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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004788
|accession_numbers=CAGE;DRX008567;DRR009439;DRZ000864;DRZ002249;DRZ012214;DRZ013599
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002118,UBERON:0003100,UBERON:0000474
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002118,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:176969228..176969260,+!p1@HOXD11!1.29!18.31!HOXD11;;chr2:19558373..19558392,-!p1@OSR1!1.26!46.18!OSR1;;chr8:55370487..55370503,+!p1@SOX17!1.21!15.13!SOX17;;chr15:96869255..96869291,+!p6@NR2F2!1.20!26.67!NR2F2;;chr11:46299199..46299233,+!p1@CREB3L1!1.17!71.26!CREB3L1;;chr2:176969179..176969226,+!p2@HOXD11!1.15!13.14!HOXD11;;chr3:25470156..25470227,+!p2@RARB!1.14!12.74!RARB;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.14!12.74!HOXC5;;chr3:25469724..25469773,+!p1@RARB!1.13!17.91!RARB;;chr19:46801639..46801699,+!p1@HIF3A!1.13!12.34!HIF3A;;chr15:96869222..96869251,+!p18@NR2F2!1.11!13.93!NR2F2;;chr3:141087393..141087426,+!p3@ZBTB38!1.10!45.78!ZBTB38;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.65!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!1.08!29.06!ZFPM2;;chr12:66218598..66218645,+!p2@HMGA2!1.07!50.16!HMGA2;;chr7:27224842..27224872,-!p1@HOXA11!1.06!10.35!HOXA11;;chr19:42636586..42636607,-!p1@POU2F2!1.05!28.26!POU2F2;;chr14:62162285..62162296,+!p3@HIF1A!1.04!52.55!HIF1A;;chr7:1577899..1577943,+!p3@MAFK!1.04!9.95!MAFK;;chr11:61520075..61520136,+!p1@C11orf9!1.03!20.70!C11orf9;;chr17:1959369..1959388,+!p2@HIC1!1.02!25.08!HIC1;;chr7:44143978..44143989,+!p2@AEBP1!1.02!17.52!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.00!15.53!CREB3L1;;chr18:19749386..19749404,+!p2@GATA6!1.00!13.14!GATA6;;chr10:63809106..63809127,+!p1@ARID5B!0.99!121.42!ARID5B;;chr10:64576105..64576133,-!p1@EGR2!0.99!18.31!EGR2;;chr4:174450089..174450153,-!p2@HAND2!0.99!8.76!HAND2;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.61!HMGA2;;chr6:106534192..106534224,+!p1@PRDM1!0.98!24.68!PRDM1;;chr7:44143925..44143970,+!p1@AEBP1!0.97!192.28!AEBP1;;chr16:86544113..86544145,+!p1@FOXF1!0.97!10.35!FOXF1;;chr3:25469815..25469866,+!p3@RARB!0.97!8.36!RARB;;chr2:208030647..208030689,-!p1@KLF7!0.96!69.27!KLF7;;chr14:62162258..62162269,+!p2@HIF1A!0.95!78.03!HIF1A;;chr12:80085061..80085119,-!p6@PAWR!0.95!12.74!PAWR;;chr15:96869114..96869160,+!p11@NR2F2!0.94!10.75!NR2F2;;chr19:45971246..45971265,+!p1@FOSB!0.93!144.51!FOSB;;chr7:27224795..27224840,-!p2@HOXA11!0.93!7.56!HOXA11;;chr7:26191809..26191890,+!p1@NFE2L3!0.91!37.02!NFE2L3;;chr3:101546827..101546847,+!p2@NFKBIZ!0.91!10.35!NFKBIZ;;chr7:44143997..44144008,+!p3@AEBP1!0.91!9.16!AEBP1;;chr18:19749541..19749557,+!p1@GATA6!0.90!22.69!GATA6;;chr20:50179368..50179392,-!p2@NFATC2!0.90!9.16!NFATC2;;chr8:106330696..106330719,+!p2@ZFPM2!0.89!8.76!ZFPM2;;chr12:115121962..115121987,-!p1@TBX3!0.87!56.93!TBX3;;chr8:11561684..11561751,+!p1@GATA4!0.87!6.37!GATA4;;chr4:174451370..174451387,-!p1@HAND2!0.87!6.37!HAND2;;chr17:1958388..1958404,+!p1@HIC1!0.86!41.80!HIC1;;chr1:170632285..170632309,+!p1@PRRX1!0.86!7.17!