FF:11627-122B7: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (27 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005766 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005766 | ||
|accession_numbers=CAGE;DRX008350;DRR009222;DRZ000647;DRZ002032;DRZ011997;DRZ013382 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037045;DRR041411;DRZ007053 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000092,FF:0000101,FF:0000001,FF:0000276 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11627-122B7 | |id=FF:11627-122B7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000276 | ||
|is_obsolete= | |||
|library_id=CNhs12104 | |||
|library_id_phase_based=2:CNhs12104 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11627 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.ATGTCA.11627 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11627 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.ATGTCA.11627 | |||
|name=Mesenchymal Stem Cells - amniotic membrane, donor2 | |name=Mesenchymal Stem Cells - amniotic membrane, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12104,LSID839,release011,COMPLETED | |profile_hcage=CNhs12104,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.309645999537164,0,-0.160318030086386,0,0.0348127013310731,0.073933808517564,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156322989188736,0,0.154822999768582,0,0,0,0.694459839300507,0,0,0.3556150990046,0,0,0,0,0,0,0,0,0,0,0.309645999537164,0,0.146242926298139,0,0,0,0,0,0,0,0,0.220070823278897,0,0,0,0,0,0,0,0.391579327540857,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0584468268118252,-0.056374402927287,0,0,0,0,-0.0980353512377064,0.016345798967687,0,0,0,0.309645999537164,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.0428879081444021,-0.190637454583579,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0.00481452282320327,0.014485470031454,-0.143515142523472,0,0,0.173344126576666,0,0,0,0,0,0,0,0,0,0.486800866474655,0,-0.0504125515893149,0,0,0,0,0,0.00417376863875624,0,0.0700277832422215,0.241301738459795,0,0,0,0,0.128868174825989,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,0.211635202092146,-0.055712496781182,0,0,0,-0.108889825423575,0.413014755380645,0,0,0.27732899240844,0.062936225831072,0,0,0.967681213154465,0,0.437114040256521,0.179166260484223,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.0173425971418054,0,0,0,0,-0.0459999068503397,0,0,0.241634577470653,0.137835675486604,-0.0504776041863055,-0.435623491863338,0,-0.302389727009913,0.060126725835612,-0.658267302710106,0.178859873338573,0.467518884056081,0.298589969233615,0,0.072911492849868,-0.171351895686792,0,0.0359176640013894,0.0139797130205772,-0.136559569461933,-0.194054108425243,0,0,0.0637361279623377,0.291789394837843,0,-0.0315298818756722,-0.00154302569331122,-0.0103140653646676,0.00837546087733775,-0.010981149709075,0.09623997800528,-0.0680842406321462,-0.0395325284566706,0.157484280530625,0,0.089588043959388,0,0,-0.00747956488732604,0.108129683175065,-0.170991373680102,-0.127254484395217,0.0208906515089488,0.228697276378031,0.241301738459795,0,0.0857271044020267,0.17927412415441,0,0.200642685609338,-0.0902055420879496,0,0,0.0356937229819814,0,0,-0.0962866867347976,0.0754285903970536,0.255716127227918,0,0.0264649322400885,0,0.164997286129605,0,0.0158206583518654,-0.146009897457394,-0.019094282571648,-0.030058268504549,0,-0.105782277356789,0.0957558666204508,0.0210712192878604,-0.112748805854574,-0.0584468268118252,-0.241900244992269,-0.0934599183231057,0.0309521573639902,0.129117776289678,-0.0636207106949844,1.1320104396104,0,0.0858988846380373,-0.679498131621524,0,-0.184421060069259,0,0.115987454825141,0,-0.0361851293357552,0,0.0380915104130335,-0.54043375147324,-0.439289374580686,0.148902624383773,0,-0.052171942523492,-0.788130937773974,0,0,0,0,0.159278916202524,-0.20912427772912,-0.0568274280960075,0.0158335430893874,0,0.127977482690247,0,0,0.0095704057350285,-0.235476037764389,0,0.00405284006116313,-0.120631225429934,0.0107046922319254,-0.115971073434934,0,0,-0.645700337992725,0,0,0.00899266960918965,0,0.092891414230378,-0.253326341486756,0,0.290486034706057,0,0,-0.177527765965176,0,0.404953591975198,0,0,0.149227547561489,0,0,0,0,0.0377396546767609,0,0,0,0,0.0220554231847392,0,0,0.136876228268682,-0.354833330216448,0,0.244807620832344,0,0,0,0,0.309645999537164,-0.110803081130275,0,0.792417735568564,0.477663889450617,0.131540558866715,0.365554273107042,0,0,0,0,0.272848286229988,-0.203236562094724,0,0.177783293039532,0.309645999537164,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.140713943351166,0,0,0,-0.27695440160179,0,0,0,0,-0.104561979515019,0,0,0.205583502838971,0,0.111657916813525,-0.0815818795468414,0,0.148245908156207,0.326096714163718,0.431404081895378,0,0,0.353573601637332,0,0.154822999768582,-0.176178989883256,0,0.309645999537164,0,0,0,0,0,0,0,0.274257176383707,0,0,0,0,0,0,0,0,0,0,0,0.0781797196982017,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.0631960140379379,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,0.391579327540857,0,0,0,0,0.147867617035128,0,0,0.211209556589948,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.412317127997859,0,0,0,0,0,0,0,0.0348127013310731,0,0,0,0,-0.113884373708977,0,0,0,0.383775303994306,0,-0.160318030086386,0.309645999537164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690953565577541,0,0,0,0,0,0.295838238404595,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.061367927484915,0,0,0,0,0,0,0,0.694459839300507,0,0,-0.0920328098005262,0,0,0,0,0.309645999537164,0,-0.0436909962649783,0.380577335984968,0.104209197387419,0,0,0,-0.054385572482455,0,0,0.00864094186203235,0,0.421794301364561,0,0,0,0,0,0,0,0,0.309645999537164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156322989188736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488571688783462,0,0,0,0,0,0,0,0.120811636493165,0,0,0.309645999537164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488571688783462,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209491866476825,0,0,0,0,0,0,0,0,0.309645999537164,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50642913955956,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538807127280059,0,0,0.233717732382387,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.440141646557794,0,0,0,0,0,0,0,0,1.05693318207527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0434760597170859,-0.190637454583579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.354724076107398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00547568532238407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0.154822999768582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087049430105224,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3556150990046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154822999768582,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0.154822999768582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0324632171595276,0,0,-0.0422874684771159,0,-0.0614116215910666,0.159339109886914,0,0,0,0,0,0.0174356459101258,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0295739042141977,0,0.191539195064434,-0.397074688522015,0,0,0.486303366893009,0,0,0,0,0,-0.174992895090299,-0.395003008004622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216580258527979,0,0,0,-0.0568589461625992,-0.269475635594569,0,0.236084479076796,0,0,-0.16440771928821,0,0,0,-0.0959594073735869 | |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=122B7 | |rna_tube_id=122B7 | ||
|rna_weight_ug=44.9 | |rna_weight_ug=44.9 | ||
|rnaseq_library_id=SRhi10004.ATGTCA | |||
|sample_age=? | |sample_age=? | ||
|sample_category=primary cells | |||
