cycle;1.37175229650009e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.38169265629981e-06!GO:0031410;cytoplasmic vesicle;1.47990046724331e-06!GO:0016567;protein ubiquitination;1.54429417642374e-06!GO:0031982;vesicle;1.57031212540751e-06!GO:0006099;tricarboxylic acid cycle;1.90622710299596e-06!GO:0046356;acetyl-CoA catabolic process;1.90622710299596e-06!GO:0019899;enzyme binding;1.93958954269022e-06!GO:0030120;vesicle coat;2.15578588205397e-06!GO:0030662;coated vesicle membrane;2.15578588205397e-06!GO:0030029;actin filament-based process;2.16206835699679e-06!GO:0006754;ATP biosynthetic process;2.19343405318991e-06!GO:0006753;nucleoside phosphate metabolic process;2.19343405318991e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.2810892079028e-06!GO:0048475;coated membrane;2.41897038553351e-06!GO:0030117;membrane coat;2.41897038553351e-06!GO:0003697;single-stranded DNA binding;2.50973333565023e-06!GO:0006916;anti-apoptosis;3.01660160893587e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.11371159261132e-06!GO:0016563;transcription activator activity;4.47368098696247e-06!GO:0050789;regulation of biological process;4.57603233415035e-06!GO:0005667;transcription factor complex;4.69381329062921e-06!GO:0006084;acetyl-CoA metabolic process;4.84530475973857e-06!GO:0045259;proton-transporting ATP synthase complex;5.0129351213604e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.15092843425163e-06!GO:0007243;protein kinase cascade;5.21162849654327e-06!GO:0051187;cofactor catabolic process;5.64357011091783e-06!GO:0000139;Golgi membrane;6.06792554489232e-06!GO:0043069;negative regulation of programmed cell death;6.17840185071133e-06!GO:0008092;cytoskeletal protein binding;6.33191700986523e-06!GO:0003713;transcription coactivator activity;7.01520062352184e-06!GO:0000151;ubiquitin ligase complex;7.04624984339054e-06!GO:0000245;spliceosome assembly;8.25647950194342e-06!GO:0043066;negative regulation of apoptosis;8.96718689048142e-06!GO:0005762;mitochondrial large ribosomal subunit;9.30500872759715e-06!GO:0000315;organellar large ribosomal subunit;9.30500872759715e-06!GO:0051170;nuclear import;9.31852746195542e-06!GO:0009108;coenzyme biosynthetic process;1.14309130228874e-05!GO:0031968;organelle outer membrane;1.20332331131261e-05!GO:0016787;hydrolase activity;1.24224615609648e-05!GO:0006606;protein import into nucleus;1.408993948308e-05!GO:0008047;enzyme activator activity;1.49931023342582e-05!GO:0016779;nucleotidyltransferase activity;1.53715571633991e-05!GO:0016491;oxidoreductase activity;1.54499338377389e-05!GO:0019867;outer membrane;1.59299850023653e-05!GO:0045454;cell redox homeostasis;1.64006691836132e-05!GO:0051028;mRNA transport;1.79899795152669e-05!GO:0003714;transcription corepressor activity;1.85446023982278e-05!GO:0016564;transcription repressor activity;1.90438953731161e-05!GO:0005813;centrosome;2.01033980459059e-05!GO:0004298;threonine endopeptidase activity;2.02508976597951e-05!GO:0005769;early endosome;2.06287963766741e-05!GO:0043623;cellular protein complex assembly;2.07371521980975e-05!GO:0009109;coenzyme catabolic process;2.0830940478518e-05!GO:0051329;interphase of mitotic cell cycle;2.38007225653393e-05!GO:0043566;structure-specific DNA binding;3.05374286804701e-05!GO:0006752;group transfer coenzyme metabolic process;3.28247501385809e-05!GO:0005819;spindle;3.32570925166257e-05!GO:0005741;mitochondrial outer membrane;3.3385913335372e-05!GO:0044440;endosomal part;3.38178965418449e-05!GO:0010008;endosome membrane;3.38178965418449e-05!GO:0016853;isomerase activity;3.61449394256799e-05!GO:0051325;interphase;3.74907704314272e-05!GO:0003724;RNA helicase activity;3.9699643945528e-05!GO:0005096;GTPase activator activity;4.27615607143237e-05!GO:0005770;late endosome;4.84458710218635e-05!GO:0030867;rough endoplasmic reticulum membrane;5.54986086051702e-05!GO:0005815;microtubule organizing center;5.61626845709323e-05!GO:0048522;positive regulation of cellular process;5.98833489153371e-05!GO:0006613;cotranslational protein targeting to membrane;6.01519305984438e-05!GO:0051427;hormone receptor binding;6.28242002774751e-05!GO:0008654;phospholipid biosynthetic process;7.55845747978515e-05!GO:0005905;coated pit;8.34251874228742e-05!GO:0016044;membrane organization and biogenesis;0.000100036093983792!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000110541722379466!GO:0035257;nuclear hormone receptor binding;0.000136158934120477!GO:0033116;ER-Golgi intermediate compartment membrane;0.000138623301081444!GO:0003899;DNA-directed RNA polymerase activity;0.000141531143569759!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000153606533276058!GO:0042802;identical protein binding;0.00020363549307245!GO:0051087;chaperone binding;0.000220911650071728!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000229521775089677!GO:0048471;perinuclear region of cytoplasm;0.000235079471606921!GO:0005773;vacuole;0.000249507549351892!GO:0031324;negative regulation of cellular metabolic process;0.000255811461906655!GO:0030695;GTPase regulator activity;0.000278638136776704!GO:0006839;mitochondrial transport;0.000283449995454715!GO:0015980;energy derivation by oxidation of organic compounds;0.000311253335807267!