FF:11525-119I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005232 | |DRA_sample_Accession=CAGE@SAMD00005232 | ||
|accession_numbers=CAGE;DRX008198;DRR009070;DRZ000495;DRZ001880 | |accession_numbers=CAGE;DRX008198;DRR009070;DRZ000495;DRZ001880;DRZ011845;DRZ013230 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0002494,CL:0000737,CL:0000746 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0002494,CL:0000737,CL:0000746 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.18!195.05!SOX18;;chr3:12330560..12330579,+!p1@PPARG!2.05!126.78!PPARG;;chr6:134210243..134210257,+!p1@TCF21!2.05!112.15!TCF21;;chr6:85474299..85474324,-!p1@TBX18!1.84!119.47!TBX18;;chr8:11561684..11561751,+!p1@GATA4!1.84!68.27!GATA4;;chr4:174451370..174451387,-!p1@HAND2!1.70!48.76!HAND2;;chr7:35293685..35293718,-!p1@TBX20!1.65!43.89!TBX20;;chr19:46801639..46801699,+!p1@HIF3A!1.63!41.45!HIF3A;;chr7:19157248..19157268,-!p1@TWIST1!1.60!104.84!TWIST1;;chr5:92918919..92918942,+!p1@NR2F1!1.53!141.41!NR2F1;;chr18:19749541..19749557,+!p1@GATA6!1.53!99.96!GATA6;;chr3:12329397..12329433,+!p2@PPARG!1.52!70.70!PPARG;;chr11:113930425..113930471,+!p1@ZBTB16!1.50!43.89!ZBTB16;;chr18:19749386..19749404,+!p2@GATA6!1.48!41.45!GATA6;;chr3:169381420..169381535,-!p1@MECOM!1.48!34.13!MECOM;;chr15:66994561..66994597,+!p2@SMAD6!1.45!63.39!SMAD6;;chr8:116681108..116681120,-!p9@TRPS1!1.39!29.26!TRPS1;;chr5:158526459..158526481,-!p2@EBF1!1.36!29.26!EBF1;;chr15:66994663..66994680,+!p1@SMAD6!1.34!48.76!SMAD6;;chr15:66994615..66994630,+!p3@SMAD6!1.33!29.26!SMAD6;;chr2:19558373..19558392,-!p1@OSR1!1.32!53.64!OSR1;;chr19:45971246..45971265,+!p1@FOSB!1.31!348.64!FOSB;;chr4:174450089..174450153,-!p2@HAND2!1.31!19.50!HAND2;;chr5:92919068..92919082,+!p5@NR2F1!1.29!21.94!NR2F1;;chr3:12329358..12329393,+!p3@PPARG!1.28!43.89!PPARG;;chr17:1959369..1959388,+!p2@HIC1!1.27!46.32!HIC1;;chr6:19837592..19837621,+!p1@ID4!1.25!99.96!ID4;;chr14:62162285..62162296,+!p3@HIF1A!1.25!85.33!HIF1A;;chr1:61548225..61548299,+!p1@NFIA!1.24!207.24!NFIA;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.94!PRRX1;;chr12:104531823..104531849,-!p5@NFYB!1.21!31.69!NFYB;;chr8:116681123..116681143,-!p4@TRPS1!1.21!29.26!TRPS1;;chr2:46524537..46524553,+!p1@EPAS1!1.20!1438.46!EPAS1;;chr2:45236540..45236577,-!p1@SIX2!1.19!14.63!SIX2;;chr10:131762504..131762555,-!p1@EBF3!1.19!14.63!EBF3;;chr9:4300050..4300118,-!p1@GLIS3!1.18!90.21!GLIS3;;chr14:62213827..62213853,+!p6@HIF1A!1.17!19.50!HIF1A;;chr1:158979872..158979898,+!p3@IFI16!1.16!41.45!IFI16;;chr7:44143997..44144008,+!p3@AEBP1!1.16!17.07!AEBP1;;chr1:23885981..23886002,-!p1@ID3!1.15!2243.02!ID3;;chr17:38498594..38498661,+!p2@RARA!1.13!41.45!RARA;;chr8:72756667..72756736,-!p2@MSC!1.13!19.50!MSC;;chr6:85474198..85474212,-!p3@TBX18!1.12!12.19!TBX18;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.12!12.19!SEBOX;;chr11:113930401..113930422,+!p3@ZBTB16!1.12!12.19!ZBTB16;;chr11:32457075..32457095,-!p1@WT1!1.12!12.19!WT1;;chr1:170633058..170633084,+!p5@PRRX1!1.12!12.19!PRRX1;;chr12:104531854..104531893,-!p2@NFYB!1.11!43.89!NFYB;;chr14:62162258..62162269,+!p2@HIF1A!1.10!112.15!HIF1A;;chr15:37392616..37392638,-!p2@MEIS2!1.10!36.57!MEIS2;;chr9:14314522..14314556,-!p3@NFIB!1.09!26.82!NFIB;;chr1:164528911..164528940,+!p7@PBX1!1.09!17.07!PBX1;;chr15:37392724..37392757,-!p1@MEIS2!1.08!51.20!MEIS2;;chr8:123793988..123794016,+!p1@ZHX2!1.08!19.50!ZHX2;;chr7:149470540..149470596,-!p2@ZNF467!1.08!14.63!ZNF467;;chr10:63809013..63809041,+!p3@ARID5B!1.07!60.95!ARID5B;;chr5:158526917..158526932,-!p1@EBF1!1.07!26.82!EBF1;;chr1:164528616..164528660,+!p5@PBX1!1.06!21.94!PBX1;;chr8:48650715..48650735,-!p1@CEBPD!1.04!1294.61!CEBPD;;chr2:239756739..239756755,+!p2@TWIST2!1.04!17.07!TWIST2;;chr13:37494365..37494381,-!p1@SMAD9!1.03!17.07!SMAD9;;chr2:85981008..85981025,+!p7@ATOH8!1.03!9.75!ATOH8;;chr2:85981027..85981047,+!p8@ATOH8!1.03!9.75!