FF:11627-122B7: Difference between revisions

Latest revision as of 18:12, 4 June 2020

Name:	Mesenchymal Stem Cells - amniotic membrane, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12104
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	amnion
dev stage	NA
sex	female
age	?
cell type	mesenchymal stem cell
cell line	NA
company	CET
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005766

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12104		CAGE		DRX008350		DRR009222

Accession ID Hg19

Library id		BAM		CTSS
CNhs12104		DRZ000647		DRZ002032

Accession ID Hg38

Library id		BAM		CTSS
CNhs12104		DRZ011997		DRZ013382

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005766

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10004.ATGTCA		sRNA-Seq		DRX037045		DRR041411

Accession ID Hg19

Library id		BAM		CTSS
SRhi10004.ATGTCA		DRZ007053

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0947
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.615
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0561
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.235
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.165
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.31
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.129
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0429
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.161
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0159
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.489
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0185
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0154
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.31
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.489
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.292
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12104

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.911
MA0003.1	MA0003.1	0.253
MA0004.1	MA0004.1	0.71
MA0006.1	MA0006.1	0.11
MA0007.1	MA0007.1	0.357
MA0009.1	MA0009.1	0.686
MA0014.1	MA0014.1	0.477
MA0017.1	MA0017.1	0.566
MA0018.2	MA0018.2	1.43312e-7
MA0019.1	MA0019.1	0.382
MA0024.1	MA0024.1	2.05184e-4
MA0025.1	MA0025.1	0.00936
MA0027.1	MA0027.1	0.795
MA0028.1	MA0028.1	0.00758
MA0029.1	MA0029.1	0.522
MA0030.1	MA0030.1	0.0425
MA0031.1	MA0031.1	0.087
MA0035.2	MA0035.2	0.692
MA0038.1	MA0038.1	0.0773
MA0039.2	MA0039.2	0.167
MA0040.1	MA0040.1	0.668
MA0041.1	MA0041.1	0.462
MA0042.1	MA0042.1	0.499
MA0043.1	MA0043.1	1.29419e-6
MA0046.1	MA0046.1	0.378
MA0047.2	MA0047.2	0.122
MA0048.1	MA0048.1	0.876
MA0050.1	MA0050.1	0.504
MA0051.1	MA0051.1	0.258
MA0052.1	MA0052.1	0.569
MA0055.1	MA0055.1	0.713
MA0057.1	MA0057.1	0.139
MA0058.1	MA0058.1	0.807
MA0059.1	MA0059.1	0.948
MA0060.1	MA0060.1	6.94485e-6
MA0061.1	MA0061.1	0.813
MA0062.2	MA0062.2	1.31729e-7
MA0065.2	MA0065.2	0.552
MA0066.1	MA0066.1	0.147
MA0067.1	MA0067.1	0.00684
MA0068.1	MA0068.1	0.308
MA0069.1	MA0069.1	0.231
MA0070.1	MA0070.1	0.678
MA0071.1	MA0071.1	0.159
MA0072.1	MA0072.1	0.646
MA0073.1	MA0073.1	0.985
MA0074.1	MA0074.1	0.476
MA0076.1	MA0076.1	9.8922e-5
MA0077.1	MA0077.1	0.917
MA0078.1	MA0078.1	0.791
MA0079.2	MA0079.2	0.487
MA0080.2	MA0080.2	2.40537e-6
MA0081.1	MA0081.1	0.0111
MA0083.1	MA0083.1	6.80638e-8
MA0084.1	MA0084.1	0.881
MA0087.1	MA0087.1	0.676
MA0088.1	MA0088.1	0.684
MA0090.1	MA0090.1	0.00199
MA0091.1	MA0091.1	0.00656
MA0092.1	MA0092.1	0.0908
MA0093.1	MA0093.1	0.701
MA0099.2	MA0099.2	0.816
MA0100.1	MA0100.1	0.224
MA0101.1	MA0101.1	0.0497
MA0102.2	MA0102.2	0.0448
MA0103.1	MA0103.1	0.237
MA0104.2	MA0104.2	0.124
MA0105.1	MA0105.1	0.453
MA0106.1	MA0106.1	0.0742
MA0107.1	MA0107.1	0.144
MA0108.2	MA0108.2	0.068
MA0111.1	MA0111.1	0.702
MA0112.2	MA0112.2	0.00194
MA0113.1	MA0113.1	0.913
MA0114.1	MA0114.1	0.535
MA0115.1	MA0115.1	0.36
MA0116.1	MA0116.1	0.784
MA0117.1	MA0117.1	0.495
MA0119.1	MA0119.1	0.148
MA0122.1	MA0122.1	0.196
MA0124.1	MA0124.1	0.0614
MA0125.1	MA0125.1	0.9
MA0131.1	MA0131.1	0.0394
MA0135.1	MA0135.1	0.677
MA0136.1	MA0136.1	1.46335e-9
MA0137.2	MA0137.2	0.00232
MA0138.2	MA0138.2	0.507
MA0139.1	MA0139.1	0.343
MA0140.1	MA0140.1	0.9
MA0141.1	MA0141.1	0.593
MA0142.1	MA0142.1	0.224
MA0143.1	MA0143.1	0.815
MA0144.1	MA0144.1	0.451
MA0145.1	MA0145.1	0.279
MA0146.1	MA0146.1	0.0855
MA0147.1	MA0147.1	0.0969
MA0148.1	MA0148.1	0.438
MA0149.1	MA0149.1	0.931
MA0150.1	MA0150.1	0.565
MA0152.1	MA0152.1	0.955
MA0153.1	MA0153.1	0.44
MA0154.1	MA0154.1	0.365
MA0155.1	MA0155.1	0.0726
MA0156.1	MA0156.1	1.56128e-7
MA0157.1	MA0157.1	0.194
MA0159.1	MA0159.1	0.194
MA0160.1	MA0160.1	0.911
MA0162.1	MA0162.1	0.0495
MA0163.1	MA0163.1	0.063
MA0164.1	MA0164.1	0.867
MA0258.1	MA0258.1	0.0881
MA0259.1	MA0259.1	0.193

