FF:11755-123G9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005356 | |||
|accession_numbers=CAGE;DRX008554;DRR009426;DRZ000851;DRZ002236;DRZ012201;DRZ013586 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0002494,CL:0000034,CL:0000569 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0002494,CL:0000034,CL:0000569 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.83!66.98!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.82!65.06!SOX17;;chr1:170632285..170632309,+!p1@PRRX1!1.35!24.10!PRRX1;;chr3:141105705..141105770,+!p4@ZBTB38!1.32!24.10!ZBTB38;;chr8:11561684..11561751,+!p1@GATA4!1.29!18.63!GATA4;;chr20:6748325..6748352,+!p1@BMP2!1.27!25.43!BMP2;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.59!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.23!18.48!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!1.21!15.23!TBX20;;chr8:72756637..72756664,-!p3@MSC!1.19!16.41!MSC;;chr21:36260773..36260804,-!p7@RUNX1!1.18!18.93!RUNX1;;chr3:141087393..141087426,+!p3@ZBTB38!1.13!50.12!ZBTB38;;chr10:131762504..131762555,-!p1@EBF3!1.07!10.79!EBF3;;chr3:141087454..141087465,+!p19@ZBTB38!1.06!10.50!ZBTB38;;chr21:38071430..38071456,+!p1@SIM2!1.05!10.20!SIM2;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.20!KDM5D;;chr8:72756667..72756736,-!p2@MSC!0.99!13.75!MSC;;chrY:2803415..2803468,+!p1@ZFY!0.99!8.72!ZFY;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.51!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.21!HMGA2;;chr14:29234581..29234601,+!p2@FOXG1!0.98!8.58!FOXG1;;chr2:102091144..102091183,-!p2@RFX8!0.98!8.58!RFX8;;chr8:72756267..72756296,-!p4@MSC!0.96!12.12!MSC;;chr11:125034640..125034655,+!p1@PKNOX2!0.92!7.39!PKNOX2;;chr4:174450089..174450153,-!p2@HAND2!0.91!7.10!HAND2;;chr12:52445218..52445237,+!p1@NR4A1!0.88!87.68!NR4A1;;chr2:239756671..239756732,+!p1@TWIST2!0.88!22.18!TWIST2;;chr18:19749541..19749557,+!p1@GATA6!0.88!21.88!GATA6;;chr1:170632959..170632987,+!p4@PRRX1!0.88!7.24!PRRX1;;chr19:42636586..42636607,-!p1@POU2F2!0.87!18.78!POU2F2;;chr11:46299199..46299233,+!p1@CREB3L1!0.86!34.15!CREB3L1;;chr20:50179368..50179392,-!p2@NFATC2!0.86!8.28!NFATC2;;chr14:29236269..29236285,+!p3@FOXG1!0.86!6.21!FOXG1;;chr9:16705069..16705086,-!p3@BNC2!0.86!6.21!BNC2;;chr8:72756063..72756125,-!p1@MSC!0.85!12.86!MSC;;chr2:102091566..102091581,-!p1@RFX8!0.85!6.06!RFX8;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.06!PRRX1;;chr3:157823517..157823562,-!p1@SHOX2!0.84!6.36!SHOX2;;chr14:29235961..29236008,+!p1@FOXG1!0.84!5.91!FOXG1;;chr1:151032860..151032918,+!p1@MLLT11!0.81!70.08!MLLT11;;chr2:239756739..239756755,+!p2@TWIST2!0.79!9.31!TWIST2;;chr11:65686732..65686756,+!p2@DRAP1!0.77!22.33!DRAP1;;chr12:66218836..66218888,+!p1@HMGA2!0.76!48.64!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.76!5.91!TBX18;;chr1:170632137..170632172,+!p10@PRRX1!0.76!4.73!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.76!4.73!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.75!10.20!EGR2;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.28!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!0.75!4.58!PRRX1;;chr10:35484053..35484076,+!p1@CREM!0.74!12.27!CREM;;chr15:83953397..83953425,-!p1@BNC1!0.74!5.32!BNC1;;chr19:45971246..45971265,+!p1@FOSB!0.72!89.30!FOSB;;chr11:65687362..65687436,+!p3@DRAP1!0.72!21.44!DRAP1;;chr7:28448965..28448994,+!p2@CREB5!0.72!16.56!CREB5;;chr18:53068911..53068935,-!p4@TCF4!0.72!4.88!TCF4;;chr1:170632647..170632659,+!p17@PRRX1!0.72!4.29!PRRX1;;chr11:34642612..34642646,+!p1@EHF!0.71!4.14!EHF;;chr7:44143925..44143970,+!p1@AEBP1!0.70!102.61!AEBP1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.70!55.74!ZC3H12A;;chr1:221052776..221052799,+!p1@HLX!0.70!7.84!HLX;;chr11:125034605..125034636,+!p2@PKNOX2!0.70!3.99!PKNOX2;;chr6:106534192..106534224,+!p1@PRDM1!0.69!12.12!PRDM1;;chr8:77593750..77593757,+!p3@ZFHX4!0.69!3.84!ZFHX4;;chr19:46801639..46801699,+!p1@HIF3A!0.69!3.84!HIF3A;;chr1:170632115..170632136,+!p9@PRRX1!0.69!3.84!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.68!10.65!TWIST1;;chr19:31840130..31840160,-!p2@TSHZ3!0.68!6.21!TSHZ3;;chr18:19749386..19749404,+!p2@GATA6!0.68!5.77!GATA6;;chr2:66662281..66662308,+!p1@MEIS1!0.67!14.34!MEIS1;;chr2:19558373..19558392,-!p1@OSR1!0.67!11.24!OSR1;;chr8:72755987..72756002,-!p7@MSC!0.67!3.70!MSC;;chr11:65686802..65686818,+!p6@DRAP1!0.66!6.65!DRAP1;;chr1:170632477..170632506,+!p6@PRRX1!0.66!3.55!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!0.65!7.24!