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!1.03!9.75!ATOH8;;chr4:174451350..174451363,-!p3@HAND2!1.03!9.75!HAND2;;chr15:31658288..31658338,+!p4@KLF13!1.03!9.75!KLF13;;chr6:85474219..85474228,-!p10@TBX18!1.03!9.75!TBX18;;chr1:119530493..119530572,-!p1@TBX15!1.03!9.75!TBX15;;chr9:14314476..14314487,-!p9@NFIB!1.03!9.75!NFIB;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.75!KDM5D;;chrX:106960180..106960197,-!p2@TSC22D3!1.02!36.57!TSC22D3;;chr9:73029219..73029289,-!p2@KLF9!1.02!29.26!KLF9;;chr2:46524897..46524911,+!p2@EPAS1!1.02!26.82!EPAS1;;chr8:72756063..72756125,-!p1@MSC!1.02!19.50!MSC;;chr18:19749517..19749531,+!p3@GATA6!1.02!17.07!GATA6;;chr20:50179368..50179392,-!p2@NFATC2!1.02!12.19!NFATC2;;chr14:75745523..75745537,+!p1@FOS!1.01!1111.76!FOS;;chr15:96874012..96874042,+!p2@NR2F2!1.01!85.33!NR2F2;;chr12:53774567..53774658,+!p2@SP1!1.01!46.32!SP1;;chr3:71179746..71179783,-!p7@FOXP1!1.01!31.69!FOXP1;;chr7:44143978..44143989,+!p2@AEBP1!1.01!17.07!AEBP1;;chr15:96881221..96881240,+!p19@NR2F2!1.01!12.19!NR2F2;;chr17:46621311..46621332,-!p8@HOXB2!1.01!12.19!HOXB2;;chr19:45260775..45260838,+!p5@BCL3!1.01!12.19!BCL3;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.51!SNAI2;;chr17:1958388..1958404,+!p1@HIC1!1.00!58.51!HIC1;;chr1:61548374..61548415,+!p4@NFIA!1.00!17.07!NFIA;;chr21:40177845..40177863,+!p1@ETS2!0.99!526.62!ETS2;;chr13:41240717..41240735,-!p2@FOXO1!0.99!60.95!FOXO1;;chr5:92918894..92918912,+!p2@NR2F1!0.99!29.26!NR2F1;;chr20:39946361..39946379,-!p2@ZHX3!0.99!26.82!ZHX3;;chr10:77161133..77161176,-!p3@ZNF503!0.99!19.50!ZNF503;;chr2:85980951..85981004,+!p1@ATOH8!0.99!14.63!ATOH8;;chr1:170632959..170632987,+!p4@PRRX1!0.99!9.75!PRRX1;;chr6:45296048..45296082,+!p1@RUNX2!0.98!9.75!RUNX2;;chr7:44143738..44143760,+!p4@AEBP1!0.98!9.75!AEBP1;;chr15:96876966..96877017,+!p12@NR2F2!0.97!12.19!NR2F2;;chr16:79634595..79634620,-!p2@MAF!0.95!14.63!MAF;;chr5:178368186..178368238,+!p1@ZNF454!0.95!14.63!ZNF454;;chr7:150945754..150945789,-!p2@SMARCD3!0.94!24.38!SMARCD3;;chr8:116680215..116680245,-!p6@TRPS1!0.94!12.19!TRPS1;;chrX:106960285..106960299,-!p1@TSC22D3!0.93!209.67!TSC22D3;;chr12:57504975..57505019,-!p2@STAT6!0.93!31.69!STAT6;;chr2:66662281..66662308,+!p1@MEIS1!0.93!26.82!MEIS1;;chr14:62213758..62213774,+!p8@HIF1A!0.93!9.75!HIF1A;;chr2:43453734..43453751,-!p1@ZFP36L2!0.92!809.44!ZFP36L2;;chr2:45236579..45236596,-!p2@SIX2!0.92!7.31!SIX2;;chr19:47523058..47523114,+!p1@NPAS1!0.92!7.31!NPAS1;;chr1:170633021..170633028,+!p27@PRRX1!0.92!7.31!PRRX1;;chr15:66994885..66994904,+!p7@SMAD6!0.92!7.31!SMAD6;;chr16:67198633..67198671,+!p1@HSF4!0.92!7.31!HSF4;;chr10:63816978..63816993,+!p12@ARID5B!0.92!7.31!ARID5B;;chr12:100867653..100867677,+!p2@NR1H4!0.92!7.31!NR1H4;;chrX:76937107..76937132,-!p17@ATRX!0.92!7.31!ATRX;;chr9:16727978..16728010,-!p6@BNC2!0.92!7.31!BNC2;;chr17:38219209..38219230,+!p1@THRA!0.90!95.08!THRA;;chr1:61547781..61547809,+!p5@NFIA!0.90!14.63!NFIA;;chr1:35656352..35656383,-!p7@SFPQ!0.90!12.19!SFPQ;;chr9:4300016..4300039,-!p2@GLIS3!0.90!12.19!GLIS3;;chr11:46299539..46299620,+!p2@CREB3L1!0.90!12.19!CREB3L1;;chr20:39317868..39317884,-!p1@MAFB!0.89!85.33!MAFB;;chr19:46272462..46272562,-!p1@SIX5!0.89!29.26!SIX5;;chr1:164528384..164528409,+!p3@PBX1!0.89!21.94!PBX1;;chr12:56401268..56401305,+!p1@IKZF4!0.89!14.63!IKZF4;;chr15:37392703..37392717,-!p8@MEIS2!0.89!9.75!MEIS2;;chr6:1612248..1612281,+!p2@FOXC1!0.89!7.31!FOXC1;;chr2:85980919..85980942,+!p4@ATOH8!0.89!7.31!ATOH8;;chr19:13106214..13106382,+!p1@NFIX!0.88!160.91!NFIX;;chr13:45151259..45151326,-!p2@TSC22D1!0.88!41.45!TSC22D1;;chr2:66662249..66662267,+!p2@MEIS1!0.88!26.82!MEIS1;;chr1:8483878..8483907,-!p4@RERE!0.88!26.82!RERE;;chr8:22550982..22550999,-!p1@EGR3!0.88!19.50!EGR3;;chr15:96874927..96874938,+!p8@NR2F2!0.88!14.63!NR2F2;;chr11:61520075..61520136,+!p1@C11orf9!0.88!14.63!C11orf9;;chr15:96869255..96869291,+!p6@NR2F2!0.88!12.19!NR2F2;;chr11:130184753..130184824,-!p1@ZBTB44!0.87!92.65!ZBTB44;;chr13:45151403..45151433,-!p5@TSC22D1!0.87!14.63!TSC22D1;;chr5:137801160..137801176,+!p1@EGR1!0.86!665.59!EGR1;;chr8:49833978..49833996,-!p1@SNAI2!0.86!136.53!SNAI2;;chr1:164528687..164528711,+!p6@PBX1!0.86!7.31!PBX1;;chr9:14314566..14314618,-!p1@NFIB!0.85!78.02!NFIB;;chr7:149470641..149470694,-!p1@ZNF467!0.85!29.26!ZNF467;;chr3:114819124..114819200,-!p3@ZBTB20!0.85!14.63!ZBTB20;;chr9:94186101..94186122,-!p1@NFIL3!0.84!87.77!NFIL3;;chr2:145277640..145277771,-!p1@ZEB2!0.84!85.33!ZEB2;;chr1:8484142..8484232,-!p10@RERE!0.84!17.07!RERE;;chr9:73028462..73028491,-!p8@KLF9!0.84!7.31!KLF9;;chr10:22022947..22022965,+!p7@MLLT10!0.84!7.31!MLLT10;;chr16:79634624..79634642,-!p1@MAF!0.83!24.38!MAF;;chr17:38498402..38498445,+!p3@RARA!0.83!21.94!RARA;;chr2:239756671..239756732,+!p1@TWIST2!0.83!19.50!TWIST2;;chr12:104532004..104532033,-!p4@NFYB!0.83!17.07!NFYB;;chr11:113930291..113930339,+!p2@ZBTB16!0.83!9.75!ZBTB16;;chr3:126076242..126076257