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000323310380872236!GO:0005048;signal sequence binding;0.000323649806119074!GO:0005798;Golgi-associated vesicle;0.000332965743906184!GO:0005885;Arp2/3 protein complex;0.000337362538359511!GO:0006091;generation of precursor metabolites and energy;0.000400740493898162!GO:0005874;microtubule;0.000402947365709282!GO:0065009;regulation of a molecular function;0.000413500451524375!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000445028642762644!GO:0007265;Ras protein signal transduction;0.00045195029544503!GO:0009892;negative regulation of metabolic process;0.000452249697415239!GO:0016859;cis-trans isomerase activity;0.0004600046675696!GO:0009165;nucleotide biosynthetic process;0.000492462774381484!GO:0006612;protein targeting to membrane;0.000494624891684593!GO:0000314;organellar small ribosomal subunit;0.000507989691792586!GO:0005763;mitochondrial small ribosomal subunit;0.000507989691792586!GO:0006261;DNA-dependent DNA replication;0.000507989691792586!GO:0000786;nucleosome;0.000510279345586946!GO:0030880;RNA polymerase complex;0.00054192336297329!GO:0008186;RNA-dependent ATPase activity;0.000542886023248662!GO:0043681;protein import into mitochondrion;0.00054768265078297!GO:0007242;intracellular signaling cascade;0.000583976429703886!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000613964803122198!GO:0043021;ribonucleoprotein binding;0.000668453636931167!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000698376406546857!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000698376406546857!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000701224817699162!GO:0044262;cellular carbohydrate metabolic process;0.000748498323798897!GO:0006626;protein targeting to mitochondrion;0.000776965562049971!GO:0006414;translational elongation;0.000791868540867448!GO:0008632;apoptotic program;0.000793105793145924!GO:0004674;protein serine/threonine kinase activity;0.000801121608562441!GO:0019843;rRNA binding;0.000861626418555191!GO:0051920;peroxiredoxin activity;0.000897729681109503!GO:0007006;mitochondrial membrane organization and biogenesis;0.000944014349937291!GO:0008361;regulation of cell size;0.00111468192221389!GO:0008250;oligosaccharyl transferase complex;0.00120972578345387!GO:0065007;biological regulation;0.00125350317806488!GO:0030027;lamellipodium;0.00125350317806488!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0013014685799581!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0013014685799581!GO:0000428;DNA-directed RNA polymerase complex;0.0013014685799581!GO:0000059;protein import into nucleus, docking;0.0013014685799581!GO:0007051;spindle organization and biogenesis;0.00130865388978227!GO:0051168;nuclear export;0.00130865388978227!GO:0016363;nuclear matrix;0.00131548243242527!GO:0004004;ATP-dependent RNA helicase activity;0.00147021570418285!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00156540720245697!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00157188776013725!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00157188776013725!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00157188776013725!GO:0016049;cell growth;0.00165964350800266!GO:0015631;tubulin binding;0.0016856930882519!GO:0008033;tRNA processing;0.00169930111890828!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00170352704132624!GO:0001558;regulation of cell growth;0.00174277649598422!GO:0000323;lytic vacuole;0.00178555480055301!GO:0005764;lysosome;0.00178555480055301!GO:0016301;kinase activity;0.00179158962059484!GO:0004576;oligosaccharyl transferase activity;0.00185936762682623!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00192957092631699!GO:0031072;heat shock protein binding;0.00205868437517266!GO:0000075;cell cycle checkpoint;0.0020652002846767!GO:0018196;peptidyl-asparagine modification;0.00219781724369662!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00219781724369662!GO:0005083;small GTPase regulator activity;0.00228623806106678!GO:0007050;cell cycle arrest;0.00228982392773297!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00236382212710315!GO:0015399;primary active transmembrane transporter activity;0.00236382212710315!GO:0048487;beta-tubulin binding;0.00261047855475283!GO:0006402;mRNA catabolic process;0.00269770863638335!GO:0005684;U2-dependent spliceosome;0.00283894194379885!GO:0051252;regulation of RNA metabolic process;0.00301627209549507!GO:0030659;cytoplasmic vesicle membrane;0.00317327404183915!GO:0003729;mRNA binding;0.00326934923992487!GO:0045941;positive regulation of transcription;0.00326934923992487!GO:0005637;nuclear inner membrane;0.00334136318686818!GO:0046474;glycerophospholipid biosynthetic process;0.00336560299432464!GO:0051101;regulation of DNA binding;0.00342167936104922!GO:0043488;regulation of mRNA stability;0.00342167936104922!GO:0043487;regulation of RNA stability;0.00342167936104922!GO:0008154;actin polymerization and/or depolymerization;0.00349251545218028!GO:0003779;actin binding;0.0035565121128929!GO:0006401;RNA catabolic process;0.0035565121128929!GO:0016126;sterol biosynthetic process;0.00367197038951735!