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.32!HMGA2;;chr15:42749722..42749739,-!p2@ZFP106!0.64!6.51!ZFP106;;chr1:158985493..158985535,+!p4@IFI16!0.64!5.47!IFI16;;chr1:221052840..221052875,+!p4@HLX!0.64!4.14!HLX;;chr14:62162258..62162269,+!p2@HIF1A!0.63!36.82!HIF1A;;chr1:59249688..59249703,-!p3@JUN!0.63!22.77!JUN;;chr8:72756213..72756243,-!p5@MSC!0.63!4.44!MSC;;chr7:28449015..28449024,+!p6@CREB5!0.63!3.25!CREB5;;chr8:25902876..25902936,-!p1@EBF2!0.63!3.25!EBF2;;chr13:45010939..45011033,-!p1@TSC22D1!0.62!248.10!TSC22D1;;chr3:114343768..114343822,-!p1@ZBTB20!0.62!16.26!ZBTB20;;chr2:66662895..66662907,+!p3@MEIS1!0.62!4.14!MEIS1;;chr1:158979792..158979814,+!p2@IFI16!0.61!35.19!IFI16;;chr1:158979872..158979898,+!p3@IFI16!0.61!10.94!IFI16;;chr17:46621937..46621966,-!p2@HOXB2!0.61!9.46!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.61!7.69!HOXB2;;chr2:66662396..66662407,+!p4@MEIS1!0.61!3.10!MEIS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.60!9.02!ZFPM2;;chr1:151032782..151032801,+!p4@MLLT11!0.60!6.65!MLLT11;;chr21:36260343..36260402,-!p6@RUNX1!0.60!5.17!RUNX1;;chr17:46622205..46622218,-!p3@HOXB2!0.60!3.55!HOXB2;;chr1:170632051..170632081,+!p16@PRRX1!0.60!2.96!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.59!22.03!SNAI2;;chr17:1959369..1959388,+!p2@HIC1!0.59!8.87!HIC1;;chr14:24837368..24837401,+!p1@NFATC4!0.59!7.84!NFATC4;;chr12:80085255..80085284,-!p9@PAWR!0.59!4.58!PAWR;;chr6:144329384..144329405,-!p1@PLAGL1!0.58!39.63!PLAGL1;;chr14:62162285..62162296,+!p3@HIF1A!0.58!17.59!HIF1A;;chr7:19157248..19157268,-!p1@TWIST1!0.58!9.02!TWIST1;;chr7:1577899..1577943,+!p3@MAFK!0.58!2.81!MAFK;;chr8:72756380..72756427,-!p8@MSC!0.58!2.81!MSC;;chr4:174451370..174451387,-!p1@HAND2!0.58!2.81!HAND2;;chr7:14029283..14029311,-!p1@ETV1!0.57!17.74!ETV1;;chr18:19749517..19749531,+!p3@GATA6!0.57!5.47!GATA6;;chr10:64134120..64134183,+!p1@ZNF365!0.57!3.40!ZNF365;;chr21:36260295..36260310,-!p3@RUNX1!0.56!4.73!RUNX1;;chr1:170632028..170632043,+!p20@PRRX1!0.56!2.66!PRRX1;;chr10:45495946..45495976,+!p2@ZNF22!0.56!2.66!ZNF22;;chr12:66218904..66218913,+!p11@HMGA2!0.56!2.66!HMGA2;;chr16:31076332..31076388,-!p3@ZNF668!0.56!2.66!ZNF668;;chr2:101436564..101436647,+!p1@NPAS2!0.55!65.06!NPAS2;;chr9:14314566..14314618,-!p1@NFIB!0.55!38.15!NFIB;;chr3:141087339..141087387,+!p2@ZBTB38!0.55!32.82!ZBTB38;;chr5:137804484..137804498,+!p2@EGR1!0.55!12.57!EGR1;;chr10:94449703..94449718,+!p1@HHEX!0.55!11.98!HHEX;;chr10:35484804..35484902,+!p2@CREM!0.55!11.83!CREM;;chr19:31840313..31840380,-!p1@TSHZ3!0.55!7.69!TSHZ3;;chr7:28448995..28449011,+!p4@CREB5!0.55!3.84!CREB5;;chr5:174151612..174151633,+!p2@MSX2!0.55!2.51!MSX2;;chr2:102091478..102091490,-!p3@RFX8!0.55!2.51!RFX8;;chr3:193853927..193853944,+!p1@HES1!0.54!101.72!HES1;;chr11:65687158..65687216,+!p4@DRAP1!0.54!17.59!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!0.54!9.17!TBX2;;chr3:168864315..168864339,-!p2@MECOM!0.54!4.58!MECOM;;chr3:101568349..101568365,+!p1@NFKBIZ!0.53!160.42!NFKBIZ;;chr7:44143978..44143989,+!p2@AEBP1!0.53!5.03!AEBP1;;chr2:192015701..192015743,-!p1@STAT4!0.53!3.55!STAT4;;chr11:125034586..125034604,+!p3@PKNOX2!0.53!2.37!PKNOX2;;chr17:41277372..41277418,-!p1@BRCA1!0.52!10.35!BRCA1;;chr1:151032833..151032850,+!p3@MLLT11!0.52!6.21!MLLT11;;chr1:158979851..158979865,+!p5@IFI16!0.52!6.06!IFI16;;chr12:26277817..26277863,-!p2@BHLHE41!0.52!3.40!BHLHE41;;chr17:46622229..46622257,-!p6@HOXB2!0.52!2.81!HOXB2;;chr17:46655730..46655791,-!p1@HOXB4!0.51!6.65!HOXB4;;chr12:66218573..66218596,+!p7@HMGA2!0.51!3.70!HMGA2;;chr3:168865194..168865245,-!p3@MECOM!0.51!3.10!MECOM;;chr3:141087562..141087594,+!p12@ZBTB38!0.51!2.22!ZBTB38;;chr3:193854202..193854232,+!p2@HES1!0.51!2.22!HES1;;chr5:142780237..142780261,-!p7@NR3C1!0.51!2.22!NR3C1;;chr16:86600426..86600441,+!p1@FOXC2!0.50!6.51!FOXC2;;chr17:46622440..46622477,-!p5@HOXB2!0.50!2.51!HOXB2;;chr9:4300050..4300118,-!p1@GLIS3!0.49!17.74!GLIS3;;chr9:14082760..14082775,-!p6@NFIB!0.49!3.99!NFIB;;chr3:141121847..141121868,+!p5@ZBTB38!0.49!3.55!ZBTB38;;chr2:66662510..66662521,+!p6@MEIS1!0.49!2.07!MEIS1;;chr7:28449026..28449037,+!p8@CREB5!0.49!2.07!CREB5;;chr1:170632439..170632465,+!p11@PRRX1!0.49!2.07!PRRX1;;chr2:66662249..66662267,+!p2@MEIS1!0.48!10.05!MEIS1;;chr14:62203595..62203676,+!p4@HIF1A!0.48!4.44!HIF1A;;chr7:137686763..137686784,-!p5@CREB3L2!0.48!4.14!CREB3L2;;chr1:151032922..151032951,+!p2@MLLT11!0.48!3.84!MLLT11;;chr12:66218378..66218401,+!p6@HMGA2!0.48!3.55!HMGA2;;chr17:59477275..59477286,+!p3@TBX2!0.48!2.96!TBX2;;chr10:63809106..63809127,+!p1@ARID5B!0.47!36.08!ARID5B;;chr15:57511609..57511651,+!p2@TCF12!0.47!3.84!TCF12;;chr17:41739283..41739297,-!p1@MEOX1!0.47!1.92!MEOX1;;chr1:170633245..170633256,+!p14@PRRX1!0.47!1.92!