|sample_cell_catalog=HMSC.AM-500 | |sample_cell_catalog=HMSC.AM-500 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.06814157935936e-206!GO:0005737;cytoplasm;2.03167465904422e-197!GO:0043226;organelle;2.555565395344e-153!GO:0043229;intracellular organelle;7.00366983323577e-153!GO:0043231;intracellular membrane-bound organelle;7.87553417647673e-151!GO:0043227;membrane-bound organelle;1.0941868376688e-150!GO:0044444;cytoplasmic part;1.71046880220815e-148!GO:0044422;organelle part;2.25938692733819e-126!GO:0044446;intracellular organelle part;6.24556609532934e-125!GO:0032991;macromolecular complex;5.51345560692413e-88!GO:0005515;protein binding;4.72034115680309e-72!GO:0005739;mitochondrion;2.08074692753694e-71!GO:0030529;ribonucleoprotein complex;5.82472014107093e-70!GO:0044237;cellular metabolic process;2.07996775701725e-68!GO:0044238;primary metabolic process;9.29967425807753e-67!GO:0043170;macromolecule metabolic process;6.59528854509639e-58!GO:0043233;organelle lumen;8.26163440453427e-58!GO:0031974;membrane-enclosed lumen;8.26163440453427e-58!GO:0031090;organelle membrane;1.44010254831757e-57!GO:0003723;RNA binding;4.03715527602952e-50!GO:0019538;protein metabolic process;8.90102348570552e-50!GO:0044428;nuclear part;1.43249981809708e-48!GO:0044429;mitochondrial part;1.40139334168321e-47!GO:0043234;protein complex;1.42484921397786e-46!GO:0005840;ribosome;6.6684593963139e-46!GO:0016043;cellular component organization and biogenesis;1.04830793308232e-45!GO:0044260;cellular macromolecule metabolic process;1.24086188778109e-44!GO:0044267;cellular protein metabolic process;1.55848897695624e-43!GO:0006412;translation;7.48665649986407e-43!GO:0015031;protein transport;1.37176412084686e-41!GO:0009058;biosynthetic process;1.89396864313152e-41!GO:0005829;cytosol;1.27351912911741e-40!GO:0031967;organelle envelope;1.41744013991728e-40!GO:0003735;structural constituent of ribosome;1.48836506471884e-40!GO:0033036;macromolecule localization;1.76512373716617e-40!GO:0031975;envelope;2.17012094658712e-40!GO:0005634;nucleus;5.50533887233602e-39!GO:0045184;establishment of protein localization;4.51747537108916e-38!GO:0008104;protein localization;8.72790697411072e-38!GO:0044249;cellular biosynthetic process;1.11327176294609e-36!GO:0009059;macromolecule biosynthetic process;1.50889829832999e-35!GO:0046907;intracellular transport;9.74264132642278e-35!GO:0033279;ribosomal subunit;1.02946983485261e-34!GO:0006396;RNA processing;3.35113644671159e-34!GO:0005740;mitochondrial envelope;2.10293916570726e-32!GO:0031966;mitochondrial membrane;5.84363741560708e-31!GO:0031981;nuclear lumen;1.57278443661747e-30!GO:0019866;organelle inner membrane;2.87849109482317e-30!GO:0006996;organelle organization and biogenesis;7.49742401397539e-29!GO:0016071;mRNA metabolic process;2.12985756342252e-28!GO:0005743;mitochondrial inner membrane;3.61837144712627e-28!GO:0006886;intracellular protein transport;7.23885286344568e-28!GO:0065003;macromolecular complex assembly;2.38826783254742e-26!GO:0008380;RNA splicing;1.16813779079132e-25!GO:0043283;biopolymer metabolic process;2.15335337771299e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.40436441991846e-25!GO:0022607;cellular component assembly;5.63797829016491e-25!GO:0006397;mRNA processing;1.85003421893668e-24!GO:0006119;oxidative phosphorylation;2.13520016902362e-24!GO:0005783;endoplasmic reticulum;2.94460494819493e-24!GO:0012505;endomembrane system;1.00303347914461e-23!GO:0043228;non-membrane-bound organelle;1.97952675572281e-23!GO:0043232;intracellular non-membrane-bound organelle;1.97952675572281e-23!GO:0044455;mitochondrial membrane part;1.41157848530701e-22!GO:0044445;cytosolic part;1.58147889969158e-22!GO:0051649;establishment of cellular localization;1.77500577357142e-22!GO:0051641;cellular localization;2.17580081077846e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.72796025587126e-22!GO:0010467;gene expression;3.31513952054263e-21!GO:0044432;endoplasmic reticulum part;1.07123366141037e-19!GO:0005654;nucleoplasm;1.41263012588761e-19!GO:0048770;pigment granule;3.62274200835978e-19!GO:0042470;melanosome;3.62274200835978e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.89338741868903e-19!GO:0016462;pyrophosphatase activity;7.66483279831883e-19!GO:0017111;nucleoside-triphosphatase activity;9.1958312481672e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;9.52274968393553e-19!GO:0005746;mitochondrial respiratory chain;1.28787122364585e-18!GO:0015934;large ribosomal subunit;1.4965245245915e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.54174627983758e-18!GO:0031980;mitochondrial lumen;2.90266989268559e-18!GO:0005759;mitochondrial matrix;2.90266989268559e-18!GO:0006457;protein folding;2.92716997219381e-18!GO:0051186;cofactor metabolic process;1.35714412750841e-17!GO:0005681;spliceosome;2.28094984238391e-17!GO:0015935;small ribosomal subunit;3.24168129788305e-17!GO:0000166;nucleotide binding;5.20977714186655e-17!GO:0005794;Golgi apparatus;1.14692982877321e-16!GO:0006259;DNA metabolic process;1.18800746122889e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.24477247371756e-16!GO:0044451;nucleoplasm part;2.63683725639597e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.79977537788696e-16!GO:0003954;NADH dehydrogenase activity;3.79977537788696e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.79977537788696e-16!GO:0043285;biopolymer catabolic process;9.04252750006328e-16!GO:0016874;ligase activity;1.0659685757185e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.09135547134653e-15!GO:0007049;cell cycle;4.36577891519142e-15!GO:0009057;macromolecule catabolic process;5.6490374635904e-15!GO:0006605;protein targeting;7.2516449645816e-15!GO:0044265;cellular macromolecule catabolic process;7.80569122857822e-15!GO:0044248;cellular catabolic process;1.29987560418768e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.32338998564028e-14!GO:0022618;protein-RNA complex assembly;1.5443772844934e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.61732020485318e-14!GO:0042773;ATP synthesis coupled electron transport;1.61732020485318e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.71188007017628e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.99100848650128e-14!GO:0045271;respiratory chain complex I;1.99100848650128e-14!GO:0005747;mitochondrial respiratory chain complex I;1.99100848650128e-14!GO:0006512;ubiquitin cycle;2.28894339068971e-14!GO:0008134;transcription factor binding;3.35836307849687e-14!GO:0005789;endoplasmic reticulum membrane;4.69390747723838e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.02383953316477e-14!GO:0048193;Golgi vesicle transport;5.61128068281634e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.92320998672811e-14!GO:0005761;mitochondrial ribosome;7.16293686709751e-14!GO:0000313;organellar ribosome;7.16293686709751e-14!GO:0009055;electron carrier activity;7.47836873647764e-14!GO:0030163;protein catabolic process;7.74988541775311e-14!GO:0019941;modification-dependent protein catabolic process;1.03237038814494e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.03237038814494e-13!GO:0044257;cellular protein catabolic process;1.12478540916987e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.06671415646164e-13!GO:0006732;coenzyme metabolic process;3.49389177275406e-13!GO:0051082;unfolded protein binding;4.07723810014798e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.9664670532454e-13!GO:0008135;translation factor activity, nucleic acid binding;6.18674962529789e-13!GO:0032553;ribonucleotide binding;1.17666754778698e-12!GO:0032555;purine ribonucleotide binding;1.17666754778698e-12!GO:0016192;vesicle-mediated transport;1.39064151948151e-12!GO:0017076;purine nucleotide binding;2.57741500706246e-12!GO:0043412;biopolymer