FF:11904-125F5: Difference between revisions

Latest revision as of 18:28, 4 June 2020

Name:	immature langerhans cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13537
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	NA
age	NA
cell type	langerhans cell
cell line	NA
company	NA
collaboration	Teunis Geijtenbeek
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	LC-I
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005013

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13537		CAGE		DRX008543		DRR009415

Accession ID Hg19

Library id		BAM		CTSS
CNhs13537		DRZ000840		DRZ002225

Accession ID Hg38

Library id		BAM		CTSS
CNhs13537		DRZ012190		DRZ013575

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0881
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0608
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0.683
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.191
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0449
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0881
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0881
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.224
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.0881
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.273
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.424
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0807
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	1.046
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0672
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.0103
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.157
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.161
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0881
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.049
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0276
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0375
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.306
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.683
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.348
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.224
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.268
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.224
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.568
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0906
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.277
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.191
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.295
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.0881
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.224
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0881
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.193
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.11
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0.327
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.0881
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.161
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	1.133
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.0881
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13537

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.63753e-4
MA0003.1	MA0003.1	0.303
MA0004.1	MA0004.1	0.84
MA0006.1	MA0006.1	0.408
MA0007.1	MA0007.1	0.346
MA0009.1	MA0009.1	0.154
MA0014.1	MA0014.1	0.513
MA0017.1	MA0017.1	0.77
MA0018.2	MA0018.2	1.70956e-10
MA0019.1	MA0019.1	0.586
MA0024.1	MA0024.1	0.338
MA0025.1	MA0025.1	0.0114
MA0027.1	MA0027.1	0.953
MA0028.1	MA0028.1	0.913
MA0029.1	MA0029.1	0.24
MA0030.1	MA0030.1	0.809
MA0031.1	MA0031.1	0.649
MA0035.2	MA0035.2	0.496
MA0038.1	MA0038.1	0.334
MA0039.2	MA0039.2	0.127
MA0040.1	MA0040.1	0.797
MA0041.1	MA0041.1	0.971
MA0042.1	MA0042.1	0.844
MA0043.1	MA0043.1	1.41157e-5
MA0046.1	MA0046.1	0.461
MA0047.2	MA0047.2	0.531
MA0048.1	MA0048.1	0.789
MA0050.1	MA0050.1	0.608
MA0051.1	MA0051.1	0.571
MA0052.1	MA0052.1	0.295
MA0055.1	MA0055.1	0.679
MA0057.1	MA0057.1	0.141
MA0058.1	MA0058.1	0.888
MA0059.1	MA0059.1	0.334
MA0060.1	MA0060.1	0.0243
MA0061.1	MA0061.1	3.4221e-30
MA0062.2	MA0062.2	0.00573
MA0065.2	MA0065.2	0.875
MA0066.1	MA0066.1	0.656
MA0067.1	MA0067.1	1.65269e-8
MA0068.1	MA0068.1	0.338
MA0069.1	MA0069.1	0.416
MA0070.1	MA0070.1	0.0632
MA0071.1	MA0071.1	0.938
MA0072.1	MA0072.1	0.88
MA0073.1	MA0073.1	0.519
MA0074.1	MA0074.1	0.892
MA0076.1	MA0076.1	0.5
MA0077.1	MA0077.1	0.268
MA0078.1	MA0078.1	0.739
MA0079.2	MA0079.2	0.946
MA0080.2	MA0080.2	2.94005e-13
MA0081.1	MA0081.1	4.94492e-4
MA0083.1	MA0083.1	0.901
MA0084.1	MA0084.1	0.817
MA0087.1	MA0087.1	0.214
MA0088.1	MA0088.1	0.224
MA0090.1	MA0090.1	0.00346
MA0091.1	MA0091.1	0.756
MA0092.1	MA0092.1	0.843
MA0093.1	MA0093.1	0.828
MA0099.2	MA0099.2	5.51161e-22
MA0100.1	MA0100.1	0.789
MA0101.1	MA0101.1	2.09668e-34
MA0102.2	MA0102.2	0.0287
MA0103.1	MA0103.1	0.826
MA0104.2	MA0104.2	0.511
MA0105.1	MA0105.1	3.21911e-20
MA0106.1	MA0106.1	0.138
MA0107.1	MA0107.1	9.09012e-36
MA0108.2	MA0108.2	0.48
MA0111.1	MA0111.1	0.848
MA0112.2	MA0112.2	0.148
MA0113.1	MA0113.1	0.815
MA0114.1	MA0114.1	0.793
MA0115.1	MA0115.1	0.832
MA0116.1	MA0116.1	0.0333
MA0117.1	MA0117.1	0.00131
MA0119.1	MA0119.1	0.417
MA0122.1	MA0122.1	0.496
MA0124.1	MA0124.1	0.414
MA0125.1	MA0125.1	0.282
MA0131.1	MA0131.1	0.327
MA0135.1	MA0135.1	0.859
MA0136.1	MA0136.1	7.51311e-15
MA0137.2	MA0137.2	0.763
MA0138.2	MA0138.2	0.248
MA0139.1	MA0139.1	0.658
MA0140.1	MA0140.1	0.375
MA0141.1	MA0141.1	0.824
MA0142.1	MA0142.1	0.703
MA0143.1	MA0143.1	0.802
MA0144.1	MA0144.1	0.761
MA0145.1	MA0145.1	0.903
MA0146.1	MA0146.1	0.695
MA0147.1	MA0147.1	0.344
MA0148.1	MA0148.1	0.377
MA0149.1	MA0149.1	0.404
MA0150.1	MA0150.1	4.05598e-6
MA0152.1	MA0152.1	0.564
MA0153.1	MA0153.1	0.00171
MA0154.1	MA0154.1	0.00883
MA0155.1	MA0155.1	0.0107
MA0156.1	MA0156.1	1.81059e-5
MA0157.1	MA0157.1	0.476
MA0159.1	MA0159.1	0.921
MA0160.1	MA0160.1	0.0993
MA0162.1	MA0162.1	0.023
MA0163.1	MA0163.1	0.025
MA0164.1	MA0164.1	0.65
MA0258.1	MA0258.1	0.603
MA0259.1	MA0259.1	0.71

