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(Created page with "{{f5samples |id=FF:11627-122B7 |name=Mesenchymal Stem Cells - amniotic membrane, donor2 |sample_id=11627 |rna_tube_id=122B7 |rna_box=122 |rna_position=B7 |sample_cell_l...")
 
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{{f5samples
{{f5samples
|id=FF:11627-122B7
|DRA_sample_Accession=CAGE@SAMD00005766
|name=Mesenchymal Stem Cells - amniotic membrane, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005766
|sample_id=11627
|accession_numbers=CAGE;DRX008350;DRR009222;DRZ000647;DRZ002032;DRZ011997;DRZ013382
|rna_tube_id=122B7
|accession_numbers_RNASeq=sRNA-Seq;DRX037045;DRR041411;DRZ007053
|rna_box=122
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
|rna_position=B7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537
|sample_cell_lot=lot:204
|sample_cell_catalog=HMSC.AM-500
|sample_company=CET
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=amnion
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=?
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=1.19000
|rna_od260/280=2.12000
|sample_cell_type=mesenchymal stem cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=44.90000
|rna_concentration=0.99700
|sample_note=
|profile_hcage=CNhs12104,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10004,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002537
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000158,UBERON:0000305,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000478,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0004120,UBERON:0004121,UBERON:0004871,UBERON:0004923,UBERON:0005423,UBERON:0005631
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000092,FF:0000101,FF:0000001,FF:0000276
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.88!74.89!HAND2;;chr7:27224842..27224872,-!p1@HOXA11!1.86!71.77!HOXA11;;chr7:27224795..27224840,-!p2@HOXA11!1.77!58.24!HOXA11;;chr2:176969228..176969260,+!p1@HOXD11!1.70!48.88!HOXD11;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.66!44.72!ZBED1;;chr15:96869255..96869291,+!p6@NR2F2!1.61!70.73!NR2F2;;chr2:176973498..176973524,+!p1@HOXD10!1.48!29.12!HOXD10;;chr15:96869222..96869251,+!p18@NR2F2!1.40!28.08!NR2F2;;chr17:1959369..1959388,+!p2@HIC1!1.39!60.32!HIC1;;chr11:46299199..46299233,+!p1@CREB3L1!1.36!111.29!CREB3L1;;chr15:96869165..96869183,+!p20@NR2F2!1.34!20.80!NR2F2;;chr2:176969179..176969226,+!p2@HOXD11!1.34!20.80!HOXD11;;chr3:138665937..138665968,-!p1@FOXL2!1.34!20.80!FOXL2;;chr4:174450089..174450153,-!p2@HAND2!1.29!18.72!HAND2;;chr15:96876966..96877017,+!p12@NR2F2!1.28!26.00!NR2F2;;chr3:128206762..128206781,-!p2@GATA2!1.25!102.97!GATA2;;chr11:46299539..46299620,+!p2@CREB3L1!1.25!28.08!CREB3L1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!19.76!TFAP2A;;chr15:96874145..96874166,+!p7@NR2F2!1.23!30.16!NR2F2;;chr15:96869206..96869220,+!p21@NR2F2!1.22!15.60!NR2F2;;chr5:92918919..92918942,+!p1@NR2F1!1.20!65.52!NR2F1;;chr15:96869114..96869160,+!p11@NR2F2!1.19!19.76!NR2F2;;chr10:119302232..119302265,+!p1@EMX2!1.19!14.56!EMX2;;chr2:177001290..177001315,+!p1@HOXD3!1.19!14.56!HOXD3;;chr3:128212033..128212051,-!p1@GATA2!1.19!14.56!GATA2;;chr3:138665760..138665772,-!p3@FOXL2!1.19!14.56!FOXL2;;chr1:170632959..170632987,+!p4@PRRX1!1.18!15.60!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!1.14!19.76!PITX1;;chr16:86544113..86544145,+!p1@FOXF1!1.13!15.60!FOXF1;;chr5:134369879..134369898,-!p2@PITX1!1.13!12.48!PITX1;;chr3:138665790..138665809,-!p4@FOXL2!1.13!12.48!FOXL2;;chr15:96869292..96869320,+!p15@NR2F2!1.12!17.68!NR2F2;;chr10:119302645..119302712,+!p3@EMX2!1.09!11.44!EMX2;;chr7:27213893..27213954,-!p1@HOXA10!1.09!11.44!HOXA10;;chr15:57511609..57511651,+!p2@TCF12!1.08!18.72!TCF12;;chr4:174451350..174451363,-!p3@HAND2!1.06!10.40!HAND2;;chr15:96874012..96874042,+!p2@NR2F2!1.02!87.37!NR2F2;;chr5:92919100..92919135,+!p3@NR2F1!1.02!11.44!NR2F1;;chr15:96874244..96874259,+!p5@NR2F2!1.01!22.88!NR2F2;;chr1:170633262..170633285,+!p3@PRRX1!1.00!10.40!PRRX1;;chr8:99956662..99956684,+!p1@OSR2!0.98!13.52!OSR2;;chr10:63809013..63809041,+!p3@ARID5B!0.97!47.84!ARID5B;;chr7:27192185..27192209,-!p1@HOXA3!0.97!8.32!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.97!8.32!HOXA9;;chr2:239756671..239756732,+!p1@TWIST2!0.96!27.04!TWIST2;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.52!TFAP2A;;chr12:80085061..80085119,-!p6@PAWR!0.94!12.48!PAWR;;chr15:96881221..96881240,+!p19@NR2F2!0.94!10.40!NR2F2;;chr2:66662895..66662907,+!p3@MEIS1!0.93!9.36!MEIS1;;chr7:28220198..28220269,-!p2@JAZF1!0.92!67.60!JAZF1;;chr2:176972000..176972025,+!p4@HOXD11!0.92!7.28!HOXD11;;chr3:138665774..138665786,-!p5@FOXL2!0.92!7.28!FOXL2;;chr17:59477233..59477263,+!p1@TBX2!0.91!22.88!TBX2;;chr15:96873984..96873999,+!p3@NR2F2!0.90!53.04!NR2F2;;chr12:115121962..115121987,-!p1@TBX3!0.89!59.28!TBX3;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.68!SNAI2;;chr2:66662281..66662308,+!p1@MEIS1!0.88!23.92!MEIS1;;chr15:37390850..37390909,-!p3@MEIS2!0.88!13.52!MEIS2;;chr11:12696071..12696086,+!p3@TEAD1!0.86!8.32!TEAD1;;chr14:29235961..29236008,+!p1@FOXG1!0.86!6.24!FOXG1;;chr6:10412576..10412599,-!p5@TFAP2A!0.86!6.24!TFAP2A;;chr7:27196217..27196246,-!p2@HOXA7!0.86!6.24!HOXA7;;chr1:170633058..170633084,+!p5@PRRX1!0.86!6.24!PRRX1;;chr2:176969097..176969109,+!p3@HOXD11!0.86!6.24!HOXD11;;chr15:96874927..96874938,+!p8@NR2F2!0.85!13.52!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.82!10.40!ZFP106;;chr15:96873921..96873946,+!p1@NR2F2!0.81!165.37!NR2F2;;chr1:170632285..170632309,+!p1@PRRX1!0.81!6.24!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!0.80!15.60!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!0.79!7.28!PRRX1;;chr5:92919068..92919082,+!p5@NR2F1!0.79!6.24!NR2F1;;chr5:158527104..158527135,-!p4@EBF1!0.79!5.20!EBF1;;chr5:92919312..92919334,+!p13@NR2F1!0.79!5.20!NR2F1;;chr10:114889045..114889074,+!p12@TCF7L2!0.79!5.20!TCF7L2;;chr10:119303078..119303169,+!p2@EMX2!0.79!5.20!EMX2;;chr15:80843484..80843499,+!p5@ARNT2!0.79!5.20!ARNT2;;chr2:176971685..176971700,+!p6@HOXD11!0.79!5.20!HOXD11;;chr2:176981526..176981543,+!p3@HOXD10!0.79!5.20!HOXD10;;chr1:200379104..200379128,-!p2@ZNF281!0.76!12.48!ZNF281;;chr12:80084279..80084293,-!p8@PAWR!0.76!8.32!PAWR;;chr7:44143997..44144008,+!p3@AEBP1!0.76!6.24!AEBP1;;chr5:92919375..92919438,+!p6@NR2F1!0.76!5.20!NR2F1;;chr10:63851319..63851332,+!p11@ARID5B!0.76!5.20!ARID5B;;chr17:1958388..1958404,+!p1@HIC1!0.75!32.24!HIC1;;chr15:96869511..96869525,+!p16@NR2F2!0.75!5.20!NR2F2;;chr19:31840130..31840160,-!p2@TSHZ3!0.74!7.28!TSHZ3;;chr6:10412392..10412409,-!p4@TFAP2A!0.74!5.20!TFAP2A;;chr10:63809106..63809127,+!p1@ARID5B!0.73!65.52!ARID5B;;chr2:185463247..185463263,+!p1@ZNF804A!0.73!8.32!ZNF804A;;chr4:81105027..81105039,+!p3@PRDM8!0.73!5.20!PRDM8;;chr9:35732647..35732678,+!p2@CREB3!0.71!26.00!CREB3;;chr10:63853436..6385344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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002537;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor2.CNhs12104.11627-122B7.hg38.nobarcode.ctss.bed.gz
|id=FF:11627-122B7
|is_a=EFO:0002091;;FF:0000276
|is_obsolete=
|library_id=CNhs12104
|library_id_phase_based=2:CNhs12104
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11627
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.ATGTCA.11627
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11627
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.ATGTCA.11627
|name=Mesenchymal Stem Cells - amniotic membrane, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12104,LSID839,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10004,,,
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|rna_box=122
|rna_catalog_number=N/A
|rna_concentration=0.997
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.19
|rna_od260/280=2.12
|rna_position=B7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=122B7
|rna_weight_ug=44.9
|rnaseq_library_id=SRhi10004.ATGTCA
|sample_age=?