,-!p1@KLF15!0.83!7.31!KLF15;;chr15:37392094..37392116,-!p6@MEIS2!0.83!7.31!MEIS2;;chr7:44143925..44143970,+!p1@AEBP1!0.82!136.53!AEBP1;;chr22:31742303..31742350,-!p1@PATZ1!0.82!65.83!PATZ1;;chr15:96873984..96873999,+!p3@NR2F2!0.82!43.89!NR2F2;;chr18:45457004..45457043,-!p3@SMAD2!0.82!26.82!SMAD2;;chr15:57511609..57511651,+!p2@TCF12!0.82!9.75!TCF12;;chr13:45151509..45151539,-!p6@TSC22D1!0.82!9.75!TSC22D1;;chr19:45261550..45261641,+!p6@BCL3!0.82!9.75!BCL3;;chr1:45805372..45805413,+!p4@TOE1!0.81!12.19!TOE1;;chr9:132427972..132428056,+!p1@PRRX2!0.81!7.31!PRRX2;;chr20:48599506..48599526,+!p1@SNAI1!0.80!36.57!SNAI1;;chr12:104531785..104531812,-!p3@NFYB!0.80!14.63!NFYB;;chr1:158969752..158969780,+!p6@IFI16!0.80!9.75!IFI16;;chr20:48809000..48809053,+!p12@CEBPB!0.80!7.31!CEBPB;;chr21:36260773..36260804,-!p7@RUNX1!0.80!7.31!RUNX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.79!65.83!PLAGL1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.79!56.08!GLIS2;;chr7:17338239..17338262,+!p2@AHR!0.79!41.45!AHR;;chr6:143266297..143266356,-!p1@HIVEP2!0.79!26.82!HIVEP2;;chr17:59477233..59477263,+!p1@TBX2!0.79!17.07!TBX2;;chr1:158979851..158979865,+!p5@IFI16!0.79!12.19!IFI16;;chr2:121493425..121493474,+!p1@GLI2!0.79!12.19!GLI2;;chr15:42749722..42749739,-!p2@ZFP106!0.79!9.75!ZFP106;;chr16:67881588..67881612,-!p2@CENPT!0.79!7.31!CENPT;;chr1:8877692..8877732,-!p1@RERE!0.78!43.89!RERE;;chr3:71179699..71179744,-!p2@FOXP1!0.78!41.45!FOXP1;;chr12:53614115..53614154,-!p1@RARG!0.78!29.26!RARG;;chr16:4323015..4323067,-!p2@TFAP4!0.78!14.63!TFAP4;;chr20:39946400..39946423,-!p3@ZHX3!0.78!9.75!ZHX3;;chr9:94186131..94186174,-!p2@NFIL3!0.77!43.89!NFIL3;;chr13:45151434..45151507,-!p3@TSC22D1!0.77!29.26!TSC22D1;;chrX:106960221..106960236,-!p3@TSC22D3!0.77!14.63!TS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| |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.18!195.05!SOX18;;chr3:12330560..12330579,+!p1@PPARG!2.05!126.78!PPARG;;chr6:134210243..134210257,+!p1@TCF21!2.05!112.15!TCF21;;chr6:85474299..85474324,-!p1@TBX18!1.84!119.47!TBX18;;chr8:11561684..11561751,+!p1@GATA4!1.84!68.27!GATA4;;chr4:174451370..174451387,-!p1@HAND2!1.70!48.76!HAND2;;chr7:35293685..35293718,-!p1@TBX20!1.65!43.89!TBX20;;chr19:46801639..46801699,+!p1@HIF3A!1.63!41.45!HIF3A;;chr7:19157248..19157268,-!p1@TWIST1!1.60!104.84!TWIST1;;chr5:92918919..92918942,+!p1@NR2F1!1.53!141.41!NR2F1;;chr18:19749541..19749557,+!p1@GATA6!1.53!99.96!GATA6;;chr3:12329397..12329433,+!p2@PPARG!1.52!70.70!PPARG;;chr11:113930425..113930471,+!p1@ZBTB16!1.50!43.89!ZBTB16;;chr18:19749386..19749404,+!p2@GATA6!1.48!41.45!GATA6;;chr3:169381420..169381535,-!p1@MECOM!1.48!34.13!MECOM;;chr15:66994561..66994597,+!p2@SMAD6!1.45!63.39!SMAD6;;chr8:116681108..116681120,-!p9@TRPS1!1.39!29.26!TRPS1;;chr5:158526459..158526481,-!p2@EBF1!1.36!29.26!EBF1;;chr15:66994663..66994680,+!p1@SMAD6!1.34!48.76!SMAD6;;chr15:66994615..66994630,+!p3@SMAD6!1.33!29.26!SMAD6;;chr2:19558373..19558392,-!p1@OSR1!1.32!53.64!OSR1;;chr19:45971246..45971265,+!p1@FOSB!1.31!348.64!FOSB;;chr4:174450089..174450153,-!p2@HAND2!1.31!19.50!HAND2;;chr5:92919068..92919082,+!p5@NR2F1!1.29!21.94!NR2F1;;chr3:12329358..12329393,+!p3@PPARG!1.28!43.89!PPARG;;chr17:1959369..1959388,+!p2@HIC1!1.27!46.32!HIC1;;chr6:19837592..19837621,+!p1@ID4!1.25!99.96!ID4;;chr14:62162285..62162296,+!p3@HIF1A!1.25!85.33!HIF1A;;chr1:61548225..61548299,+!p1@NFIA!1.24!207.24!NFIA;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.94!PRRX1;;chr12:104531823..104531849,-!p5@NFYB!1.21!31.69!NFYB;;chr8:116681123..116681143,-!p4@TRPS1!1.21!29.26!TRPS1;;chr2:46524537..46524553,+!p1@EPAS1!1.20!1438.46!EPAS1;;chr2:45236540..45236577,-!p1@SIX2!1.19!14.63!SIX2;;chr10:131762504..131762555,-!p1@EBF3!1.19!14.63!EBF3;;chr9:4300050..4300118,-!p1@GLIS3!1.18!90.21!GLIS3;;chr14:62213827..62213853,+!p6@HIF1A!1.17!19.50!HIF1A;;chr1:158979872..158979898,+!p3@IFI16!1.16!41.45!IFI16;;chr7:44143997..44144008,+!p3@AEBP1!1.16!17.07!AEBP1;;chr1:23885981..23886002,-!p1@ID3!1.15!2243.02!ID3;;chr17:38498594..38498661,+!p2@RARA!1.13!41.45!RARA;;chr8:72756667..72756736,-!p2@MSC!1.13!19.50!MSC;;chr6:85474198..85474212,-!p3@TBX18!1.12!12.19!TBX18;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.12!12.19!SEBOX;;chr11:113930401..113930422,+!p3@ZBTB16!1.12!12.19!ZBTB16;;chr11:32457075..32457095,-!p1@WT1!1.12!12.19!WT1;;chr1:170633058..170633084,+!p5@PRRX1!1