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12104

Novel motif	Logo	P-value
1	1	0.941
10	10	0.8
100	100	0.76
101	101	0.797
102	102	0.164
103	103	0.507
104	104	0.367
105	105	0.633
106	106	0.0291
107	107	0.0592
108	108	0.235
109	109	0.328
11	11	0.28
110	110	0.296
111	111	0.697
112	112	0.168
113	113	0.972
114	114	0.0886
115	115	0.198
116	116	0.063
117	117	0.782
118	118	0.958
119	119	0.476
12	12	0.514
120	120	0.183
121	121	0.459
122	122	0.105
123	123	0.0599
124	124	0.836
125	125	0.767
126	126	0.994
127	127	0.516
128	128	0.292
129	129	0.997
13	13	0.502
130	130	0.344
131	131	0.287
132	132	0.726
133	133	0.959
134	134	0.799
135	135	0.491
136	136	0.879
137	137	0.311
138	138	0.3
139	139	0.64
14	14	0.707
140	140	0.684
141	141	0.332
142	142	0.985
143	143	0.302
144	144	0.766
145	145	0.364
146	146	0.675
147	147	0.0555
148	148	0.849
149	149	0.00253
15	15	0.868
150	150	0.554
151	151	0.396
152	152	0.0572
153	153	0.572
154	154	0.833
155	155	0.0517
156	156	0.474
157	157	0.77
158	158	0.189
159	159	0.731
16	16	0.0711
160	160	0.0743
161	161	0.463
162	162	0.497
163	163	0.934
164	164	0.418
165	165	0.0641
166	166	0.25
167	167	0.819
168	168	0.324
169	169	0.0171
17	17	0.232
18	18	0.181
19	19	0.00874
2	2	0.125
20	20	0.184
21	21	0.248
22	22	0.0598
23	23	0.0588
24	24	0.531
25	25	0.416
26	26	0.405
27	27	0.0631
28	28	0.475
29	29	0.886
3	3	0.461
30	30	0.286
31	31	0.59
32	32	4.62891e-7
33	33	0.711
34	34	0.414
35	35	0.79
36	36	0.122
37	37	0.0748
38	38	0.809
39	39	0.617
4	4	0.799
40	40	0.53
41	41	0.885
42	42	0.602
43	43	0.219
44	44	0.0403
45	45	0.309
46	46	0.12
47	47	0.62
48	48	0.591
49	49	0.362
5	5	0.676
50	50	0.495
51	51	0.59
52	52	0.694
53	53	0.634
54	54	0.387
55	55	0.982
56	56	0.5
57	57	0.548
58	58	0.762
59	59	0.0736
6	6	0.157
60	60	0.662
61	61	0.934
62	62	0.579
63	63	0.266
64	64	0.513
65	65	0.038
66	66	0.956
67	67	0.879
68	68	0.903
69	69	0.811
7	7	0.757
70	70	0.034
71	71	0.265
72	72	0.755
73	73	0.0423
74	74	0.0869
75	75	0.994
76	76	0.238
77	77	0.0808
78	78	0.916
79	79	0.00258
8	8	0.114
80	80	0.254
81	81	0.524
82	82	0.161
83	83	0.0424
84	84	0.453
85	85	0.0139
86	86	0.852
87	87	0.427
88	88	0.612
89	89	0.0192
9	9	0.277
90	90	0.44
91	91	0.318
92	92	0.0737
93	93	0.599
94	94	0.241
95	95	0.502
96	96	0.736
97	97	0.582
98	98	0.856
99	99	0.0121