|sample_category=primary cells
|sample_cell_catalog=HMSC.AM-500
|sample_cell_line=
|sample_cell_lot=lot:204
|sample_cell_type=mesenchymal stem cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=CET
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.06814157935936e-206!GO:0005737;cytoplasm;2.03167465904422e-197!GO:0043226;organelle;2.555565395344e-153!GO:0043229;intracellular organelle;7.00366983323577e-153!GO:0043231;intracellular membrane-bound organelle;7.87553417647673e-151!GO:0043227;membrane-bound organelle;1.0941868376688e-150!GO:0044444;cytoplasmic part;1.71046880220815e-148!GO:0044422;organelle part;2.25938692733819e-126!GO:0044446;intracellular organelle part;6.24556609532934e-125!GO:0032991;macromolecular complex;5.51345560692413e-88!GO:0005515;protein binding;4.72034115680309e-72!GO:0005739;mitochondrion;2.08074692753694e-71!GO:0030529;ribonucleoprotein complex;5.82472014107093e-70!GO:0044237;cellular metabolic process;2.07996775701725e-68!GO:0044238;primary metabolic process;9.29967425807753e-67!GO:0043170;macromolecule metabolic process;6.59528854509639e-58!GO:0043233;organelle lumen;8.26163440453427e-58!GO:0031974;membrane-enclosed lumen;8.26163440453427e-58!GO:0031090;organelle membrane;1.44010254831757e-57!GO:0003723;RNA binding;4.03715527602952e-50!GO:0019538;protein metabolic process;8.90102348570552e-50!GO:0044428;nuclear part;1.43249981809708e-48!GO:0044429;mitochondrial part;1.40139334168321e-47!GO:0043234;protein complex;1.42484921397786e-46!GO:0005840;ribosome;6.6684593963139e-46!GO:0016043;cellular component organization and biogenesis;1.04830793308232e-45!GO:0044260;cellular macromolecule metabolic process;1.24086188778109e-44!GO:0044267;cellular protein metabolic process;1.55848897695624e-43!GO:0006412;translation;7.48665649986407e-43!GO:0015031;protein transport;1.37176412084686e-41!GO:0009058;biosynthetic process;1.89396864313152e-41!GO:0005829;cytosol;1.27351912911741e-40!GO:0031967;organelle envelope;1.41744013991728e-40!GO:0003735;structural constituent of ribosome;1.48836506471884e-40!GO:0033036;macromolecule localization;1.76512373716617e-40!GO:0031975;envelope;2.17012094658712e-40!GO:0005634;nucleus;5.50533887233602e-39!GO:0045184;establishment of protein localization;4.51747537108916e-38!GO:0008104;protein localization;8.72790697411072e-38!GO:0044249;cellular biosynthetic process;1.11327176294609e-36!GO:0009059;macromolecule biosynthetic process;1.50889829832999e-35!GO:0046907;intracellular transport;9.74264132642278e-35!GO:0033279;ribosomal subunit;1.02946983485261e-34!GO:0006396;RNA processing;3.35113644671159e-34!GO:0005740;mitochondrial envelope;2.10293916570726e-32!GO:0031966;mitochondrial membrane;5.84363741560708e-31!GO:0031981;nuclear lumen;1.57278443661747e-30!GO:0019866;organelle inner membrane;2.87849109482317e-30!GO:0006996;organelle organization and biogenesis;7.49742401397539e-29!GO:0016071;mRNA metabolic process;2.12985756342252e-28!GO:0005743;mitochondrial inner membrane;3.61837144712627e-28!GO:0006886;intracellular protein transport;7.23885286344568e-28!GO:0065003;macromolecular complex assembly;2.38826783254742e-26!GO:0008380;RNA splicing;1.16813779079132e-25!GO:0043283;biopolymer metabolic process;2.15335337771299e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.40436441991846e-25!GO:0022607;cellular component assembly;5.63797829016491e-25!GO:0006397;mRNA processing;1.85003421893668e-24!GO:0006119;oxidative phosphorylation;2.13520016902362e-24!GO:0005783;endoplasmic reticulum;2.94460494819493e-24!GO:0012505;endomembrane system;1.00303347914461e-23!GO:0043228;non-membrane-bound organelle;1.97952675572281e-23!GO:0043232;intracellular non-membrane-bound organelle;1.97952675572281e-23!GO:0044455;mitochondrial membrane part;1.41157848530701e-22!GO:0044445;cytosolic part;1.58147889969158e-22!GO:0051649;establishment of cellular localization;1.77500577357142e-22!GO:0051641;cellular localization;2.17580081077846e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.72796025587126e-22!GO:0010467;gene expression;3.31513952054263e-21!GO:0044432;endoplasmic reticulum part;1.07123366141037e-19!GO:0005654;nucleoplasm;1.41263012588761e-19!GO:0048770;pigment granule;3.62274200835978e-19!GO:0042470;melanosome;3.62274200835978e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.89338741868903e-19!GO:0016462;pyrophosphatase activity;7.66483279831883e-19!GO:0017111;nucleoside-triphosphatase activity;9.1958312481672e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;9.52274968393553e-19!GO:0005746;mitochondrial respiratory chain;1.28787122364585e-18!GO:0015934;large ribosomal subunit;1.4965245245915e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.54174627983758e-18!GO:0031980;mitochondrial lumen;2.90266989268559e-18!GO:0005759;mitochondrial matrix;2.90266989268559e-18!GO:0006457;protein folding;2.92716997219381e-18!GO:0051186;cofactor metabolic process;1.35714412750841e-17!GO:0005681;spliceosome;2.28094984238391e-17!GO:0015935;small ribosomal subunit;3.24168129788305e-17!GO:0000166;nucleotide binding;5.20977714186655e-17!GO:0005794;Golgi apparatus;1.14692982877321e-16!GO:0006259;DNA metabolic process;1.18800746122889e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.24477247371756e-16!GO:0044451;nucleoplasm part;2.63683725639597e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.79977537788696e-16!GO:0003954;NADH dehydrogenase activity;3.79977537788696e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.79977537788696e-16!GO:0043285;biopolymer catabolic process;9.04252750006328e-16!GO:0016874;ligase activity;1.0659685757185e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.09135547134653e-15!GO:0007049;cell cycle;4.36577891519142e-15!GO:0009057;macromolecule catabolic process;5.6490374635904e-15!GO:0006605;protein targeting;7.2516449645816e-15!GO:0044265;cellular macromolecule catabolic process;7.80569122857822e-15!GO:0044248;cellular catabolic process;1.29987560418768e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.32338998564028e-14!GO:0022618;protein-RNA complex assembly;1.5443772844934e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.61732020485318e-14!GO:0042773;ATP synthesis coupled electron transport;1.61732020485318e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.71188007017628e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.99100848650128e-14!GO:0045271;respiratory chain complex I;1.99100848650128e-14!GO:0005747;mitochondrial respiratory chain complex I;1.99100848650128e-14!GO:0006512;ubiquitin cycle;2.28894339068971e-14!GO:0008134;transcription factor binding;3.35836307849687e-14!GO:0005789;endoplasmic reticulum membrane;4.69390747723838e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.02383953316477e-14!GO:0048193;Golgi vesicle transport;5.61128068281634e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.92320998672811e-14!GO:0005761;mitochondrial ribosome;7.16293686709751e-14!GO:0000313;organellar ribosome;7.16293686709751e-14!GO:0009055;electron carrier activity;7.47836873647764e-14!GO:0030163;protein catabolic process;7.74988541775311e-14!GO:0019941;modification-dependent protein catabolic process;1.03237038814494e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.03237038814494e-13!GO:0044257;cellular