.12!12.19!PRRX1;;chr12:104531854..104531893,-!p2@NFYB!1.11!43.89!NFYB;;chr14:62162258..62162269,+!p2@HIF1A!1.10!112.15!HIF1A;;chr15:37392616..37392638,-!p2@MEIS2!1.10!36.57!MEIS2;;chr9:14314522..14314556,-!p3@NFIB!1.09!26.82!NFIB;;chr1:164528911..164528940,+!p7@PBX1!1.09!17.07!PBX1;;chr15:37392724..37392757,-!p1@MEIS2!1.08!51.20!MEIS2;;chr8:123793988..123794016,+!p1@ZHX2!1.08!19.50!ZHX2;;chr7:149470540..149470596,-!p2@ZNF467!1.08!14.63!ZNF467;;chr10:63809013..63809041,+!p3@ARID5B!1.07!60.95!ARID5B;;chr5:158526917..158526932,-!p1@EBF1!1.07!26.82!EBF1;;chr1:164528616..164528660,+!p5@PBX1!1.06!21.94!PBX1;;chr8:48650715..48650735,-!p1@CEBPD!1.04!1294.61!CEBPD;;chr2:239756739..239756755,+!p2@TWIST2!1.04!17.07!TWIST2;;chr13:37494365..37494381,-!p1@SMAD9!1.03!17.07!SMAD9;;chr2:85981008..85981025,+!p7@ATOH8!1.03!9.75!ATOH8;;chr2:85981027..85981047,+!p8@ATOH8!1.03!9.75!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!1.03!9.75!ATOH8;;chr4:174451350..174451363,-!p3@HAND2!1.03!9.75!HAND2;;chr15:31658288..31658338,+!p4@KLF13!1.03!9.75!KLF13;;chr6:85474219..85474228,-!p10@TBX18!1.03!9.75!TBX18;;chr1:119530493..119530572,-!p1@TBX15!1.03!9.75!TBX15;;chr9:14314476..14314487,-!p9@NFIB!1.03!9.75!NFIB;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.75!KDM5D;;chrX:106960180..106960197,-!p2@TSC22D3!1.02!36.57!TSC22D3;;chr9:73029219..73029289,-!p2@KLF9!1.02!29.26!KLF9;;chr2:46524897..46524911,+!p2@EPAS1!1.02!26.82!EPAS1;;chr8:72756063..72756125,-!p1@MSC!1.02!19.50!MSC;;chr18:19749517..19749531,+!p3@GATA6!1.02!17.07!GATA6;;chr20:50179368..50179392,-!p2@NFATC2!1.02!12.19!NFATC2;;chr14:75745523..75745537,+!p1@FOS!1.01!1111.76!FOS;;chr15:96874012..96874042,+!p2@NR2F2!1.01!85.33!NR2F2;;chr12:53774567..53774658,+!p2@SP1!1.01!46.32!SP1;;chr3:71179746..71179783,-!p7@FOXP1!1.01!31.69!FOXP1;;chr7:44143978..44143989,+!p2@AEBP1!1.01!17.07!AEBP1;;chr15:96881221..96881240,+!p19@NR2F2!1.01!12.19!NR2F2;;chr17:46621311..46621332,-!p8@HOXB2!1.01!12.19!HOXB2;;chr19:45260775..45260838,+!p5@BCL3!1.01!12.19!BCL3;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.51!SNAI2;;chr17:1958388..1958404,+!p1@HIC1!1.00!58.51!HIC1;;chr1:61548374..61548415,+!p4@NFIA!1.00!17.07!NFIA;;chr21:40177845..40177863,+!p1@ETS2!0.99!526.62!ETS2;;chr13:41240717..41240735,-!p2@FOXO1!0.99!60.95!FOXO1;;chr5:92918894..92918912,+!p2@NR2F1!0.99!29.26!NR2F1;;chr20:39946361..39946379,-!p2@ZHX3!0.99!26.82!ZHX3;;chr10:77161133..77161176,-!p3@ZNF503!0.99!19.50!ZNF503;;chr2:85980951..85981004,+!p1@ATOH8!0.99!14.63!ATOH8;;chr1:170632959..170632987,+!p4@PRRX1!0.99!9.75!PRRX1;;chr6:45296048..45296082,+!p1@RUNX2!0.98!9.75!RUNX2;;chr7:44143738..44143760,+!p4@AEBP1!0.98!9.75!AEBP1;;chr15:96876966..96877017,+!p12@NR2F2!0.97!12.19!NR2F2;;chr16:79634595..79634620,-!p2@MAF!0.95!14.63!MAF;;chr5:178368186..178368238,+!p1@ZNF454!0.95!14.63!ZNF454;;chr7:150945754..150945789,-!p2@SMARCD3!0.94!24.38!SMARCD3;;chr8:116680215..116680245,-!p6@TRPS1!0.94!12.19!TRPS1;;chrX:106960285..106960299,-!p1@TSC22D3!0.93!209.67!TSC22D3;;chr12:57504975..57505019,-!p2@STAT6!0.93!31.69!STAT6;;chr2:66662281..66662308,+!p1@MEIS1!0.93!26.82!MEIS1;;chr14:62213758..62213774,+!p8@HIF1A!0.93!9.75!HIF1A;;chr2:43453734..43453751,-!p1@ZFP36L2!0.92!809.44!ZFP36L2;;chr2:45236579..45236596,-!p2@SIX2!0.92!7.31!SIX2;;chr19:47523058..47523114,+!p1@NPAS1!0.92!7.31!NPAS1;;chr1:170633021..170633028,+!p27@PRRX1!0.92!7.31!PRRX1;;chr15:66994885..66994904,+!p7@SMAD6!0.92!7.31!SMAD6;;chr16:67198633..67198671,+!p1@HSF4!0.92!7.31!HSF4;;chr10:63816978..63816993,+!p12@ARID5B!0.92!7.31!ARID5B;;chr12:100867653..100867677,+!p2@NR1H4!0.92!7.31!NR1H4;;chrX:76937107..76937132,-!p17@ATRX!0.92!7.31!ATRX;;chr9:16727978..16728010,-!p6@BNC2!0.92!7.31!BNC2;;chr17:38219209..38219230,+!p1@THRA!0.90!95.08!THRA;;chr1:61547781..61547809,+!p5@NFIA!0.90!14.63!NFIA;;chr1:35656352..35656383,-!p7@SFPQ!0.90!12.19!SFPQ;;chr9:4300016..4300039,-!p2@GLIS3!0.90!12.19!GLIS3;;chr11:46299539..46299620,+!p2@CREB3L1!0.90!12.19!CREB3L1;;chr20:39317868..39317884,-!p1@MAFB!0.89!85.33!MAFB;;chr19:46272462..46272562,-!p1@SIX5!0.89!29.26!SIX5;;chr1:164528384..164528409,+!p3@PBX1!0.89!21.94!PBX1;;chr12:56401268..56401305,+!p1@IKZF4!0.89!14.63!IKZF4;;chr15:37392703..37392717,-!p8@MEIS2!0.89!9.75!MEIS2;;chr6:1612248..1612281,+!p2@FOXC1!0.89!7.31!FOXC1;;chr2:85980919..85980942,+!p4@ATOH8!0.89!7.31!ATOH8;;chr19:13106214..13106382,+!p1@NFIX!0.88!160