FF:11837-124H1: Difference between revisions

Latest revision as of 18:23, 4 June 2020

Name:	mesenchymal precursor cell - ovarian cancer right ovary, donor4
Species:	Human (Homo sapiens)
Library ID:	CNhs13096
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ovary
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004788

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13096		CAGE		DRX008567		DRR009439

Accession ID Hg19

Library id		BAM		CTSS
CNhs13096		DRZ000864		DRZ002249

Accession ID Hg38

Library id		BAM		CTSS
CNhs13096		DRZ012214		DRZ013599

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.203
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.155
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.697
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.146
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0213
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.356
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.697
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0376
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0643
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.146
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.381
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.579
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.622
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.146
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.415
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.253
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.317
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.146
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.622
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.545
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	1.138
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.731
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.791
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13096

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.171
MA0003.1	MA0003.1	0.988
MA0004.1	MA0004.1	0.0249
MA0006.1	MA0006.1	0.131
MA0007.1	MA0007.1	0.462
MA0009.1	MA0009.1	0.663
MA0014.1	MA0014.1	0.145
MA0017.1	MA0017.1	0.058
MA0018.2	MA0018.2	3.48088e-5
MA0019.1	MA0019.1	0.767
MA0024.1	MA0024.1	2.28418e-7
MA0025.1	MA0025.1	9.82252e-4
MA0027.1	MA0027.1	0.666
MA0028.1	MA0028.1	8.37702e-5
MA0029.1	MA0029.1	0.94
MA0030.1	MA0030.1	0.0226
MA0031.1	MA0031.1	0.00941
MA0035.2	MA0035.2	0.004
MA0038.1	MA0038.1	6.83702e-4
MA0039.2	MA0039.2	0.00104
MA0040.1	MA0040.1	0.921
MA0041.1	MA0041.1	0.385
MA0042.1	MA0042.1	0.398
MA0043.1	MA0043.1	3.95722e-4
MA0046.1	MA0046.1	0.19
MA0047.2	MA0047.2	0.237
MA0048.1	MA0048.1	0.249
MA0050.1	MA0050.1	0.334
MA0051.1	MA0051.1	0.727
MA0052.1	MA0052.1	0.184
MA0055.1	MA0055.1	0.174
MA0057.1	MA0057.1	0.348
MA0058.1	MA0058.1	0.00162
MA0059.1	MA0059.1	0.463
MA0060.1	MA0060.1	7.08641e-18
MA0061.1	MA0061.1	0.654
MA0062.2	MA0062.2	1.23831e-12
MA0065.2	MA0065.2	0.118
MA0066.1	MA0066.1	0.625
MA0067.1	MA0067.1	0.0116
MA0068.1	MA0068.1	0.887
MA0069.1	MA0069.1	0.176
MA0070.1	MA0070.1	0.796
MA0071.1	MA0071.1	0.996
MA0072.1	MA0072.1	0.447
MA0073.1	MA0073.1	0.581
MA0074.1	MA0074.1	0.387
MA0076.1	MA0076.1	2.5374e-6
MA0077.1	MA0077.1	0.944
MA0078.1	MA0078.1	0.598
MA0079.2	MA0079.2	0.0672
MA0080.2	MA0080.2	2.39888e-8
MA0081.1	MA0081.1	0.00277
MA0083.1	MA0083.1	4.81742e-7
MA0084.1	MA0084.1	0.232
MA0087.1	MA0087.1	0.557
MA0088.1	MA0088.1	0.224
MA0090.1	MA0090.1	0.00441
MA0091.1	MA0091.1	0.142
MA0092.1	MA0092.1	0.307
MA0093.1	MA0093.1	0.0193
MA0099.2	MA0099.2	0.513
MA0100.1	MA0100.1	0.0462
MA0101.1	MA0101.1	0.256
MA0102.2	MA0102.2	0.293
MA0103.1	MA0103.1	0.0113
MA0104.2	MA0104.2	0.00109
MA0105.1	MA0105.1	0.892
MA0106.1	MA0106.1	0.00619
MA0107.1	MA0107.1	0.35
MA0108.2	MA0108.2	0.024
MA0111.1	MA0111.1	0.562
MA0112.2	MA0112.2	0.0219
MA0113.1	MA0113.1	0.72
MA0114.1	MA0114.1	0.124
MA0115.1	MA0115.1	0.0524
MA0116.1	MA0116.1	0.613
MA0117.1	MA0117.1	0.274
MA0119.1	MA0119.1	0.0386
MA0122.1	MA0122.1	0.552
MA0124.1	MA0124.1	0.297
MA0125.1	MA0125.1	0.257
MA0131.1	MA0131.1	0.169
MA0135.1	MA0135.1	0.0901
MA0136.1	MA0136.1	8.89346e-11
MA0137.2	MA0137.2	0.0101
MA0138.2	MA0138.2	0.888
MA0139.1	MA0139.1	0.807
MA0140.1	MA0140.1	0.0207
MA0141.1	MA0141.1	0.312
MA0142.1	MA0142.1	0.205
MA0143.1	MA0143.1	0.692
MA0144.1	MA0144.1	0.634
MA0145.1	MA0145.1	0.647
MA0146.1	MA0146.1	0.376
MA0147.1	MA0147.1	0.0286
MA0148.1	MA0148.1	0.408
MA0149.1	MA0149.1	0.65
MA0150.1	MA0150.1	0.407
MA0152.1	MA0152.1	0.0754
MA0153.1	MA0153.1	0.18
MA0154.1	MA0154.1	0.949
MA0155.1	MA0155.1	0.321
MA0156.1	MA0156.1	7.54596e-9
MA0157.1	MA0157.1	0.0733
MA0159.1	MA0159.1	0.859
MA0160.1	MA0160.1	0.0689
MA0162.1	MA0162.1	0.0273
MA0163.1	MA0163.1	0.0325
MA0164.1	MA0164.1	0.49
MA0258.1	MA0258.1	0.455
MA0259.1	MA0259.1	0.234