protein catabolic process;1.12478540916987e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.06671415646164e-13!GO:0006732;coenzyme metabolic process;3.49389177275406e-13!GO:0051082;unfolded protein binding;4.07723810014798e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.9664670532454e-13!GO:0008135;translation factor activity, nucleic acid binding;6.18674962529789e-13!GO:0032553;ribonucleotide binding;1.17666754778698e-12!GO:0032555;purine ribonucleotide binding;1.17666754778698e-12!GO:0016192;vesicle-mediated transport;1.39064151948151e-12!GO:0017076;purine nucleotide binding;2.57741500706246e-12!GO:0043412;biopolymer modification;3.16306779077732e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.57849761442175e-12!GO:0005730;nucleolus;2.06520461721233e-11!GO:0022402;cell cycle process;2.45958626875052e-11!GO:0006464;protein modification process;4.93120604803316e-11!GO:0012501;programmed cell death;6.35398326963975e-11!GO:0005793;ER-Golgi intermediate compartment;6.84569664512019e-11!GO:0006915;apoptosis;1.69779696982243e-10!GO:0009259;ribonucleotide metabolic process;1.69779696982243e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.8676727065266e-10!GO:0016491;oxidoreductase activity;3.11552235678084e-10!GO:0003712;transcription cofactor activity;3.63159671783141e-10!GO:0006163;purine nucleotide metabolic process;3.75146788459243e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;4.0673788675709e-10!GO:0000375;RNA splicing, via transesterification reactions;4.0673788675709e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.0673788675709e-10!GO:0009150;purine ribonucleotide metabolic process;4.11314760519723e-10!GO:0042623;ATPase activity, coupled;4.29522283704585e-10!GO:0032559;adenyl ribonucleotide binding;4.39064982971503e-10!GO:0005524;ATP binding;5.52390928074582e-10!GO:0000278;mitotic cell cycle;6.09508412356144e-10!GO:0008565;protein transporter activity;6.45968609933469e-10!GO:0008219;cell death;6.88281740328537e-10!GO:0016265;death;6.88281740328537e-10!GO:0003743;translation initiation factor activity;7.02539092315437e-10!GO:0008639;small protein conjugating enzyme activity;1.01900602150561e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.174923711124e-09!GO:0030554;adenyl nucleotide binding;1.21763154257596e-09!GO:0016887;ATPase activity;1.48326077348077e-09!GO:0006413;translational initiation;1.56271326415592e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.67364370744616e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.82700243380142e-09!GO:0006164;purine nucleotide biosynthetic process;1.91744517648795e-09!GO:0004842;ubiquitin-protein ligase activity;1.95890481376917e-09!GO:0019787;small conjugating protein ligase activity;1.95890481376917e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.02325374970616e-09!GO:0009056;catabolic process;2.1905445351526e-09!GO:0005635;nuclear envelope;2.19138955322163e-09!GO:0015078;hydrogen ion transmembrane transporter activity;2.28762255726683e-09!GO:0009260;ribonucleotide biosynthetic process;2.52935183254469e-09!GO:0006446;regulation of translational initiation;2.6191534097396e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.67666703506479e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.67666703506479e-09!GO:0009141;nucleoside triphosphate metabolic process;2.72512919774116e-09!GO:0006974;response to DNA damage stimulus;2.88271630544982e-09!GO:0030120;vesicle coat;3.2776545459823e-09!GO:0030662;coated vesicle membrane;3.2776545459823e-09!GO:0031965;nuclear membrane;4.03079562468888e-09!GO:0015986;ATP synthesis coupled proton transport;4.1025548663327e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.1025548663327e-09!GO:0048523;negative regulation of cellular process;5.25889855484567e-09!GO:0044453;nuclear membrane part;5.5939610289414e-09!GO:0043687;post-translational protein modification;6.82669542439355e-09!GO:0051188;cofactor biosynthetic process;7.07672678778288e-09!GO:0046034;ATP metabolic process;7.40798020167879e-09!GO:0006913;nucleocytoplasmic transport;7.40798020167879e-09!GO:0019829;cation-transporting ATPase activity;7.44151295872183e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.61679188047875e-09!GO:0000074;regulation of progression through cell cycle;1.52779469004884e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.54305323287434e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.54305323287434e-08!GO:0051726;regulation of cell cycle;1.55871777458459e-08!GO:0051169;nuclear transport;1.65582713990837e-08!GO:0009117;nucleotide metabolic process;2.12470782818584e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.57779754974695e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.57779754974695e-08!GO:0007005;mitochondrion organization and biogenesis;2.63361939721913e-08!GO:0042254;ribosome biogenesis and assembly;2.88000251045042e-08!GO:0006461;protein complex assembly;3.64816981404773e-08!GO:0005773;vacuole;3.80274089271073e-08!GO:0044431;Golgi apparatus part;4.08868837684098e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.24177170664381e-08!GO:0006399;tRNA metabolic process;4.24177170664381e-08!GO:0005768;endosome;4.78379105662177e-08!GO:0031988;membrane-bound vesicle;4.96182192019579e-08!GO:0016881;acid-amino acid ligase activity;4.96182192019579e-08!GO:0016023;cytoplasmic membrane-bound vesicle;5.5092715727057e-08!GO:0006754;ATP biosynthetic process;5.92003723523261e-08!GO:0006753;nucleoside phosphate metabolic process;5.92003723523261e-08!GO:0003924;GTPase activity;6.3933150881318e-08!GO:0048475;coated membrane;9.16134560786216e-08!GO:0030117;membrane coat;9.16134560786216e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.34347728832968e-08!GO:0016469;proton-transporting two-sector ATPase complex;9.79137248175447e-08!GO:0048519;negative regulation of biological process;1.06729674175581e-07!GO:0009060;aerobic respiration;1.10955121218035e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.10955121218035e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.10955121218035e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.10955121218035e-07!GO:0005788;endoplasmic reticulum lumen;1.27616997660893e-07!GO:0016604;nuclear body;1.29441214382105e-07!GO:0017038;protein import;1.36130627551961e-07!GO:0016787;hydrolase activity;1.76372466199056e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.82400449719128e-07!GO:0043038;amino acid activation;1.99077358421615e-07!GO:0006418;tRNA aminoacylation for protein translation;1.99077358421615e-07!GO:0043039;tRNA aminoacylation;1.99077358421615e-07!GO:0065002;intracellular protein transport across a membrane;2.60003939588623e-07!GO:0045333;cellular respiration;2.69580435472971e-07!GO:0006091;generation of precursor metabolites and energy;2.92114474010566e-07!GO:0009719;response to endogenous stimulus;3.3261481759642e-07!GO:0006281;DNA repair;3.84466994879997e-07!GO:0051246;regulation of protein metabolic process;4.23172608716937e-07!GO:0051276;chromosome organization and biogenesis;4.23172608716937e-07!GO:0051187;cofactor catabolic process;4.50454937665788e-07!GO:0005798;Golgi-associated vesicle;4.51300331511722e-07!GO:0006323;DNA