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13537

Novel motif	Logo	P-value
1	1	0.339
10	10	0.0186
100	100	0.358
101	101	0.561
102	102	0.657
103	103	0.0465
104	104	0.669
105	105	0.482
106	106	4.93165e-4
107	107	0.734
108	108	0.771
109	109	0.364
11	11	0.779
110	110	0.825
111	111	0.684
112	112	0.128
113	113	0.738
114	114	0.705
115	115	0.0642
116	116	0.412
117	117	0.12
118	118	0.322
119	119	0.887
12	12	0.506
120	120	0.71
121	121	0.265
122	122	0.176
123	123	0.67
124	124	0.582
125	125	0.329
126	126	0.0129
127	127	0.39
128	128	0.277
129	129	0.748
13	13	0.0101
130	130	0.938
131	131	0.722
132	132	0.0197
133	133	0.173
134	134	0.464
135	135	0.361
136	136	0.129
137	137	0.00102
138	138	0.791
139	139	0.549
14	14	0.975
140	140	0.0514
141	141	0.573
142	142	0.981
143	143	0.316
144	144	0.516
145	145	0.259
146	146	0.382
147	147	0.0796
148	148	0.00733
149	149	0.202
15	15	0.272
150	150	0.231
151	151	0.538
152	152	0.241
153	153	0.353
154	154	0.204
155	155	0.0541
156	156	0.521
157	157	0.456
158	158	0.144
159	159	0.298
16	16	0.806
160	160	0.258
161	161	0.669
162	162	0.0574
163	163	0.158
164	164	0.098
165	165	0.17
166	166	0.154
167	167	0.763
168	168	0.467
169	169	0.871
17	17	0.637
18	18	0.692
19	19	0.529
2	2	0.442
20	20	0.083
21	21	0.613
22	22	0.578
23	23	0.415
24	24	0.108
25	25	0.295
26	26	0.525
27	27	0.148
28	28	0.497
29	29	0.0775
3	3	0.482
30	30	0.703
31	31	0.549
32	32	0.00985
33	33	0.0901
34	34	0.549
35	35	0.356
36	36	0.281
37	37	0.199
38	38	0.739
39	39	0.793
4	4	0.679
40	40	0.703
41	41	0.223
42	42	0.543
43	43	0.261
44	44	0.412
45	45	0.952
46	46	0.75
47	47	0.702
48	48	0.814
49	49	0.283
5	5	0.542
50	50	0.987
51	51	0.529
52	52	0.165
53	53	0.948
54	54	0.884
55	55	0.908
56	56	0.579
57	57	0.867
58	58	0.18
59	59	0.573
6	6	0.805
60	60	0.131
61	61	0.942
62	62	0.264
63	63	0.866
64	64	0.737
65	65	0.856
66	66	0.732
67	67	0.934
68	68	0.0822
69	69	0.0151
7	7	0.21
70	70	0.585
71	71	0.0555
72	72	0.0183
73	73	0.247
74	74	0.115
75	75	0.183
76	76	0.0679
77	77	0.617
78	78	0.00608
79	79	0.773
8	8	0.396
80	80	0.97
81	81	0.489
82	82	0.605
83	83	0.0148
84	84	0.0632
85	85	0.243
86	86	0.0632
87	87	0.137
88	88	0.182
89	89	0.622
9	9	0.796
90	90	0.0312
91	91	0.5
92	92	0.395
93	93	0.39
94	94	0.161
95	95	0.26
96	96	0.267
97	97	0.581
98	98	0.531
99	99	8.16441e-5