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00371329053196458!GO:0008094;DNA-dependent ATPase activity;0.00373084496612399!GO:0008139;nuclear localization sequence binding;0.00395119974914936!GO:0030041;actin filament polymerization;0.0039516187167625!GO:0006383;transcription from RNA polymerase III promoter;0.00414208871877639!GO:0006950;response to stress;0.00417240290739804!GO:0035258;steroid hormone receptor binding;0.0042267747549694!GO:0016481;negative regulation of transcription;0.00426002062010114!GO:0017166;vinculin binding;0.00426324077802412!GO:0007017;microtubule-based process;0.00430470798194571!GO:0003684;damaged DNA binding;0.00432605316829089!GO:0045893;positive regulation of transcription, DNA-dependent;0.00436423601775492!GO:0030658;transport vesicle membrane;0.00436423601775492!GO:0044452;nucleolar part;0.00449505078936154!GO:0030132;clathrin coat of coated pit;0.00456356848377091!GO:0006509;membrane protein ectodomain proteolysis;0.00467281688602071!GO:0033619;membrane protein proteolysis;0.00467281688602071!GO:0006695;cholesterol biosynthetic process;0.00481360040466021!GO:0051789;response to protein stimulus;0.00485913073819984!GO:0006986;response to unfolded protein;0.00485913073819984!GO:0030521;androgen receptor signaling pathway;0.00485913073819984!GO:0030133;transport vesicle;0.00502648531371599!GO:0044433;cytoplasmic vesicle part;0.00521524356456388!GO:0030118;clathrin coat;0.00533635648651628!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00556293208593035!GO:0006897;endocytosis;0.00572759671631571!GO:0010324;membrane invagination;0.00572759671631571!GO:0000082;G1/S transition of mitotic cell cycle;0.00577455592560066!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00589949443550682!GO:0000775;chromosome, pericentric region;0.00592226537811055!GO:0001726;ruffle;0.00592226537811055!GO:0006740;NADPH regeneration;0.00594651920787855!GO:0006098;pentose-phosphate shunt;0.00594651920787855!GO:0048518;positive regulation of biological process;0.00595812271719335!GO:0005791;rough endoplasmic reticulum;0.0065385478686358!GO:0030663;COPI coated vesicle membrane;0.00718779581917125!GO:0030126;COPI vesicle coat;0.00718779581917125!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00734850706579373!GO:0009967;positive regulation of signal transduction;0.00742262192000005!GO:0005657;replication fork;0.00744819327110686!GO:0007266;Rho protein signal transduction;0.00747378874458185!GO:0003682;chromatin binding;0.0076388610558288!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0076388610558288!GO:0006778;porphyrin metabolic process;0.0076989252937725!GO:0033013;tetrapyrrole metabolic process;0.0076989252937725!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0080099056919009!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0080099056919009!GO:0048500;signal recognition particle;0.00841200355370076!GO:0043284;biopolymer biosynthetic process;0.00879183072173809!GO:0003746;translation elongation factor activity;0.00901433425606368!GO:0009966;regulation of signal transduction;0.00904783622532299!GO:0032508;DNA duplex unwinding;0.00907414491833903!GO:0032392;DNA geometric change;0.00907414491833903!GO:0030134;ER to Golgi transport vesicle;0.00922606445402324!GO:0006352;transcription initiation;0.00926703197591274!GO:0046467;membrane lipid biosynthetic process;0.00929726959071664!GO:0006818;hydrogen transport;0.00933866494124015!GO:0015036;disulfide oxidoreductase activity;0.0094557784237962!GO:0006891;intra-Golgi vesicle-mediated transport;0.00955938341655647!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00964770114823081!GO:0015992;proton transport;0.00972591547012932!GO:0046483;heterocycle metabolic process;0.00977663456043042!GO:0051128;regulation of cellular component organization and biogenesis;0.00984254735905376!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0101592506090583!GO:0003678;DNA helicase activity;0.0104214060621129!GO:0007088;regulation of mitosis;0.0104214060621129!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0104523758968542!GO:0051098;regulation of binding;0.0104608826827483!GO:0001568;blood vessel development;0.0106806798448944!GO:0043492;ATPase activity, coupled to movement of substances;0.0107048471360866!GO:0050662;coenzyme binding;0.010894504746751!GO:0030127;COPII vesicle coat;0.0112086108661713!GO:0012507;ER to Golgi transport vesicle membrane;0.0112086108661713!GO:0006595;polyamine metabolic process;0.0116025501686335!GO:0019222;regulation of metabolic process;0.0116025501686335!GO:0008180;signalosome;0.0119200950186635!GO:0030660;Golgi-associated vesicle membrane;0.0119200950186635!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0119305173549747!GO:0045045;secretory pathway;0.0120236583577461!GO:0006289;nucleotide-excision repair;0.0122049368981536!GO:0007040;lysosome organization and biogenesis;0.0122859199508677!GO:0046489;phosphoinositide biosynthetic process;0.0123311416464853!GO:0000049;tRNA binding;0.0123311416464853!GO:0050790;regulation of catalytic activity;0.0123326707270936!GO:0051287;NAD binding;0.0123934731805718!