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13096

Novel motif	Logo	P-value
1	1	0.63
10	10	0.894
100	100	0.826
101	101	0.849
102	102	0.42
103	103	0.944
104	104	0.969
105	105	0.0314
106	106	0.00388
107	107	0.0211
108	108	0.11
109	109	0.536
11	11	0.731
110	110	0.277
111	111	0.741
112	112	0.216
113	113	0.423
114	114	0.136
115	115	0.0811
116	116	0.112
117	117	0.882
118	118	0.816
119	119	0.69
12	12	0.28
120	120	0.0938
121	121	0.668
122	122	0.0196
123	123	0.355
124	124	0.198
125	125	0.821
126	126	0.987
127	127	0.454
128	128	0.225
129	129	0.603
13	13	0.443
130	130	0.304
131	131	0.42
132	132	0.319
133	133	0.591
134	134	0.868
135	135	0.455
136	136	0.928
137	137	0.244
138	138	0.72
139	139	0.23
14	14	0.179
140	140	0.429
141	141	0.71
142	142	0.979
143	143	0.766
144	144	0.264
145	145	0.246
146	146	0.509
147	147	0.05
148	148	0.835
149	149	0.0737
15	15	0.972
150	150	0.119
151	151	0.534
152	152	0.0318
153	153	0.775
154	154	0.781
155	155	0.0707
156	156	0.868
157	157	0.786
158	158	0.315
159	159	0.877
16	16	0.0866
160	160	0.723
161	161	0.911
162	162	0.182
163	163	0.121
164	164	0.017
165	165	0.693
166	166	0.0873
167	167	0.439
168	168	0.492
169	169	0.202
17	17	0.309
18	18	0.248
19	19	0.0264
2	2	0.422
20	20	0.579
21	21	0.182
22	22	0.856
23	23	0.109
24	24	0.568
25	25	0.0417
26	26	0.799
27	27	0.698
28	28	0.283
29	29	0.698
3	3	0.505
30	30	0.915
31	31	0.899
32	32	1.08368e-8
33	33	0.567
34	34	0.936
35	35	0.601
36	36	0.0573
37	37	0.0902
38	38	0.503
39	39	0.217
4	4	0.355
40	40	0.549
41	41	0.835
42	42	0.46
43	43	0.912
44	44	0.543
45	45	0.556
46	46	0.294
47	47	0.441
48	48	0.748
49	49	0.743
5	5	0.713
50	50	0.403
51	51	0.922
52	52	0.886
53	53	0.236
54	54	0.808
55	55	0.36
56	56	0.967
57	57	0.545
58	58	0.181
59	59	0.601
6	6	0.532
60	60	0.974
61	61	0.406
62	62	0.781
63	63	0.312
64	64	0.347
65	65	0.719
66	66	0.0386
67	67	0.387
68	68	0.629
69	69	0.536
7	7	0.0634
70	70	0.112
71	71	0.435
72	72	0.611
73	73	0.0173
74	74	0.14
75	75	0.941
76	76	0.821
77	77	0.12
78	78	0.777
79	79	8.02402e-4
8	8	0.159
80	80	0.141
81	81	0.905
82	82	0.894
83	83	0.407
84	84	0.645
85	85	0.0441
86	86	0.827
87	87	0.695
88	88	0.651
89	89	0.568
9	9	0.951
90	90	0.853
91	91	0.331
92	92	0.413
93	93	0.781
94	94	0.615
95	95	0.75
96	96	0.663
97	97	0.516
98	98	0.32
99	99	0.0406