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.85!10.35!FOXD1;;chr3:141121847..141121868,+!p5@ZBTB38!0.85!9.55!ZBTB38;;chr20:55204351..55204377,+!p1@TFAP2C!0.85!7.96!TFAP2C;;chr12:54402745..54402788,+!p1@HOXC8!0.84!5.97!HOXC8;;chr12:66218904..66218913,+!p11@HMGA2!0.84!5.97!HMGA2;;chr15:96869206..96869220,+!p21@NR2F2!0.84!5.97!NR2F2;;chr2:177001290..177001315,+!p1@HOXD3!0.84!5.97!HOXD3;;chr3:138665937..138665968,-!p1@FOXL2!0.84!5.97!FOXL2;;chr15:96874145..96874166,+!p7@NR2F2!0.83!11.54!NR2F2;;chr14:62203595..62203676,+!p4@HIF1A!0.83!11.15!HIF1A;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.37!PRRX1;;chr15:96876966..96877017,+!p12@NR2F2!0.82!8.36!NR2F2;;chr1:151032860..151032918,+!p1@MLLT11!0.81!70.46!MLLT11;;chr21:36260295..36260310,-!p3@RUNX1!0.81!9.16!RUNX1;;chr15:96874216..96874236,+!p13@NR2F2!0.81!8.76!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.81!8.36!ETV4;;chr11:65687362..65687436,+!p3@DRAP1!0.80!26.27!DRAP1;;chr6:106534230..106534254,+!p2@PRDM1!0.79!13.93!PRDM1;;chr15:96874244..96874259,+!p5@NR2F2!0.79!13.14!NR2F2;;chr10:119303078..119303169,+!p2@EMX2!0.79!5.18!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!0.79!5.18!HOXC9;;chr19:45908292..45908374,-!p1@PPP1R13L!0.78!48.57!PPP1R13L;;chr17:59477233..59477263,+!p1@TBX2!0.78!16.72!TBX2;;chr8:72756063..72756125,-!p1@MSC!0.78!10.75!MSC;;chr11:65686802..65686818,+!p6@DRAP1!0.78!9.16!DRAP1;;chr6:106546808..106546833,+!p3@PRDM1!0.77!6.37!PRDM1;;chr12:124873357..124873401,-!p1@NCOR2!0.76!61.31!NCOR2;;chr22:38598086..38598105,+!p1@MAFF!0.76!55.34!MAFF;;chr21:36259445..36259519,-!p4@RUNX1!0.76!14.33!RUNX1;;chr15:96869292..96869320,+!p15@NR2F2!0.76!7.17!NR2F2;;chr12:66218212..66218244,+!p5@HMGA2!0.76!7.17!HMGA2;;chr12:54447637..54447659,+!p4@HOXC4!0.76!4.78!HOXC4;;chr6:134210243..134210257,+!p1@TCF21!0.76!4.78!TCF21;;chr3:138665969..138665993,-!p2@FOXL2!0.76!4.78!FOXL2;;chr15:96869165..96869183,+!p20@NR2F2!0.76!4.78!NR2F2;;chr17:41739283..41739297,-!p1@MEOX1!0.76!4.78!MEOX1;;chr10:63809077..63809089,+!p5@ARID5B!0.75!10.75!ARID5B;;chr14:62213827..62213853,+!p6@HIF1A!0.75!6.77!HIF1A;;chr5:72743793..72743855,-!p4@FOXD1!0.75!5.57!FOXD1;;chr11:120107344..120107351,+!p1@POU2F3!0.74!5.57!POU2F3;;chr8:72756267..72756296,-!p4@MSC!0.73!6.77!MSC;;chr5:139492456..139492489,+!p7@PURA!0.73!4.38!PURA;;chr19:47523058..47523114,+!p1@NPAS1!0.73!4.38!NPAS1;;c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|fonse_cell_line=
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Line 37: Line 41:
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor4.CNhs13096.11837-124H1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor4.CNhs13096.11837-124H1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor4.CNhs13096.11837-124H1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor4.CNhs13096.11837-124H1.hg38.nobarcode.ctss.bed.gz
|id=FF:11837-124H1
|id=FF:11837-124H1
|is_a=EFO:0002091;;FF:0000275
|is_a=EFO:0002091;;FF:0000275
|is_obsolete=
|is_obsolete=
|library_id=CNhs13096
|library_id_phase_based=2:CNhs13096