.91!NFIX;;chr13:45151259..45151326,-!p2@TSC22D1!0.88!41.45!TSC22D1;;chr2:66662249..66662267,+!p2@MEIS1!0.88!26.82!MEIS1;;chr1:8483878..8483907,-!p4@RERE!0.88!26.82!RERE;;chr8:22550982..22550999,-!p1@EGR3!0.88!19.50!EGR3;;chr15:96874927..96874938,+!p8@NR2F2!0.88!14.63!NR2F2;;chr11:61520075..61520136,+!p1@C11orf9!0.88!14.63!C11orf9;;chr15:96869255..96869291,+!p6@NR2F2!0.88!12.19!NR2F2;;chr11:130184753..130184824,-!p1@ZBTB44!0.87!92.65!ZBTB44;;chr13:45151403..45151433,-!p5@TSC22D1!0.87!14.63!TSC22D1;;chr5:137801160..137801176,+!p1@EGR1!0.86!665.59!EGR1;;chr8:49833978..49833996,-!p1@SNAI2!0.86!136.53!SNAI2;;chr1:164528687..164528711,+!p6@PBX1!0.86!7.31!PBX1;;chr9:14314566..14314618,-!p1@NFIB!0.85!78.02!NFIB;;chr7:149470641..149470694,-!p1@ZNF467!0.85!29.26!ZNF467;;chr3:114819124..114819200,-!p3@ZBTB20!0.85!14.63!ZBTB20;;chr9:94186101..94186122,-!p1@NFIL3!0.84!87.77!NFIL3;;chr2:145277640..145277771,-!p1@ZEB2!0.84!85.33!ZEB2;;chr1:8484142..8484232,-!p10@RERE!0.84!17.07!RERE;;chr9:73028462..73028491,-!p8@KLF9!0.84!7.31!KLF9;;chr10:22022947..22022965,+!p7@MLLT10!0.84!7.31!MLLT10;;chr16:79634624..79634642,-!p1@MAF!0.83!24.38!MAF;;chr17:38498402..38498445,+!p3@RARA!0.83!21.94!RARA;;chr2:239756671..239756732,+!p1@TWIST2!0.83!19.50!TWIST2;;chr12:104532004..104532033,-!p4@NFYB!0.83!17.07!NFYB;;chr11:113930291..113930339,+!p2@ZBTB16!0.83!9.75!ZBTB16;;chr3:126076242..126076257,-!p1@KLF15!0.83!7.31!KLF15;;chr15:37392094..37392116,-!p6@MEIS2!0.83!7.31!MEIS2;;chr7:44143925..44143970,+!p1@AEBP1!0.82!136.53!AEBP1;;chr22:31742303..31742350,-!p1@PATZ1!0.82!65.83!PATZ1;;chr15:96873984..96873999,+!p3@NR2F2!0.82!43.89!NR2F2;;chr18:45457004..45457043,-!p3@SMAD2!0.82!26.82!SMAD2;;chr15:57511609..57511651,+!p2@TCF12!0.82!9.75!TCF12;;chr13:45151509..45151539,-!p6@TSC22D1!0.82!9.75!TSC22D1;;chr19:45261550..45261641,+!p6@BCL3!0.82!9.75!BCL3;;chr1:45805372..45805413,+!p4@TOE1!0.81!12.19!TOE1;;chr9:132427972..132428056,+!p1@PRRX2!0.81!7.31!PRRX2;;chr20:48599506..48599526,+!p1@SNAI1!0.80!36.57!SNAI1;;chr12:104531785..104531812,-!p3@NFYB!0.80!14.63!NFYB;;chr1:158969752..158969780,+!p6@IFI16!0.80!9.75!IFI16;;chr20:48809000..48809053,+!p12@CEBPB!0.80!7.31!CEBPB;;chr21:36260773..36260804,-!p7@RUNX1!0.80!7.31!RUNX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.79!65.83!PLAGL1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.79!56.08!GLIS2;;chr7:17338239..17338262,+!p2@AHR!0.79!41.45!AHR;;chr6:143266297..143266356,-!p1@HIVEP2!0.79!26.82!HIVEP2;;chr17:59477233..59477263,+!p1@TBX2!0.79!17.07!TBX2;;chr1:158979851..158979865,+!p5@IFI16!0.79!12.19!IFI16;;chr2:121493425..121493474,+!p1@GLI2!0.79!12.19!GLI2;;chr15:42749722..42749739,-!p2@ZFP106!0.79!9.75!ZFP106;;chr16:67881588..67881612,-!p2@CENPT!0.79!7.31!CENPT;;chr1:8877692..8877732,-!p1@RERE!0.78!43.89!RERE;;chr3:71179699..71179744,-!p2@FOXP1!0.78!41.45!FOXP1;;chr12:53614115..53614154,-!p1@RARG!0.78!29.26!RARG;;chr16:4323015..4323067,-!p2@TFAP4!0.78!14.63!TFAP4;;chr20:39946400..39946423,-!p3@ZHX3!0.78!9.75!ZHX3;;chr9:94186131..94186174,-!p2@NFIL3!0.77!43.89!NFIL3;;chr13:45151434..45151507,-!p3@TSC22D1!0.77!29.26!TSC22D1;;chrX:106960221..106960236,-!p3@TSC22D3!0.77!14.63!TS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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000737;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000513 | |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000513 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor1.CNhs12341.11525-119I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor1.CNhs12341.11525-119I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor1.CNhs12341.11525-119I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor1.CNhs12341.11525-119I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor1.CNhs12341.11525-119I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11525-119I4 | |id=FF:11525-119I4 | ||
|is_a=EFO:0002091;;FF:0000118 | |is_a=EFO:0002091;;FF:0000118 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12341 | |library_id=CNhs12341 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs12341 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11525 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11525 | |||
|name=Cardiac Myocyte, donor1 | |name=Cardiac Myocyte, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12341,LSID913,release011,COMPLETED | |profile_hcage=CNhs12341,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 90: | Line 101: | ||