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.47!1.92!SIM2;;chr5:142780189..142780223,-!p6@NR3C1!0.47!1.92!NR3C1;;chr8:72756251..72756262,-!p12@MSC!0.47!1.92!MSC;;chrY:21906761..21906810,-!p2@KDM5D!0.47!1.92!KDM5D;;chr12:27485762..27485776,+!p3@ARNTL2!0.46!6.36!ARNTL2;;chr6:106534230..106534254,+!p2@PRDM1!0.46!5.91!PRDM1;;chr1:200379104..200379128,-!p2@ZNF281!0.46!5.77!ZNF281;;chr8:106330696..106330719,+!p2@ZFPM2!0.46!2.66!ZFPM2;;chr11:65687222..65687240,+!p7@DRAP1!0.46!2.66!DRAP1;;chr22:38598086..38598105,+!p1@MAFF!0.45!26.76!MAFF;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.45!11.09!TAL1;;chr4:146402843..146402864,+!p3@SMAD1!0.45!4.44!SMAD1;;chr9:16870710..16870763,-!p1@BNC2!0.45!3.70!BNC2;;chr19:31840438..31840470,-!p3@TSHZ3!0.45!2.51!TSHZ3;;chr8:77593474..77593612,+!p1@ZFHX4!0.44!10.05!ZFHX4;;chr5:321810..321877,+!p1@AHRR!0.44!7.39!AHRR;;chr9:14083467..14083483,-!p4@NFIB!0.44!5.47!NFIB;;chr9:14314522..14314556,-!p3@NFIB!0.44!5.17!NFIB;;chr11:6947720..6947812,+!p1@ZNF215!0.44!2.51!ZNF215;;chr12:66218443..66218461,+!p8@HMGA2!0.44!2.51!HMGA2;;chr12:72056773..72056796,+!p3@THAP2!0.44!2.51!THAP2;;chr1:158985469..158985489,+!p7@IFI16!0.44!2.22!IFI16;;chr1:221052994..221053008,+!p6@HLX!0.44!2.22!HLX;;chr5:137804130..137804156,+!p5@EGR1!0.44!1.92!EGR1;;chr19:54058073..54058088,+!p1@ZNF331!0.44!1.77!ZNF331;;chr1:119530493..119530572,-!p1@TBX15!0.44!1.77!TBX15;;chr1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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.83!66.98!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.82!65.06!SOX17;;chr1:170632285..170632309,+!p1@PRRX1!1.35!24.10!PRRX1;;chr3:141105705..141105770,+!p4@ZBTB38!1.32!24.10!ZBTB38;;chr8:11561684..11561751,+!p1@GATA4!1.29!18.63!GATA4;;chr20:6748325..6748352,+!p1@BMP2!1.27!25.43!BMP2;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.59!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.23!18.48!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!1.21!15.23!TBX20;;chr8:72756637..72756664,-!p3@MSC!1.19!16.41!MSC;;chr21:36260773..36260804,-!p7@RUNX1!1.18!18.93!RUNX1;;chr3:141087393..141087426,+!p3@ZBTB38!1.13!50.12!ZBTB38;;chr10:131762504..131762555,-!p1@EBF3!1.07!10.79!EBF3;;chr3:141087454..141087465,+!p19@ZBTB38!1.06!10.50!ZBTB38;;chr21:38071430..38071456,+!p1@SIM2!1.05!10.20!SIM2;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.20!KDM5D;;chr8:72756667..72756736,-!p2@MSC!0.99!13.75!MSC;;chrY:2803415..2803468,+!p1@ZFY!0.99!8.72!ZFY;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.51!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.21!HMGA2;;chr14:29234581..29234601,+!p2@FOXG1!0.98!8.58!FOXG1;;chr2:102091144..102091183,-!p2@RFX8!0.98!8.58!RFX8;;chr8:72756267..72756296,-!p4@MSC!0.96!12.12!MSC;;chr11:125034640..125034655,+!p1@PKNOX2!0.92!7.39!PKNOX2;;chr4:174450089..174450153,-!p2@HAND2!0.91!7.10!HAND2;;chr12:52445218..52445237,+!p1@NR4A1!0.88!87.68!NR4A1;;chr2:239756671..239756732,+!p1@TWIST2!0.88!22.18!TWIST2;;chr18:19749541..19749557,+!p1@GATA6!0.88!21.88!GATA6;;chr1:170632959..170632987,+!p4@PRRX1!0.88!7.24!PRRX1;;chr19:42636586..42636607,-!p1@POU2F2!0.87!18.78!POU2F2;;chr11:46299199..46299233,+!p1@CREB3L1!0.86!34.15!CREB3L1;;chr20:50179368..50179392,-!p2@NFATC2!0.86!8.28!NFATC2;;chr14:29236269..29236285,+!p3@FOXG1!0.86!6.21!FOXG1;;chr9:16705069..16705086,-!p3@BNC2!0.86!6.21!BNC2;;chr8:72756063..72756125,-!p1@MSC!0.85!12.86!MSC;;chr2:102091566..102091581,-!p1@RFX8!0.85!6.06!RFX8;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.06!PRRX1;;chr3:157823517..157823562,-!p1@SHOX2!0.84!6.36!SHOX2;;chr14:29235961..29236008,+!p1@FOXG1!0.84!5.91!FOXG1;;chr1:151032860..151032918,+!p1@MLLT11!0.81!70.08!MLLT11;;chr2:239756739..239756755,+!p2@TWIST2!0.79!9.31!TWIST2;;chr11:65686732..65686756,+!p2@DRAP1!0.77!22.33!DRAP1;;chr12:66218836..66218888,+!p1@HMGA2!0.76!48.64!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.76!5.91!TBX18;;chr1:170632137..170632172,+!p10@PRRX1!0.76!4.73!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.76!4.73!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.75!10.20!EGR2;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.28!