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13537

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011135 human immature langerhans cells sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)
0000840 (immature conventional dendritic cell)
0001014 (CD1a-positive Langerhans cell)
0001016 (immature CD1a-positive Langerhans cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011135 (human immature langerhans cells sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005013
+|accession_numbers=CAGE;DRX008543;DRR009415;DRZ000840;DRZ002225;DRZ012190;DRZ013575
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453,CL:0000840,CL:0001014,CL:0001016
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.63!430.38!IRF8;;chr2:68592406..68592424,+!p1@PLEK!2.57!373.91!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.48!301.47!SPI1;;chr9:102584262..102584276,+!p1@NR4A3!2.45!600.46!NR4A3;;chr6:391743..391759,+!p1@IRF4!2.45!280.09!IRF4;;chr9:102584159..102584174,+!p2@NR4A3!2.33!368.73!NR4A3;;chr2:61108808..61108821,+!p3@REL!2.27!229.70!REL;;chr2:61108878..61108891,+!p5@REL!2.24!173.90!REL;;chr12:72056800..72056834,+!p1@THAP2!2.20!210.13!THAP2;;chr2:157189180..157189290,-!p1@NR4A2!2.14!675.15!NR4A2;;chr19:54041669..54041697,+!p2@ZNF331!2.14!136.33!ZNF331;;chr1:25291475..25291511,-!p2@RUNX3!2.12!130.26!RUNX3;;chr19:54058073..54058088,+!p1@ZNF331!2.05!112.26!ZNF331;;chr7:50344289..50344323,+!p1@IKZF1!2.05!112.26!IKZF1;;chr9:102584241..102584261,+!p4@NR4A3!2.02!158.83!NR4A3;;chr9:102584128..102584144,+!p3@NR4A3!1.99!180.65!NR4A3;;chr2:61108695..61108753,+!p1@REL!1.97!597.08!REL;;chr6:106534192..106534224,+!p1@PRDM1!1.96!246.80!PRDM1;;chr19:45971246..45971265,+!p1@FOSB!1.94!1489.55!FOSB;;chr7:50344251..50344288,+!p3@IKZF1!1.94!85.27!IKZF1;;chr9:102584278..102584285,+!p5@NR4A3!1.89!76.27!NR4A3;;chr11:47400062..47400077,-!p2@SPI1!1.86!71.32!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.85!70.19!PLEK;;chr10:35484053..35484076,+!p1@CREM!1.83!158.83!CREM;;chr6:106534230..106534254,+!p2@PRDM1!1.81!155.01!PRDM1;;chr2:61108771..61108789,+!p4@REL!1.80!91.79!REL;;chr1:157108130..157108173,-!p1@ETV3!1.78!403.38!ETV3;;chr10:104155659..104155676,+!p4@NFKB2!1.70!60.97!NFKB2;;chr7:28725715..28725727,+!p3@CREB5!1.64!49.49!CREB5;;chr12:72056773..72056796,+!p3@THAP2!1.62!52.19