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0124484368282137!GO:0006268;DNA unwinding during replication;0.0128173933151723!GO:0006611;protein export from nucleus;0.0128624829772775!GO:0030137;COPI-coated vesicle;0.0129323603776895!GO:0048660;regulation of smooth muscle cell proliferation;0.0130481873585063!GO:0007093;mitotic cell cycle checkpoint;0.0133410694836354!GO:0005832;chaperonin-containing T-complex;0.0134198809100832!GO:0001944;vasculature development;0.0135078262762457!GO:0016197;endosome transport;0.0138637756401316!GO:0043022;ribosome binding;0.0138673263818322!GO:0012506;vesicle membrane;0.0138673263818322!GO:0016272;prefoldin complex;0.0139927004707094!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0141013587888648!GO:0015002;heme-copper terminal oxidase activity;0.0141013587888648!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0141013587888648!GO:0004129;cytochrome-c oxidase activity;0.0141013587888648!GO:0051540;metal cluster binding;0.0146059896801747!GO:0051536;iron-sulfur cluster binding;0.0146059896801747!GO:0006650;glycerophospholipid metabolic process;0.0152118385396092!GO:0005862;muscle thin filament tropomyosin;0.0152356814501303!GO:0008287;protein serine/threonine phosphatase complex;0.0154609904524639!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0154609904524639!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0154702551594609!GO:0040008;regulation of growth;0.0154769812288424!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0154809099208005!GO:0048468;cell development;0.0155585716649598!GO:0005099;Ras GTPase activator activity;0.0155648481897296!GO:0003711;transcription elongation regulator activity;0.015658792784994!GO:0008312;7S RNA binding;0.0160911732312924!GO:0030833;regulation of actin filament polymerization;0.0161631751409802!GO:0016251;general RNA polymerase II transcription factor activity;0.0161967707151153!GO:0000910;cytokinesis;0.0163767261216714!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0163949768782752!GO:0031902;late endosome membrane;0.0164510006269548!GO:0030176;integral to endoplasmic reticulum membrane;0.0165235448360573!GO:0031625;ubiquitin protein ligase binding;0.0166318729011842!GO:0042168;heme metabolic process;0.0167940284368696!GO:0030518;steroid hormone receptor signaling pathway;0.0167940284368696!GO:0005092;GDP-dissociation inhibitor activity;0.0168124159800783!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0168554727641185!GO:0045047;protein targeting to ER;0.0168554727641185!GO:0051539;4 iron, 4 sulfur cluster binding;0.0169276839830654!GO:0005774;vacuolar membrane;0.0170600065792014!GO:0033673;negative regulation of kinase activity;0.0170980484830957!GO:0006469;negative regulation of protein kinase activity;0.0170980484830957!GO:0022890;inorganic cation transmembrane transporter activity;0.0172875154175507!GO:0016311;dephosphorylation;0.0175622593374702!GO:0016584;nucleosome positioning;0.0178302034938091!GO:0005869;dynactin complex;0.0178433809710703!GO:0007162;negative regulation of cell adhesion;0.0178804666940806!GO:0031901;early endosome membrane;0.0183776254460163!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0188904072213375!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0189606605526632!GO:0008286;insulin receptor signaling pathway;0.0189726814780838!GO:0006405;RNA export from nucleus;0.0189726814780838!GO:0005100;Rho GTPase activator activity;0.0189726814780838!GO:0006284;base-excision repair;0.0189759532574128!GO:0030865;cortical cytoskeleton organization and biogenesis;0.019425741511838!GO:0051348;negative regulation of transferase activity;0.0199465214247966!GO:0022415;viral reproductive process;0.0199726226435556!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0202768135813134!GO:0003756;protein disulfide isomerase activity;0.0203430232454288!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0203430232454288!GO:0006979;response to oxidative stress;0.0204352447294885!GO:0019904;protein domain specific binding;0.0206240917017409!GO:0007346;regulation of progression through mitotic cell cycle;0.0207221966792251!GO:0000209;protein polyubiquitination;0.0207843704413444!GO:0006338;chromatin remodeling;0.0207909302745984!GO:0000776;kinetochore;0.0209666745548114!GO:0000096;sulfur amino acid metabolic process;0.0209666745548114!GO:0008022;protein C-terminus binding;0.0210515808958562!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0212340857422291!GO:0030119;AP-type membrane coat adaptor complex;0.0215863314249303!GO:0008283;cell proliferation;0.0232586153907579!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0233073839656792!GO:0009303;rRNA transcription;0.023410337661291!GO:0005856;cytoskeleton;0.0238792363396471!GO:0035035;histone acetyltransferase binding;0.0239042807785178!GO:0007044;cell-substrate junction assembly;0.0240579906937271!GO:0031272;regulation of pseudopodium formation;0.0244261390749077!GO:0031269;pseudopodium formation;0.0244261390749077!GO:0031344;regulation of cell projection organization and biogenesis;0.0244261390749077!GO:0031268;pseudopodium organization and biogenesis;0.0244261390749077!