packaging;5.41190330906647e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.68585460416501e-07!GO:0006916;anti-apoptosis;6.20599045820812e-07!GO:0009109;coenzyme catabolic process;7.26560384864528e-07!GO:0000323;lytic vacuole;7.49085169075888e-07!GO:0005764;lysosome;7.49085169075888e-07!GO:0043067;regulation of programmed cell death;7.59426256107094e-07!GO:0006752;group transfer coenzyme metabolic process;7.67304359139823e-07!GO:0043069;negative regulation of programmed cell death;8.815384738861e-07!GO:0031982;vesicle;1.14772603555781e-06!GO:0009108;coenzyme biosynthetic process;1.15626887035186e-06!GO:0042981;regulation of apoptosis;1.21278287969867e-06!GO:0008026;ATP-dependent helicase activity;1.44384422139823e-06!GO:0031410;cytoplasmic vesicle;1.52734231479434e-06!GO:0031252;leading edge;1.69214121436272e-06!GO:0006099;tricarboxylic acid cycle;1.80274660928712e-06!GO:0046356;acetyl-CoA catabolic process;1.80274660928712e-06!GO:0006366;transcription from RNA polymerase II promoter;1.85643858946831e-06!GO:0043066;negative regulation of apoptosis;1.99449143869599e-06!GO:0032446;protein modification by small protein conjugation;2.03697863748693e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.04072910255215e-06!GO:0016607;nuclear speck;2.70869795638508e-06!GO:0065004;protein-DNA complex assembly;2.80106919664918e-06!GO:0004386;helicase activity;2.81436198132169e-06!GO:0003676;nucleic acid binding;2.84977816488408e-06!GO:0000139;Golgi membrane;3.01588333557103e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.20995930626069e-06!GO:0005643;nuclear pore;3.41769440147001e-06!GO:0016567;protein ubiquitination;3.513154282152e-06!GO:0004298;threonine endopeptidase activity;4.18379068007816e-06!GO:0000087;M phase of mitotic cell cycle;4.36671385512896e-06!GO:0008654;phospholipid biosynthetic process;4.611616066673e-06!GO:0022403;cell cycle phase;4.73422553370625e-06!GO:0045786;negative regulation of progression through cell cycle;5.59117421560379e-06!GO:0006084;acetyl-CoA metabolic process;6.01574354907684e-06!GO:0007067;mitosis;6.03150410722992e-06!GO:0045259;proton-transporting ATP synthase complex;6.07085820233608e-06!GO:0003714;transcription corepressor activity;6.37713894420435e-06!GO:0005770;late endosome;7.48119713247346e-06!GO:0005694;chromosome;7.55486727011106e-06!GO:0005762;mitochondrial large ribosomal subunit;7.72799398893716e-06!GO:0000315;organellar large ribosomal subunit;7.72799398893716e-06!GO:0051301;cell division;8.69493683365155e-06!GO:0045454;cell redox homeostasis;9.49541126750858e-06!GO:0008361;regulation of cell size;1.00042480114384e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.03914010812685e-05!GO:0005667;transcription factor complex;1.04965631888094e-05!GO:0030133;transport vesicle;1.04965631888094e-05!GO:0051789;response to protein stimulus;1.11040194379577e-05!GO:0006986;response to unfolded protein;1.11040194379577e-05!GO:0031968;organelle outer membrane;1.14868214430562e-05!GO:0046930;pore complex;1.24024743518377e-05!GO:0019867;outer membrane;1.3944881260127e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.40699901807012e-05!GO:0016070;RNA metabolic process;1.50170021742111e-05!GO:0016049;cell growth;1.5309446863812e-05!GO:0007010;cytoskeleton organization and biogenesis;1.62596784781452e-05!GO:0044427;chromosomal part;1.6487561191241e-05!GO:0006793;phosphorus metabolic process;1.81312776554177e-05!GO:0006796;phosphate metabolic process;1.81312776554177e-05!GO:0006333;chromatin assembly or disassembly;2.008463807121e-05!GO:0006613;cotranslational protein targeting to membrane;2.0878617020567e-05!GO:0006260;DNA replication;2.12166231688282e-05!GO:0000151;ubiquitin ligase complex;2.19854210840085e-05!GO:0016310;phosphorylation;2.39242490681871e-05!GO:0000785;chromatin;2.42642802016143e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.51147755434533e-05!GO:0015399;primary active transmembrane transporter activity;2.51147755434533e-05!GO:0043623;cellular protein complex assembly;2.53706633480925e-05!GO:0003697;single-stranded DNA binding;2.95313138432097e-05!GO:0030867;rough endoplasmic reticulum membrane;2.95415515155493e-05!GO:0005905;coated pit;2.97973913117809e-05!GO:0044440;endosomal part;2.9900666677982e-05!GO:0010008;endosome membrane;2.9900666677982e-05!GO:0016853;isomerase activity;3.2389542016391e-05!GO:0006364;rRNA processing;3.27591657897807e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.35702186786688e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.4490931320825e-05!GO:0050657;nucleic acid transport;3.93868894932885e-05!GO:0051236;establishment of RNA localization;3.93868894932885e-05!GO:0050658;RNA transport;3.93868894932885e-05!GO:0016740;transferase activity;4.0387880218417e-05!GO:0005791;rough endoplasmic reticulum;4.06227967499294e-05!GO:0006403;RNA localization;4.40338665235849e-05!GO:0051170;nuclear import;4.52736864556265e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.94608439174281e-05!GO:0016072;rRNA metabolic process;5.80955189064405e-05!GO:0000245;spliceosome assembly;6.76470967288337e-05!GO:0015630;microtubule cytoskeleton;6.92538401876817e-05!GO:0001558;regulation of cell growth;6.93727760948214e-05!GO:0016564;transcription repressor activity;7.02102317879429e-05!GO:0005741;mitochondrial outer membrane;7.16813260558724e-05!GO:0006606;protein import into nucleus;7.39933467085973e-05!GO:0005525;GTP binding;7.9759927037243e-05!GO:0003713;transcription coactivator activity;8.91177689551382e-05!GO:0009165;nucleotide biosynthetic process;9.7869173910136e-05!GO:0005048;signal sequence binding;0.000107012148166008!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000119329035837798!GO:0043566;structure-specific DNA binding;0.00015055797702805!GO:0006334;nucleosome assembly;0.000156940137358439!GO:0006839;mitochondrial transport;0.000161708906078465!GO:0030029;actin filament-based process;0.000164511592133485!GO:0046474;glycerophospholipid biosynthetic process;0.000172859577125743!GO:0016568;chromatin modification;0.000177280691468985!GO:0003724;RNA helicase activity;0.000182702571870516!GO:0022890;inorganic cation transmembrane transporter activity;0.000202455446641236!GO:0019899;enzyme binding;0.000254003034786792!GO:0043021;ribonucleoprotein binding;0.000259176164827798!GO:0008250;oligosaccharyl transferase complex;0.000269617700350364!GO:0031497;chromatin assembly;0.000276486695600709!GO:0051329;interphase of mitotic cell cycle;0.000305396689378134!GO:0004576;oligosaccharyl transferase activity;0.00030915831337204!GO:0015992;proton transport;0.000319820349189954!GO:0030663;COPI coated vesicle membrane;0.000326725761026875!GO:0030126;COPI vesicle coat;0.000326725761026875!GO:0033116;ER-Golgi intermediate compartment membrane;0.000340066134744047!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000342871163647955!GO:0016126;sterol biosynthetic process;0.000355711751463729!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000367633521663502!GO:0030659;cytoplasmic vesicle membrane;0.000374542255210837!GO:0043492;ATPase activity, coupled to movement of substances;0.00037696783417552!GO:0006818;hydrogen transport;0.000380231426602797!GO:0005769;early endosome;0.000380956039235533!