!THAP2;;chr16:31885093..31885165,+!p1@ZNF267!1.60!565.36!ZNF267;;chr8:53373491..53373506,-!p4@ST18!1.58!37.35!ST18;;chr2:8822176..8822196,+!p1@ID2!1.57!4808.82!ID2;;chr5:71803177..71803255,-!p1@ZNF366!1.57!36.22!ZNF366;;chr19:36391434..36391450,-!p1@NFKBID!1.56!67.49!NFKBID;;chr7:28725740..28725778,+!p1@CREB5!1.55!295.62!CREB5;;chr10:35484090..35484104,+!p6@CREM!1.53!33.07!CREM;;chr4:103422499..103422632,+!p1@NFKB1!1.51!621.38!NFKB1;;chr7:28448965..28448994,+!p2@CREB5!1.51!107.09!CREB5;;chr17:80797886..80797906,-!p1@ZNF750!1.51!31.72!ZNF750;;chr12:52445218..52445237,+!p1@NR4A1!1.50!371.66!NR4A1;;chr20:50159198..50159299,-!p1@NFATC2!1.49!42.75!NFATC2;;chr12:96649259..96649290,+!p9@ELK3!1.48!29.25!ELK3;;chr10:104154415..104154434,+!p5@NFKB2!1.47!28.57!NFKB2;;chr13:41593392..41593403,-!p7@ELF1!1.47!28.57!ELF1;;chr11:47399996..47400014,-!p4@SPI1!1.45!27.45!SPI1;;chr19:45252008..45252024,+!p2@BCL3!1.44!85.94!BCL3;;chr11:47399947..47399961,-!p3@SPI1!1.44!26.77!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.43!26.10!SPI1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.42!35.55!NFKBIZ;;chr10:104155480..104155534,+!p2@NFKB2!1.40!149.83!NFKB2;;chr12:54785074..54785122,-!p2@ZNF385A!1.39!35.77!ZNF385A;;chr1:157108746..157108762,-!p4@ETV3!1.39!23.62!ETV3;;chr22:38597987..38598021,+!p2@MAFF!1.37!133.41!MAFF;;chr12:72056749..72056767,+!p6@THAP2!1.37!24.75!THAP2;;chr14:35873947..35873965,-!p1@NFKBIA!1.36!1319.70!NFKBIA;;chr1:209979467..209979494,-!p1@IRF6!1.36!24.52!IRF6;;chr13:41593405..41593416,-!p9@ELF1!1.36!22.05!ELF1;;chr20:55204351..55204377,+!p1@TFAP2C!1.35!26.77!TFAP2C;;chr8:81397876..81397898,+!p5@ZBTB10!1.35!24.97!ZBTB10;;chr11:34642612..34642646,+!p1@EHF!1.35!21.37!EHF;;chr1:156470515..156470542,-!p2@MEF2D!1.34!107.09!MEF2D;;chr12:54778471..54778528,-!p1@ZNF385A!1.34!20.70!ZNF385A;;chr13:41593425..41593480,-!p1@ELF1!1.33!126.21!ELF1;;chr6:144385698..144385742,-!p2@PLAGL1!1.33!24.75!PLAGL1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.32!237.35!ZC3H12A;;chr12:54785054..54785072,-!p4@ZNF385A!1.30!21.37!ZNF385A;;chr4:106068026..106068084,+!p1@TET2!1.29!162.66!TET2;;chr3:5021268..5021282,+!p4@BHLHE40!1.29!37.57!BHLHE40;;chr6:44233252..44233296,-!p1@NFKBIE!1.28!175.25!NFKBIE;;chr1:25256756..25256774,-!p1@RUNX3!1.28!33.52!RUNX3;;chr19:50432132..50432217,+!p2@