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0244261390749077!GO:0031274;positive regulation of pseudopodium formation;0.0244261390749077!GO:0007021;tubulin folding;0.0245493751509691!GO:0006302;double-strand break repair;0.0250862082302931!GO:0050681;androgen receptor binding;0.0251496900769013!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0258352427193741!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0258352427193741!GO:0033043;regulation of organelle organization and biogenesis;0.0258352427193741!GO:0007033;vacuole organization and biogenesis;0.025852802794987!GO:0042393;histone binding;0.0264515726100074!GO:0004177;aminopeptidase activity;0.0266122616339626!GO:0006779;porphyrin biosynthetic process;0.0269164844631714!GO:0033014;tetrapyrrole biosynthetic process;0.0269164844631714!GO:0043189;H4/H2A histone acetyltransferase complex;0.026988242132613!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0270269074862549!GO:0050178;phenylpyruvate tautomerase activity;0.0270635914956334!GO:0008637;apoptotic mitochondrial changes;0.0276469992480406!GO:0004518;nuclease activity;0.0280310223210292!GO:0008538;proteasome activator activity;0.0282675102833481!GO:0006007;glucose catabolic process;0.0282809904596544!GO:0009116;nucleoside metabolic process;0.0287529170234645!GO:0047485;protein N-terminus binding;0.0293031521673825!GO:0030145;manganese ion binding;0.0299546893040417!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0299546893040417!GO:0030496;midbody;0.0300675916452041!GO:0022408;negative regulation of cell-cell adhesion;0.0301669322661413!GO:0007052;mitotic spindle organization and biogenesis;0.0306432171579863!GO:0007034;vacuolar transport;0.0308596506120243!GO:0030032;lamellipodium biogenesis;0.0310113733478347!GO:0008610;lipid biosynthetic process;0.0315456692320353!GO:0003690;double-stranded DNA binding;0.0322666344843552!GO:0051270;regulation of cell motility;0.0328903111350665!GO:0033559;unsaturated fatty acid metabolic process;0.0328924447460457!GO:0006636;unsaturated fatty acid biosynthetic process;0.0328924447460457!GO:0000339;RNA cap binding;0.0331827042097913!GO:0030131;clathrin adaptor complex;0.0335487438555207!GO:0031529;ruffle organization and biogenesis;0.0336426793394668!GO:0016407;acetyltransferase activity;0.0337959085995104!GO:0031418;L-ascorbic acid binding;0.0339217599497029!GO:0000123;histone acetyltransferase complex;0.0339217599497029!GO:0043281;regulation of caspase activity;0.0342842453060388!GO:0019206;nucleoside kinase activity;0.0343562818692326!GO:0046822;regulation of nucleocytoplasmic transport;0.0344477781574453!GO:0006417;regulation of translation;0.0344477781574453!GO:0001953;negative regulation of cell-matrix adhesion;0.0346532830688131!GO:0035267;NuA4 histone acetyltransferase complex;0.0348677647901465!GO:0045792;negative regulation of cell size;0.0348677647901465!GO:0006739;NADP metabolic process;0.0351651458244493!GO:0004680;casein kinase activity;0.0351651458244493!GO:0004722;protein serine/threonine phosphatase activity;0.0358013082868291!GO:0031124;mRNA 3'-end processing;0.0359483933687154!GO:0000159;protein phosphatase type 2A complex;0.0360995096713583!GO:0006376;mRNA splice site selection;0.0362248005607!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0362248005607!GO:0006643;membrane lipid metabolic process;0.0363472151205335!GO:0045334;clathrin-coated endocytic vesicle;0.0363858380623924!GO:0006082;organic acid metabolic process;0.0370801923186582!GO:0044437;vacuolar part;0.0370801923186582!GO:0030308;negative regulation of cell growth;0.0370801923186582!GO:0048659;smooth muscle cell proliferation;0.0377957155427249!GO:0004527;exonuclease activity;0.0378365020584238!GO:0030384;phosphoinositide metabolic process;0.0381719376330551!GO:0008017;microtubule binding;0.038218741291595!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0385160955348906!GO:0005652;nuclear lamina;0.0385160955348906!GO:0006354;RNA elongation;0.0385725222344147!GO:0040011;locomotion;0.0392930910145594!GO:0030125;clathrin vesicle coat;0.0392930910145594!GO:0030665;clathrin coated vesicle membrane;0.0392930910145594!GO:0050811;GABA receptor binding;0.0394010881731016!GO:0030911;TPR domain binding;0.0395848598042736!GO:0006497;protein amino acid lipidation;0.0397145611749149!GO:0046426;negative regulation of JAK-STAT cascade;0.0399368954149964!GO:0008213;protein amino acid alkylation;0.0399740234567829!GO:0006479;protein amino acid methylation;0.0399740234567829!GO:0005784;translocon complex;0.0406128719999694!GO:0043433;negative regulation of transcription factor activity;0.0406746990104227!GO:0016791;phosphoric monoester hydrolase activity;0.040783556631207!GO:0005851;eukaryotic translation initiation factor 2B complex;0.041038270087643!GO:0005765;lysosomal membrane;0.0411135188133874!GO:0019752;carboxylic acid metabolic process;0.0412840764980795!GO:0009112;nucleobase metabolic process;0.0416043675982168!GO:0051052;regulation of DNA metabolic process;0.0420457082018775!GO:0000118;histone deacetylase complex;0.0421615713562904!GO:0043086;negative regulation of catalytic activity;0.0423247700321181!GO:0008629;induction of apoptosis by intracellular signals;0.0425493082338612!GO:0005876;spindle microtubule;0.043081780676424!GO:0006892;post-Golgi vesicle-mediated transport;0.0435307571672082!GO:0043414;biopolymer methylation;0.043999257120667!GO:0008536;Ran GTPase binding;0.0441858784587246!