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!0.75!4.58!PRRX1;;chr10:35484053..35484076,+!p1@CREM!0.74!12.27!CREM;;chr15:83953397..83953425,-!p1@BNC1!0.74!5.32!BNC1;;chr19:45971246..45971265,+!p1@FOSB!0.72!89.30!FOSB;;chr11:65687362..65687436,+!p3@DRAP1!0.72!21.44!DRAP1;;chr7:28448965..28448994,+!p2@CREB5!0.72!16.56!CREB5;;chr18:53068911..53068935,-!p4@TCF4!0.72!4.88!TCF4;;chr1:170632647..170632659,+!p17@PRRX1!0.72!4.29!PRRX1;;chr11:34642612..34642646,+!p1@EHF!0.71!4.14!EHF;;chr7:44143925..44143970,+!p1@AEBP1!0.70!102.61!AEBP1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.70!55.74!ZC3H12A;;chr1:221052776..221052799,+!p1@HLX!0.70!7.84!HLX;;chr11:125034605..125034636,+!p2@PKNOX2!0.70!3.99!PKNOX2;;chr6:106534192..106534224,+!p1@PRDM1!0.69!12.12!PRDM1;;chr8:77593750..77593757,+!p3@ZFHX4!0.69!3.84!ZFHX4;;chr19:46801639..46801699,+!p1@HIF3A!0.69!3.84!HIF3A;;chr1:170632115..170632136,+!p9@PRRX1!0.69!3.84!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.68!10.65!TWIST1;;chr19:31840130..31840160,-!p2@TSHZ3!0.68!6.21!TSHZ3;;chr18:19749386..19749404,+!p2@GATA6!0.68!5.77!GATA6;;chr2:66662281..66662308,+!p1@MEIS1!0.67!14.34!MEIS1;;chr2:19558373..19558392,-!p1@OSR1!0.67!11.24!OSR1;;chr8:72755987..72756002,-!p7@MSC!0.67!3.70!MSC;;chr11:65686802..65686818,+!p6@DRAP1!0.66!6.65!DRAP1;;chr1:170632477..170632506,+!p6@PRRX1!0.66!3.55!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!0.65!7.24!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.32!HMGA2;;chr15:42749722..42749739,-!p2@ZFP106!0.64!6.51!ZFP106;;chr1:158985493..158985535,+!p4@IFI16!0.64!5.47!IFI16;;chr1:221052840..221052875,+!p4@HLX!0.64!4.14!HLX;;chr14:62162258..62162269,+!p2@HIF1A!0.63!36.82!HIF1A;;chr1:59249688..59249703,-!p3@JUN!0.63!22.77!JUN;;chr8:72756213..72756243,-!p5@MSC!0.63!4.44!MSC;;chr7:28449015..28449024,+!p6@CREB5!0.63!3.25!CREB5;;chr8:25902876..25902936,-!p1@EBF2!0.63!3.25!EBF2;;chr13:45010939..45011033,-!p1@TSC22D1!0.62!248.10!TSC22D1;;chr3:114343768..114343822,-!p1@ZBTB20!0.62!16.26!ZBTB20;;chr2:66662895..66662907,+!p3@MEIS1!0.62!4.14!MEIS1;;chr1:158979792..158979814,+!p2@IFI16!0.61!35.19!IFI16;;chr1:158979872..158979898,+!p3@IFI16!0.61!10.94!IFI16;;chr17:46621937..46621966,-!p2@HOXB2!0.61!9.46!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.61!7.69!HOXB2;;chr2:66662396..66662407,+!p4@MEIS1!0.61!3.10!MEIS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.60!9.02!ZFPM2;;chr1:151032782..151032801,+!p4@MLLT11!0.60!6.65!MLLT11;;chr21:36260343..36260402,-!p6@RUNX1!0.60!5.17!RUNX1;;chr17:46622205..46622218,-!p3@HOXB2!0.60!3.55!HOXB2;;chr1:170632051..170632081,+!p16@PRRX1!0.60!2.96!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.59!22.03!SNAI2;;chr17:1959369..1959388,+!p2@HIC1!0.59!8.87!HIC1;;chr14:24837368..24837401,+!p1@NFATC4!0.59!7.84!NFATC4;;chr12:80085255..80085284,-!p9@PAWR!0.59!4.58!PAWR;;chr6:144329384..144329405,-!p1@PLAGL1!0.58!39.63!PLAGL1;;chr14:62162285..62162296,+!p3@HIF1A!0.58!17.59!HIF1A;;chr7:19157248..19157268,-!p1@TWIST1!0.58!9.02!TWIST1;;chr7:1577899..1577943,+!p3@MAFK!0.58!2.81!MAFK;;chr8:72756380..72756427,-!p8@MSC!0.58!2.81!MSC;;chr4:174451370..174451387,-!p1@HAND2!0.58!2.81!HAND2;;chr7:14029283..14029311,-!p1@ETV1!0.57!17.74!ETV1;;chr18:19749517..19749531,+!p3@GATA6!0.57!5.47!GATA6;;chr10:64134120..64134183,+!p1@ZNF365!0.57!3.40!ZNF365;;chr21:36260295..36260310,-!p3@RUNX1!0.56!4.73!RUNX1;;chr1:170632028..170632043,+!p20@PRRX1!0.56!2.66!PRRX1;;chr10:45495946..45495976,+!p2@ZNF22!0.56!2.66!ZNF22;;chr12:66218904..66218913,+!p11@HMGA2!0.56!2.66!HMGA2;;chr16:31076332..31076388,-!p3@ZNF668!0.56!2.66!ZNF668;;chr2:101436564..101436647,+!p1@NPAS2!0.55!65.06!NPAS2;;chr9:14314566..14314618,-!p1@NFIB!0.55!38.15!NFIB;;chr3:141087339..141087387,+!p2@ZBTB38!0.55!32.82!ZBTB38;;chr5:137804484..137804498,+!p2@EGR1!0.55!12.57!EGR1;;chr10:94449703..94449718,+!p1@HHEX!0.55!11.98!HHEX;;chr10:35484804..35484902,+!p2@CREM!0.55!11.83!CREM;;chr19:31840313..31840380,-!p1@TSHZ3!0.55!7.69!TSHZ3;;chr7:28448995..28449011,+!p4@CREB5!0.55!3.84!CREB5;;chr5:174151612..174151633,+!p2@MSX2!0.55!2.51!MSX2;;chr2:102091478..102091490,-!p3@RFX8!0.55!2.51!RFX8;;chr3:193853927..193853944,+!p1@HES1!0.54!101.72!HES1;;chr11:65687158..65687216,+!p4@DRAP1!0.54!17.59!