modification;3.16306779077732e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.57849761442175e-12!GO:0005730;nucleolus;2.06520461721233e-11!GO:0022402;cell cycle process;2.45958626875052e-11!GO:0006464;protein modification process;4.93120604803316e-11!GO:0012501;programmed cell death;6.35398326963975e-11!GO:0005793;ER-Golgi intermediate compartment;6.84569664512019e-11!GO:0006915;apoptosis;1.69779696982243e-10!GO:0009259;ribonucleotide metabolic process;1.69779696982243e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.8676727065266e-10!GO:0016491;oxidoreductase activity;3.11552235678084e-10!GO:0003712;transcription cofactor activity;3.63159671783141e-10!GO:0006163;purine nucleotide metabolic process;3.75146788459243e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;4.0673788675709e-10!GO:0000375;RNA splicing, via transesterification reactions;4.0673788675709e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.0673788675709e-10!GO:0009150;purine ribonucleotide metabolic process;4.11314760519723e-10!GO:0042623;ATPase activity, coupled;4.29522283704585e-10!GO:0032559;adenyl ribonucleotide binding;4.39064982971503e-10!GO:0005524;ATP binding;5.52390928074582e-10!GO:0000278;mitotic cell cycle;6.09508412356144e-10!GO:0008565;protein transporter activity;6.45968609933469e-10!GO:0008219;cell death;6.88281740328537e-10!GO:0016265;death;6.88281740328537e-10!GO:0003743;translation initiation factor activity;7.02539092315437e-10!GO:0008639;small protein conjugating enzyme activity;1.01900602150561e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.174923711124e-09!GO:0030554;adenyl nucleotide binding;1.21763154257596e-09!GO:0016887;ATPase activity;1.48326077348077e-09!GO:0006413;translational initiation;1.56271326415592e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.67364370744616e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.82700243380142e-09!GO:0006164;purine nucleotide biosynthetic process;1.91744517648795e-09!GO:0004842;ubiquitin-protein ligase activity;1.95890481376917e-09!GO:0019787;small conjugating protein ligase activity;1.95890481376917e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.02325374970616e-09!GO:0009056;catabolic process;2.1905445351526e-09!GO:0005635;nuclear envelope;2.19138955322163e-09!GO:0015078;hydrogen ion transmembrane transporter activity;2.28762255726683e-09!GO:0009260;ribonucleotide biosynthetic process;2.52935183254469e-09!GO:0006446;regulation of translational initiation;2.6191534097396e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.67666703506479e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.67666703506479e-09!GO:0009141;nucleoside triphosphate metabolic process;2.72512919774116e-09!GO:0006974;response to DNA damage stimulus;2.88271630544982e-09!GO:0030120;vesicle coat;3.2776545459823e-09!GO:0030662;coated vesicle membrane;3.2776545459823e-09!GO:0031965;nuclear membrane;4.03079562468888e-09!GO:0015986;ATP synthesis coupled proton transport;4.1025548663327e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.1025548663327e-09!GO:0048523;negative regulation of cellular process;5.25889855484567e-09!GO:0044453;nuclear membrane part;5.5939610289414e-09!GO:0043687;post-translational protein modification;6.82669542439355e-09!GO:0051188;cofactor biosynthetic process;7.07672678778288e-09!GO:0046034;ATP metabolic process;7.40798020167879e-09!GO:0006913;nucleocytoplasmic transport;7.40798020167879e-09!GO:0019829;cation-transporting ATPase activity;7.44151295872183e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.61679188047875e-09!GO:0000074;regulation of progression through cell cycle;1.52779469004884e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.54305323287434e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.54305323287434e-08!GO:0051726;regulation of cell cycle;1.55871777458459e-08!GO:0051169;nuclear transport;1.65582713990837e-08!GO:0009117;nucleotide metabolic process;2.12470782818584e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.57779754974695e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.57779754974695e-08!GO:0007005;mitochondrion organization and biogenesis;2.63361939721913e-08!GO:0042254;ribosome biogenesis and assembly;2.88000251045042e-08!GO:0006461;protein complex assembly;3.64816981404773e-08!GO:0005773;vacuole;3.80274089271073e-08!GO:0044431;Golgi apparatus part;4.08868837684098e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.24177170664381e-08!GO:0006399;tRNA metabolic process;4.24177170664381e-08!GO:0005768;endosome;4.78379105662177e-08!GO:0031988;membrane-bound vesicle;4.96182192019579e-08!GO:0016881;acid-amino acid ligase activity;4.96182192019579e-08!GO:0016023;cytoplasmic membrane-bound vesicle;5.5092715727057e-08!GO:0006754;ATP biosynthetic process;5.92003723523261e-08!GO:0006753;nucleoside phosphate metabolic process;5.92003723523261e-08!GO:0003924;GTPase activity;6.3933150881318e-08!GO:0048475;coated membrane;9.16134560786216e-08!GO:0030117;membrane coat;9.16134560786216e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.34347728832968e-08!GO:0016469;proton-transporting two-sector ATPase complex;9.79137248175447e-08!GO:0048519;negative regulation of biological process;1.06729674175581e-07!GO:0009060;aerobic respiration;1.10955121218035e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.10955121218035e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.10955121218035e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.10955121218035e-07!GO:0005788;endoplasmic reticulum lumen;1.27616997660893e-07!GO:0016604;nuclear body;1.29441214382105e-07!GO:0017038;protein import;1.36130627551961e-07!GO:0016787;hydrolase activity;1.76372466199056e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.82400449719128e-07!GO:0043038;amino acid activation;1.99077358421615e-07!GO:0006418;tRNA aminoacylation for protein translation;1.99077358421615e-07!GO:0043039;tRNA aminoacylation;1.99077358421615e-07!GO:0065002;intracellular protein transport across a membrane;2.60003939588623e-07!GO:0045333;cellular respiration;2.69580435472971e-07!GO:0006091;generation of precursor metabolites and energy;2.92114474010566e-07!GO:0009719;response to endogenous stimulus;3.3261481759642e-07!GO:0006281;DNA repair;3.84466994879997e-07!GO:0051246;regulation of protein metabolic process;4.23172608716937e-07!GO:0051276;chromosome organization and biogenesis;4.23172608716937e-07!GO:0051187;cofactor catabolic process;4.50454937665788e-07!GO:0005798;Golgi-associated vesicle;4.51300331511722e-07!GO:0006323;DNA packaging;5.41190330906647e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.68585460416501e-07!GO:0006916;anti-apoptosis;6.20599045820812e-07!GO:0009109;coenzyme catabolic process;7.26560384864528e-07!GO:0000323;lytic vacuole;7.49085169075888e-07!GO:0005764;lysosome;7.49085169075888e-07!GO:0043067;regulation of programmed cell death;7.59426256107094e-07!GO:0006752;group transfer coenzyme metabolic process;7.67304359139823e-07!GO:0043069;negative regulation of programmed cell death;8.815384738861e-07!GO:0031982;vesicle;1.14772603555781e-06!GO:0009108;coenzyme biosynthetic process;1.15626887035186e-06!GO:0042981;regulation of apoptosis;1.21278287969867e-06!GO:0008026;ATP-dependent helicase activity;1.44384422139823e-06!GO:0031410;cytoplasmic vesicle;1.52734231479434e-06!GO:0031252;leading edge;1.69214121436272e-06!GO:0006099;tricarboxylic acid cycle;1.80274660928712e-06!GO:0046356;acetyl-CoA catabolic process;1.80274660928712e-06!GO:0006366;transcription from RNA polymerase II promoter;1.85643858946831e-06!GO:0043066;negative regulation of apoptosis;1.99449143869599e-06!GO:0032446;protein modification by small protein conjugation;2.03697863748693e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.04072910255215e-06!GO:0016607;nuclear