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13096

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000275 human mesenchymal precursor cell- ovarian cancer-right ovary sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002118 (right ovary)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000275 (human mesenchymal precursor cell- ovarian cancer-right ovary sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008459
+|DRA_sample_Accession=CAGE@SAMD00004788
-|accession_numbers=CAGE;DRX008567;DRR009439;DRZ000864;DRZ002249
+|accession_numbers=CAGE;DRX008567;DRR009439;DRZ000864;DRZ002249;DRZ012214;DRZ013599
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002118,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:176969228..176969260,+!p1@HOXD11!1.29!18.31!HOXD11;;chr2:19558373..19558392,-!p1@OSR1!1.26!46.18!OSR1;;chr8:55370487..55370503,+!p1@SOX17!1.21!15.13!SOX17;;chr15:96869255..96869291,+!p6@NR2F2!1.20!26.67!NR2F2;;chr11:46299199..46299233,+!p1@CREB3L1!1.17!71.26!CREB3L1;;chr2:176969179..176969226,+!p2@HOXD11!1.15!13.14!HOXD11;;chr3:25470156..25470227,+!p2@RARB!1.14!12.74!RARB;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.14!12.74!HOXC5;;chr3:25469724..25469773,+!p1@RARB!1.13!17.91!RARB;;chr19:46801639..46801699,+!p1@HIF3A!1.13!12.34!HIF3A;;chr15:96869222..96869251,+!p18@NR2F2!1.11!13.93!NR2F2;;chr3:141087393..141087426,+!p3@ZBTB38!1.10!45.78!ZBTB38;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.65!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!1.08!29.06!ZFPM2;;chr12:66218598..66218645,+!p2@HMGA2!1.07!50.16!HMGA2;;chr7:27224842..27224872,-!p1@HOXA11!1.06!10.35!HOXA11;;chr19:42636586..42636607,-!p1@POU2F2!1.05!28.26!POU2F2;;chr14:62162285..62162296,+!p3@HIF1A!1.04!52.55!HIF1A;;chr7:1577899..1577943,+!p3@MAFK!1.04!9.95!MAFK;;chr11:61520075..61520136,+!p1@C11orf9!1.03!20.70!C11orf9;;chr17:1959369..1959388,+!p2@HIC1!1.02!25.08!HIC1;;chr7:44143978..44143989,+!p2@AEBP1!1.02!17.52!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.00!15.53!CREB3L1;;chr18:19749386..19749404,+!p2@GATA6!1.00!13.14!GATA6;;chr10:63809106..63809127,+!p1@ARID5B!0.99!121.42!ARID5B;;chr10:64576105..64576133,-!p1@EGR2!0.99!18.31!EGR2;;chr4:174450089..174450153,-!p2@HAND2!0.99!8.76!HAND2;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.61!HMGA2;;chr6:106534192..106534224,+!p1@PRDM1!0.98!24.68!PRDM1;;chr7:44143925..44143970,+!p1@AEBP1!0.97!192.28!AEBP1;;chr16:86544113..86544145,+!p1@FOXF1!0.97!10.35!FOXF1;;chr3:25469815..25469866,+!p3@RARB!0.97!8.36!RARB;;chr2:208030647..208030689,-!p1@KLF7!0.96!69.27!KLF7;;chr14:62162258..62162269,+!p2@HIF1A!0.95!78.03!HIF1A;;chr12:80085061..80085119,-!p6@PAWR!0.95!12.74!PAWR;;chr15:96869114..96869160,+!p11@NR2F2!0.94!10.75!NR2F2;;chr19:45971246..45971265,+!p1@FOSB!0.93!144.51!FOSB;;chr7:27224795..27224840,-!p2@HOXA11!0.93!7.56!HOXA11;;chr7:26191809..26191890,+!p1@NFE2L3!0.91!37.02!NFE2L3;;chr3:101546827..101546847,+!p2@NFKBIZ!0.91!10.35!NFKBIZ;;chr7:44143997..44144008,+!p3@AEBP1!0.91!9.16!AEBP1;;chr18:19749541..19749557,+!p1@GATA6!0.90!22.69!GATA6;;chr20:50179368..50179392,-!p2@NFATC2!0.90!9.16!NFATC2;;chr8:106330696..106330719,+!p2@ZFPM2!0.89!8.76!ZFPM2;;chr12:115121962..115121987,-!p1@TBX3!0.87!56.93!TBX3;;chr8:11561684..11561751,+!p1@GATA4!0.87!6.37!GATA4;;chr4:174451370..174451387,-!p1@HAND2!0.87!6.37!HAND2;;chr17:1958388..1958404,+!p1@HIC1!0.86!41.80!HIC1;;chr1:170632285..170632309,+!p1@PRRX1!0.86!7.17!