|top_motifs=AIRE:1.75555642959;NKX2-1,4:1.73542834555;FOXD3:1.7266243911;MYBL2:1.69371234907;HOX{A4,D4}:1.64783205505;STAT2,4,6:1.60431637015;POU6F1:1.59653679403;GLI1..3:1.58811281156;EP300:1.5328651686;HOX{A5,B5}:1.52549895317;EVI1:1.51954867568;DBP:1.48087585409;EBF1:1.40270867683;FOXA2:1.33276530567;AR:1.30499576809;TEF:1.30266495969;RXRA_VDR{dimer}:1.20405035867;STAT5{A,B}:1.18146497152;TLX1..3_NFIC{dimer}:1.16881836158;PATZ1:1.15946077024;NR3C1:1.14436504027;KLF4:1.12688073692;SMAD1..7,9:1.09341039322;GTF2I:1.09284330542;MYFfamily:1.03300283313;GATA4:1.0205048036;NKX6-1,2:1.00258809888;XBP1:0.981521317913;CDX1,2,4:0.967089923628;MTE{core}:0.959864371391;TFAP4:0.958145471494;SRF:0.939361109225;PDX1:0.937609179674;MAZ:0.905985006486;HMGA1,2:0.887549687586;RXR{A,B,G}:0.886281288709;TEAD1:0.875381264338;VSX1,2:0.839461089095;LHX3,4:0.816708006847;ZNF238:0.810383474782;RORA:0.792048777996;PAX3,7:0.782626123121;ALX4:0.761710398965;EN1,2:0.756211454983;POU3F1..4:0.73519091061;MED-1{core}:0.719988080509;UFEwm:0.699806879082;GFI1B:0.677812279337;FOXO1,3,4:0.669127058129;ZNF423:0.664750714933;ZNF384:0.658122062435;FOXP3:0.652102412946;ATF6:0.634609363481;ZIC1..3:0.593683535546;PRDM1:0.569640795659;NKX3-1:0.567984730153;NR6A1:0.565902380793;AHR_ARNT_ARNT2:0.55973587752;NFATC1..3:0.543702861167;TFCP2:0.529511884637;RREB1:0.523925015611;SPZ1:0.522660499184;ONECUT1,2:0.478883447126;HIC1:0.477325650099;MZF1:0.441998279766;ZNF148:0.438679115045;GTF2A1,2:0.416147423256;RBPJ:0.381624830396;GZF1:0.37639754977;ZBTB16:0.359617965304;TAL1_TCF{3,4,12}:0.358061496021;ZFP161:0.343017372596;HMX1:0.324209170264;SOX17:0.313729297992;HNF1A:0.279471573794;CDC5L:0.270973980057;NHLH1,2:0.267313874023;PAX6:0.266929580835;ESR1:0.260529546076;NR1H4:0.244005215717;TP53:0.216201913662;NFE2L1:0.211391750442;HNF4A_NR2F1,2:0.2113251382;T:0.204829108816;NFE2L2:0.199118712635;ADNP_IRX_SIX_ZHX:0.184030603099;HAND1,2:0.175423636404;FOX{D1,D2}:0.158434665833;ZBTB6:0.150449478149;FOXL1:0.146846051357;HSF1,2:0.140607428735;EGR1..3:0.129089330644;NANOG:0.116479329899;HLF:0.113529914138;IRF1,2:0.0932057684428;IKZF2:0.0928024186863;REST:0.0890889402928;GATA6:0.0628006127608;TFAP2{A,C}:0.0612945060463;IKZF1:0.0582330888094;BPTF:0.0472810361853;NFIX:0.00321253450658;IRF7:-0.0128281946175;MAFB:-0.0143968526285;CUX2:-0.0362600155236;MTF1:-0.0448609647095;NKX2-3_NKX2-5:-0.064088577468;TFAP2B:-0.0865239651775;NANOG{mouse}:-0.0988595721622;MEF2{A,B,C,D}:-0.103448103354;FOXM1:-0.110111155104;HOXA9_MEIS1:-0.136307355374;TFDP1:-0.143346344734;HBP1_HMGB_SSRP1_UBTF:-0.178010712711;PAX8:-0.180048200606;TLX2:-0.182913655426;RFX1:-0.18672303645;TBX4,5:-0.195551759941;NFE2:-0.205682462648;bHLH_family:-0.225347718375;BREu{core}:-0.237156158281;BACH2:-0.2445630267;TOPORS:-0.257018111253;RUNX1..3:-0.257200630923;PAX1,9:-0.258288768454;NFKB1_REL_RELA:-0.266780039564;TGIF1:-0.280084088997;DMAP1_NCOR{1,2}_SMARC:-0.289536436962;FOS_FOS{B,L1}_JUN{B,D}:-0.299244844065;PRRX1,2:-0.300880697686;PAX5:-0.325637733882;CRX:-0.34280584462;PAX4:-0.351157587802;ETS1,2:-0.382404924132;ESRRA:-0.38385836488;POU2F1..3:-0.391201800783;SOX5:-0.392747607597;TBP:-0.399560775818;SOX2:-0.40267222149;FOSL2:-0.405642443114;FOX{F1,F2,J1}:-0.448968131056;NFIL3:-0.450260672528;RFX2..5_RFXANK_RFXAP:-0.452313296151;SREBF1,2:-0.453506816583;ATF5_CREB3:-0.455420668613;LEF1_TCF7_TCF7L1,2:-0.456365689026;SP1:-0.465439920935;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.470687844346;POU5F1:-0.475115052033;NKX2-2,8:-0.475170133306;FOXP1:-0.48394871527;ATF4:-0.53934201085;SPIB:-0.561194147805;SPI1:-0.57500261784;PAX2:-0.605441618935;FOXQ1:-0.646466795879;JUN:-0.650671442492;CEBPA,B_DDIT3:-0.679562495528;SOX{8,9,10}:-0.711862957807;GCM1,2:-0.739331789341;XCPE1{core}:-0.804460513863;YY1:-0.840464594563;PITX1..3:-0.873797712093;NKX3-2:-0.92610030216;STAT1,3:-0.939636025633;ARID5B:-0.95296799489;E2F1..5:-1.01207778642;GFI1:-1.01994332392;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03163547755;HES1:-1.06696185127;NR5A1,2:-1.10642269138;ZEB1:-1.10925588927;SNAI1..3:-1.13579517926;HIF1A:-1.20088600857;OCT4_SOX2{dimer}:-1.20491436467;ATF2:-1.20956530136;FOX{I1,J2}:-1.23628032973;LMO2:-1.23840595669;ELF1,2,4:-1.24565543588;PBX1:-1.3000647209;ZNF143:-1.34150477667;NRF1:-1.41996062522;MYB:-1.4469962535;PPARG:-1.47989946873;FOXN1:-1.52618983365;POU1F1:-1.53107568734;MYOD1:-1.62497084323;ALX1:-1.6923867479;HOX{A6,A7,B6,B7}:-1.69486091848;CREB1:-1.74524857741;NFY{A,B,C}:-1.7701778948;ELK1,4_GABP{A,B1}:-2.13453515078 | |top_motifs=AIRE:1.75555642959;NKX2-1,4:1.73542834555;FOXD3:1.7266243911;MYBL2:1.69371234907;HOX{A4,D4}:1.64783205505;STAT2,4,6:1.60431637015;POU6F1:1.59653679403;GLI1..3:1.58811281156;EP300:1.5328651686;HOX{A5,B5}:1.52549895317;EVI1:1.51954867568;DBP:1.48087585409;EBF1:1.40270867683;FOXA2:1.33276530567;AR:1.30499576809;TEF:1.30266495969;RXRA_VDR{dimer}:1.20405035867;STAT5{A,B}:1.18146497152;TLX1..3_NFIC{dimer}:1.16881836158;PATZ1:1.15946077024;NR3C1:1.14436504027;KLF4:1.12688073692;SMAD1..7,9:1.09341039322;GTF2I:1.09284330542;MYFfamily:1.03300283313;GATA4:1.0205048036;NKX6-1,2:1.00258809888;XBP1:0.981521317913;CDX1,2,4:0.967089923628;MTE{core}:0.959864371391;TFAP4:0.958145471494;SRF:0.939361109225;PDX1:0.937609179674;MAZ:0.905985006486;HMGA1,2:0.887549687586;RXR{A,B,G}:0.886281288709;TEAD1:0.875381264338;VSX1,2:0.839461089095;LHX3,4:0.816708006847;ZNF238:0.810383474782;RORA:0.792048777996;PAX3,7:0.782626123121;ALX4:0.761710398965;EN1,2:0.756211454983;POU3F1..4:0.73519091061;MED-1{core}:0.719988080509;UFEwm:0.699806879082;GFI1B:0.677812279337;FOXO1,3,4:0.669127058129;ZNF423:0.664750714933;ZNF384:0.658122062435;FOXP3:0.652102412946;ATF6:0.634609363481;ZIC1..3:0.593683535546;PRDM1:0.569640795659;NKX3-1:0.567984730153;NR6A1:0.565902380793;AHR_ARNT_ARNT2:0.55973587752;NFATC1..3:0.543702861167;TFCP2:0.529511884637;RREB1:0.523925015611;SPZ1:0.522660499184;ONECUT1,2:0.478883447126;HIC1:0.477325650099;MZF1:0.441998279766;ZNF148:0.438679115045;GTF2A1,2:0.416147423256;RBPJ:0.381624830396;GZF1:0.37639754977;ZBTB16:0.359617965304;TAL1_TCF{3,4,12}:0.358061496021;ZFP161:0.343017372596;HMX1:0.324209170264;SOX17:0.313729297992;HNF1A:0.279471573794;CDC5L:0.270973980057;NHLH1,2:0.267313874023;PAX6:0.266929580835;ESR1:0.260529546076;NR1H4:0.244005215717;TP53:0.216201913662;NFE2L1:0.211391750442;HNF4A_NR2F1,2:0.2113251382;T:0.204829108816;NFE2L2:0.199118712635;ADNP_IRX_SIX_ZHX:0.184030603099;HAND1,2:0.175423636404;FOX{D1,D2}:0.158434665833;ZBTB6:0.150449478149;FOXL1:0.146846051357;HSF1,2:0.140607428735;EGR1..3:0.129089330644;NANOG:0.116479329899;HLF:0.113529914138;IRF1,2:0.0932057684428;IKZF2:0.0928024186863;REST:0.0890889402928;GATA6:0.0628006127608;TFAP2{A,C}:0.0612945060463;IKZF1:0.0582330888094;BPTF:0.0472810361853;NFIX:0.00321253450658;IRF7:-0.0128281946175;MAFB:-0.0143968526285;CUX2:-0.0362600155236;MTF1:-0.0448609647095;NKX2-3_NKX2-5:-0.064088577468;TFAP2B:-0.0865239651775;NANOG{mouse}:-0.0988595721622;MEF2{A,B,C,D}:-0.103448103354;FOXM1:-0.110111155104;HOXA9_MEIS1:-0.136307355374;TFDP1:-0.143346344734;HBP1_HMGB_SSRP1_UBTF:-0.178010712711;PAX8:-0.180048200606;TLX2:-0.182913655426;RFX1:-0.18672303645;TBX4,5:-0.195551759941;NFE2:-0.205682462648;bHLH_family:-0.225347718375;BREu{core}:-0.237156158281;BACH2:-0.2445630267;TOPORS:-0.257018111253;RUNX1..3:-0.257200630923;PAX1,9:-0.258288768454;NFKB1_REL_RELA:-0.266780039564;TGIF1:-0.280084088997;DMAP1_NCOR{1,2}_SMARC:-0.289536436962;FOS_FOS{B,L1}_JUN{B,D}:-0.299244844065;PRRX1,2:-0.300880697686;PAX5:-0.325637733882;CRX:-0.34280584462;PAX4:-0.351157587802;ETS1,2:-0.382404924132;ESRRA:-0.38385836488;POU2F1..3:-0.391201800783;SOX5:-0.392747607597;TBP:-0.399560775818;SOX2:-0.40267222149;FOSL2:-0.405642443114;FOX{F1,F2,J1}:-0.448968131056;NFIL3:-0.450260672528;RFX2..5_RFXANK_RFXAP:-0.452313296151;SREBF1,2:-0.453506816583;ATF5_CREB3:-0.455420668613;LEF1_TCF7_TCF7L1,2:-0.456365689026;SP1:-0.465439920935;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.470687844346;POU5F1:-0.475115052033;NKX2-2,8:-0.475170133306;FOXP1:-0.48394871527;ATF4:-0.53934201085;SPIB:-0.561194147805;SPI1:-0.57500261784;PAX2:-0.605441618935;FOXQ1:-0.646466795879;JUN:-0.650671442492;CEBPA,B_DDIT3:-0.679562495528;SOX{8,9,10}:-0.711862957807;GCM1,2:-0.739331789341;XCPE1{core}:-0.804460513863;YY1:-0.840464594563;PITX1..3:-0.873797712093;NKX3-2:-0.92610030216;STAT1,3:-0.939636025633;ARID5B:-0.95296799489;E2F1..5:-1.01207778642;GFI1:-1.01994332392;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03163547755;HES1:-1.06696185127;NR5A1,2:-1.10642269138;ZEB1:-1.10925588927;SNAI1..3:-1.13579517926;HIF1A:-1.20088600857;OCT4_SOX2{dimer}:-1.20491436467;ATF2:-1.20956530136;FOX{I1,J2}:-1.23628032973;LMO2:-1.23840595669;ELF1,2,4:-1.24565543588;PBX1:-1.3000647209;ZNF143:-1.34150477667;NRF1:-1.41996062522;MYB:-1.4469962535;PPARG:-1.47989946873;FOXN1:-1.52618983365;POU1F1:-1.53107568734;MYOD1:-1.62497084323;ALX1:-1.6923867479;HOX{A6,A7,B6,B7}:-1.69486091848;CREB1:-1.74524857741;NFY{A,B,C}:-1.7701778948;ELK1,4_GABP{A,B1}:-2.13453515078 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11525-119I4;search_select_hide=table117:FF:11525-119I4 | |||