speck;2.70869795638508e-06!GO:0065004;protein-DNA complex assembly;2.80106919664918e-06!GO:0004386;helicase activity;2.81436198132169e-06!GO:0003676;nucleic acid binding;2.84977816488408e-06!GO:0000139;Golgi membrane;3.01588333557103e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.20995930626069e-06!GO:0005643;nuclear pore;3.41769440147001e-06!GO:0016567;protein ubiquitination;3.513154282152e-06!GO:0004298;threonine endopeptidase activity;4.18379068007816e-06!GO:0000087;M phase of mitotic cell cycle;4.36671385512896e-06!GO:0008654;phospholipid biosynthetic process;4.611616066673e-06!GO:0022403;cell cycle phase;4.73422553370625e-06!GO:0045786;negative regulation of progression through cell cycle;5.59117421560379e-06!GO:0006084;acetyl-CoA metabolic process;6.01574354907684e-06!GO:0007067;mitosis;6.03150410722992e-06!GO:0045259;proton-transporting ATP synthase complex;6.07085820233608e-06!GO:0003714;transcription corepressor activity;6.37713894420435e-06!GO:0005770;late endosome;7.48119713247346e-06!GO:0005694;chromosome;7.55486727011106e-06!GO:0005762;mitochondrial large ribosomal subunit;7.72799398893716e-06!GO:0000315;organellar large ribosomal subunit;7.72799398893716e-06!GO:0051301;cell division;8.69493683365155e-06!GO:0045454;cell redox homeostasis;9.49541126750858e-06!GO:0008361;regulation of cell size;1.00042480114384e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.03914010812685e-05!GO:0005667;transcription factor complex;1.04965631888094e-05!GO:0030133;transport vesicle;1.04965631888094e-05!GO:0051789;response to protein stimulus;1.11040194379577e-05!GO:0006986;response to unfolded protein;1.11040194379577e-05!GO:0031968;organelle outer membrane;1.14868214430562e-05!GO:0046930;pore complex;1.24024743518377e-05!GO:0019867;outer membrane;1.3944881260127e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.40699901807012e-05!GO:0016070;RNA metabolic process;1.50170021742111e-05!GO:0016049;cell growth;1.5309446863812e-05!GO:0007010;cytoskeleton organization and biogenesis;1.62596784781452e-05!GO:0044427;chromosomal part;1.6487561191241e-05!GO:0006793;phosphorus metabolic process;1.81312776554177e-05!GO:0006796;phosphate metabolic process;1.81312776554177e-05!GO:0006333;chromatin assembly or disassembly;2.008463807121e-05!GO:0006613;cotranslational protein targeting to membrane;2.0878617020567e-05!GO:0006260;DNA replication;2.12166231688282e-05!GO:0000151;ubiquitin ligase complex;2.19854210840085e-05!GO:0016310;phosphorylation;2.39242490681871e-05!GO:0000785;chromatin;2.42642802016143e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.51147755434533e-05!GO:0015399;primary active transmembrane transporter activity;2.51147755434533e-05!GO:0043623;cellular protein complex assembly;2.53706633480925e-05!GO:0003697;single-stranded DNA binding;2.95313138432097e-05!GO:0030867;rough endoplasmic reticulum membrane;2.95415515155493e-05!GO:0005905;coated pit;2.97973913117809e-05!GO:0044440;endosomal part;2.9900666677982e-05!GO:0010008;endosome membrane;2.9900666677982e-05!GO:0016853;isomerase activity;3.2389542016391e-05!GO:0006364;rRNA processing;3.27591657897807e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.35702186786688e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.4490931320825e-05!GO:0050657;nucleic acid transport;3.93868894932885e-05!GO:0051236;establishment of RNA localization;3.93868894932885e-05!GO:0050658;RNA transport;3.93868894932885e-05!GO:0016740;transferase activity;4.0387880218417e-05!GO:0005791;rough endoplasmic reticulum;4.06227967499294e-05!GO:0006403;RNA localization;4.40338665235849e-05!GO:0051170;nuclear import;4.52736864556265e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.94608439174281e-05!GO:0016072;rRNA metabolic process;5.80955189064405e-05!GO:0000245;spliceosome assembly;6.76470967288337e-05!GO:0015630;microtubule cytoskeleton;6.92538401876817e-05!GO:0001558;regulation of cell growth;6.93727760948214e-05!GO:0016564;transcription repressor activity;7.02102317879429e-05!GO:0005741;mitochondrial outer membrane;7.16813260558724e-05!GO:0006606;protein import into nucleus;7.39933467085973e-05!GO:0005525;GTP binding;7.9759927037243e-05!GO:0003713;transcription coactivator activity;8.91177689551382e-05!GO:0009165;nucleotide biosynthetic process;9.7869173910136e-05!GO:0005048;signal sequence binding;0.000107012148166008!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000119329035837798!GO:0043566;structure-specific DNA binding;0.00015055797702805!GO:0006334;nucleosome assembly;0.000156940137358439!GO:0006839;mitochondrial transport;0.000161708906078465!GO:0030029;actin filament-based process;0.000164511592133485!GO:0046474;glycerophospholipid biosynthetic process;0.000172859577125743!GO:0016568;chromatin modification;0.000177280691468985!GO:0003724;RNA helicase activity;0.000182702571870516!GO:0022890;inorganic cation transmembrane transporter activity;0.000202455446641236!GO:0019899;enzyme binding;0.000254003034786792!GO:0043021;ribonucleoprotein binding;0.000259176164827798!GO:0008250;oligosaccharyl transferase complex;0.000269617700350364!GO:0031497;chromatin assembly;0.000276486695600709!GO:0051329;interphase of mitotic cell cycle;0.000305396689378134!GO:0004576;oligosaccharyl transferase activity;0.00030915831337204!GO:0015992;proton transport;0.000319820349189954!GO:0030663;COPI coated vesicle membrane;0.000326725761026875!GO:0030126;COPI vesicle coat;0.000326725761026875!GO:0033116;ER-Golgi intermediate compartment membrane;0.000340066134744047!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000342871163647955!GO:0016126;sterol biosynthetic process;0.000355711751463729!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000367633521663502!GO:0030659;cytoplasmic vesicle membrane;0.000374542255210837!GO:0043492;ATPase activity, coupled to movement of substances;0.00037696783417552!GO:0006818;hydrogen transport;0.000380231426602797!GO:0005769;early endosome;0.000380956039235533!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000386391062250774!GO:0000314;organellar small ribosomal subunit;0.000388724231493956!GO:0005763;mitochondrial small ribosomal subunit;0.000388724231493956!GO:0016563;transcription activator activity;0.00039379482838343!GO:0005885;Arp2/3 protein complex;0.000417277408151862!GO:0031324;negative regulation of cellular metabolic process;0.000423170512890274!GO:0044262;cellular carbohydrate metabolic process;0.000437056443961288!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000438076285950814!GO:0043284;biopolymer biosynthetic process;0.000438076285950814!GO:0030658;transport vesicle membrane;0.000439065119181432!GO:0006626;protein targeting to mitochondrion;0.000439977422686815!GO:0032561;guanyl ribonucleotide binding;0.000451151826632303!GO:0019001;guanyl nucleotide binding;0.000451151826632303!GO:0006612;protein targeting to membrane;0.000457164953250859!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000462260965106368!GO:0016859;cis-trans isomerase activity;0.000464142681197754!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000464300870078129!GO:0051325;interphase;0.000548123687414162!GO:0048522;positive regulation of cellular process;0.000565832816146721!GO:0051028;mRNA transport;0.000646387676951838!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000649627605904512!GO:0030137;COPI-coated vesicle;0.000676241292680645!GO:0016044;membrane organization and biogenesis;0.000729938955479565!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000777966648142704!GO:0018196;peptidyl-asparagine modification;0.000777966648142704!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000777966648142704!GO:0016779;nucleotidyltransferase activity;0.000825512847064858!