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11837
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11837
|name=mesenchymal precursor cell - ovarian cancer right ovary, donor4
|name=mesenchymal precursor cell - ovarian cancer right ovary, donor4
|namespace=
|namespace=
Line 45: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13096,LSID1001,release013,COMPLETED
|profile_hcage=CNhs13096,LSID1001,release013,COMPLETED
|profile_rnaseq=,,,
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|profile_srnaseq=,,,
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Line 60: Line 78:
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|sample_cell_line=
Line 81: Line 100:
|top_motifs=SRF:1.95560344315;UFEwm:1.95303790371;EVI1:1.7122280784;TAL1_TCF{3,4,12}:1.66312341285;ESR1:1.65729556547;ALX4:1.63642206923;HMGA1,2:1.6327583633;ZNF384:1.63007100756;HIF1A:1.57465872906;TEF:1.53208372739;NFE2L1:1.52536864052;NFATC1..3:1.39770692026;PAX4:1.39275338411;GCM1,2:1.3727621256;NR6A1:1.29596984469;GLI1..3:1.27778637866;GATA4:1.27758270603;ZNF238:1.18927778034;TEAD1:1.18155071353;ZBTB6:1.1609697336;NKX3-1:1.16055876279;HES1:1.15738890034;GZF1:1.1551133402;KLF4:1.14523600224;ZIC1..3:1.14345014467;HSF1,2:1.12324739713;NKX2-2,8:1.08980050592;RXRA_VDR{dimer}:1.07990456588;MYBL2:1.03505927345;RXR{A,B,G}:0.983146739194;HMX1:0.967481775896;TLX1..3_NFIC{dimer}:0.962019777095;TBP:0.959423411222;ZBTB16:0.947890312433;TOPORS:0.915120174156;PRDM1:0.913761216298;TP53:0.871115814083;SPZ1:0.801578721226;HOX{A4,D4}:0.764969089691;EN1,2:0.721610798983;TFAP2{A,C}:0.71587974281;XBP1:0.682279284977;HOX{A5,B5}:0.65334306473;ATF6:0.644975600331;GTF2A1,2:0.619445994937;POU1F1:0.587846517908;GFI1B:0.544423863648;MZF1:0.529329982513;EBF1:0.521522772748;NR3C1:0.507932595407;XCPE1{core}:0.507584548732;SOX17:0.482294184961;ONECUT1,2:0.481545787304;TFCP2:0.466478007514;MTE{core}:0.465333064728;CDC5L:0.462499081433;HLF:0.459102389332;MAFB:0.457827249328;NKX3-2:0.433904498626;GTF2I:0.432526036979;TBX4,5:0.424641445761;TFAP2B:0.395973126977;NHLH1,2:0.342024443121;FOXD3:0.341536598413;POU3F1..4:0.339438361862;NFE2L2:0.329108093718;MYFfamily:0.304592785513;AIRE:0.290262393594;POU6F1:0.286585463143;IRF1,2:0.253868759724;NKX2-1,4:0.249576573218;BACH2:0.24894857838;FOXP1:0.247392020575;PAX3,7:0.239058710655;MAZ:0.235574580188;FOXL1:0.19877225736;IKZF1:0.195903264395;TFDP1:0.194240301974;PAX2:0.182047260604;MED-1{core}:0.143324811117;ZFP161:0.137389936364;HNF1A:0.122316551494;FOS_FOS{B,L1}_JUN{B,D}:0.120282219825;HAND1,2:0.0782364549981;PATZ1:0.0697286570834;SOX2:0.0660591771168;TLX2:0.0631793621769;SMAD1..7,9:0.0556595846959;AHR_ARNT_ARNT2:0.0140851644541;PAX8:0.00481643278736;ALX1:-0.0104450274075;REST:-0.0128056958878;NFE2:-0.0260746023554;TFAP4:-0.0287494531496;HIC1:-0.0305245788882;NFIX:-0.0400619765548;RREB1:-0.0430262113364;AR:-0.0508633981595;ZNF148:-0.064904537364;PPARG:-0.0662539778463;NKX6-1,2:-0.0810101136685;PITX1..3:-0.0919646591885;LHX3,4:-0.100193978662;PAX5:-0.101992224371;STAT2,4,6:-0.107973035431;POU2F1..3:-0.109046