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000386391062250774!GO:0000314;organellar small ribosomal subunit;0.000388724231493956!GO:0005763;mitochondrial small ribosomal subunit;0.000388724231493956!GO:0016563;transcription activator activity;0.00039379482838343!GO:0005885;Arp2/3 protein complex;0.000417277408151862!GO:0031324;negative regulation of cellular metabolic process;0.000423170512890274!GO:0044262;cellular carbohydrate metabolic process;0.000437056443961288!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000438076285950814!GO:0043284;biopolymer biosynthetic process;0.000438076285950814!GO:0030658;transport vesicle membrane;0.000439065119181432!GO:0006626;protein targeting to mitochondrion;0.000439977422686815!GO:0032561;guanyl ribonucleotide binding;0.000451151826632303!GO:0019001;guanyl nucleotide binding;0.000451151826632303!GO:0006612;protein targeting to membrane;0.000457164953250859!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000462260965106368!GO:0016859;cis-trans isomerase activity;0.000464142681197754!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000464300870078129!GO:0051325;interphase;0.000548123687414162!GO:0048522;positive regulation of cellular process;0.000565832816146721!GO:0051028;mRNA transport;0.000646387676951838!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000649627605904512!GO:0030137;COPI-coated vesicle;0.000676241292680645!GO:0016044;membrane organization and biogenesis;0.000729938955479565!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000777966648142704!GO:0018196;peptidyl-asparagine modification;0.000777966648142704!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000777966648142704!GO:0016779;nucleotidyltransferase activity;0.000825512847064858!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000887364533485793!GO:0000279;M phase;0.000896237990234756!GO:0050794;regulation of cellular process;0.000908475083972585!GO:0051920;peroxiredoxin activity;0.000989921154584002!GO:0044433;cytoplasmic vesicle part;0.00103323592588254!GO:0008610;lipid biosynthetic process;0.00103989844273457!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00105926511917474!GO:0015002;heme-copper terminal oxidase activity;0.00105926511917474!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00105926511917474!GO:0004129;cytochrome-c oxidase activity;0.00105926511917474!GO:0001726;ruffle;0.00112617197957598!GO:0008092;cytoskeletal protein binding;0.00112617197957598!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00119931720763573!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00119931720763573!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00119931720763573!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00121554848173404!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00124099484263403!GO:0030132;clathrin coat of coated pit;0.00125708431966812!GO:0042802;identical protein binding;0.00127756653793694!GO:0006650;glycerophospholipid metabolic process;0.00132543471089051!GO:0030660;Golgi-associated vesicle membrane;0.00134589852210792!GO:0065009;regulation of a molecular function;0.00136013009721908!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00141210097391446!GO:0046467;membrane lipid biosynthetic process;0.0014353554049554!GO:0043681;protein import into mitochondrion;0.00145437445139903!GO:0051252;regulation of RNA metabolic process;0.00145934227228232!GO:0051168;nuclear export;0.00145934227228232!GO:0048471;perinuclear region of cytoplasm;0.00147041238094496!GO:0046489;phosphoinositide biosynthetic process;0.00147041238094496!GO:0005813;centrosome;0.00147041238094496!GO:0006414;translational elongation;0.00152386683973418!GO:0007050;cell cycle arrest;0.00154796924544837!GO:0030027;lamellipodium;0.00167116628190365!GO:0019843;rRNA binding;0.00172370297220405!GO:0006082;organic acid metabolic process;0.00174724219375428!GO:0006979;response to oxidative stress;0.00174724219375428!GO:0048468;cell development;0.00175437797530475!GO:0012506;vesicle membrane;0.00185996357511289!GO:0007243;protein kinase cascade;0.00188532737978272!GO:0019752;carboxylic acid metabolic process;0.00194183943689658!GO:0051427;hormone receptor binding;0.0020017965255797!GO:0003729;mRNA binding;0.00203568835156446!GO:0000082;G1/S transition of mitotic cell cycle;0.00206041532879593!GO:0007006;mitochondrial membrane organization and biogenesis;0.00209161806179742!GO:0030176;integral to endoplasmic reticulum membrane;0.00209919559028754!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00218497680366051!GO:0030118;clathrin coat;0.00237706875880599!GO:0046483;heterocycle metabolic process;0.00244572314501578!GO:0003899;DNA-directed RNA polymerase activity;0.00244855310900674!GO:0009892;negative regulation of metabolic process;0.00255346847673326!GO:0040008;regulation of growth;0.00257889608258731!GO:0006695;cholesterol biosynthetic process;0.00258108405037583!GO:0005819;spindle;0.00258446147821248!GO:0008186;RNA-dependent ATPase activity;0.00263942864140138!GO:0005815;microtubule organizing center;0.00272998758407375!GO:0006891;intra-Golgi vesicle-mediated transport;0.00302594668800717!GO:0043488;regulation of mRNA stability;0.00321839792971745!GO:0043487;regulation of RNA stability;0.00321839792971745!GO:0048487;beta-tubulin binding;0.00326271965341335!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00332635856145441!GO:0030125;clathrin vesicle coat;0.00350871997037711!GO:0030665;clathrin coated vesicle membrane;0.00350871997037711!GO:0000059;protein import into nucleus, docking;0.00354912061615379!GO:0035257;nuclear hormone receptor binding;0.00358889726086227!GO:0048500;signal recognition particle;0.00376332029203308!GO:0004177;aminopeptidase activity;0.00401452768476827!GO:0005774;vacuolar membrane;0.00413884981663079!GO:0008632;apoptotic program;0.00420148403319871!GO:0006118;electron transport;0.00422421655775073!GO:0051287;NAD binding;0.00446465479626878!GO:0006778;porphyrin metabolic process;0.00468170700376269!GO:0033013;tetrapyrrole metabolic process;0.00468170700376269!GO:0045045;secretory pathway;0.00472135344394039!GO:0006595;polyamine metabolic process;0.00494381853126295!GO:0017166;vinculin binding;0.00497098501936673!GO:0046519;sphingoid metabolic process;0.00499944858133706!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00500197516977357!GO:0007040;lysosome organization and biogenesis;0.00503290387317184!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00504747947167992!GO:0030134;ER to Golgi transport vesicle;0.00507422630504538!GO:0045792;negative regulation of cell size;0.005221242027454!GO:0005637;nuclear inner membrane;0.00548456321466759!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00551323573580822!GO:0030127;COPII vesicle coat;0.00597900083887138!GO:0012507;ER to Golgi transport vesicle membrane;0.00597900083887138!GO:0004004;ATP-dependent RNA helicase activity;0.00669760224675482!GO:0030308;negative regulation of cell growth;0.00680660580709517!GO:0006509;membrane protein ectodomain proteolysis;0.0068966906008528!GO:0033619;membrane protein proteolysis;0.0068966906008528!GO:0006497;protein amino acid lipidation;0.00730003148485912!GO:0006740;NADPH regeneration;0.00737430613763077!GO:0006098;pentose-phosphate shunt;0.00737430613763077!GO:0006520;amino acid metabolic process;0.00806053324280095!GO:0006672;ceramide metabolic process;0.00807802019591842!