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!0.54!9.17!TBX2;;chr3:168864315..168864339,-!p2@MECOM!0.54!4.58!MECOM;;chr3:101568349..101568365,+!p1@NFKBIZ!0.53!160.42!NFKBIZ;;chr7:44143978..44143989,+!p2@AEBP1!0.53!5.03!AEBP1;;chr2:192015701..192015743,-!p1@STAT4!0.53!3.55!STAT4;;chr11:125034586..125034604,+!p3@PKNOX2!0.53!2.37!PKNOX2;;chr17:41277372..41277418,-!p1@BRCA1!0.52!10.35!BRCA1;;chr1:151032833..151032850,+!p3@MLLT11!0.52!6.21!MLLT11;;chr1:158979851..158979865,+!p5@IFI16!0.52!6.06!IFI16;;chr12:26277817..26277863,-!p2@BHLHE41!0.52!3.40!BHLHE41;;chr17:46622229..46622257,-!p6@HOXB2!0.52!2.81!HOXB2;;chr17:46655730..46655791,-!p1@HOXB4!0.51!6.65!HOXB4;;chr12:66218573..66218596,+!p7@HMGA2!0.51!3.70!HMGA2;;chr3:168865194..168865245,-!p3@MECOM!0.51!3.10!MECOM;;chr3:141087562..141087594,+!p12@ZBTB38!0.51!2.22!ZBTB38;;chr3:193854202..193854232,+!p2@HES1!0.51!2.22!HES1;;chr5:142780237..142780261,-!p7@NR3C1!0.51!2.22!NR3C1;;chr16:86600426..86600441,+!p1@FOXC2!0.50!6.51!FOXC2;;chr17:46622440..46622477,-!p5@HOXB2!0.50!2.51!HOXB2;;chr9:4300050..4300118,-!p1@GLIS3!0.49!17.74!GLIS3;;chr9:14082760..14082775,-!p6@NFIB!0.49!3.99!NFIB;;chr3:141121847..141121868,+!p5@ZBTB38!0.49!3.55!ZBTB38;;chr2:66662510..66662521,+!p6@MEIS1!0.49!2.07!MEIS1;;chr7:28449026..28449037,+!p8@CREB5!0.49!2.07!CREB5;;chr1:170632439..170632465,+!p11@PRRX1!0.49!2.07!PRRX1;;chr2:66662249..66662267,+!p2@MEIS1!0.48!10.05!MEIS1;;chr14:62203595..62203676,+!p4@HIF1A!0.48!4.44!HIF1A;;chr7:137686763..137686784,-!p5@CREB3L2!0.48!4.14!CREB3L2;;chr1:151032922..151032951,+!p2@MLLT11!0.48!3.84!MLLT11;;chr12:66218378..66218401,+!p6@HMGA2!0.48!3.55!HMGA2;;chr17:59477275..59477286,+!p3@TBX2!0.48!2.96!TBX2;;chr10:63809106..63809127,+!p1@ARID5B!0.47!36.08!ARID5B;;chr15:57511609..57511651,+!p2@TCF12!0.47!3.84!TCF12;;chr17:41739283..41739297,-!p1@MEOX1!0.47!1.92!MEOX1;;chr1:170633245..170633256,+!p14@PRRX1!0.47!1.92!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.47!1.92!SIM2;;chr5:142780189..142780223,-!p6@NR3C1!0.47!1.92!NR3C1;;chr8:72756251..72756262,-!p12@MSC!0.47!1.92!MSC;;chrY:21906761..21906810,-!p2@KDM5D!0.47!1.92!KDM5D;;chr12:27485762..27485776,+!p3@ARNTL2!0.46!6.36!ARNTL2;;chr6:106534230..106534254,+!p2@PRDM1!0.46!5.91!PRDM1;;chr1:200379104..200379128,-!p2@ZNF281!0.46!5.77!ZNF281;;chr8:106330696..106330719,+!p2@ZFPM2!0.46!2.66!ZFPM2;;chr11:65687222..65687240,+!p7@DRAP1!0.46!2.66!DRAP1;;chr22:38598086..38598105,+!p1@MAFF!0.45!26.76!MAFF;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.45!11.09!TAL1;;chr4:146402843..146402864,+!p3@SMAD1!0.45!4.44!SMAD1;;chr9:16870710..16870763,-!p1@BNC2!0.45!3.70!BNC2;;chr19:31840438..31840470,-!p3@TSHZ3!0.45!2.51!TSHZ3;;chr8:77593474..77593612,+!p1@ZFHX4!0.44!10.05!ZFHX4;;chr5:321810..321877,+!p1@AHRR!0.44!7.39!AHRR;;chr9:14083467..14083483,-!p4@NFIB!0.44!5.47!NFIB;;chr9:14314522..14314556,-!p3@NFIB!0.44!5.17!NFIB;;chr11:6947720..6947812,+!p1@ZNF215!0.44!2.51!ZNF215;;chr12:66218443..66218461,+!p8@HMGA2!0.44!2.51!HMGA2;;chr12:72056773..72056796,+!p3@THAP2!0.44!2.51!THAP2;;chr1:158985469..158985489,+!p7@IFI16!0.44!2.22!IFI16;;chr1:221052994..221053008,+!p6@HLX!0.44!2.22!HLX;;chr5:137804130..137804156,+!p5@EGR1!0.44!1.92!EGR1;;chr19:54058073..54058088,+!p1@ZNF331!0.44!1.77!ZNF331;;chr1:119530493..119530572,-!p1@TBX15!0.44!1.77!TBX15;;chr1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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000011,CL:0000221 | |ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000011,CL:0000221 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor4.CNhs12371.11755-123G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor4.CNhs12371.11755-123G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor4.CNhs12371.11755-123G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor4.CNhs12371.11755-123G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor4.CNhs12371.11755-123G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11755-123G9 | |id=FF:11755-123G9 | ||
|is_a=EFO:0002091;;FF:0000271 | |is_a=EFO:0002091;;FF:0000271 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12371 | |||
|library_id_phase_based=2:CNhs12371 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11755 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11755 | |||
|name=mesenchymal precursor cell - cardiac, donor4 | |name=mesenchymal precursor cell - cardiac, donor4 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12371,LSID914,release011,COMPLETED | |profile_hcage=CNhs12371,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=123 | |rna_box=123 | ||
Line 62: | Line 79: | ||