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000887364533485793!GO:0000279;M phase;0.000896237990234756!GO:0050794;regulation of cellular process;0.000908475083972585!GO:0051920;peroxiredoxin activity;0.000989921154584002!GO:0044433;cytoplasmic vesicle part;0.00103323592588254!GO:0008610;lipid biosynthetic process;0.00103989844273457!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00105926511917474!GO:0015002;heme-copper terminal oxidase activity;0.00105926511917474!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00105926511917474!GO:0004129;cytochrome-c oxidase activity;0.00105926511917474!GO:0001726;ruffle;0.00112617197957598!GO:0008092;cytoskeletal protein binding;0.00112617197957598!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00119931720763573!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00119931720763573!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00119931720763573!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00121554848173404!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00124099484263403!GO:0030132;clathrin coat of coated pit;0.00125708431966812!GO:0042802;identical protein binding;0.00127756653793694!GO:0006650;glycerophospholipid metabolic process;0.00132543471089051!GO:0030660;Golgi-associated vesicle membrane;0.00134589852210792!GO:0065009;regulation of a molecular function;0.00136013009721908!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00141210097391446!GO:0046467;membrane lipid biosynthetic process;0.0014353554049554!GO:0043681;protein import into mitochondrion;0.00145437445139903!GO:0051252;regulation of RNA metabolic process;0.00145934227228232!GO:0051168;nuclear export;0.00145934227228232!GO:0048471;perinuclear region of cytoplasm;0.00147041238094496!GO:0046489;phosphoinositide biosynthetic process;0.00147041238094496!GO:0005813;centrosome;0.00147041238094496!GO:0006414;translational elongation;0.00152386683973418!GO:0007050;cell cycle arrest;0.00154796924544837!GO:0030027;lamellipodium;0.00167116628190365!GO:0019843;rRNA binding;0.00172370297220405!GO:0006082;organic acid metabolic process;0.00174724219375428!GO:0006979;response to oxidative stress;0.00174724219375428!GO:0048468;cell development;0.00175437797530475!GO:0012506;vesicle membrane;0.00185996357511289!GO:0007243;protein kinase cascade;0.00188532737978272!GO:0019752;carboxylic acid metabolic process;0.00194183943689658!GO:0051427;hormone receptor binding;0.0020017965255797!GO:0003729;mRNA binding;0.00203568835156446!GO:0000082;G1/S transition of mitotic cell cycle;0.00206041532879593!GO:0007006;mitochondrial membrane organization and biogenesis;0.00209161806179742!GO:0030176;integral to endoplasmic reticulum membrane;0.00209919559028754!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00218497680366051!GO:0030118;clathrin coat;0.00237706875880599!GO:0046483;heterocycle metabolic process;0.00244572314501578!GO:0003899;DNA-directed RNA polymerase activity;0.00244855310900674!GO:0009892;negative regulation of metabolic process;0.00255346847673326!GO:0040008;regulation of growth;0.00257889608258731!GO:0006695;cholesterol biosynthetic process;0.00258108405037583!GO:0005819;spindle;0.00258446147821248!GO:0008186;RNA-dependent ATPase activity;0.00263942864140138!GO:0005815;microtubule organizing center;0.00272998758407375!GO:0006891;intra-Golgi vesicle-mediated transport;0.00302594668800717!GO:0043488;regulation of mRNA stability;0.00321839792971745!GO:0043487;regulation of RNA stability;0.00321839792971745!GO:0048487;beta-tubulin binding;0.00326271965341335!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00332635856145441!GO:0030125;clathrin vesicle coat;0.00350871997037711!GO:0030665;clathrin coated vesicle membrane;0.00350871997037711!GO:0000059;protein import into nucleus, docking;0.00354912061615379!GO:0035257;nuclear hormone receptor binding;0.00358889726086227!GO:0048500;signal recognition particle;0.00376332029203308!GO:0004177;aminopeptidase activity;0.00401452768476827!GO:0005774;vacuolar membrane;0.00413884981663079!GO:0008632;apoptotic program;0.00420148403319871!GO:0006118;electron transport;0.00422421655775073!GO:0051287;NAD binding;0.00446465479626878!GO:0006778;porphyrin metabolic process;0.00468170700376269!GO:0033013;tetrapyrrole metabolic process;0.00468170700376269!GO:0045045;secretory pathway;0.00472135344394039!GO:0006595;polyamine metabolic process;0.00494381853126295!GO:0017166;vinculin binding;0.00497098501936673!GO:0046519;sphingoid metabolic process;0.00499944858133706!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00500197516977357!GO:0007040;lysosome organization and biogenesis;0.00503290387317184!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00504747947167992!GO:0030134;ER to Golgi transport vesicle;0.00507422630504538!GO:0045792;negative regulation of cell size;0.005221242027454!GO:0005637;nuclear inner membrane;0.00548456321466759!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00551323573580822!GO:0030127;COPII vesicle coat;0.00597900083887138!GO:0012507;ER to Golgi transport vesicle membrane;0.00597900083887138!GO:0004004;ATP-dependent RNA helicase activity;0.00669760224675482!GO:0030308;negative regulation of cell growth;0.00680660580709517!GO:0006509;membrane protein ectodomain proteolysis;0.0068966906008528!GO:0033619;membrane protein proteolysis;0.0068966906008528!GO:0006497;protein amino acid lipidation;0.00730003148485912!GO:0006740;NADPH regeneration;0.00737430613763077!GO:0006098;pentose-phosphate shunt;0.00737430613763077!GO:0006520;amino acid metabolic process;0.00806053324280095!GO:0006672;ceramide metabolic process;0.00807802019591842!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00819466024690442!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00819466024690442!GO:0007033;vacuole organization and biogenesis;0.00820204617092101!GO:0031124;mRNA 3'-end processing;0.00820204617092101!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00834704893599313!GO:0045047;protein targeting to ER;0.00834704893599313!GO:0051128;regulation of cellular component organization and biogenesis;0.00851446455700758!GO:0007264;small GTPase mediated signal transduction;0.00865500098245803!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00881496833828108!GO:0008139;nuclear localization sequence binding;0.00881496833828108!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00901049426280802!GO:0031072;heat shock protein binding;0.00905805538070529!GO:0044437;vacuolar part;0.00908284769399869!GO:0006402;mRNA catabolic process;0.00914507394471897!GO:0050789;regulation of biological process;0.00944725019725025!GO:0005869;dynactin complex;0.00982908817640004!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00982908817640004!GO:0005684;U2-dependent spliceosome;0.00982908817640004!GO:0006779;porphyrin biosynthetic process;0.00982908817640004!GO:0033014;tetrapyrrole biosynthetic process;0.00982908817640004!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0103474194624546!GO:0042158;lipoprotein biosynthetic process;0.0105390958067172!GO:0003746;translation elongation factor activity;0.0110007688065614!GO:0042168;heme metabolic process;0.011278426923595!GO:0048518;positive regulation of biological process;0.0113541352484213!GO:0033673;negative regulation of kinase activity;0.0114177299365437!GO:0006469;negative regulation of protein kinase activity;0.0114177299365437!GO:0003684;damaged DNA binding;0.0114605628198795!GO:0009967;positive regulation of signal transduction;0.0114605628198795!GO:0016272;prefoldin complex;0.0114605628198795!GO:0030384;phosphoinositide metabolic process;0.0118808981805278!