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0442263207499096!GO:0030508;thiol-disulfide exchange intermediate activity;0.0442567233135594!GO:0005938;cell cortex;0.0442567233135594!GO:0051059;NF-kappaB binding;0.0442567233135594!GO:0006144;purine base metabolic process;0.0443073045739678!GO:0006516;glycoprotein catabolic process;0.0444702838783333!GO:0000922;spindle pole;0.0452405305172117!GO:0008601;protein phosphatase type 2A regulator activity;0.0452405305172117!GO:0006468;protein amino acid phosphorylation;0.0455013664573947!GO:0006378;mRNA polyadenylation;0.0458259208433622!GO:0008234;cysteine-type peptidase activity;0.0458734122296573!GO:0005669;transcription factor TFIID complex;0.0460053943967313!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0466498156003251!GO:0010257;NADH dehydrogenase complex assembly;0.0466498156003251!GO:0033108;mitochondrial respiratory chain complex assembly;0.0466498156003251!GO:0043624;cellular protein complex disassembly;0.0467840193724268!GO:0008168;methyltransferase activity;0.0470221343550638!GO:0006520;amino acid metabolic process;0.0474657199074066!GO:0000287;magnesium ion binding;0.0479671929751231!GO:0016741;transferase activity, transferring one-carbon groups;0.0482800282453722!GO:0032984;macromolecular complex disassembly;0.0486306873755939!GO:0030913;paranodal junction assembly;0.0492380332632152!GO:0032288;myelin formation;0.0492380332632152!GO:0006220;pyrimidine nucleotide metabolic process;0.0493838962954988 | |||
|sample_id=11416 | |sample_id=11416 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=vein | |sample_tissue=vein | ||
|top_motifs=SOX{8,9,10}:2.05617083491;RXR{A,B,G}:1.38956455004;TLX1..3_NFIC{dimer}:1.03060474654;SOX2:1.01642716747;ONECUT1,2:1.01292525946;NFATC1..3:0.895351892066;PAX8:0.894594289454;TFAP2{A,C}:0.891447233261;IKZF2:0.856063221986;AR:0.850409883585;XCPE1{core}:0.845377348433;PAX6:0.816679805226;GTF2A1,2:0.816032364627;TFDP1:0.816012286315;GATA6:0.777901566403;HIC1:0.741310145125;ZFP161:0.707424546504;POU3F1..4:0.697770078601;EN1,2:0.674529807286;HBP1_HMGB_SSRP1_UBTF:0.660358294311;PAX1,9:0.639877367846;HES1:0.615020086044;TFAP4:0.59993264468;SOX17:0.599259491349;TFAP2B:0.578664014851;LEF1_TCF7_TCF7L1,2:0.564622564518;IKZF1:0.543507742836;ETS1,2:0.522032971617;TP53:0.49394614862;ARID5B:0.480448504798;FOXL1:0.458643157629;SOX5:0.453439855266;SPIB:0.448853105596;ELF1,2,4:0.442145612832;ALX1:0.437730067841;ZNF148:0.431652774189;FOX{I1,J2}:0.40649091985;NR5A1,2:0.365114114675;SP1:0.344898062993;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.320823188972;SPZ1:0.302388918397;EGR1..3:0.281549143226;MYB:0.28121391911;REST:0.266293747732;BACH2:0.259346419262;UFEwm:0.254320369729;ADNP_IRX_SIX_ZHX:0.248354624817;bHLH_family:0.230703798694;ZBTB6:0.228947173627;POU1F1:0.223494605876;NFE2:0.217892784227;TEAD1:0.208869368133;MTE{core}:0.200220546287;GATA4:0.193467530218;E2F1..5:0.187385960502;GFI1:0.175429080761;ZIC1..3:0.174235310408;FOS_FOS{B,L1}_JUN{B,D}:0.171536877087;GZF1:0.160817986187;PPARG:0.134125866445;MED-1{core}:0.130115490397;NANOG{mouse}:0.125495328703;FOSL2:0.113695478257;ZNF143:0.112789831426;PAX5:0.106149252218;NKX2-2,8:0.0882815967741;YY1:0.0878091980212;TBP:0.085156255357;ZNF423:0.0744087244447;GFI1B:0.0738943199183;ZNF238:0.0719270786586;HNF4A_NR2F1,2:0.0616098749097;CRX:0.0607365102474;HOX{A5,B5}:0.0492222559411;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0383344282189;FOXA2:0.0277332575207;POU2F1..3:0.0245917345443;NFE2L1:0.0235142386168;PATZ1:0.0188943073582;GLI1..3:0.0159817264276;NR3C1:0.0157419298511;EBF1:0.000204375726114;NFY{A,B,C}:-0.0133267813892;ESRRA:-0.0142769682752;NRF1:-0.0236800276116;PITX1..3:-0.0276263866672;POU6F1:-0.0333138753825;NANOG:-0.0537926393933;LMO2:-0.0596394580915;TFCP2:-0.0734134076121;PBX1:-0.0747031678633;GCM1,2:-0.0789931593815;GTF2I:-0.0795395634277;SPI1:-0.0818455750864;ALX4:-0.0890663475281;NFE2L2:-0.0945441433271;RORA:-0.0982018255315;FOXD3:-0.0983356949432;NHLH1,2:-0.101837054825;MAZ:-0.108197748467;MYOD1:-0.142066395913;SRF:-0.144130385234;STAT5{A,B}:-0.171265014095;HAND1,2:-0.175461646971;CDC5L:-0.176147903334;BREu{core}:-0.179809200521;MTF1:-0.20664589391;STAT2,4,6:-0.208448030321;LHX3,4:-0.209640334554;TEF:-0.214166823202;FOXM1:-0.218235994388;HNF1A:-0.232239679525;MEF2{A,B,C,D}:-0.233326504724;FOXQ1:-0.240669880801;ESR1:-0.243355230453;NKX2-3_NKX2-5:-0.265848900489;CUX2:-0.287697576072;PAX2:-0.312092023774;OCT4_SOX2{dimer}:-0.322057518939;DMAP1_NCOR{1,2}_SMARC:-0.329961686172;PRRX1,2:-0.33780775653;MZF1:-0.347304320111;RFX1:-0.364589791846;KLF4:-0.375309140209;TAL1_TCF{3,4,12}:-0.380921394019;NR1H4:-0.39548926316;RREB1:-0.402181256879;SMAD1..7,9:-0.407569798798