775593;EGR1..3:-0.109583607513;SP1:-0.110661527766;SOX5:-0.111492036538;MEF2{A,B,C,D}:-0.11413438326;NANOG{mouse}:-0.123673429355;FOSL2:-0.143799035149;NFKB1_REL_RELA:-0.145933405125;bHLH_family:-0.164332598699;LEF1_TCF7_TCF7L1,2:-0.18362820127;CDX1,2,4:-0.185216550534;T:-0.201088244174;ATF2:-0.219757566727;MYB:-0.233718937611;RUNX1..3:-0.237761127993;HOX{A6,A7,B6,B7}:-0.253996276971;HOXA9_MEIS1:-0.27866599905;SREBF1,2:-0.288864378622;BPTF:-0.307038875101;FOX{I1,J2}:-0.355980270104;CRX:-0.362375979695;ZNF423:-0.368609128223;RFX1:-0.386643591139;IRF7:-0.390520361822;ELK1,4_GABP{A,B1}:-0.395510558464;CEBPA,B_DDIT3:-0.419705336912;JUN:-0.421057346138;ETS1,2:-0.425525944691;ESRRA:-0.427821020502;YY1:-0.438043262931;PAX1,9:-0.450185500658;HNF4A_NR2F1,2:-0.458084320916;NR1H4:-0.460082508953;FOXP3:-0.460957723962;PAX6:-0.468778492198;FOX{D1,D2}:-0.473900344244;FOXM1:-0.483491631763;SPIB:-0.4960777255;ADNP_IRX_SIX_ZHX:-0.506691513858;NR5A1,2:-0.509442370922;FOXN1:-0.51289583473;DBP:-0.513170264503;SNAI1..3:-0.544139399232;MYOD1:-0.546318714666;ZNF143:-0.552295756117;FOXO1,3,4:-0.559589473641;OCT4_SOX2{dimer}:-0.560754513556;DMAP1_NCOR{1,2}_SMARC:-0.56489087222;NRF1:-0.572782112093;STAT1,3:-0.576821938456;SOX{8,9,10}:-0.587122325191;EP300:-0.587604999713;LMO2:-0.60478489957;ARID5B:-0.606195039662;FOXA2:-0.608549062416;CREB1:-0.60888531042;SPI1:-0.613258586391;HBP1_HMGB_SSRP1_UBTF:-0.631643174179;POU5F1:-0.659021062241;E2F1..5:-0.694263224401;STAT5{A,B}:-0.715131279586;IKZF2:-0.718055469591;NFIL3:-0.719095819315;ATF4:-0.72923393034;ELF1,2,4:-0.735988632479;ATF5_CREB3:-0.741274839296;MTF1:-0.771702370339;ZEB1:-0.846219277891;CUX2:-0.908810596294;PRRX1,2:-0.918493980239;TGIF1:-0.927066126894;GATA6:-1.00532059087;RBPJ:-1.02887705749;RFX2..5_RFXANK_RFXAP:-1.07448823882;GFI1:-1.09444122617;NKX2-3_NKX2-5:-1.12204198813;BREu{core}:-1.14924777757;RORA:-1.17216113566;VSX1,2:-1.17713427128;FOX{F1,F2,J1}:-1.2178834472;PBX1:-1.3602772503;NFY{A,B,C}:-1.41634628705;NANOG:-1.43039624838;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.50000571749;FOXQ1:-1.60270950937;PDX1:-1.62956719012;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.81637524077
|top_motifs=SRF:1.95560344315;UFEwm:1.95303790371;EVI1:1.7122280784;TAL1_TCF{3,4,12}:1.66312341285;ESR1:1.65729556547;ALX4:1.63642206923;HMGA1,2:1.6327583633;ZNF384:1.63007100756;HIF1A:1.57465872906;TEF:1.53208372739;NFE2L1:1.52536864052;NFATC1..3:1.39770692026;PAX4:1.39275338411;GCM1,2:1.3727621256;NR6A1:1.29596984469;GLI1..3:1.27778637866;GATA4:1.27758270603;ZNF238:1.18927778034;TEAD1:1.18155071353;ZBTB6:1.1609697336;NKX3-1:1.16055876279;HES1:1.15738890034;GZF1:1.1551133402;KLF4:1.14523600224;ZIC1..3:1.14345014467;HSF1,2:1.12324739713;NKX2-2,8:1.08980050592;RXRA_VDR{dimer}:1.07990456588;MYBL2:1.03505927345;RXR{A,B,G}:0.983146739194;HMX1:0.967481775896;TLX1..3_NFIC{dimer}:0.962019777095;TBP:0.959423411222;ZBTB16:0.947890312433;TOPORS:0.915120174156;PRDM1:0.913761216298;TP53:0.871115814083;SPZ1:0.801578721226;HOX{A4,D4}:0.764969089691;EN1,2:0.721610798983;TFAP2{A,C}:0