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00819466024690442!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00819466024690442!GO:0007033;vacuole organization and biogenesis;0.00820204617092101!GO:0031124;mRNA 3'-end processing;0.00820204617092101!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00834704893599313!GO:0045047;protein targeting to ER;0.00834704893599313!GO:0051128;regulation of cellular component organization and biogenesis;0.00851446455700758!GO:0007264;small GTPase mediated signal transduction;0.00865500098245803!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00881496833828108!GO:0008139;nuclear localization sequence binding;0.00881496833828108!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00901049426280802!GO:0031072;heat shock protein binding;0.00905805538070529!GO:0044437;vacuolar part;0.00908284769399869!GO:0006402;mRNA catabolic process;0.00914507394471897!GO:0050789;regulation of biological process;0.00944725019725025!GO:0005869;dynactin complex;0.00982908817640004!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00982908817640004!GO:0005684;U2-dependent spliceosome;0.00982908817640004!GO:0006779;porphyrin biosynthetic process;0.00982908817640004!GO:0033014;tetrapyrrole biosynthetic process;0.00982908817640004!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0103474194624546!GO:0042158;lipoprotein biosynthetic process;0.0105390958067172!GO:0003746;translation elongation factor activity;0.0110007688065614!GO:0042168;heme metabolic process;0.011278426923595!GO:0048518;positive regulation of biological process;0.0113541352484213!GO:0033673;negative regulation of kinase activity;0.0114177299365437!GO:0006469;negative regulation of protein kinase activity;0.0114177299365437!GO:0003684;damaged DNA binding;0.0114605628198795!GO:0009967;positive regulation of signal transduction;0.0114605628198795!GO:0016272;prefoldin complex;0.0114605628198795!GO:0030384;phosphoinositide metabolic process;0.0118808981805278!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0119259178069126!GO:0045936;negative regulation of phosphate metabolic process;0.0122824515004896!GO:0051087;chaperone binding;0.0129064044482924!GO:0008180;signalosome;0.0129169794644128!GO:0006892;post-Golgi vesicle-mediated transport;0.0129804627436216!GO:0031902;late endosome membrane;0.0132573098899921!GO:0000049;tRNA binding;0.0132598140304362!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0132598140304362!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0134553900824474!GO:0051348;negative regulation of transferase activity;0.013455597721139!GO:0008286;insulin receptor signaling pathway;0.0139501253095429!GO:0008022;protein C-terminus binding;0.0141346659256811!GO:0005862;muscle thin filament tropomyosin;0.0141346659256811!GO:0050662;coenzyme binding;0.0146476272002422!GO:0000075;cell cycle checkpoint;0.0147496497329438!GO:0016363;nuclear matrix;0.0147541441320083!GO:0050811;GABA receptor binding;0.0148904821467186!GO:0005765;lysosomal membrane;0.015055296760633!GO:0016125;sterol metabolic process;0.01530532717751!GO:0006383;transcription from RNA polymerase III promoter;0.0155447328101149!GO:0015631;tubulin binding;0.0157150468579825!GO:0051540;metal cluster binding;0.0157351590239356!GO:0051536;iron-sulfur cluster binding;0.0157351590239356!GO:0030119;AP-type membrane coat adaptor complex;0.0157351590239356!GO:0006984;ER-nuclear signaling pathway;0.0160626761744682!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.016255659243058!GO:0006289;nucleotide-excision repair;0.0164326538713805!GO:0008320;protein transmembrane transporter activity;0.0166883309999963!GO:0000096;sulfur amino acid metabolic process;0.0167465529947406!GO:0008047;enzyme activator activity;0.017719314931116!GO:0031543;peptidyl-proline dioxygenase activity;0.0178489587185317!GO:0008312;7S RNA binding;0.0183624615004373!GO:0006506;GPI anchor biosynthetic process;0.0190841546245441!GO:0003711;transcription elongation regulator activity;0.0194644271315278!GO:0016481;negative regulation of transcription;0.0194644271315278!GO:0033559;unsaturated fatty acid metabolic process;0.0194644271315278!GO:0006636;unsaturated fatty acid biosynthetic process;0.0194644271315278!GO:0006739;NADP metabolic process;0.0194876200070832!GO:0019206;nucleoside kinase activity;0.0194876200070832!GO:0043433;negative regulation of transcription factor activity;0.0204349836479369!GO:0006767;water-soluble vitamin metabolic process;0.0204480701359344!GO:0006611;protein export from nucleus;0.0210232169084603!GO:0045926;negative regulation of growth;0.0213791212565149!GO:0003690;double-stranded DNA binding;0.0216632007760112!GO:0031529;ruffle organization and biogenesis;0.0217035108532428!GO:0043022;ribosome binding;0.0218046802339739!GO:0030041;actin filament polymerization;0.0218598402183014!GO:0006352;transcription initiation;0.0218706803060427!GO:0046426;negative regulation of JAK-STAT cascade;0.021966783236004!GO:0008033;tRNA processing;0.022147661618957!GO:0030508;thiol-disulfide exchange intermediate activity;0.0224010398535332!GO:0007051;spindle organization and biogenesis;0.022472146513943!GO:0008154;actin polymerization and/or depolymerization;0.0229101986698628!GO:0006505;GPI anchor metabolic process;0.0231508736250472!GO:0006783;heme biosynthetic process;0.0231911989859605!GO:0035258;steroid hormone receptor binding;0.0232074782420945!GO:0006261;DNA-dependent DNA replication;0.0233142806700719!GO:0050790;regulation of catalytic activity;0.0233142806700719!GO:0006643;membrane lipid metabolic process;0.0238540787219898!GO:0005832;chaperonin-containing T-complex;0.0238591592307472!GO:0030131;clathrin adaptor complex;0.024285834459498!GO:0030503;regulation of cell redox homeostasis;0.0253631549048837!GO:0031418;L-ascorbic acid binding;0.0253631549048837!GO:0019798;procollagen-proline dioxygenase activity;0.0255584043817329!GO:0016197;endosome transport;0.0257931045045027!GO:0008637;apoptotic mitochondrial changes;0.0270689107360492!GO:0016646;oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor;0.0272586200204496!GO:0007021;tubulin folding;0.0276177721421703!GO:0006897;endocytosis;0.0276177721421703!GO:0010324;membrane invagination;0.0276177721421703!GO:0006950;response to stress;0.0276177721421703!GO:0006401;RNA catabolic process;0.0281690676836164!GO:0007034;vacuolar transport;0.0284475470231871!GO:0031625;ubiquitin protein ligase binding;0.0284832902073345!GO:0048037;cofactor binding;0.0285735380507141!GO:0033239;negative regulation of amine metabolic process;0.0286000205253648!GO:0045763;negative regulation of amino acid metabolic process;0.0286000205253648!