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12104

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000276 human amniotic membrane cell- fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000276 (human amniotic membrane cell- fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008242
+|DRA_sample_Accession=CAGE@SAMD00005766
-|accession_numbers=CAGE;DRX008350;DRR009222;DRZ000647;DRZ002032
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005766
+|accession_numbers=CAGE;DRX008350;DRR009222;DRZ000647;DRZ002032;DRZ011997;DRZ013382
+|accession_numbers_RNASeq=sRNA-Seq;DRX037045;DRR041411;DRZ007053
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.88!74.89!HAND2;;chr7:27224842..27224872,-!p1@HOXA11!1.86!71.77!HOXA11;;chr7:27224795..27224840,-!p2@HOXA11!1.77!58.24!HOXA11;;chr2:176969228..176969260,+!p1@HOXD11!1.70!48.88!HOXD11;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.66!44.72!ZBED1;;chr15:96869255..96869291,+!p6@NR2F2!1.61!70.73!NR2F2;;chr2:176973498..176973524,+!p1@HOXD10!1.48!29.12!HOXD10;;chr15:96869222..96869251,+!p18@NR2F2!1.40!28.08!NR2F2;;chr17:1959369..1959388,+!p2@HIC1!1.39!60.32!HIC1;;chr11:46299199..46299233,+!p1@CREB3L1!1.36!111.29!CREB3L1;;chr15:96869165..96869183,+!p20@NR2F2!1.34!20.80!NR2F2;;chr2:176969179..176969226,+!p2@HOXD11!1.34!20.80!HOXD11;;chr3:138665937..138665968,-!p1@FOXL2!1.34!20.80!FOXL2;;chr4:174450089..174450153,-!p2@HAND2!1.29!18.72!HAND2;;chr15:96876966..96877017,+!p12@NR2F2!1.28!26.00!NR2F2;;chr3:128206762..128206781,-!p2@GATA2!1.25!102.97!GATA2;;chr11:46299539..46299620,+!p2@CREB3L1!1.25!28.08!CREB3L1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!19.76!TFAP2A;;chr15:96874145..96874166,+!p7@NR2F2!1.23!30.16!NR2F2;;chr15:96869206..96869220,+!p21@NR2F2!1.22!15.60!NR2F2;;chr5:92918919..92918942,+!p1@NR2F1!1.20!65.52!NR2F1;;chr15:96869114..96869160,+!p11@NR2F2!1.19!19.76!NR2F2;;chr10:119302232..119302265,+!p1@EMX2!1.19!14.56!EMX2;;chr2:177001290..177001315,+!p1@HOXD3!1.19!14.56!HOXD3;;chr3:128212033..128212051,-!p1@GATA2!1.19!14.56!GATA2;;chr3:138665760..138665772,-!p3@FOXL2!1.19!14.56!FOXL2;;chr1:170632959..170632987,+!p4@PRRX1!1.18!15.60!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!1.14!19.76!PITX1;;chr16:86544113..86544145,+!p1@FOXF1!1.13!15.60!FOXF1;;chr5:134369879..134369898,-!p2@PITX1!1.13!12.48!PITX1;;chr3:138665790..138665809,-!p4@FOXL2!1.13!12.48!FOXL2;;chr15:96869292..96869320,+!p15@NR2F2!1.12!17.68!NR2F2;;chr10:119302645..119302712,+!p3@EMX2!1.09!11.44!EMX2;;chr7:27213893..27213954,-!p1@HOXA10!1.09!11.44!HOXA10;;chr15:57511609..57511651,+!p2@TCF12!1.08!18.72!TCF12;;chr4:174451350..174451363,-!p3@HAND2!1.06!10.40!HAND2;;chr15:96874012..96874042,+!p2@NR2F2!1.02!87.37!NR2F2;;chr5:92919100..92919135,+!p3@NR2F1!1.02!11.44!NR2F1;;chr15:96874244..96874259,+!p5@NR2F2!1.01!22.88!NR2F2;;chr1:170633262..170633285,+!p3@PRRX1!1.00!10.40!PRRX1;;chr8:99956662..99956684,+!p1@OSR2!0.98!13.52!OSR2;;chr10:63809013..63809041,+!p3@ARID5B!0.97!47.84!ARID5B;;chr7:27192185..27192209,-!p1@HOXA3!0.97!8.32!