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.85!10.35!FOXD1;;chr3:141121847..141121868,+!p5@ZBTB38!0.85!9.55!ZBTB38;;chr20:55204351..55204377,+!p1@TFAP2C!0.85!7.96!TFAP2C;;chr12:54402745..54402788,+!p1@HOXC8!0.84!5.97!HOXC8;;chr12:66218904..66218913,+!p11@HMGA2!0.84!5.97!HMGA2;;chr15:96869206..96869220,+!p21@NR2F2!0.84!5.97!NR2F2;;chr2:177001290..177001315,+!p1@HOXD3!0.84!5.97!HOXD3;;chr3:138665937..138665968,-!p1@FOXL2!0.84!5.97!FOXL2;;chr15:96874145..96874166,+!p7@NR2F2!0.83!11.54!NR2F2;;chr14:62203595..62203676,+!p4@HIF1A!0.83!11.15!HIF1A;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.37!PRRX1;;chr15:96876966..96877017,+!p12@NR2F2!0.82!8.36!NR2F2;;chr1:151032860..151032918,+!p1@MLLT11!0.81!70.46!MLLT11;;chr21:36260295..36260310,-!p3@RUNX1!0.81!9.16!RUNX1;;chr15:96874216..96874236,+!p13@NR2F2!0.81!8.76!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.81!8.36!ETV4;;chr11:65687362..65687436,+!p3@DRAP1!0.80!26.27!DRAP1;;chr6:106534230..106534254,+!p2@PRDM1!0.79!13.93!PRDM1;;chr15:96874244..96874259,+!p5@NR2F2!0.79!13.14!NR2F2;;chr10:119303078..119303169,+!p2@EMX2!0.79!5.18!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!0.79!5.18!HOXC9;;chr19:45908292..45908374,-!p1@PPP1R13L!0.78!48.57!PPP1R13L;;chr17:59477233..59477263,+!p1@TBX2!0.78!16.72!TBX2;;chr8:72756063..72756125,-!p1@MSC!0.78!10.75!MSC;;chr11:65686802..65686818,+!p6@DRAP1!0.78!9.16!DRAP1;;chr6:106546808..106546833,+!p3@PRDM1!0.77!6.37!PRDM1;;chr12:124873357..124873401,-!p1@NCOR2!0.76!61.31!NCOR2;;chr22:38598086..38598105,+!p1@MAFF!0.76!55.34!MAFF;;chr21:36259445..36259519,-!p4@RUNX1!0.76!14.33!RUNX1;;chr15:96869292..96869320,+!p15@NR2F2!0.76!7.17!NR2F2;;chr12:66218212..66218244,+!p5@HMGA2!0.76!7.17!HMGA2;;chr12:54447637..54447659,+!p4@HOXC4!0.76!4.78!HOXC4;;chr6:134210243..134210257,+!p1@TCF21!0.76!4.78!TCF21;;chr3:138665969..138665993,-!p2@FOXL2!0.76!4.78!FOXL2;;chr15:96869165..96869183,+!p20@NR2F2!0.76!4.78!NR2F2;;chr17:41739283..41739297,-!p1@MEOX1!0.76!4.78!MEOX1;;chr10:63809077..63809089,+!p5@ARID5B!0.75!10.75!ARID5B;;chr14:62213827..62213853,+!p6@HIF1A!0.75!6.77!HIF1A;;chr5:72743793..72743855,-!p4@FOXD1!0.75!5.57!FOXD1;;chr11:120107344..120107351,+!p1@POU2F3!0.74!5.57!POU2F3;;chr8:72756267..72756296,-!p4@MSC!0.73!6.77!MSC;;chr5:139492456..139492489,+!p7@PURA!0.73!4.38!PURA;;chr19:47523058..47523114,+!p1@NPAS1!0.73!4.38!NPAS1;;chr16:31076332..31076388,-!p3@ZNF668!0.73!4.38!ZNF668;;chr3:114343039..114343085,-!p8@ZBTB20!0.73!4.38!ZBTB20;;chr2:239756739..239756755,+!p2@TWIST2!0.71!7.56!TWIST2;;chr8:72756637..72756664,-!p3@MSC!0.71!4.78!MSC;;chr9