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0286000205253648!GO:0007160;cell-matrix adhesion;0.0286000205253648!GO:0031589;cell-substrate adhesion;0.0286877670755508!GO:0008147;structural constituent of bone;0.028823398932786!GO:0003678;DNA helicase activity;0.029465105127579!GO:0000209;protein polyubiquitination;0.0294848318240643!GO:0006007;glucose catabolic process;0.0300508320113736!GO:0006733;oxidoreduction coenzyme metabolic process;0.0301245826274217!GO:0051539;4 iron, 4 sulfur cluster binding;0.03019695891722!GO:0030880;RNA polymerase complex;0.03019695891722!GO:0007569;cell aging;0.0302932701231465!GO:0042326;negative regulation of phosphorylation;0.0302932701231465!GO:0000339;RNA cap binding;0.0311750349241208!GO:0031901;early endosome membrane;0.0313985058071758!GO:0005874;microtubule;0.0314091523919104!GO:0006807;nitrogen compound metabolic process;0.0322992100330726!GO:0016251;general RNA polymerase II transcription factor activity;0.0323037399161409!GO:0000786;nucleosome;0.0323378254885263!GO:0035035;histone acetyltransferase binding;0.0324071471323825!GO:0030140;trans-Golgi network transport vesicle;0.0324540225938445!GO:0006354;RNA elongation;0.0326738421781569!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0327004946928734!GO:0005669;transcription factor TFIID complex;0.0331583408439735!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0335274190580385!GO:0010257;NADH dehydrogenase complex assembly;0.0335274190580385!GO:0033108;mitochondrial respiratory chain complex assembly;0.0335274190580385!GO:0022408;negative regulation of cell-cell adhesion;0.0335274190580385!GO:0008168;methyltransferase activity;0.0342870245422996!GO:0005096;GTPase activator activity;0.0348471808143523!GO:0016860;intramolecular oxidoreductase activity;0.0350627258708681!GO:0047485;protein N-terminus binding;0.0357437896224554!GO:0008243;plasminogen activator activity;0.0357437896224554!GO:0031123;RNA 3'-end processing;0.0364403534679053!GO:0030521;androgen receptor signaling pathway;0.0366208194142516!GO:0016741;transferase activity, transferring one-carbon groups;0.0368065321834006!GO:0006720;isoprenoid metabolic process;0.0381044690469242!GO:0030833;regulation of actin filament polymerization;0.0384605128906281!GO:0003756;protein disulfide isomerase activity;0.0386139424536296!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0386139424536296!GO:0003779;actin binding;0.0389387179103362!GO:0006518;peptide metabolic process;0.0390452142238621!GO:0000287;magnesium ion binding;0.0392850754186079!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0392850754186079!GO:0033043;regulation of organelle organization and biogenesis;0.0392850754186079!GO:0006790;sulfur metabolic process;0.0407517221824356!GO:0009308;amine metabolic process;0.0411473877325121!GO:0008652;amino acid biosynthetic process;0.0414067100266805!GO:0006769;nicotinamide metabolic process;0.0415356264637482!GO:0008242;omega peptidase activity;0.0416670590859014!GO:0032940;secretion by cell;0.0421433742467556!GO:0004448;isocitrate dehydrogenase activity;0.0422949132563846!GO:0005581;collagen;0.042619801779969!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0427218490982416!GO:0000118;histone deacetylase complex;0.0434027805497335!GO:0016408;C-acyltransferase activity;0.0434027805497335!GO:0003923;GPI-anchor transamidase activity;0.0434027805497335!GO:0016255;attachment of GPI anchor to protein;0.0434027805497335!GO:0042765;GPI-anchor transamidase complex;0.0434027805497335!GO:0008601;protein phosphatase type 2A regulator activity;0.0434027805497335!GO:0045334;clathrin-coated endocytic vesicle;0.0435500330921195!GO:0008538;proteasome activator activity;0.0435955404026516!GO:0022884;macromolecule transmembrane transporter activity;0.0437312813993362!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0437312813993362!GO:0051881;regulation of mitochondrial membrane potential;0.0439237400525584!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0440294430427258!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0440294430427258!GO:0046813;virion attachment, binding of host cell surface receptor;0.0440294430427258!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0440294430427258!GO:0045941;positive regulation of transcription;0.0440764301825027!GO:0030911;TPR domain binding;0.0451299204873258!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0461706170176724!GO:0030145;manganese ion binding;0.0465818623781215!GO:0031301;integral to organelle membrane;0.0470262438348337!GO:0006302;double-strand break repair;0.0471637689089928!GO:0005784;translocon complex;0.0471817595885987!GO:0050178;phenylpyruvate tautomerase activity;0.0479268721018728!GO:0004722;protein serine/threonine phosphatase activity;0.0487686485044048!GO:0044452;nucleolar part;0.0491259856160447!GO:0030032;lamellipodium biogenesis;0.0491364199144336!GO:0009116;nucleoside metabolic process;0.0493482042535169!GO:0006378;mRNA polyadenylation;0.0495103308493452!GO:0018193;peptidyl-amino acid modification;0.0495103308493452
|sample_id=11627
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=amnion
|top_motifs=ESR1:1.71608865123;SRF:1.69210240129;TAL1_TCF{3,4,12}:1.46002614422;RXR{A,B,G}:1.40684309317;RXRA_VDR{dimer}:1.31588972362;GZF1:1.27372560919;NR6A1:1.23541947103;HES1:1.22548465282;TP53:1.12210083026;SMAD1..7,9:1.10337211676;TFAP4:1.07728303577;UFEwm:1.03682432102;TEAD1:1.0263232184;NR3C1:1.00362795217;GLI1..3:0.995368755891;MAFB:0.916279906687;ALX4:0.884761547846;TLX1..3_NFIC{dimer}:0.866083501057;HSF1,2:0.813871384468;ZNF238:0.785694870502;TFCP2:0.771745276688;ZBTB6:0.759830695262;NKX2-2,8:0.756559560979;TBX4,5:0.753008783586;SREBF1,2:0.74174250313;HAND1,2:0.730102644038;CDC5L:0.726164138526;LHX3,4:0.717929348621;KLF4:0.702624614653;LEF1_TCF7_TCF7L1,2:0.7024819506;HMX1:0.700605837339;ARID5B:0.682920254292;HMGA1,2:0.680279290194;TEF:0.647710211422;PAX1,9:0.639572870524;NFE2L1:0.632221314885;TFAP2{A,C}:0.622698469167;GTF2I:0.619603538892;SPZ1:0.585537822578;PAX6:0.576516845226;PRDM1:0.565978380761;ADNP_IRX_SIX_ZHX:0.565558882376;PAX3,7:0.553236973321;CRX:0.544447226376;DBP:0.533610481102;EBF1:0.518921908149;TBP:0.502984082024;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.488567053697;GFI1B:0.487359875094;GCM1,2:0.48508265265;SOX17:0.457044597029;POU3F1..4:0.447023636405;PAX4:0.446485101981;GTF2A1,2:0.443340908729;RREB1:0.422591957379;PPARG:0.398515735432;POU5F1:0.394840708275;HOX{A5,B5}:0.378711377183;NKX2-3_NKX2-5:0.3652117916;GATA4:0.357405383753;NKX3-1:0.355052617543;XBP1:0.348724604901;NFATC1..3:0.34598483375;ZIC1..3:0.341977671236;EN1,2:0.336813451856;TFAP2B:0.310952689662;HIF1A:0.291839545114;ZNF384:0.289754591651;HIC1:0.286753491923;MZF1:0.278137435934;NFE2L2:0.229942061883;NR1H4:0.222446641621;HLF:0.197418795849;PATZ1:0.195375771214;NHLH1,2:0.183378624106;bHLH_family:0.174516778413;MYFfamily:0.169181910382;ZNF423:0.16625562042;ESRRA:0.164676501903;HOX{A4,D4}:0.131728853956;REST:0.114104601934;HNF4A_NR2F1,2:0.103573189914;MTE{core}:0.0933686206045;ATF6:0.087765403567;PAX5:0.0848435474281;ONECUT1,2:0.0752848157238;TOPORS:0.0711074864278;BACH2:0.0569456316995;FOXD3:0.0544460583992;ZNF148:0.0392267317709;SOX5:0.0279686143259;IKZF1:0.0249480533169;HNF1A:0.0182952658611;MYBL2:0.0169224927387;MEF2{A,B,C,D}:-0.00347291625633;FOXM1:-0.0260513590031;NFE2:-0.0262575047901;XCPE1{core}:-0.0401463398827;HOX{A6,A7,B6,B7}:-0.0523475439878;POU1F1:-0.0736206568004;FOXL1:-0.075029243439;FOS_FOS{B,L1}_JUN{B,D}:-0.0824235487972;MED-1{core}:-0.0955042168936;NANOG{mouse}:-0.0978090474212;ATF2:-0.113852547408;YY1:-0.11458540354;NKX3-2:-0.114640112231;EGR1..3:-0.122088899934;PAX8:-0.122174387949;ZFP161:-0.133730180982;FOX{I1,J2}:-0.144200600345;MYB:-0.144878600636;HOXA9