|rna_weight_ug=40.28625 | |rna_weight_ug=40.28625 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 83: | Line 101: | ||
|top_motifs=ALX4:2.13818664533;HSF1,2:1.78439012774;EN1,2:1.7317158995;ALX1:1.46088461204;PAX1,9:1.40805421827;NKX3-1:1.36027109366;ZNF238:1.21407079847;FOX{I1,J2}:1.16169432168;POU3F1..4:1.13776454604;CDC5L:1.12746615123;NFATC1..3:1.019540064;EVI1:0.978100350101;HOX{A5,B5}:0.95841886933;IKZF1:0.89231523527;TAL1_TCF{3,4,12}:0.890728206572;MYBL2:0.866980484848;CRX:0.847343350179;HMX1:0.826431231141;UFEwm:0.807957072075;HOX{A4,D4}:0.800296039158;KLF4:0.755131765736;GATA4:0.751440215525;FOXL1:0.737807660522;NFE2L2:0.734140198048;ONECUT1,2:0.732579186814;NKX2-2,8:0.731430313449;ZNF384:0.691279491274;TBP:0.64107942101;NR3C1:0.616474993737;XBP1:0.613627163297;HBP1_HMGB_SSRP1_UBTF:0.566936746775;AIRE:0.558014313021;ELK1,4_GABP{A,B1}:0.554567070714;ARID5B:0.536462958989;PBX1:0.532961149169;NFIX:0.530471620363;ATF6:0.51246896263;TLX2:0.50899135929;FOS_FOS{B,L1}_JUN{B,D}:0.496895549155;CDX1,2,4:0.489598741137;BACH2:0.48774682989;JUN:0.480974381619;E2F1..5:0.476272153714;PAX8:0.471344610646;XCPE1{core}:0.464396865756;HLF:0.447640291165;GTF2A1,2:0.446263835312;EBF1:0.441174160801;TLX1..3_NFIC{dimer}:0.429997214551;MYB:0.416708643052;GFI1B:0.41175604599;TEAD1:0.411651970633;ZBTB6:0.411138140072;TFDP1:0.397267424829;NANOG{mouse}:0.394931895227;TBX4,5:0.385855193146;MAFB:0.366450060677;NKX2-1,4:0.356786245645;FOXM1:0.350266761768;PRDM1:0.348070936529;SMAD1..7,9:0.34347692631;HMGA1,2:0.333261315264;GFI1:0.327933470692;DBP:0.320350312792;PAX5:0.310907402949;POU1F1:0.286239916733;NFE2L1:0.282720188674;POU5F1:0.282640892197;SRF:0.273128384677;ZIC1..3:0.271709547507;bHLH_family:0.241981826923;RXR{A,B,G}:0.230770882944;ESRRA:0.226404833822;GTF2I:0.198498537144;TP53:0.196751028373;FOSL2:0.188696284463;GZF1:0.176547893364;NKX3-2:0.176198369581;LHX3,4:0.175902045098;PAX3,7:0.167561139133;SOX{8,9,10}:0.164356757609;BPTF:0.162760628913;HIF1A:0.157609256324;HES1:0.153841006517;ELF1,2,4:0.146029093673;ZBTB16:0.129161858991;RFX1:0.126627356771;NFE2:0.123320130775;ZNF143:0.119738051123;NRF1:0.114479495792;FOXP3:0.111947220141;PAX4:0.101828173547;MEF2{A,B,C,D}:0.0997639157801;STAT2,4,6:0.0934247251217;GCM1,2:0.0698112746331;HNF1A:0.0604592445145;POU2F1..3:0.054778994567;NFKB1_REL_RELA:0.0303945114617;HAND1,2:0.0149862929403;ATF2:0.0146074967456;TFCP2:0.00689615653057;MAZ:0.00457037063156;MZF1:0.0028612078253;CREB1:-0.0176822507205;SOX17:-0.0307773137429;PAX2:-0.0319758068462;PRRX1,2:-0.0330708335459;CEBPA,B_DDIT3:-0.0395099439466;MTE{core}:-0.0406489211448;TFAP2B:-0.0411051903432;GLI1..3:-0.0588597399139;TFAP4:-0.065371436196;RUNX1..3:-0.0741023159523;LEF1_TCF7_TCF7L1,2:-0.0824070781557;AHR_ARNT_ARNT2:-0.108747040238;SPZ1:-0.112427939504;SOX2:-0.11487957306;NHLH1,2:-0.123700922691;SOX5:-0.131949397453;ATF5_CREB3:-0.132139651022;TEF:-0.137924131817;PPARG:-0.142208531794;ESR1:-0.153527985496;IKZF2:-0.162295949664;POU6F1:-0.17855981371;AR:-0.186998157916;ZFP161:-0.19101757969;YY1:-0.209449767254;NFIL3:-0.211592170227;MYFfamily:-0.216140576507;NFY{A,B,C}:-0.226085635541;ETS1,2:-0.226430252947;IRF1,2:-0.22754891315;STAT1,3:-0.231392299623;SPI1:-0.234502479662;SREBF1,2:-0.23948937801;PATZ1:-0.269321184266;MED-1{core}:-0.273295725352;REST:-0.276914725122;RXRA_VDR{dimer}:-0.285769478919;RBPJ:-0.296368779065;MTF1:-0.302061142239;ZNF148:-0.317876208317;TGIF1:-0.329976546136;HIC1:-0.330158956618;GATA6:-0.336888469448;SPIB:-0.35200723147;PAX6:-0.3646995377;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.375155482098;HNF4A_NR2F1,2:-0.385458137775;NKX6-1,2:-0.387331748234;FOXD3:-0.3936973497;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.399994218916;HOXA9_MEIS1:-0.410201204013;TFAP2{A,C}:-0.424788890466;NR6A1:-0.425671935216;LMO2:-0.428368558363;DMAP1_NCOR{1,2}_SMARC:-0.431055280721;ZNF423:-0.434214227504;NR1H4:-0.436938495163;RFX2..5_RFXANK_RFXAP:-0.451972590811;EGR1..3:-0.472131896146;FOXN1:-0.476278711915;IRF7:-0.476480772735;FOXQ1:-0.490518138374;ATF4:-0.497914513195;SP1:-0.556266706624;FOXP1:-0.583108450343;CUX2:-0.605607082932;EP300:-0.633093707319;PDX1:-0.63613931936;NR5A1,2:-0.657002308484;NKX2-3_NKX2-5:-0.682350904411;STAT5{A,B}:-0.692860670799;TOPORS:-0.756249324717;ADNP_IRX_SIX_ZHX:-0.763693358502;FOX{D1,D2}:-0.795490037159;VSX1,2:-0.801447298692;HOX{A6,A7,B6,B7}:-0.806352628265;FOXO1,3,4:-0.82280862049;OCT4_SOX2{dimer}:-0.830191343323;FOX{F1,F2,J1}:-0.8313683296;SNAI1..3:-0.838717729781;RREB1:-0.846275301286;BREu{core}:-0.867810044703;RORA:-0.886526481813;ZEB1:-0.890330955769;NANOG:-0.898304096963;FOXA2:-1.00789945651;MYOD1:-1.1376008977;PITX1..3:-1.20622601927;T:-1.52124557986 | |top_motifs=ALX4:2.13818664533;HSF1,2:1.78439012774;EN1,2:1.7317158995;ALX1:1.46088461204;PAX1,9:1.40805421827;NKX3-1:1.36027109366;ZNF238:1.21407079847;FOX{I1,J2}:1.16169432168;POU3F1..4:1.13776454604;CDC5L:1.12746615123;NFATC1..3:1.019540064;EVI1:0.978100350101;HOX{A5,B5}:0.95841886933;IKZF1:0.89231523527;TAL1_TCF{3,4,12}:0.890728206572;MYBL2:0.866980484848;CRX:0.847343350179;HMX1:0.826431231141;UFEwm:0.807957072075;HOX{A4,D4}:0.800296039158;KLF4:0.755131765736;GATA4:0.751440215525;FOXL1:0.737807660522;NFE2L2:0.734140198048;ONECUT1,2:0.732579186814;NKX2-2,8:0.731430313449;ZNF384:0.691279491274;TBP:0.64107942101;NR3C1:0.616474993737;XBP1:0.613627163297;HBP1_HMGB_SSRP1_UBTF:0.566936746775;AIRE:0.558014313021;ELK1,4_GABP{A,B1}:0.554567070714;ARID5B:0.536462958989;PBX1:0.532961149169;NFIX:0.530471620363;ATF6:0.51246896263;TLX2:0.50899135929;FOS_FOS{B,L1}_JUN{B,D}:0.496895549155;CDX1,2,4:0.489598741137;BACH2:0.48774682989;JUN:0.480974381619;E2F1..5:0.476272153714;PAX8:0.471344610646;XCPE1{core}:0.464396865756;HLF:0.447640291165;GTF2A1,2:0.446263835312;EBF1:0.441174160801;TLX1..3_NFIC{dimer}:0.429997214551;MYB:0.416708643052;GFI1B:0.41175604599;TEAD1:0.411651970633;ZBTB6:0.411138140072;TFDP1:0.397267424829;NANOG{mouse}:0.394931895227;TBX4,5:0.385855193146;MAFB:0.366450060677;NKX2-1,4:0.356786245645;FOXM1:0.350266761768;PRDM1:0.348070936529;SMAD1..7,9:0.34347692631;HMGA1,2:0.333261315264;GFI1:0.327933470692;DBP:0.320350312792;PAX5:0.310907402949;POU1F1:0.286239916733;NFE2L1:0.282720188674;POU5F1:0.282640892197;SRF:0.273128384677;ZIC1..3:0.271709547507;bHLH_family:0.241981826923;RXR{A,B,G}:0.230770882944;ESRRA:0.226404833822;GTF2I:0.198498537144;TP53:0.196751028373;FOSL2:0.188696284463;GZF1:0.176547893364;NKX3-2:0.176198369581;LHX3,4:0.175902045098;PAX3,7:0.167561139133;SOX{8,9,10}:0.164356757609;BPTF:0.162760628913;HIF1A:0.157609256324;HES1:0.153841006517;ELF1,2,4:0.146029093673;ZBTB16:0.129161858991;RFX1:0.126627356771;NFE2:0.123320130775;ZNF143:0.119738051123;NRF1:0.114479495792;FOXP3:0.111947220141;PAX4:0.101828173547;MEF2{A,B,C,D}:0.0997639157801;STAT2,4,6:0.0934247251217;GCM1,2:0.0698112746331;HNF1A:0.0604592445145;POU2F1..3:0.054778994567;NFKB1_REL_RELA:0.0303945114617;HAND1,2:0.0149862929403;ATF2:0.0146074967456;TFCP2:0.00689615653057;MAZ:0.00457037063156;MZF1:0.0028612078253;CREB1:-0.0176822507205;SOX17:-0.0307773137429;PAX2:-0.0319758068462;PRRX1,2:-0.0330708335459;CEBPA,B_DDIT3:-0.0395099439466;MTE{core}:-0.0406489211448;TFAP2B:-0.0411051903432;GLI1..3:-0.0588597399139;TFAP4:-0.065371436196;RUNX1..3:-0.0741023159523;LEF1_TCF7_TCF7L1,2:-0.0824070781557;AHR_ARNT_ARNT2:-0.108747040238;SPZ1:-0.112427939504;SOX2:-0.11487957306;NHLH1,2:-0.123700922691;SOX5:-0.131949397453;ATF5_CREB3:-0.132139651022;TEF:-0.137924131817;PPARG:-0.142208531794;ESR1:-0.153527985496;IKZF2:-0.162295949664;POU6F1:-0.17855981371;AR:-0.186998157916;ZFP161:-0.19101757969;YY1:-0.209449767254;NFIL3:-0.211592170227;MYFfamily:-0.216140576507;NFY{A,B,C}:-0.226085635541;ETS1,2:-0.226430252947;IRF1,2:-0.22754891315;STAT1,3:-0.231392299623;SPI1:-0.234502479662;SREBF1,2:-0.23948937801;PATZ1:-0.269321184266;MED-1{core}:-0.273295725352;REST:-0.276914725122;RXRA_VDR{dimer}:-0.285769478919;RBPJ:-0.296368779065;MTF1:-0.302061142239;ZNF148:-0.317876208317;TGIF1:-0.329976546136;HIC1:-0.330158956618;GATA6:-0.336888469448;SPIB:-0.35200723147;PAX6:-0.3646995377;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.375155482098;HNF4A_NR2F1,2:-0.385458137775;NKX6-1,2:-0.387331748234;FOXD3:-0.3936973497;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.399994218916;HOXA9_MEIS1:-0.410201204013;TFAP2{A,C}:-0.424788890466;NR6A1:-0.425671935216;LMO2:-0.428368558363;DMAP1_NCOR{1,2}_SMARC:-0.431055280721;ZNF423:-0.434214227504;NR1H4:-0.436938495163;RFX2..5_RFXANK_RFXAP:-0.451972590811;EGR1..3:-0.472131896146;FOXN1:-0.476278711915;IRF7:-0.476480772735;FOXQ1:-0.490518138374;ATF4:-0.497914513195;SP1:-0.556266706624;FOXP1:-0.583108450343;CUX2:-0.605607082932;EP300:-0.633093707319;PDX1:-0.63613931936;NR5A1,2:-0.657002308484;NKX2-3_NKX2-5:-0.682350904411;STAT5{A,B}:-0.692860670799;TOPORS:-0.756249324717;ADNP_IRX_SIX_ZHX:-0.763693358502;FOX{D1,D2}:-0.795490037159;VSX1,2:-0.801447298692;HOX{A6,A7,B6,B7}:-0.806352628265;FOXO1,3,4:-0.82280862049;OCT4_SOX2{dimer}:-0.830191343323;FOX{F1,F2,J1}:-0.8313683296;SNAI1..3:-0.838717729781;RREB1:-0.846275301286;BREu{core}:-0.867810044703;RORA:-0.886526481813;ZEB1:-0.890330955769;NANOG:-0.898304096963;FOXA2:-1.00789945651;MYOD1:-1.1376008977;PITX1..3:-1.20622601927;T:-1.52124557986 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11755-123G9;search_select_hide=table117:FF:11755-123G9 | |||