.71587974281;XBP1:0.682279284977;HOX{A5,B5}:0.65334306473;ATF6:0.644975600331;GTF2A1,2:0.619445994937;POU1F1:0.587846517908;GFI1B:0.544423863648;MZF1:0.529329982513;EBF1:0.521522772748;NR3C1:0.507932595407;XCPE1{core}:0.507584548732;SOX17:0.482294184961;ONECUT1,2:0.481545787304;TFCP2:0.466478007514;MTE{core}:0.465333064728;CDC5L:0.462499081433;HLF:0.459102389332;MAFB:0.457827249328;NKX3-2:0.433904498626;GTF2I:0.432526036979;TBX4,5:0.424641445761;TFAP2B:0.395973126977;NHLH1,2:0.342024443121;FOXD3:0.341536598413;POU3F1..4:0.339438361862;NFE2L2:0.329108093718;MYFfamily:0.304592785513;AIRE:0.290262393594;POU6F1:0.286585463143;IRF1,2:0.253868759724;NKX2-1,4:0.249576573218;BACH2:0.24894857838;FOXP1:0.247392020575;PAX3,7:0.239058710655;MAZ:0.235574580188;FOXL1:0.19877225736;IKZF1:0.195903264395;TFDP1:0.194240301974;PAX2:0.182047260604;MED-1{core}:0.143324811117;ZFP161:0.137389936364;HNF1A:0.122316551494;FOS_FOS{B,L1}_JUN{B,D}:0.120282219825;HAND1,2:0.0782364549981;PATZ1:0.0697286570834;SOX2:0.0660591771168;TLX2:0.0631793621769;SMAD1..7,9:0.0556595846959;AHR_ARNT_ARNT2:0.0140851644541;PAX8:0.00481643278736;ALX1:-0.0104450274075;REST:-0.0128056958878;NFE2:-0.0260746023554;TFAP4:-0.0287494531496;HIC1:-0.0305245788882;NFIX:-0.0400619765548;RREB1:-0.0430262113364;AR:-0.0508633981595;ZNF148:-0.064904537364;PPARG:-0.0662539778463;NKX6-1,2:-0.0810101136685;PITX1..3:-0.0919646591885;LHX3,4:-0.100193978662;PAX5:-0.101992224371;STAT2,4,6:-0.107973035431;POU2F1..3:-0.109046775593;EGR1..3:-0.109583607513;SP1:-0.110661527766;SOX5:-0.111492036538;MEF2{A,B,C,D}:-0.11413438326;NANOG{mouse}:-0.123673429355;FOSL2:-0.143799035149;NFKB1_REL_RELA:-0.145933405125;bHLH_family:-0.164332598699;LEF1_TCF7_TCF7L1,2:-0.18362820127;CDX1,2,4:-0.185216550534;T:-0.201088244174;ATF2:-0.219757566727;MYB:-0.233718937611;RUNX1..3:-0.237761127993;HOX{A6,A7,B6,B7}:-0.253996276971;HOXA9_MEIS1:-0.27866599905;SREBF1,2:-0.288864378622;BPTF:-0.307038875101;FOX{I1,J2}:-0.355980270104;CRX:-0.362375979695;ZNF423:-0.368609128223;RFX1:-0.386643591139;IRF7:-0.390520361822;ELK1,4_GABP{A,B1}:-0.395510558464;CEBPA,B_DDIT3:-0.419705336912;JUN:-0.421057346138;ETS1,2:-0.425525944691;ESRRA:-0.427821020502;YY1:-0.438043262931;PAX1,9:-0.450185500658;HNF4A_NR2F1,2:-0.458084320916;NR1H4:-0.460082508953;FOXP3:-0.460957723962;PAX6:-0.468778492198;FOX{D1,D2}:-0.473900344244;FOXM1:-0.483491631763;SPIB:-0.4960777255;ADNP_IRX_SIX_ZHX:-0.506691513858;NR5A1,2:-0.509442370922;FOXN1:-0.51289583473;DBP:-0.513170264503;SNAI1..3:-0.544139399232;MYOD1:-0.546318714666;ZNF143:-0.552295756117;FOXO1,3,4:-0.559589473641;OCT4_SOX2{dimer}:-0.560754513556;DMAP1_NCOR{1,2}_SMARC:-0.56489087222;NRF1:-0.572782112093;STAT1,3:-0.576821938456;SOX{8,9,10}:-0.587122325191;EP300:-0.587604999713;LMO2:-0.60478489957;ARID5B:-0.606195039662;FOXA2:-0.608549062416;CREB1:-0.60888531042;SPI1:-0.613258586391;HBP1_HMGB_SSRP1_UBTF:-0.631643174179;POU5F1:-0.659021062241;E2F1..5:-0.694263224401;STAT5{A,B}:-0.715131279586;IKZF2:-0.718055469591;NFIL3:-0.719095819315;ATF4:-0.72923393034;ELF1,2,4:-0.735988632479