;ATF6:-0.408316900078;NFKB1_REL_RELA:-0.412867829834;ATF2:-0.433528894305;RBPJ:-0.446394038298;HIF1A:-0.454793738031;EVI1:-0.475562110353;HMGA1,2:-0.530407969588;RUNX1..3:-0.543412333706;HLF:-0.544743780787;TGIF1:-0.553813674403;NR6A1:-0.554996646806;XBP1:-0.558700594715;CREB1:-0.565403861673;RXRA_VDR{dimer}:-0.566379176473;SNAI1..3:-0.572289958283;PRDM1:-0.606104681414;JUN:-0.607481234837;AIRE:-0.612040438262;T:-0.635756819273;ZBTB16:-0.646882201419;TLX2:-0.646924565428;CEBPA,B_DDIT3:-0.646964562489;TBX4,5:-0.649502353311;MYBL2:-0.654477831769;FOX{D1,D2}:-0.656145064626;HSF1,2:-0.656940053567;HMX1:-0.658334214233;VSX1,2:-0.664994066389;FOXO1,3,4:-0.675746668734;TOPORS:-0.676248790222;PAX3,7:-0.681586551593;POU5F1:-0.70344144285;FOXP1:-0.723112947012;FOX{F1,F2,J1}:-0.726498892601;ELK1,4_GABP{A,B1}:-0.728393895382;SREBF1,2:-0.741184841691;NKX3-2:-0.754265025047;FOXP3:-0.763213536021;MYFfamily:-0.766590779918;IRF7:-0.776217174094;IRF1,2:-0.807221802243;ZNF384:-0.812309039568;DBP:-0.81249321488;FOXN1:-0.813067696854;HOX{A6,A7,B6,B7}:-0.824938572601;NFIL3:-0.836084308031;ZEB1:-0.854019811914;STAT1,3:-0.888922253782;HOXA9_MEIS1:-0.935823439128;EP300:-0.944729644076;NKX2-1,4:-0.957322706692;ATF4:-0.962157131532;PAX4:-0.984841839976;AHR_ARNT_ARNT2:-0.996131105631;BPTF:-1.02309154538;HOX{A4,D4}:-1.02499732147;MAFB:-1.03586788788;ATF5_CREB3:-1.08922655273;RFX2..5_RFXANK_RFXAP:-1.13236449143;PDX1:-1.13957754037;NFIX:-1.16939835591;CDX1,2,4:-1.20899579428;NKX6-1,2:-1.36243943632;NKX3-1:-1.68127065852 | |top_motifs=SOX{8,9,10}:2.05617083491;RXR{A,B,G}:1.38956455004;TLX1..3_NFIC{dimer}:1.03060474654;SOX2:1.01642716747;ONECUT1,2:1.01292525946;NFATC1..3:0.895351892066;PAX8:0.894594289454;TFAP2{A,C}:0.891447233261;IKZF2:0.856063221986;AR:0.850409883585;XCPE1{core}:0.845377348433;PAX6:0.816679805226;GTF2A1,2:0.816032364627;TFDP1:0.816012286315;GATA6:0.777901566403;HIC1:0.741310145125;ZFP161:0.707424546504;POU3F1..4:0.697770078601;EN1,2:0.674529807286;HBP1_HMGB_SSRP1_UBTF:0.660358294311;PAX1,9:0.639877367846;HES1:0.615020086044;TFAP4:0.59993264468;SOX17:0.599259491349;TFAP2B:0.578664014851;LEF1_TCF7_TCF7L1,2:0.564622564518;IKZF1:0.543507742836;ETS1,2:0.522032971617;TP53:0.49394614862;ARID5B:0.480448504798;FOXL1:0.458643157629;SOX5:0.453439855266;SPIB:0.448853105596;ELF1,2,4:0.442145612832;ALX1:0.437730067841;ZNF148:0.431652774189;FOX{I1,J2}:0.40649091985;NR5A1,2:0.365114114675;SP1:0.344898062993;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.320823188972;SPZ1:0.302388918397;EGR1..3:0.281549143226;MYB:0.28121391911;REST:0.266293747732;BACH2:0.259346419262;UFEwm:0.254320369729;ADNP_IRX_SIX_ZHX:0.248354624817;bHLH_family:0.230703798694;ZBTB6:0.228947173627;POU1F1:0.223494605876;NFE2:0.217892784227;TEAD1:0.208869368133;MTE{core}:0.200220546287;GATA4:0.193467530218;E2F1..5:0.187385960502;GFI1:0.175429080761;ZIC1..3:0.174235310408;FOS_FOS{B,L1}_JUN{B,D}:0.171536877087;GZF1:0.160817986187;PPARG:0.134125866445;MED-1{core}:0.130115490397;NANOG{mouse}:0.125495328703;FOSL2:0.113695478257;ZNF143:0.112789831426;PAX5:0.106149252218;NKX2-2,8:0.0882815967741;YY1:0.0878091980212;TBP:0.085156255357;ZNF423:0.0744087244447;GFI1B:0.0738943199183;ZNF238:0.0719270786586;HNF4A_NR2F1,2:0.0616098749097;CRX:0.0607365102474;HOX{A5,B5}:0.0492222559411;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0383344282189;FOXA2:0.0277332575207;POU2F1..3:0.0245917345443;NFE2L1:0.0235142386168;PATZ1:0.0188943073582;GLI1..3:0.0159817264276;NR3C1:0.0157419298511;EBF1:0.000204375726114;NFY{A,B,C}:-0.0133267813892;ESRRA:-0.0142769682752;NRF1:-0.0236800276116;PITX1..3:-0.0276263866672;POU6F1:-0.0333138753825;NANOG:-0.0537926393933;LMO2:-0.0596394580915;TFCP2:-0.0734134076121;PBX1:-0.0747031678633;GCM1,2:-0.0789931593815;GTF2I:-0.0795395634277;SPI1:-0.0818455750864;ALX4:-0.0890663475281;NFE2L2:-0.0945441433271;RORA:-0.0982018255315;FOXD3:-0.0983356949432;NHLH1,2:-0.101837054825;MAZ:-0.108197748467;MYOD1:-0.142066395913;SRF:-0.144130385234;STAT5{A,B}:-0.171265014095;HAND1,2:-0.175461646971;CDC5L:-0.176147903334;BREu{core}:-0.179809200521;MTF1:-0.20664589391;STAT2,4,6:-0.208448030321;LHX3,4:-0.209640334554;TEF:-0.214166823202;FOXM1:-0.218235994388;HNF1A:-0.232239679525;MEF2{A,B,C,D}:-0.233326504724;FOXQ1:-0.240669880801;ESR1:-0.243355230453;NKX2-3_NKX2-5:-0.265848900489;CUX2:-0.287697576072;PAX2:-0.312092023774;OCT4_SOX2{dimer}:-0.322057518939;DMAP1_NCOR{1,2}_SMARC:-0.329961686172;PRRX1,2:-0.33780775653;MZF1:-0.347304320111;RFX1:-0.364589791846;KLF4:-0.375309140209;TAL1_TCF{3,4,12}:-0.380921394019;NR1H4:-0.39548926316;RREB1:-0.402181256879;SMAD1..7,9:-0.407569798798;ATF6:-0.408316900078;NFKB1_REL_RELA:-0.412867829834;ATF2:-0.433528894305;RBPJ:-0.446394038298;HIF1A:-0.454793738031;EVI1:-0.475562110353;HMGA1,2:-0.530407969588;RUNX1..3:-0.543412333706;HLF:-0.544743780787;TGIF1:-0.553813674403;NR6A1:-0.554996646806;XBP1:-0.558700594715;CREB1:-0.565403861673;RXRA_VDR{dimer}:-0.566379176473;SNAI1..3:-0.572289958283;PRDM1:-0.606104681414;JUN:-0.607481234837;AIRE:-0.612040438262;T:-0.635756819273;ZBTB16:-0.646882201419;TLX2:-0.646924565428;CEBPA,B_DDIT3:-0.646964562489;TBX4,5:-0.649502353311;MYBL2:-0.654477831769;FOX{D1,D2}:-0.656145064626;HSF1,2:-0.656940053567;HMX1:-0.658334214233;VSX1,2:-0.664994066389;FOXO1,3,4:-0.675746668734;TOPORS:-0.676248790222;PAX3,7:-0.681586551593;POU5F1:-0.70344144285;FOXP1:-0.723112947012;FOX{F1,F2,J1}:-0.726498892601;ELK1,4_GABP{A,B1}:-0.728393895382;SREBF1,2:-0.741184841691;NKX3-2:-0.754265025047;FOXP3:-0.763213536021;MYFfamily:-0.766590779918;IRF7:-0.776217174094;IRF1,2:-0.807221802243;ZNF384:-0.812309039568;DBP:-0.81249321488;FOXN1:-0.813067696854;HOX{A6,A7,B6,B7}:-0.824938572601;NFIL3:-0.836084308031;ZEB1:-0.854019811914;STAT1,3:-0.888922253782;HOXA9_MEIS1:-0.935823439128;EP300:-0.944729644076;NKX2-1,4:-0.957322706692;ATF4:-0.962157131532;PAX4:-0.984841839976;AHR_ARNT_ARNT2:-0.996131105631;BPTF:-1.02309154538;HOX{A4,D4}:-1.02499732147;MAFB:-1.03586788788;ATF5_CREB3:-1.08922655273;RFX2..5_RFXANK_RFXAP:-1.13236449143;PDX1:-1.13957754037;NFIX:-1.16939835591;CDX1,2,4:-1.20899579428;NKX6-1,2:-1.36243943632;NKX3-1:-1.68127065852 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11416-118F3;search_select_hide=table117:FF:11416-118F3 | |||
}} | }} | ||
Latest revision as of 17:59, 4 June 2020
| Name: | Endothelial Cells - Vein, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12026 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12026
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12026
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.474 |
| 10 | 10 | 0.0622 |
| 100 | 100 | 0.778 |
| 101 | 101 | 0.0716 |
| 102 | 102 | 0.879 |
| 103 | 103 | 0.551 |
| 104 | 104 | 0.859 |
| 105 | 105 | 0.303 |
| 106 | 106 | 0.649 |
| 107 | 107 | 0.0981 |
| 108 | 108 | 0.741 |
| 109 | 109 | 0.227 |
| 11 | 11 | 0.435 |
| 110 | 110 | 0.274 |
| 111 | 111 | 0.865 |
| 112 | 112 | 0.534 |
| 113 | 113 | 0.51 |
| 114 | 114 | 0.666 |
| 115 | 115 | 0.735 |
| 116 | 116 | 0.831 |
| 117 | 117 | 0.785 |
| 118 | 118 | 0.84 |
| 119 | 119 | 0.629 |
| 12 | 12 | 0.42 |
| 120 | 120 | 0.00404 |
| 121 | 121 | 0.735 |
| 122 | 122 | 0.834 |
| 123 | 123 | 0.00901 |
| 124 | 124 | 0.00679 |
| 125 | 125 | 0.828 |
| 126 | 126 | 0.751 |
| 127 | 127 | 0.938 |
| 128 | 128 | 0.466 |
| 129 | 129 | 0.408 |
| 13 | 13 | 0.845 |
| 130 | 130 | 0.704 |
| 131 | 131 | 0.575 |
| 132 | 132 | 0.472 |
| 133 | 133 | 0.578 |
| 134 | 134 | 0.58 |
| 135 | 135 | 0.186 |
| 136 | 136 | 0.0215 |
| 137 | 137 | 0.0409 |
| 138 | 138 | 0.97 |
| 139 | 139 | 0.874 |
| 14 | 14 | 0.334 |
| 140 | 140 | 0.553 |
| 141 | 141 | 0.565 |
| 142 | 142 | 0.615 |
| 143 | 143 | 0.0654 |
| 144 | 144 | 0.384 |
| 145 | 145 | 0.27 |
| 146 | 146 | 0.204 |
| 147 | 147 | 0.2 |
| 148 | 148 | 0.0667 |
| 149 | 149 | 0.182 |
| 15 | 15 | 0.708 |
| 150 | 150 | 0.131 |
| 151 | 151 | 0.673 |
| 152 | 152 | 0.0321 |
| 153 | 153 | 0.0058 |
| 154 | 154 | 0.36 |
| 155 | 155 | 0.253 |
| 156 | 156 | 0.334 |
| 157 | 157 | 0.265 |
| 158 | 158 | 0.0812 |
| 159 | 159 | 0.616 |
| 16 | 16 | 0.786 |
| 160 | 160 | 0.191 |
| 161 | 161 | 0.0366 |
| 162 | 162 | 0.768 |
| 163 | 163 | 0.872 |
| 164 | 164 | 0.526 |
| 165 | 165 | 0.448 |
| 166 | 166 | 0.0868 |
| 167 | 167 | 0.108 |
| 168 | 168 | 0.956 |
| 169 | 169 | 0.335 |
| 17 | 17 | 0.529 |
| 18 | 18 | 0.768 |
| 19 | 19 | 0.985 |
| 2 | 2 | 0.789 |
| 20 | 20 | 0.202 |
| 21 | 21 | 0.723 |
| 22 | 22 | 0.421 |
| 23 | 23 | 0.654 |
| 24 | 24 | 0.887 |
| 25 | 25 | 0.26 |
| 26 | 26 | 0.661 |
| 27 | 27 | 0.979 |
| 28 | 28 | 0.101 |
| 29 | 29 | 0.74 |
| 3 | 3 | 0.449 |
| 30 | 30 | 0.86 |
| 31 | 31 | 0.924 |
| 32 | 32 | 0.324 |
| 33 | 33 | 0.572 |
| 34 | 34 | 0.105 |
| 35 | 35 | 0.144 |
| 36 | 36 | 0.472 |
| 37 | 37 | 0.766 |
| 38 | 38 | 0.951 |
| 39 | 39 | 0.48 |
| 4 | 4 | 0.959 |
| 40 | 40 | 0.136 |
| 41 | 41 | 0.0565 |
| 42 | 42 | 0.713 |
| 43 | 43 | 0.339 |
| 44 | 44 | 0.925 |
| 45 | 45 | 0.624 |
| 46 | 46 | 0.688 |
| 47 | 47 | 0.757 |
| 48 | 48 | 0.324 |
| 49 | 49 | 0.19 |
| 5 | 5 | 0.53 |
| 50 | 50 | 0.909 |
| 51 | 51 | 0.915 |
| 52 | 52 | 0.27 |
| 53 | 53 | 0.174 |
| 54 | 54 | 0.889 |
| 55 | 55 | 0.143 |
| 56 | 56 | 0.885 |
| 57 | 57 | 0.772 |
| 58 | 58 | 0.0165 |
| 59 | 59 | 0.648 |
| 6 | 6 | 0.257 |
| 60 | 60 | 0.235 |
| 61 | 61 | 0.911 |
| 62 | 62 | 0.131 |
| 63 | 63 | 0.883 |
| 64 | 64 | 0.918 |
| 65 | 65 | 0.965 |
| 66 | 66 | 0.312 |
| 67 | 67 | 0.959 |
| 68 | 68 | 0.0767 |
| 69 | 69 | 0.433 |
| 7 | 7 | 0.617 |
| 70 | 70 | 0.179 |
| 71 | 71 | 0.0262 |
| 72 | 72 | 0.914 |
| 73 | 73 | 0.00229 |
| 74 | 74 | 0.285 |
| 75 | 75 | 0.898 |
| 76 | 76 | 0.512 |
| 77 | 77 | 0.766 |
| 78 | 78 | 0.902 |
| 79 | 79 | 0.292 |
| 8 | 8 | 0.0734 |
| 80 | 80 | 0.68 |
| 81 | 81 | 0.163 |
| 82 | 82 | 0.378 |
| 83 | 83 | 0.362 |
| 84 | 84 | 0.516 |
| 85 | 85 | 0.825 |
| 86 | 86 | 0.755 |
| 87 | 87 | 0.0764 |
| 88 | 88 | 0.595 |
| 89 | 89 | 0.729 |
| 9 | 9 | 0.784 |
| 90 | 90 | 0.488 |
| 91 | 91 | 0.759 |
| 92 | 92 | 0.351 |
| 93 | 93 | 0.644 |
| 94 | 94 | 0.0799 |
| 95 | 95 | 0.179 |
| 96 | 96 | 0.653 |
| 97 | 97 | 0.653 |
| 98 | 98 | 0.985 |
| 99 | 99 | 0.00267 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12026
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000052 human endothelial cell of the vein sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