ATF5!1.28!21.60!ATF5;;chr3:39195037..39195069,-!p2@CSRNP1!1.27!106.86!CSRNP1;;chr2:157189317..157189325,-!p8@NR4A2!1.27!17.55!NR4A2;;chr9:102584329..102584341,+!p6@NR4A3!1.27!17.55!NR4A3;;chr8:22550982..22550999,-!p1@EGR3!1.26!47.47!EGR3;;chr12:26277817..26277863,-!p2@BHLHE41!1.26!23.17!BHLHE41;;chr19:50922187..50922204,+!p1@SPIB!1.26!17.10!SPIB;;chr2:70142232..70142251,+!p1@MXD1!1.25!93.81!MXD1;;chr7:104654690..104654704,+!p2@MLL5!1.25!33.07!MLL5;;chr4:57547454..57547469,-!p1@HOPX!1.25!16.65!HOPX;;chr20:62462566..62462631,-!p1@ZBTB46!1.24!30.82!ZBTB46;;chr6:106535598..106535637,+!p7@PRDM1!1.24!16.42!PRDM1;;chr11:47400045..47400060,-!p6@SPI1!1.24!16.42!SPI1;;chr19:38085978..38085996,-!p3@ZNF571!1.24!16.20!ZNF571;;chr1:212782094..212782109,+!p1@ATF3!1.22!416.43!ATF3;;chr12:26277956..26277980,-!p1@BHLHE41!1.22!55.12!BHLHE41;;chr8:123793988..123794016,+!p1@ZHX2!1.22!27.45!ZHX2;;chr7:104654718..104654741,+!p3@MLL5!1.22!22.72!MLL5;;chr3:5021113..5021180,+!p1@BHLHE40!1.21!1051.30!BHLHE40;;chr6:15246741..15246765,+!p9@JARID2!1.21!15.30!JARID2;;chr3:5022272..5022321,+!p7@BHLHE40!1.20!14.85!BHLHE40;;chr19:45251395..45251432,+!p8@BCL3!1.19!14.62!BCL3;;chr1:25256439..25256476,-!p3@RUNX3!1.19!14.40!RUNX3;;chr19:6110474..6110551,-!p1@RFX2!1.18!84.37!RFX2;;chr14:35872962..35873025,-!p3@NFKBIA!1.17!35.10!NFKBIA;;chr6:44355499..44355514,+!p3@CDC5L!1.16!14.62!CDC5L;;chr9:129567282..129567353,+!p1@ZBTB43!1.15!169.18!ZBTB43;;chr4:26322267..26322334,+!p3@RBPJ!1.15!31.95!RBPJ;;chr1:209979411..209979433,-!p2@IRF6!1.15!13.27!IRF6;;chr12:72056897..72056908,+!p12@THAP2!1.15!13.05!THAP2;;chr3:39195075..39195088,-!p1@CSRNP1!1.14!80.32!CSRNP1;;chr4:103422471..103422495,+!p2@NFKB1!1.14!35.32!NFKB1;;chr3:5021191..5021202,+!p3@BHLHE40!1.13!33.75!BHLHE40;;chr7:111846777..111846804,+!p2@ZNF277!1.13!14.62!ZNF277;;chr2:208394817..208394834,+!p3@CREB1!1.12!49.49!CREB1;;chr14:24020596..24020624,-!p3@ZFHX2!1.12!12.15!ZFHX2;;chr12:26277929..26277955,-!p3@BHLHE41!1.10!16.42!BHLHE41;;chr10:3827371..3827386,-!p2@KLF6!1.09!95.16!KLF6;;chr6:15246200..15246214,+!p2@JARID2!1.09!31.72!JARID2;;chr9:117150254..117150271,-!p1@AKNA!1.09!31.27!AKNA;;chr2:178128250..178128293,-!p6@NFE2L2!1.09!28.80!NFE2L2;;chr1:157108764..157108776,-!p7@ETV3!1.09!11.25!ETV3;;chr6:12012170..12012245,+!p1@HIVEP1!1.08!56.02!HIVEP1;;chr2:61