;ATF5_CREB3:-0.741274839296;MTF1:-0.771702370339;ZEB1:-0.846219277891;CUX2:-0.908810596294;PRRX1,2:-0.918493980239;TGIF1:-0.927066126894;GATA6:-1.00532059087;RBPJ:-1.02887705749;RFX2..5_RFXANK_RFXAP:-1.07448823882;GFI1:-1.09444122617;NKX2-3_NKX2-5:-1.12204198813;BREu{core}:-1.14924777757;RORA:-1.17216113566;VSX1,2:-1.17713427128;FOX{F1,F2,J1}:-1.2178834472;PBX1:-1.3602772503;NFY{A,B,C}:-1.41634628705;NANOG:-1.43039624838;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.50000571749;FOXQ1:-1.60270950937;PDX1:-1.62956719012;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.81637524077
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11837-124H1;search_select_hide=table117:FF:11837-124H1
}}
}}

Latest revision as of 18:23, 4 June 2020

Name:mesenchymal precursor cell - ovarian cancer right ovary, donor4
Species:Human (Homo sapiens)
Library ID:CNhs13096
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004788
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13096 CAGE DRX008567 DRR009439
Accession ID Hg19

Library idBAMCTSS
CNhs13096 DRZ000864 DRZ002249
Accession ID Hg38

Library idBAMCTSS
CNhs13096 DRZ012214 DRZ013599
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.203
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.155
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.697
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.146
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0213
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.356
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.697
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0376
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0643
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.146
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.381
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.579
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.622
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.146
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.415
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.253
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.317
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.146
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.622
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.545
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.138
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.731
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.791
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13096

Jaspar motifP-value
MA0002.20.171
MA0003.10.988
MA0004.10.0249
MA0006.10.131
MA0007.10.462
MA0009.10.663
MA0014.10.145
MA0017.10.058
MA0018.23.48088e-5
MA0019.10.767
MA0024.12.28418e-7
MA0025.19.82252e-4
MA0027.10.666
MA0028.18.37702e-5
MA0029.10.94
MA0030.10.0226
MA0031.10.00941
MA0035.20.004
MA0038.16.83702e-4
MA0039.20.00104
MA0040.10.921
MA0041.10.385
MA0042.10.398
MA0043.13.95722e-4
MA0046.10.19
MA0047.20.237
MA0048.10.249
MA0050.10.334
MA0051.10.727
MA0052.10.184
MA0055.10.174
MA0057.10.348