_MEIS1:-0.148269416204;MAZ:-0.165401759356;DMAP1_NCOR{1,2}_SMARC:-0.167154212549;TFDP1:-0.191444815716;MTF1:-0.206765525858;SOX2:-0.20829707408;SP1:-0.217780997816;NR5A1,2:-0.229977251071;ALX1:-0.26472939462;IRF1,2:-0.279077093045;AHR_ARNT_ARNT2:-0.280088628616;FOSL2:-0.291206829347;PAX2:-0.297286352031;CEBPA,B_DDIT3:-0.318502982578;NFKB1_REL_RELA:-0.32227461355;EVI1:-0.346964013323;NKX6-1,2:-0.347232646624;RFX1:-0.374441384044;ATF5_CREB3:-0.39964665532;NRF1:-0.40136354551;GFI1:-0.403917525893;PRRX1,2:-0.405431465731;SPIB:-0.406216976969;IRF7:-0.407948335664;NFIX:-0.41730120241;LMO2:-0.422212381398;ETS1,2:-0.424148214128;FOXP3:-0.443316174255;FOXQ1:-0.447735644885;FOX{D1,D2}:-0.469324729414;RBPJ:-0.49019219519;AIRE:-0.52446228987;SPI1:-0.531610627296;SNAI1..3:-0.537900849503;AR:-0.54887754839;POU6F1:-0.558317442948;RUNX1..3:-0.563783629498;TGIF1:-0.564322225189;MYOD1:-0.579069086379;ZNF143:-0.592002999348;CDX1,2,4:-0.592324750071;CREB1:-0.60107978121;FOXA2:-0.601449580355;ZBTB16:-0.605871166445;STAT2,4,6:-0.618438628407;E2F1..5:-0.625187404423;FOXN1:-0.683017320302;PBX1:-0.693364223373;ELF1,2,4:-0.70650302706;ZEB1:-0.707513941453;ELK1,4_GABP{A,B1}:-0.71022885104;GATA6:-0.719889904728;POU2F1..3:-0.741136793543;NFY{A,B,C}:-0.741205407747;CUX2:-0.747725904943;FOXP1:-0.748379835019;HBP1_HMGB_SSRP1_UBTF:-0.805045513385;OCT4_SOX2{dimer}:-0.823642346712;STAT5{A,B}:-0.830791262385;IKZF2:-0.845635439636;PDX1:-0.85957653658;JUN:-0.872396883483;RFX2..5_RFXANK_RFXAP:-0.897905221451;FOXO1,3,4:-0.907270605241;RORA:-0.917477234381;SOX{8,9,10}:-0.920175580132;NFIL3:-0.981166078496;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.00685628561;FOX{F1,F2,J1}:-1.03444493167;BPTF:-1.0495971083;BREu{core}:-1.07429208974;T:-1.08297872565;NKX2-1,4:-1.14622376358;NANOG:-1.15920740757;PITX1..3:-1.19059533377;STAT1,3:-1.22441951569;VSX1,2:-1.50085710179;EP300:-1.52014741593;ATF4:-1.54289970656;TLX2:-1.92514377867
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11627-122B7;search_select_hide=table117:FF:11627-122B7
}}
}}

Latest revision as of 18:12, 4 June 2020

Name:Mesenchymal Stem Cells - amniotic membrane, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12104
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueamnion
dev stageNA
sexfemale
age?
cell typemesenchymal stem cell
cell lineNA
companyCET
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005766
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12104 CAGE DRX008350 DRR009222
Accession ID Hg19

Library idBAMCTSS
CNhs12104 DRZ000647 DRZ002032
Accession ID Hg38

Library idBAMCTSS
CNhs12104 DRZ011997 DRZ013382
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005766
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.ATGTCA sRNA-Seq DRX037045 DRR041411
Accession ID Hg19

Library idBAMCTSS
SRhi10004.ATGTCA DRZ007053


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0947
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.615
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0561
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.235
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.165
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.31
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.129
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0429
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.161
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0159
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.489
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0185
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0154
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.31
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.489
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.292
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12104

Jaspar motifP-value
MA0002.20.911
MA0003.10.253
MA0004.10.71
MA0006.10.11
MA0007.10.357
MA0009.10.686
MA0014.10.477
MA0017.10.566
MA0018.21.43312e-7
MA0019.10.382
MA0024.12.05184e-4
MA0025.10.00936
MA0027.10.795
MA0028.10.00758
MA0029.10.522
MA0030.10.0425
MA0031.10.087
MA0035.20.692
MA0038.10.0773
MA0039.20.167
MA0040.10.668
MA0041.10.462
MA0042.10.499
MA0043.11.29419e-6
MA0046.10.378
MA0047.20.122
MA0048.10.876
MA0050.10.504
MA0051.10.258
MA0052.10.569
MA0055.10.713
MA0057.10.139
MA0058.10.807
MA0059.10.948
MA0060.16.94485e-6
MA0061.10.813
MA0062.21.31729e-7
MA0065.20.552
MA0066.10.147
MA0067.10.00684
MA0068.10.308
MA0069.10.231
MA0070.10.678
MA0071.10.159
MA0072.10.646
MA0073.10.985
MA0074.10.476
MA0076.19.8922e-5
MA0077.10.917
MA0078.10.791
MA0079.20.487
MA0080.22.40537e-6
MA0081.10.0111
MA0083.16.80638e-8
MA0084.10.881
MA0087.10.676
MA0088.10.684
MA0090.10.00199
MA0091.10.00656
MA0092.10.0908
MA0093.10.701
MA0099.20.816
MA0100.10.224
MA0101.10.0497
MA0102.20.0448
MA0103.10.237
MA0104.20.124
MA0105.10.453
MA0106.10.0742
MA0107.10.144
MA0108.20.068
MA0111.10.702
MA0112.20.00194
MA0113.10.913
MA0114.10.535
MA0115.10.36
MA0116.10.784
MA0117.10.495
MA0119.10.148
MA0122.10.196
MA0124.10.0614
MA0125.10.9
MA0131.10.0394
MA0135.10.677
MA0136.11.46335e-9
MA0137.20.00232
MA0138.20.507
MA0139.10.343
MA0140.10.9
MA0141.10.593
MA0142.10.224
MA0143.10.815
MA0144.10.451
MA0145.10.279
MA0146.10.0855
MA0147.10.0969
MA0148.10.438
MA0149.10.931
MA0150.10.565
MA0152.10.955
MA0153.10.44
MA0154.10.365
MA0155.10.0726
MA0156.11.56128e-7
MA0157.10.194
MA0159.10.194
MA0160.10.911
MA0162.10.0495
MA0163.10.063
MA0164.10.867
MA0258.10.0881
MA0259.10.193



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12104

Novel motifP-value
10.941
100.8
1000.76
1010.797
1020.164
1030.507
1040.367
1050.633
1060.0291
1070.0592
1080.235
1090.328
110.28
1100.296
1110.697
1120.168
1130.972
1140.0886
1150.198
1160.063
1170.782
1180.958
1190.476
120.514
1200.183
1210.459
1220.105
1230.0599
1240.836
1250.767
1260.994
1270.516
1280.292
1290.997
130.502
1300.344
1310.287
1320.726
1330.959
1340.799
1350.491
1360.879
1370.311
1380.3
1390.64
140.707
1400.684
1410.332
1420.985
1430.302
1440.766
1450.364
1460.675
1470.0555
1480.849
1490.00253
150.868
1500.554
1510.396
1520.0572
1530.572
1540.833
1550.0517
1560.474
1570.77
1580.189
1590.731
160.0711
1600.0743
1610.463
1620.497
1630.934
1640.418
1650.0641
1660.25
1670.819
1680.324
1690.0171
170.232
180.181
190.00874
20.125
200.184
210.248
220.0598
230.0588
240.531
250.416
260.405
270.0631
280.475
290.886
30.461
300.286
310.59
324.62891e-7
330.711
340.414
350.79
360.122
370.0748
380.809
390.617
40.799
400.53
410.885
420.602
430.219
440.0403
450.309
460.12
470.62
480.591
490.362
50.676
500.495
510.59
520.694
530.634
540.387
550.982
560.5
570.548
580.762
590.0736
60.157
600.662
610.934
620.579
630.266
640.513
650.038
660.956
670.879
680.903
690.811
70.757
700.034
710.265
720.755
730.0423
740.0869
750.994
760.238
770.0808
780.916
790.00258
80.114
800.254
810.524
820.161
830.0424
840.453
850.0139
860.852
870.427
880.612
890.0192
90.277
900.44
910.318
920.0737
930.599
940.241
950.502
960.736
970.582
980.856
990.0121



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12104


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000276 (human amniotic membrane cell- fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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