}} | }} |
Latest revision as of 18:18, 4 June 2020
Name: | mesenchymal precursor cell - cardiac, donor4 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12371 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12371
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12371
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.754 |
10 | 10 | 0.246 |
100 | 100 | 0.763 |
101 | 101 | 0.501 |
102 | 102 | 0.445 |
103 | 103 | 0.121 |
104 | 104 | 0.898 |
105 | 105 | 0.153 |
106 | 106 | 0.769 |
107 | 107 | 0.361 |
108 | 108 | 0.405 |
109 | 109 | 0.637 |
11 | 11 | 0.651 |
110 | 110 | 0.15 |
111 | 111 | 0.196 |
112 | 112 | 0.879 |
113 | 113 | 0.00394 |
114 | 114 | 0.768 |
115 | 115 | 0.444 |
116 | 116 | 0.0705 |
117 | 117 | 0.336 |
118 | 118 | 0.471 |
119 | 119 | 0.956 |
12 | 12 | 0.583 |
120 | 120 | 0.133 |
121 | 121 | 0.924 |
122 | 122 | 0.354 |
123 | 123 | 1.3611e-4 |
124 | 124 | 0.0635 |
125 | 125 | 0.287 |
126 | 126 | 0.55 |
127 | 127 | 0.616 |
128 | 128 | 0.945 |
129 | 129 | 0.328 |
13 | 13 | 0.49 |
130 | 130 | 0.208 |
131 | 131 | 0.0696 |
132 | 132 | 0.705 |
133 | 133 | 0.632 |
134 | 134 | 0.438 |
135 | 135 | 0.45 |
136 | 136 | 0.766 |
137 | 137 | 0.985 |
138 | 138 | 0.952 |
139 | 139 | 0.297 |
14 | 14 | 0.2 |
140 | 140 | 0.92 |
141 | 141 | 0.92 |
142 | 142 | 0.435 |
143 | 143 | 0.191 |
144 | 144 | 0.463 |
145 | 145 | 0.761 |
146 | 146 | 0.763 |
147 | 147 | 0.0633 |
148 | 148 | 0.483 |
149 | 149 | 0.83 |
15 | 15 | 0.643 |
150 | 150 | 0.0125 |
151 | 151 | 0.154 |
152 | 152 | 0.453 |
153 | 153 | 0.479 |
154 | 154 | 0.503 |
155 | 155 | 0.00586 |
156 | 156 | 0.345 |
157 | 157 | 0.461 |
158 | 158 | 0.0117 |
159 | 159 | 0.0689 |
16 | 16 | 0.187 |
160 | 160 | 0.797 |
161 | 161 | 0.0295 |
162 | 162 | 0.495 |
163 | 163 | 0.289 |
164 | 164 | 0.094 |
165 | 165 | 0.61 |
166 | 166 | 0.324 |
167 | 167 | 0.532 |
168 | 168 | 0.434 |
169 | 169 | 0.418 |
17 | 17 | 0.912 |
18 | 18 | 0.119 |
19 | 19 | 0.284 |
2 | 2 | 0.958 |
20 | 20 | 0.844 |
21 | 21 | 0.943 |
22 | 22 | 0.987 |
23 | 23 | 0.211 |
24 | 24 | 0.498 |
25 | 25 | 0.159 |
26 | 26 | 0.47 |
27 | 27 | 0.463 |
28 | 28 | 0.483 |
29 | 29 | 0.0615 |
3 | 3 | 0.477 |
30 | 30 | 0.963 |
31 | 31 | 0.788 |
32 | 32 | 0.0018 |
33 | 33 | 0.273 |
34 | 34 | 0.649 |
35 | 35 | 0.625 |
36 | 36 | 0.492 |
37 | 37 | 0.11 |
38 | 38 | 0.438 |
39 | 39 | 0.311 |
4 | 4 | 0.271 |
40 | 40 | 0.33 |
41 | 41 | 0.923 |
42 | 42 | 0.972 |
43 | 43 | 0.677 |
44 | 44 | 0.505 |
45 | 45 | 0.574 |
46 | 46 | 0.547 |
47 | 47 | 0.94 |
48 | 48 | 0.707 |
49 | 49 | 0.0385 |
5 | 5 | 0.854 |
50 | 50 | 0.841 |
51 | 51 | 0.707 |
52 | 52 | 0.411 |
53 | 53 | 0.0162 |
54 | 54 | 0.753 |
55 | 55 | 0.389 |
56 | 56 | 0.207 |
57 | 57 | 0.974 |
58 | 58 | 0.17 |
59 | 59 | 0.96 |
6 | 6 | 0.289 |
60 | 60 | 0.576 |
61 | 61 | 0.474 |
62 | 62 | 0.559 |
63 | 63 | 0.996 |
64 | 64 | 0.533 |
65 | 65 | 0.991 |
66 | 66 | 0.643 |
67 | 67 | 0.609 |
68 | 68 | 0.766 |
69 | 69 | 0.352 |
7 | 7 | 0.321 |
70 | 70 | 0.138 |
71 | 71 | 0.591 |
72 | 72 | 0.95 |
73 | 73 | 0.0689 |
74 | 74 | 0.124 |
75 | 75 | 0.644 |
76 | 76 | 0.235 |
77 | 77 | 0.102 |
78 | 78 | 0.154 |
79 | 79 | 0.164 |
8 | 8 | 0.449 |
80 | 80 | 0.606 |
81 | 81 | 0.975 |
82 | 82 | 0.0932 |
83 | 83 | 0.891 |
84 | 84 | 0.787 |
85 | 85 | 0.435 |
86 | 86 | 0.351 |
87 | 87 | 0.0267 |
88 | 88 | 0.556 |
89 | 89 | 0.0684 |
9 | 9 | 0.612 |
90 | 90 | 0.244 |
91 | 91 | 0.596 |
92 | 92 | 0.852 |
93 | 93 | 0.511 |
94 | 94 | 0.907 |
95 | 95 | 0.134 |
96 | 96 | 0.821 |
97 | 97 | 0.418 |
98 | 98 | 0.111 |
99 | 99 | 0.106 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12371
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000271 human cardiac mesenchymal precursor cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000034 (stem cell)
0000569 (cardiac mesenchymal cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000271 (human cardiac mesenchymal precursor cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000011 (migratory trunk neural crest cell)
CL:0000221 (ectodermal cell)