:35732647..35732678,+!p2@CREB3!0.70!25.08!CREB3;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.70!FOXD1;;chr2:239756671..239756732,+!p1@TWIST2!0.70!14.33!TWIST2;;chr12:66218183..66218209,+!p4@HMGA2!0.70!8.36!HMGA2;;chr21:36260343..36260402,-!p6@RUNX1!0.70!6.77!RUNX1;;chr11:12696071..12696086,+!p3@TEAD1!0.70!5.57!TEAD1;;chr11:125034640..125034655,+!p1@PKNOX2!0.70!3.98!PKNOX2;;chr11:34642612..34642646,+!p1@EHF!0.70!3.98!EHF;;chr12:66218923..66218934,+!p14@HMGA2!0.70!3.98!HMGA2;;chr2:176969124..176969155,+!p5@HOXD11!0.70!3.98!HOXD11;;chr2:176994919..176994931,+!p2@HOXD8!0.70!3.98!HOXD8;;chr3:101575889..101575903,+!p3@NFKBIZ!0.70!3.98!NFKBIZ;;chr2:145275162..145275202,-!p2@ZEB2!0.69!26.27!ZEB2;;chr5:92918919..92918942,+!p1@NR2F1!0.69!19.51!NR2F1;;chr2:200322654..200322707,-!p2@SATB2!0.69!5.97!SATB2;;chr12:26277817..26277863,-!p2@BHLHE41!0.69!5.57!BHLHE41;;chr5:92918956..92918969,+!p4@NR2F1!0.69!4.38!NR2F1;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.11!TOX2;;chr3:141105705..141105770,+!p4@ZBTB38!0.68!4.78!ZBTB38;;chr1:170633262..170633285,+!p3@PRRX1!0.68!4.38!PRRX1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.66!51.75!ZC3H12A;;chr3:5021268..5021282,+!p4@BHLHE40!0.66!7.96!BHLHE40;;chr2:121493492..121493537,+!p2@GLI2!0.66!6.37!GLI2;;chr1:170633348..170633399,+!p2@PRRX1!0.66!5.18!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.66!3.58!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.66!3.58!HOXD8;;chr3:138665760..138665772,-!p3@FOXL2!0.66!3.58!FOXL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.66!3.58!ZBTB38;;chr9:127269661..127269719,-!p1@NR5A1!0.66!3.58!NR5A1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.65!212.98!NFKBIZ;;chr12:66218573..66218596,+!p7@HMGA2!0.65!5.57!HMGA2;;chr17:46126136..46126152,+!p1@NFE2L1!0.64!205.82!NFE2L1;;chr21:30671690..30671762,+!p2@BACH1!0.64!13.14!BACH1;;chr17:38498594..38498661,+!p2@RARA!0.64!12.74!RARA;;chr7:137686763..137686784,-!p5@CREB3L2!0.64!6.37!CREB3L2;;chr17:41622765..41622821,-!p2@ETV4!0.64!5.57!ETV4;;chr20:6748325..6748352,+!p1@BMP2!0.64!5.18!BMP2;;chr15:83953397..83953425,-!p1@BNC1!0.64!3.98!BNC1;;chr2:101591314..101591333,+!p2@NPAS2!0.64!3.98!NPAS2;;chr18:19749517..19749531,+!p3@GATA6!0.63!6.37!GATA6;;chr20:50721803..50721857,-!p2@ZFP64!0.63!5.57!ZFP64;;chr19:57792157..57792170,+!p6@ZNF460!0.63!5.18!ZNF460;;chr11:65687222..65687240,+!p7@DRAP1!0.63!4.38!DRAP1;;chr12:115122005..115122016,-!p3@TBX3!0.63!3.98!TBX3;;chr5:137804484..137804498,+!p2@EGR1!0.62!14.73!EGR1;;chr5:139487608..139487663,+!p3@PURA!0.62!7.56!PURA;;chrX:66763815..66763854,+!p2@AR!0.62!4.38!AR;;chr18:52989001..52989030,-!p10@TCF4!0.62!3.58!TCF4;;chr2:121493717..121493755,+!p3@GLI2!0.62!3.58!GLI2;;chr2:176969097..176969109,+!p3@HOXD11!0.62!3.18!HOXD11;;chr2:176973498..176973524,+!p1@HOXD10!0.62!3.18!HOXD10;;chr3:25470062..25470084,+!p4@RARB!0.62!3.18!RARB;;chr12:66358080..66358094,+!p15@HMGA2!0.62!3.18!HMGA2;;chr6:106546731..106546755,+!p5@PRDM1!0.62!3.18!PRDM1;;chr1:170633058..170633084,+!p5@PRRX1!0.62!3.18!