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0119259178069126!GO:0045936;negative regulation of phosphate metabolic process;0.0122824515004896!GO:0051087;chaperone binding;0.0129064044482924!GO:0008180;signalosome;0.0129169794644128!GO:0006892;post-Golgi vesicle-mediated transport;0.0129804627436216!GO:0031902;late endosome membrane;0.0132573098899921!GO:0000049;tRNA binding;0.0132598140304362!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0132598140304362!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0134553900824474!GO:0051348;negative regulation of transferase activity;0.013455597721139!GO:0008286;insulin receptor signaling pathway;0.0139501253095429!GO:0008022;protein C-terminus binding;0.0141346659256811!GO:0005862;muscle thin filament tropomyosin;0.0141346659256811!GO:0050662;coenzyme binding;0.0146476272002422!GO:0000075;cell cycle checkpoint;0.0147496497329438!GO:0016363;nuclear matrix;0.0147541441320083!GO:0050811;GABA receptor binding;0.0148904821467186!GO:0005765;lysosomal membrane;0.015055296760633!GO:0016125;sterol metabolic process;0.01530532717751!GO:0006383;transcription from RNA polymerase III promoter;0.0155447328101149!GO:0015631;tubulin binding;0.0157150468579825!GO:0051540;metal cluster binding;0.0157351590239356!GO:0051536;iron-sulfur cluster binding;0.0157351590239356!GO:0030119;AP-type membrane coat adaptor complex;0.0157351590239356!GO:0006984;ER-nuclear signaling pathway;0.0160626761744682!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.016255659243058!GO:0006289;nucleotide-excision repair;0.0164326538713805!GO:0008320;protein transmembrane transporter activity;0.0166883309999963!GO:0000096;sulfur amino acid metabolic process;0.0167465529947406!GO:0008047;enzyme activator activity;0.017719314931116!GO:0031543;peptidyl-proline dioxygenase activity;0.0178489587185317!GO:0008312;7S RNA binding;0.0183624615004373!GO:0006506;GPI anchor biosynthetic process;0.0190841546245441!GO:0003711;transcription elongation regulator activity;0.0194644271315278!GO:0016481;negative regulation of transcription;0.0194644271315278!GO:0033559;unsaturated fatty acid metabolic process;0.0194644271315278!GO:0006636;unsaturated fatty acid biosynthetic process;0.0194644271315278!GO:0006739;NADP metabolic process;0.0194876200070832!GO:0019206;nucleoside kinase activity;0.0194876200070832!GO:0043433;negative regulation of transcription factor activity;0.0204349836479369!GO:0006767;water-soluble vitamin metabolic process;0.0204480701359344!GO:0006611;protein export from nucleus;0.0210232169084603!GO:0045926;negative regulation of growth;0.0213791212565149!GO:0003690;double-stranded DNA binding;0.0216632007760112!GO:0031529;ruffle organization and biogenesis;0.0217035108532428!GO:0043022;ribosome binding;0.0218046802339739!GO:0030041;actin filament polymerization;0.0218598402183014!GO:0006352;transcription initiation;0.0218706803060427!GO:0046426;negative regulation of JAK-STAT cascade;0.021966783236004!GO:0008033;tRNA processing;0.022147661618957!GO:0030508;thiol-disulfide exchange intermediate activity;0.0224010398535332!GO:0007051;spindle organization and biogenesis;0.022472146513943!GO:0008154;actin polymerization and/or depolymerization;0.0229101986698628!GO:0006505;GPI anchor metabolic process;0.0231508736250472!GO:0006783;heme biosynthetic process;0.0231911989859605!GO:0035258;steroid hormone receptor binding;0.0232074782420945!GO:0006261;DNA-dependent DNA replication;0.0233142806700719!GO:0050790;regulation of catalytic activity;0.0233142806700719!GO:0006643;membrane lipid metabolic process;0.0238540787219898!GO:0005832;chaperonin-containing T-complex;0.0238591592307472!GO:0030131;clathrin adaptor complex;0.024285834459498!GO:0030503;regulation of cell redox homeostasis;0.0253631549048837!GO:0031418;L-ascorbic acid binding;0.0253631549048837!GO:0019798;procollagen-proline dioxygenase activity;0.0255584043817329!GO:0016197;endosome transport;0.0257931045045027!GO:0008637;apoptotic mitochondrial changes;0.0270689107360492!GO:0016646;oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor;0.0272586200204496!GO:0007021;tubulin folding;0.0276177721421703!GO:0006897;endocytosis;0.0276177721421703!GO:0010324;membrane invagination;0.0276177721421703!GO:0006950;response to stress;0.0276177721421703!GO:0006401;RNA catabolic process;0.0281690676836164!GO:0007034;vacuolar transport;0.0284475470231871!GO:0031625;ubiquitin protein ligase binding;0.0284832902073345!GO:0048037;cofactor binding;0.0285735380507141!GO:0033239;negative regulation of amine metabolic process;0.0286000205253648!GO:0045763;negative regulation of amino acid metabolic process;0.0286000205253648!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0286000205253648!GO:0007160;cell-matrix adhesion;0.0286000205253648!GO:0031589;cell-substrate adhesion;0.0286877670755508!GO:0008147;structural constituent of bone;0.028823398932786!GO:0003678;DNA helicase activity;0.029465105127579!GO:0000209;protein polyubiquitination;0.0294848318240643!GO:0006007;glucose catabolic process;0.0300508320113736!GO:0006733;oxidoreduction coenzyme metabolic process;0.0301245826274217!GO:0051539;4 iron, 4 sulfur cluster binding;0.03019695891722!GO:0030880;RNA polymerase complex;0.03019695891722!GO:0007569;cell aging;0.0302932701231465!GO:0042326;negative regulation of phosphorylation;0.0302932701231465!GO:0000339;RNA cap binding;0.0311750349241208!GO:0031901;early endosome membrane;0.0313985058071758!GO:0005874;microtubule;0.0314091523919104!GO:0006807;nitrogen compound metabolic process;0.0322992100330726!GO:0016251;general RNA polymerase II transcription factor activity;0.0323037399161409!GO:0000786;nucleosome;0.0323378254885263!GO:0035035;histone acetyltransferase binding;0.0324071471323825!GO:0030140;trans-Golgi network transport vesicle;0.0324540225938445!GO:0006354;RNA elongation;0.0326738421781569!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0327004946928734!GO:0005669;transcription factor TFIID complex;0.0331583408439735!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0335274190580385!GO:0010257;NADH dehydrogenase complex assembly;0.0335274190580385!GO:0033108;mitochondrial respiratory chain complex assembly;0.0335274190580385!GO:0022408;negative regulation of cell-cell adhesion;0.0335274190580385!GO:0008168;methyltransferase activity;0.0342870245422996!GO:0005096;GTPase activator activity;0.0348471808143523!GO:0016860;intramolecular oxidoreductase activity;0.0350627258708681!GO:0047485;protein N-terminus binding;0.0357437896224554!GO:0008243;plasminogen activator activity;0.0357437896224554!GO:0031123;RNA 3'-end processing;0.0364403534679053!GO:0030521;androgen receptor signaling pathway;0.0366208194142516!GO:0016741;transferase activity, transferring one-carbon groups;0.0368065321834006!GO:0006720;isoprenoid metabolic process;0.0381044690469242!GO:0030833;regulation of actin filament polymerization;0.0384605128906281!GO:0003756;protein disulfide isomerase activity;0.0386139424536296!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0386139424536296!GO:0003779;actin binding;0.0389387179103362!GO:0006518;peptide metabolic process;0.0390452142238621!GO:0000287;magnesium ion binding;0.0392850754186079!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0392850754186079!GO:0033043;regulation of organelle organization and biogenesis;0.0392850754186079!GO:0006790;sulfur metabolic process;0.0407517221824356!GO:0009308;amine metabolic process;0.0411473877325121!GO:0008652;amino acid biosynthetic process;0.0414067100266805!GO:0006769;nicotinamide metabolic process;0.0415356264637482!GO:0008242;omega peptidase activity;0.0416670590859014!GO:0032940;secretion by cell;0.0421433742467556!GO:0004448;isocitrate dehydrogenase activity;0.0422949132563846!GO:0005581;collagen;0.042619801779969!