MA0058.10.00162
MA0059.10.463
MA0060.17.08641e-18
MA0061.10.654
MA0062.21.23831e-12
MA0065.20.118
MA0066.10.625
MA0067.10.0116
MA0068.10.887
MA0069.10.176
MA0070.10.796
MA0071.10.996
MA0072.10.447
MA0073.10.581
MA0074.10.387
MA0076.12.5374e-6
MA0077.10.944
MA0078.10.598
MA0079.20.0672
MA0080.22.39888e-8
MA0081.10.00277
MA0083.14.81742e-7
MA0084.10.232
MA0087.10.557
MA0088.10.224
MA0090.10.00441
MA0091.10.142
MA0092.10.307
MA0093.10.0193
MA0099.20.513
MA0100.10.0462
MA0101.10.256
MA0102.20.293
MA0103.10.0113
MA0104.20.00109
MA0105.10.892
MA0106.10.00619
MA0107.10.35
MA0108.20.024
MA0111.10.562
MA0112.20.0219
MA0113.10.72
MA0114.10.124
MA0115.10.0524
MA0116.10.613
MA0117.10.274
MA0119.10.0386
MA0122.10.552
MA0124.10.297
MA0125.10.257
MA0131.10.169
MA0135.10.0901
MA0136.18.89346e-11
MA0137.20.0101
MA0138.20.888
MA0139.10.807
MA0140.10.0207
MA0141.10.312
MA0142.10.205
MA0143.10.692
MA0144.10.634
MA0145.10.647
MA0146.10.376
MA0147.10.0286
MA0148.10.408
MA0149.10.65
MA0150.10.407
MA0152.10.0754
MA0153.10.18
MA0154.10.949
MA0155.10.321
MA0156.17.54596e-9
MA0157.10.0733
MA0159.10.859
MA0160.10.0689
MA0162.10.0273
MA0163.10.0325
MA0164.10.49
MA0258.10.455
MA0259.10.234



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13096

Novel motifP-value
10.63
100.894
1000.826
1010.849
1020.42
1030.944
1040.969
1050.0314
1060.00388
1070.0211
1080.11
1090.536
110.731
1100.277
1110.741
1120.216
1130.423
1140.136
1150.0811
1160.112
1170.882
1180.816
1190.69
120.28
1200.0938
1210.668
1220.0196
1230.355
1240.198
1250.821
1260.987
1270.454
1280.225
1290.603
130.443
1300.304
1310.42
1320.319
1330.591
1340.868
1350.455
1360.928
1370.244
1380.72
1390.23
140.179
1400.429
1410.71
1420.979
1430.766
1440.264
1450.246
1460.509
1470.05
1480.835
1490.0737
150.972
1500.119
1510.534
1520.0318
1530.775
1540.781
1550.0707
1560.868
1570.786
1580.315
1590.877
160.0866
1600.723
1610.911
1620.182
1630.121
1640.017
1650.693
1660.0873
1670.439
1680.492
1690.202
170.309
180.248
190.0264
20.422
200.579
210.182
220.856
230.109
240.568
250.0417
260.799
270.698
280.283
290.698
30.505
300.915
310.899
321.08368e-8
330.567
340.936
350.601
360.0573
370.0902
380.503
390.217
40.355
400.549
410.835
420.46
430.912
440.543
450.556
460.294
470.441
480.748
490.743
50.713
500.403
510.922
520.886
530.236
540.808
550.36
560.967
570.545
580.181
590.601
60.532
600.974
610.406
620.781
630.312
640.347
650.719
660.0386
670.387
680.629
690.536
70.0634
700.112
710.435
720.611
730.0173
740.14
750.941
760.821
770.12
780.777
798.02402e-4
80.159
800.141
810.905
820.894
830.407
840.645
850.0441
860.827
870.695
880.651
890.568
90.951
900.853
910.331
920.413
930.781
940.615
950.75
960.663
970.516
980.32
990.0406



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13096


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002118 (right ovary)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000275 (human mesenchymal precursor cell- ovarian cancer-right ovary sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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