}} | }} |
Latest revision as of 18:06, 4 June 2020
Name: | Cardiac Myocyte, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12341 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12341
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12341
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.89 |
10 | 10 | 0.889 |
100 | 100 | 0.584 |
101 | 101 | 0.654 |
102 | 102 | 0.145 |
103 | 103 | 0.0584 |
104 | 104 | 0.97 |
105 | 105 | 0.79 |
106 | 106 | 0.0122 |
107 | 107 | 3.57899e-4 |
108 | 108 | 0.477 |
109 | 109 | 0.406 |
11 | 11 | 0.835 |
110 | 110 | 0.753 |
111 | 111 | 0.968 |
112 | 112 | 0.176 |
113 | 113 | 0.784 |
114 | 114 | 0.124 |
115 | 115 | 0.414 |
116 | 116 | 0.722 |
117 | 117 | 0.585 |
118 | 118 | 0.363 |
119 | 119 | 0.146 |
12 | 12 | 0.652 |
120 | 120 | 0.908 |
121 | 121 | 0.886 |
122 | 122 | 0.185 |
123 | 123 | 0.478 |
124 | 124 | 0.378 |
125 | 125 | 0.395 |
126 | 126 | 0.595 |
127 | 127 | 0.527 |
128 | 128 | 7.27608e-4 |
129 | 129 | 0.257 |
13 | 13 | 0.324 |
130 | 130 | 0.567 |
131 | 131 | 0.646 |
132 | 132 | 0.716 |
133 | 133 | 0.514 |
134 | 134 | 0.463 |
135 | 135 | 0.867 |
136 | 136 | 0.0701 |
137 | 137 | 0.741 |
138 | 138 | 0.139 |
139 | 139 | 0.0245 |
14 | 14 | 0.59 |
140 | 140 | 0.00595 |
141 | 141 | 0.633 |
142 | 142 | 0.76 |
143 | 143 | 0.493 |
144 | 144 | 0.101 |
145 | 145 | 0.288 |
146 | 146 | 0.606 |
147 | 147 | 0.105 |
148 | 148 | 0.589 |
149 | 149 | 0.0337 |
15 | 15 | 0.106 |
150 | 150 | 0.358 |
151 | 151 | 0.143 |
152 | 152 | 0.848 |
153 | 153 | 0.193 |
154 | 154 | 0.894 |
155 | 155 | 0.253 |
156 | 156 | 0.678 |
157 | 157 | 0.313 |
158 | 158 | 0.113 |
159 | 159 | 0.76 |
16 | 16 | 0.222 |
160 | 160 | 0.0279 |
161 | 161 | 0.619 |
162 | 162 | 0.404 |
163 | 163 | 0.492 |
164 | 164 | 0.55 |
165 | 165 | 0.78 |
166 | 166 | 0.0257 |
167 | 167 | 0.595 |
168 | 168 | 0.219 |
169 | 169 | 0.0712 |
17 | 17 | 0.852 |
18 | 18 | 0.17 |
19 | 19 | 0.0745 |
2 | 2 | 0.078 |
20 | 20 | 0.152 |
21 | 21 | 0.342 |
22 | 22 | 0.154 |
23 | 23 | 0.0016 |
24 | 24 | 0.277 |
25 | 25 | 0.333 |
26 | 26 | 0.174 |
27 | 27 | 0.376 |
28 | 28 | 0.498 |
29 | 29 | 0.816 |
3 | 3 | 0.518 |
30 | 30 | 0.494 |
31 | 31 | 0.338 |
32 | 32 | 6.53836e-6 |
33 | 33 | 0.537 |
34 | 34 | 0.238 |
35 | 35 | 0.236 |
36 | 36 | 0.0506 |
37 | 37 | 0.767 |
38 | 38 | 0.863 |
39 | 39 | 0.231 |
4 | 4 | 0.788 |
40 | 40 | 0.0112 |
41 | 41 | 0.925 |
42 | 42 | 0.748 |
43 | 43 | 0.199 |
44 | 44 | 0.15 |
45 | 45 | 0.298 |
46 | 46 | 0.0597 |
47 | 47 | 0.796 |
48 | 48 | 0.47 |
49 | 49 | 0.223 |
5 | 5 | 0.146 |
50 | 50 | 0.77 |
51 | 51 | 0.609 |
52 | 52 | 0.18 |
53 | 53 | 0.586 |
54 | 54 | 0.846 |
55 | 55 | 0.0277 |
56 | 56 | 0.509 |
57 | 57 | 0.621 |
58 | 58 | 0.496 |
59 | 59 | 0.126 |
6 | 6 | 0.745 |
60 | 60 | 0.164 |
61 | 61 | 0.604 |
62 | 62 | 0.14 |
63 | 63 | 0.339 |
64 | 64 | 0.6 |
65 | 65 | 0.178 |
66 | 66 | 0.207 |
67 | 67 | 0.652 |
68 | 68 | 0.974 |
69 | 69 | 0.699 |
7 | 7 | 0.984 |
70 | 70 | 0.02 |
71 | 71 | 0.136 |
72 | 72 | 0.478 |
73 | 73 | 0.468 |
74 | 74 | 0.53 |
75 | 75 | 0.989 |
76 | 76 | 0.718 |
77 | 77 | 0.268 |
78 | 78 | 0.699 |
79 | 79 | 0.163 |
8 | 8 | 0.0852 |
80 | 80 | 0.835 |
81 | 81 | 0.192 |
82 | 82 | 0.0445 |
83 | 83 | 0.572 |
84 | 84 | 0.463 |
85 | 85 | 0.00875 |
86 | 86 | 0.456 |
87 | 87 | 0.2 |
88 | 88 | 0.361 |
89 | 89 | 0.0635 |
9 | 9 | 0.392 |
90 | 90 | 0.0813 |
91 | 91 | 0.0166 |
92 | 92 | 0.00178 |
93 | 93 | 0.371 |
94 | 94 | 0.368 |
95 | 95 | 0.0405 |
96 | 96 | 0.61 |
97 | 97 | 0.226 |
98 | 98 | 0.399 |
99 | 99 | 0.195 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12341
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000118 human cardiac myocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000737 (striated muscle cell)
0000746 (cardiac muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000118 (human cardiac myocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000513 (cardiac muscle myoblast)