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0427218490982416!GO:0000118;histone deacetylase complex;0.0434027805497335!GO:0016408;C-acyltransferase activity;0.0434027805497335!GO:0003923;GPI-anchor transamidase activity;0.0434027805497335!GO:0016255;attachment of GPI anchor to protein;0.0434027805497335!GO:0042765;GPI-anchor transamidase complex;0.0434027805497335!GO:0008601;protein phosphatase type 2A regulator activity;0.0434027805497335!GO:0045334;clathrin-coated endocytic vesicle;0.0435500330921195!GO:0008538;proteasome activator activity;0.0435955404026516!GO:0022884;macromolecule transmembrane transporter activity;0.0437312813993362!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0437312813993362!GO:0051881;regulation of mitochondrial membrane potential;0.0439237400525584!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0440294430427258!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0440294430427258!GO:0046813;virion attachment, binding of host cell surface receptor;0.0440294430427258!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0440294430427258!GO:0045941;positive regulation of transcription;0.0440764301825027!GO:0030911;TPR domain binding;0.0451299204873258!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0461706170176724!GO:0030145;manganese ion binding;0.0465818623781215!GO:0031301;integral to organelle membrane;0.0470262438348337!GO:0006302;double-strand break repair;0.0471637689089928!GO:0005784;translocon complex;0.0471817595885987!GO:0050178;phenylpyruvate tautomerase activity;0.0479268721018728!GO:0004722;protein serine/threonine phosphatase activity;0.0487686485044048!GO:0044452;nucleolar part;0.0491259856160447!GO:0030032;lamellipodium biogenesis;0.0491364199144336!GO:0009116;nucleoside metabolic process;0.0493482042535169!GO:0006378;mRNA polyadenylation;0.0495103308493452!GO:0018193;peptidyl-amino acid modification;0.0495103308493452 | |||
|sample_id=11627 | |sample_id=11627 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=amnion | |sample_tissue=amnion | ||
|top_motifs=ESR1:1.71608865123;SRF:1.69210240129;TAL1_TCF{3,4,12}:1.46002614422;RXR{A,B,G}:1.40684309317;RXRA_VDR{dimer}:1.31588972362;GZF1:1.27372560919;NR6A1:1.23541947103;HES1:1.22548465282;TP53:1.12210083026;SMAD1..7,9:1.10337211676;TFAP4:1.07728303577;UFEwm:1.03682432102;TEAD1:1.0263232184;NR3C1:1.00362795217;GLI1..3:0.995368755891;MAFB:0.916279906687;ALX4:0.884761547846;TLX1..3_NFIC{dimer}:0.866083501057;HSF1,2:0.813871384468;ZNF238:0.785694870502;TFCP2:0.771745276688;ZBTB6:0.759830695262;NKX2-2,8:0.756559560979;TBX4,5:0.753008783586;SREBF1,2:0.74174250313;HAND1,2:0.730102644038;CDC5L:0.726164138526;LHX3,4:0.717929348621;KLF4:0.702624614653;LEF1_TCF7_TCF7L1,2:0.7024819506;HMX1:0.700605837339;ARID5B:0.682920254292;HMGA1,2:0.680279290194;TEF:0.647710211422;PAX1,9:0.639572870524;NFE2L1:0.632221314885;TFAP2{A,C}:0.622698469167;GTF2I:0.619603538892;SPZ1:0.585537822578;PAX6:0.576516845226;PRDM1:0.565978380761;ADNP_IRX_SIX_ZHX:0.565558882376;PAX3,7:0.553236973321;CRX:0.544447226376;DBP:0.533610481102;EBF1:0.518921908149;TBP:0.502984082024;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.488567053697;GFI1B:0.487359875094;GCM1,2:0.48508265265;SOX17:0.457044597029;POU3F1..4:0.447023636405;PAX4:0.446485101981;GTF2A1,2:0.443340908729;RREB1:0.422591957379;PPARG:0.398515735432;POU5F1:0.394840708275;HOX{A5,B5}:0.378711377183;NKX2-3_NKX2-5:0.3652117916;GATA4:0.357405383753;NKX3-1:0.355052617543;XBP1:0.348724604901;NFATC1..3:0.34598483375;ZIC1..3:0.341977671236;EN1,2:0.336813451856;TFAP2B:0.310952689662;HIF1A:0.291839545114;ZNF384:0.289754591651;HIC1:0.286753491923;MZF1:0.278137435934;NFE2L2:0.229942061883;NR1H4:0.222446641621;HLF:0.197418795849;PATZ1:0.195375771214;NHLH1,2:0.183378624106;bHLH_family:0.174516778413;MYFfamily:0.169181910382;ZNF423:0.16625562042;ESRRA:0.164676501903;HOX{A4,D4}:0.131728853956;REST:0.114104601934;HNF4A_NR2F1,2:0.103573189914;MTE{core}:0.0933686206045;ATF6:0.087765403567;PAX5:0.0848435474281;ONECUT1,2:0.0752848157238;TOPORS:0.0711074864278;BACH2:0.0569456316995;FOXD3:0.0544460583992;ZNF148:0.0392267317709;SOX5:0.0279686143259;IKZF1:0.0249480533169;HNF1A:0.0182952658611;MYBL2:0.0169224927387;MEF2{A,B,C,D}:-0.00347291625633;FOXM1:-0.0260513590031;NFE2:-0.0262575047901;XCPE1{core}:-0.0401463398827;HOX{A6,A7,B6,B7}:-0.0523475439878;POU1F1:-0.0736206568004;FOXL1:-0.075029243439;FOS_FOS{B,L1}_JUN{B,D}:-0.0824235487972;MED-1{core}:-0.0955042168936;NANOG{mouse}:-0.0978090474212;ATF2:-0.113852547408;YY1:-0.11458540354;NKX3-2:-0.114640112231;EGR1..3:-0.122088899934;PAX8:-0.122174387949;ZFP161:-0.133730180982;FOX{I1,J2}:-0.144200600345;MYB:-0.144878600636;HOXA9_MEIS1:-0.148269416204;MAZ:-0.165401759356;DMAP1_NCOR{1,2}_SMARC:-0.167154212549;TFDP1:-0.191444815716;MTF1:-0.206765525858;SOX2:-0.20829707408;SP1:-0.217780997816;NR5A1,2:-0.229977251071;ALX1:-0.26472939462;IRF1,2:-0.279077093045;AHR_ARNT_ARNT2:-0.280088628616;FOSL2:-0.291206829347;PAX2:-0.297286352031;CEBPA,B_DDIT3:-0.318502982578;NFKB1_REL_RELA:-0.32227461355;EVI1:-0.346964013323;NKX6-1,2:-0.347232646624;RFX1:-0.374441384044;ATF5_CREB3:-0.39964665532;NRF1:-0.40136354551;GFI1:-0.403917525893;PRRX1,2:-0.405431465731;SPIB:-0.406216976969;IRF7:-0.407948335664;NFIX:-0.41730120241;LMO2:-0.422212381398;ETS1,2:-0.424148214128;FOXP3:-0.443316174255;FOXQ1:-0.447735644885;FOX{D1,D2}:-0.469324729414;RBPJ:-0.49019219519;AIRE:-0.52446228987;SPI1:-0.531610627296;SNAI1..3:-0.537900849503;AR:-0.54887754839;POU6F1:-0.558317442948;RUNX1..3:-0.563783629498;TGIF1:-0.564322225189;MYOD1:-0.579069086379;ZNF143:-0.592002999348;CDX1,2,4:-0.592324750071;CREB1:-0.60107978121;FOXA2:-0.601449580355;ZBTB16:-0.605871166445;STAT2,4,6:-0.618438628407;E2F1..5:-0.625187404423;FOXN1:-0.683017320302;PBX1:-0.693364223373;ELF1,2,4:-0.70650302706;ZEB1:-0.707513941453;ELK1,4_GABP{A,B1}:-0.71022885104;GATA6:-0.719889904728;POU2F1..3:-0.741136793543;NFY{A,B,C}:-0.741205407747;CUX2:-0.747725904943;FOXP1:-0.748379835019;HBP1_HMGB_SSRP1_UBTF:-0.805045513385;OCT4_SOX2{dimer}:-0.823642346712;STAT5{A,B}:-0.830791262385;IKZF2:-0.845635439636;PDX1:-0.85957653658;JUN:-0.872396883483;RFX2..5_RFXANK_RFXAP:-0.897905221451;FOXO1,3,4:-0.907270605241;RORA:-0.917477234381;SOX{8,9,10}:-0.920175580132;NFIL3:-0.981166078496;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.00685628561;FOX{F1,F2,J1}:-1.03444493167;BPTF:-1.0495971083;BREu{core}:-1.07429208974;T:-1.08297872565;NKX2-1,4:-1.14622376358;NANOG:-1.15920740757;PITX1..3:-1.19059533377;STAT1,3:-1.22441951569;VSX1,2:-1.50085710179;EP300:-1.52014741593;ATF4:-1.54289970656;TLX2:-1.92514377867 | |top_motifs=ESR1:1.71608865123;SRF:1.69210240129;TAL1_TCF{3,4,12}:1.46002614422;RXR{A,B,G}:1.40684309317;RXRA_VDR{dimer}:1.31588972362;GZF1:1.27372560919;NR6A1:1.23541947103;HES1:1.22548465282;TP53:1.12210083026;SMAD1..7,9:1.10337211676;TFAP4:1.07728303577;UFEwm:1.03682432102;TEAD1:1.0263232184;NR3C1:1.00362795217;GLI1..3:0.995368755891;MAFB:0.916279906687;ALX4:0.884761547846;TLX1..3_NFIC{dimer}:0.866083501057;HSF1,2:0.813871384468;ZNF238:0.785694870502;TFCP2:0.771745276688;ZBTB6:0.759830695262;NKX2-2,8:0.756559560979;TBX4,5:0.753008783586;SREBF1,2:0.74174250313;HAND1,2:0.730102644038;CDC5L:0.726164138526;LHX3,4:0.717929348621;KLF4:0.702624614653;LEF1_TCF7_TCF7L1,2:0.7024819506;HMX1:0.700605837339;ARID5B:0.682920254292;HMGA1,2:0.680279290194;TEF:0.647710211422;PAX1,9:0.639572870524;NFE2L1:0.632221314885;TFAP2{A,C}:0.622698469167;GTF2I:0.619603538892;SPZ1:0.585537822578;PAX6:0.576516845226;PRDM1:0.565978380761;ADNP_IRX_SIX_ZHX:0.565558882376;PAX3,7:0.553236973321;CRX:0.544447226376;DBP:0.533610481102;EBF1:0.518921908149;TBP:0.502984082024;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.488567053697;GFI1B:0.487359875094;GCM1,2:0.48508265265;SOX17:0.457044597029;POU3F1..4:0.447023636405;PAX4:0.446485101981;GTF2A1,2:0.443340908729;RREB1:0.422591957379;PPARG:0.398515735432;POU5F1:0.394840708275;HOX{A5,B5}:0.378711377183;NKX2-3_NKX2-5:0.3652117916;GATA4:0.357405383753;NKX3-1:0.355052617543;XBP1:0.348724604901;NFATC1..3:0.34598483375;ZIC1..3:0.341977671236;EN1,2:0.336813451856;TFAP2B:0.310952689662;HIF1A:0.291839545114;ZNF384:0.289754591651;HIC1:0.286753491923;MZF1:0.278137435934;NFE2L2:0.229942061883;NR1H4:0.222446641621;HLF:0.197418795849;PATZ1:0.195375771214;NHLH1,2:0.183378624106;bHLH_family:0.174516778413;MYFfamily:0.169181910382;ZNF423:0.16625562042;ESRRA:0.164676501903;HOX{A4,D4}:0.131728853956;REST:0.114104601934;HNF4A_NR2F1,2:0.103573189914;MTE{core}:0.0933686206045;ATF6:0.087765403567;PAX5:0.0848435474281;ONECUT1,2:0.0752848157238;TOPORS:0.0711074864278;BACH2:0.0569456316995;FOXD3:0.0544460583992;ZNF148:0.0392267317709;SOX5:0.0279686143259;IKZF1:0.0249480533169;HNF1A:0.0182952658611;MYBL2:0.0169224927387;MEF2{A,B,C,D}:-0.00347291625633;FOXM1:-0.0260513590031;NFE2:-0.0262575047901;XCPE1{core}:-0.0401463398827;HOX{A6,A7,B6,B7}:-0.0523475439878;POU1F1:-0.0736206568004;FOXL1:-0.075029243439;FOS_FOS{B,L1}_JUN{B,D}:-0.0824235487972;MED-1{core}:-0.0955042168936;NANOG{mouse}:-0.0978090474212;ATF2:-0.113852547408;YY1:-0.11458540354;NKX3-2:-0.114640112231;EGR1..3:-0.122088899934;PAX8:-0.122174387949;ZFP161:-0.133730180982;FOX{I1,J2}:-0.144200600345;MYB:-0.144878600636;HOXA9_MEIS1:-0.148269416204;MAZ:-0.165401759356;DMAP1_NCOR{1,2}_SMARC:-0.167154212549;TFDP1:-0.191444815716;MTF1:-0.206765525858;SOX2:-0.20829707408;SP1:-0.217780997816;NR5A1,2:-0.229977251071;ALX1:-0.26472939462;IRF1,2:-0.279077093045;AHR_ARNT_ARNT2:-0.280088628616;FOSL2:-0.291206829347;PAX2:-0.297286352031;CEBPA,B_DDIT3:-0.318502982578;NFKB1_REL_RELA:-0.32227461355;EVI1:-0.346964013323;NKX6-1,2:-0.347232646624;RFX1:-0.374441384044;ATF5_CREB3:-0.39964665532;NRF1:-0.40136354551;GFI1:-0.403917525893;PRRX1,2:-0.405431465731;SPIB:-0.406216976969;IRF7:-0.407948335664;NFIX:-0.41730120241;LMO2:-0.422212381398;ETS1,2:-0.424148214128;FOXP3:-0.443316174255;FOXQ1:-0.447735644885;FOX{D1,D2}:-0.469324729414;RBPJ:-0.49019219519;AIRE:-0.52446228987;SPI1:-0.531610627296;SNAI1..3:-0.537900849503;AR:-0.54887754839;POU6F1:-0.558317442948;RUNX1..3:-0.563783629498;TGIF1:-0.564322225189;MYOD1:-0.579069086379;ZNF143:-0.592002999348;CDX1,2,4:-0.592324750071;CREB1:-0.60107978121;FOXA2:-0.601449580355;ZBTB16:-0.605871166445;STAT2,4,6:-0.618438628407;E2F1..5:-0.625187404423;FOXN1:-0.683017320302;PBX1:-0.693364223373;ELF1,2,4:-0.70650302706;ZEB1:-0.707513941453;ELK1,4_GABP{A,B1}:-0.71022885104;GATA6:-0.719889904728;POU2F1..3:-0.741136793543;NFY{A,B,C}:-0.741205407747;CUX2:-0.747725904943;FOXP1:-0.748379835019;HBP1_HMGB_SSRP1_UBTF:-0.805045513385;OCT4_SOX2{dimer}:-0.823642346712;STAT5{A,B}:-0.830791262385;IKZF2:-0.845635439636;PDX1:-0.85957653658;JUN:-0.872396883483;RFX2..5_RFXANK_RFXAP:-0.897905221451;FOXO1,3,4:-0.907270605241;RORA:-0.917477234381;SOX{8,9,10}:-0.920175580132;NFIL3:-0.981166078496;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.00685628561;FOX{F1,F2,J1}:-1.03444493167;BPTF:-1.0495971083;BREu{core}:-1.07429208974;T:-1.08297872565;NKX2-1,4:-1.14622376358;NANOG:-1.15920740757;PITX1..3:-1.19059533377;STAT1,3:-1.22441951569;VSX1,2:-1.50085710179;EP300:-1.52014741593;ATF4:-1.54289970656;TLX2:-1.92514377867 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11627-122B7;search_select_hide=table117:FF:11627-122B7 | |||
}} | }} | ||
Latest revision as of 18:12, 4 June 2020
| Name: | Mesenchymal Stem Cells - amniotic membrane, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12104 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12104
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12104
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.941 |
| 10 | 10 | 0.8 |
| 100 | 100 | 0.76 |
| 101 | 101 | 0.797 |
| 102 | 102 | 0.164 |
| 103 | 103 | 0.507 |
| 104 | 104 | 0.367 |
| 105 | 105 | 0.633 |
| 106 | 106 | 0.0291 |
| 107 | 107 | 0.0592 |
| 108 | 108 | 0.235 |
| 109 | 109 | 0.328 |
| 11 | 11 | 0.28 |
| 110 | 110 | 0.296 |
| 111 | 111 | 0.697 |
| 112 | 112 | 0.168 |
| 113 | 113 | 0.972 |
| 114 | 114 | 0.0886 |
| 115 | 115 | 0.198 |
| 116 | 116 | 0.063 |
| 117 | 117 | 0.782 |
| 118 | 118 | 0.958 |
| 119 | 119 | 0.476 |
| 12 | 12 | 0.514 |
| 120 | 120 | 0.183 |
| 121 | 121 | 0.459 |
| 122 | 122 | 0.105 |
| 123 | 123 | 0.0599 |
| 124 | 124 | 0.836 |
| 125 | 125 | 0.767 |
| 126 | 126 | 0.994 |
| 127 | 127 | 0.516 |
| 128 | 128 | 0.292 |
| 129 | 129 | 0.997 |
| 13 | 13 | 0.502 |
| 130 | 130 | 0.344 |
| 131 | 131 | 0.287 |
| 132 | 132 | 0.726 |
| 133 | 133 | 0.959 |
| 134 | 134 | 0.799 |
| 135 | 135 | 0.491 |
| 136 | 136 | 0.879 |
| 137 | 137 | 0.311 |
| 138 | 138 | 0.3 |
| 139 | 139 | 0.64 |
| 14 | 14 | 0.707 |
| 140 | 140 | 0.684 |
| 141 | 141 | 0.332 |
| 142 | 142 | 0.985 |
| 143 | 143 | 0.302 |
| 144 | 144 | 0.766 |
| 145 | 145 | 0.364 |
| 146 | 146 | 0.675 |
| 147 | 147 | 0.0555 |
| 148 | 148 | 0.849 |
| 149 | 149 | 0.00253 |
| 15 | 15 | 0.868 |
| 150 | 150 | 0.554 |
| 151 | 151 | 0.396 |
| 152 | 152 | 0.0572 |
| 153 | 153 | 0.572 |
| 154 | 154 | 0.833 |
| 155 | 155 | 0.0517 |
| 156 | 156 | 0.474 |
| 157 | 157 | 0.77 |
| 158 | 158 | 0.189 |
| 159 | 159 | 0.731 |
| 16 | 16 | 0.0711 |
| 160 | 160 | 0.0743 |
| 161 | 161 | 0.463 |
| 162 | 162 | 0.497 |
| 163 | 163 | 0.934 |
| 164 | 164 | 0.418 |
| 165 | 165 | 0.0641 |
| 166 | 166 | 0.25 |
| 167 | 167 | 0.819 |
| 168 | 168 | 0.324 |
| 169 | 169 | 0.0171 |
| 17 | 17 | 0.232 |
| 18 | 18 | 0.181 |
| 19 | 19 | 0.00874 |
| 2 | 2 | 0.125 |
| 20 | 20 | 0.184 |
| 21 | 21 | 0.248 |
| 22 | 22 | 0.0598 |
| 23 | 23 | 0.0588 |
| 24 | 24 | 0.531 |
| 25 | 25 | 0.416 |
| 26 | 26 | 0.405 |
| 27 | 27 | 0.0631 |
| 28 | 28 | 0.475 |
| 29 | 29 | 0.886 |
| 3 | 3 | 0.461 |
| 30 | 30 | 0.286 |
| 31 | 31 | 0.59 |
| 32 | 32 | 4.62891e-7 |
| 33 | 33 | 0.711 |
| 34 | 34 | 0.414 |
| 35 | 35 | 0.79 |
| 36 | 36 | 0.122 |
| 37 | 37 | 0.0748 |
| 38 | 38 | 0.809 |
| 39 | 39 | 0.617 |
| 4 | 4 | 0.799 |
| 40 | 40 | 0.53 |
| 41 | 41 | 0.885 |
| 42 | 42 | 0.602 |
| 43 | 43 | 0.219 |
| 44 | 44 | 0.0403 |
| 45 | 45 | 0.309 |
| 46 | 46 | 0.12 |
| 47 | 47 | 0.62 |
| 48 | 48 | 0.591 |
| 49 | 49 | 0.362 |
| 5 | 5 | 0.676 |
| 50 | 50 | 0.495 |
| 51 | 51 | 0.59 |
| 52 | 52 | 0.694 |
| 53 | 53 | 0.634 |
| 54 | 54 | 0.387 |
| 55 | 55 | 0.982 |
| 56 | 56 | 0.5 |
| 57 | 57 | 0.548 |
| 58 | 58 | 0.762 |
| 59 | 59 | 0.0736 |
| 6 | 6 | 0.157 |
| 60 | 60 | 0.662 |
| 61 | 61 | 0.934 |
| 62 | 62 | 0.579 |
| 63 | 63 | 0.266 |
| 64 | 64 | 0.513 |
| 65 | 65 | 0.038 |
| 66 | 66 | 0.956 |
| 67 | 67 | 0.879 |
| 68 | 68 | 0.903 |
| 69 | 69 | 0.811 |
| 7 | 7 | 0.757 |
| 70 | 70 | 0.034 |
| 71 | 71 | 0.265 |
| 72 | 72 | 0.755 |
| 73 | 73 | 0.0423 |
| 74 | 74 | 0.0869 |
| 75 | 75 | 0.994 |
| 76 | 76 | 0.238 |
| 77 | 77 | 0.0808 |
| 78 | 78 | 0.916 |
| 79 | 79 | 0.00258 |
| 8 | 8 | 0.114 |
| 80 | 80 | 0.254 |
| 81 | 81 | 0.524 |
| 82 | 82 | 0.161 |
| 83 | 83 | 0.0424 |
| 84 | 84 | 0.453 |
| 85 | 85 | 0.0139 |
| 86 | 86 | 0.852 |
| 87 | 87 | 0.427 |
| 88 | 88 | 0.612 |
| 89 | 89 | 0.0192 |
| 9 | 9 | 0.277 |
| 90 | 90 | 0.44 |
| 91 | 91 | 0.318 |
| 92 | 92 | 0.0737 |
| 93 | 93 | 0.599 |
| 94 | 94 | 0.241 |
| 95 | 95 | 0.502 |
| 96 | 96 | 0.736 |
| 97 | 97 | 0.582 |
| 98 | 98 | 0.856 |
| 99 | 99 | 0.0121 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12104
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000276 human amniotic membrane cell- fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000276 (human amniotic membrane cell- fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