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.97!8.32!HOXA9;;chr2:239756671..239756732,+!p1@TWIST2!0.96!27.04!TWIST2;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.52!TFAP2A;;chr12:80085061..80085119,-!p6@PAWR!0.94!12.48!PAWR;;chr15:96881221..96881240,+!p19@NR2F2!0.94!10.40!NR2F2;;chr2:66662895..66662907,+!p3@MEIS1!0.93!9.36!MEIS1;;chr7:28220198..28220269,-!p2@JAZF1!0.92!67.60!JAZF1;;chr2:176972000..176972025,+!p4@HOXD11!0.92!7.28!HOXD11;;chr3:138665774..138665786,-!p5@FOXL2!0.92!7.28!FOXL2;;chr17:59477233..59477263,+!p1@TBX2!0.91!22.88!TBX2;;chr15:96873984..96873999,+!p3@NR2F2!0.90!53.04!NR2F2;;chr12:115121962..115121987,-!p1@TBX3!0.89!59.28!TBX3;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.68!SNAI2;;chr2:66662281..66662308,+!p1@MEIS1!0.88!23.92!MEIS1;;chr15:37390850..37390909,-!p3@MEIS2!0.88!13.52!MEIS2;;chr11:12696071..12696086,+!p3@TEAD1!0.86!8.32!TEAD1;;chr14:29235961..29236008,+!p1@FOXG1!0.86!6.24!FOXG1;;chr6:10412576..10412599,-!p5@TFAP2A!0.86!6.24!TFAP2A;;chr7:27196217..27196246,-!p2@HOXA7!0.86!6.24!HOXA7;;chr1:170633058..170633084,+!p5@PRRX1!0.86!6.24!PRRX1;;chr2:176969097..176969109,+!p3@HOXD11!0.86!6.24!HOXD11;;chr15:96874927..96874938,+!p8@NR2F2!0.85!13.52!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.82!10.40!ZFP106;;chr15:96873921..96873946,+!p1@NR2F2!0.81!165.37!NR2F2;;chr1:170632285..170632309,+!p1@PRRX1!0.81!6.24!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!0.80!15.60!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!0.79!7.28!PRRX1;;chr5:92919068..92919082,+!p5@NR2F1!0.79!6.24!NR2F1;;chr5:158527104..158527135,-!p4@EBF1!0.79!5.20!EBF1;;chr5:92919312..92919334,+!p13@NR2F1!0.79!5.20!NR2F1;;chr10:114889045..114889074,+!p12@TCF7L2!0.79!5.20!TCF7L2;;chr10:119303078..119303169,+!p2@EMX2!0.79!5.20!EMX2;;chr15:80843484..80843499,+!p5@ARNT2!0.79!5.20!ARNT2;;chr2:176971685..176971700,+!p6@HOXD11!0.79!5.20!HOXD11;;chr2:176981526..176981543,+!p3@HOXD10!0.79!5.20!HOXD10;;chr1:200379104..200379128,-!p2@ZNF281!0.76!12.48!ZNF281;;chr12:80084279..80084293,-!p8@PAWR!0.76!8.32!PAWR;;chr7:44143997..44144008,+!p3@AEBP1!0.76!6.24!AEBP1;;chr5:92919375..92919438,+!p6@NR2F1!0.76!5.20!NR2F1;;chr10:63851319..63851332,+!p11@ARID5B!0.76!5.20!ARID5B;;chr17:1958388..1958404,+!p1@HIC1!0.75!32.24!HIC1;;chr15:96869511..96869525,+!p16@NR2F2!0.75!5.20!NR2F2;;chr19:31840130..31840160,-!p2@TSHZ3!0.74!7.28!TSHZ3;;chr6:10412392..10412409,-!p4@TFAP2A!0.74!5.20!TFAP2A;;chr10:63809106..63809127,+!p1@ARID5B!0.73!65.52!ARID5B;;chr2:185463247..185463263,+!p1@ZNF804A!0.73!8.32!ZNF804A;;chr4:81105027..81105039,+!p3@PRDM8!0.73!5.20!PRDM8;;chr9:35732647..35732678,+!p2@CREB3!0.71!26.00!CREB3;;chr10:63853436..638534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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002537;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11627-122B7
 |is_a=EFO:0002091;;FF:0000276
 |is_obsolete=
 |library_id=CNhs12104
-|library_id_phase_based=1:CNhs12104
+|library_id_phase_based=2:CNhs12104
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11627
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.ATGTCA.11627
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11627
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.ATGTCA.11627
 |name=Mesenchymal Stem Cells - amniotic membrane, donor2
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12104,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10004,,,
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@@ Line 67: / Line 82: @@
 |rna_tube_id=122B7
 |rna_weight_ug=44.9
+|rnaseq_library_id=SRhi10004.ATGTCA
 |sample_age=?
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11627-122B7;search_select_hide=table117:FF:11627-122B7
 }}

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