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.61!76.43!SNAI2;;chr15:60884706..60884743,-!p1@RORA!0.61!18.71!RORA;;chr11:65686732..65686756,+!p2@DRAP1!0.61!15.13!DRAP1;;chr10:63809134..63809145,+!p6@ARID5B!0.61!7.96!ARID5B;;chr1:151032739..151032748,+!p6@MLLT11!0.61!3.98!MLLT11;;chr15:96874012..96874042,+!p2@NR2F2!0.60!32.25!NR2F2;;chr10:63809013..63809041,+!p3@ARID5B!0.60!19.90!ARID5B;;chr2:66662281..66662308,+!p1@MEIS1!0.60!11.94!MEIS1;;chr20:39946361..39946379,-!p2@ZHX3!0.60!10.35!ZHX3;;chr22:38598057..38598071,+!p3@MAFF!0.60!7.96!MAFF;;chr17:46127997..46128015,+!p5@NFE2L1!0.60!4.38!NFE2L1;;chr18:52989565..52989623,-!p9@TCF4!0.60!3.98!TCF4;;chr6:34204921..34204939,+!p3@HMGA1!0.59!107.88!HMGA1;;chr5:134369905..134369972,-!p1@PITX1!0.59!4.78!PITX1;;chr8:72756213..72756243,-!p5@MSC!0.59!3.98!MSC;;chr5:92919375..92919438,+!p6@NR2F1!0.59!3.18!NR2F1;;chr14:62162224..62162254,+!p1@HIF1A!0.58!507.97!HIF1A;;chr2:28616337..28616355,+!p2@FOSL2!0.58!61.70!FOSL2;;chr6:21597765..21597779,+!p2@SOX4!0.58!27.87!SOX4;;chr14:62203749..62203798,+!p5@HIF1A!0.58!4.78!HIF1A;;chr6:10415276..10415341,-!p2@TFAP2A!0.58!3.58!TFAP2A;;chr7:27192185..27192209,-!p1@HOXA3!0.58!2.79!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.58!2.79!HOXA9;;chr22:21771656..21771662,+!p1@HIC2!0.58!2.79!HIC2;;chr2:177053386..177053402,+!p1@HOXD1!0.58!2.79!HOXD1;;chr2:19558327..19558334,-!p2@OSR1!0.58!2.79!OSR1;;chr3:138665774..138665786,-!p5@FOXL2!0.58!2.79!FOXL2;;chr3:141087562..141087594,+!p12@ZBTB38!0.58!2.79!ZBTB38;;chr16:51185172..51185197,-!p1@SALL1!0.58!2.79!SALL1;;chr18:52988979..52988993,-!p18@TCF4!0.58!2.79!TCF4;;chr10:119302645..119302712,+!p3@EMX2!0.58!2.79!EMX2;;chr12:54394309..54394336,+!p2@HOXC9!0.58!2.79!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.58!2.79!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.58!2.79!HMGA2;;chr12:6621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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor4.CNhs13096.11837-124H1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor4.CNhs13096.11837-124H1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor4.CNhs13096.11837-124H1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor4.CNhs13096.11837-124H1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11837-124H1
 |is_a=EFO:0002091;;FF:0000275
 |is_obsolete=
 |library_id=CNhs13096
+|library_id_phase_based=2:CNhs13096
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+|microRNAs_nn=
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11837
 |name=mesenchymal precursor cell - ovarian cancer right ovary, donor4
 |namespace=
@@ Line 49: / Line 60: @@
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-|profile_rnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11837-124H1;search_select_hide=table117:FF:11837-124H1
 }}

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FF:11837-124H1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:23, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0