108650..61108687,+!p2@REL!1.08!54.89!REL;;chr3:37217736..37217753,-!p2@LRRFIP2!1.08!46.79!LRRFIP2;;chr14:75745523..75745537,+!p1@FOS!1.07!1292.70!FOS;;chr22:38598086..38598105,+!p1@MAFF!1.07!115.64!MAFF;;chr10:35484804..35484902,+!p2@CREM!1.07!41.40!CREM;;chr7:28448995..28449011,+!p4@CREB5!1.07!15.30!CREB5;;chr2:208031943..208031978,-!p5@KLF7!1.07!14.40!KLF7;;chr2:178128199..178128245,-!p3@NFE2L2!1.06!56.92!NFE2L2;;chr6:91006518..91006570,-!p1@BACH2!1.06!24.52!BACH2;;chr17:40440225..40440268,+!p3@STAT5A!1.05!13.05!STAT5A;;chr19:54041645..54041661,+!p5@ZNF331!1.05!10.35!ZNF331;;chr18:77155922..77155939,+!p1@NFATC1!1.04!27.67!NFATC1;;chr19:53039233..53039247,+!p2@ZNF808!1.04!14.85!ZNF808;;chr1:25291461..25291472,-!p11@RUNX3!1.04!9.90!RUNX3;;chr2:48541789..48541874,+!p1@FOXN2!1.03!222.95!FOXN2;;chr8:81397820..81397836,+!p2@ZBTB10!1.03!12.15!ZBTB10;;chr8:53373515..53373526,-!p8@ST18!1.03!9.67!ST18;;chr19:38086030..38086048,-!p2@ZNF571!1.03!9.67!ZNF571;;chr9:110252035..110252057,-!p1@KLF4!1.02!153.66!KLF4;;chr5:321810..321877,+!p1@AHRR!1.02!30.82!AHRR;;chr14:35872926..35872951,-!p4@NFKBIA!1.02!13.50!NFKBIA;;chr12:52431016..52431071,+!p4@NR4A1!1.02!11.25!NR4A1;;chr7:50343634..50343717,+!p2@IKZF1!1.02!9.45!IKZF1;;chr4:26322616..26322652,+!p1@RBPJ!1.01!204.50!RBPJ;;chr3:63898321..63898396,+!p3@ATXN7!1.01!21.60!ATXN7;;chr7:28449015..28449024,+!p6@CREB5!1.01!9.22!CREB5;;chr16:29819630..29819645,+!p37@MAZ!1.01!9.22!MAZ;;chr15:50647274..50647336,-!p1@GABPB1!1.00!63.44!GABPB1;;chr14:35872453..35872485,-!p2@NFKBIA!1.00!22.72!NFKBIA;;chr1:156470494..156470505,-!p3@MEF2D!1.00!13.27!MEF2D;;chr17:38498594..38498661,+!p2@RARA!0.99!29.70!RARA;;chr1:157108282..157108347,-!p3@ETV3!0.99!18.67!ETV3;;chr16:88636875..88636886,+!p3@ZC3H18!0.99!12.37!ZC3H18;;chr11:65554528..65554546,+!p1@OVOL1!0.99!8.77!OVOL1;;chr2:28615716..28615733,+!p1@FOSL2!0.98!417.55!FOSL2;;chr20:47894569..47894799,-!p1@ZNFX1!0.98!233.97!ZNFX1;;chr12:124873357..124873401,-!p1@NCOR2!0.97!99.21!NCOR2;;chr14:89883509..89883587,-!p2@FOXN3!0.97!59.39!FOXN3;;chr10:104154246..104154347,+!p3@NFKB2!0.97!51.97!NFKB2;;chr1:157108180..157108193,-!p2@ETV3!0.97!45.89!ETV3;;chr8:81397846..81397860,+!p3@ZBTB10!0.97!10.57!ZBTB10;;chr4:103514596..103514605,+!p44@NFKB1!0.97!8.32!NFKB1;;chr2:10091815..10091864,+!p1@GRHL1!0.96!10.80!GRHL1;;chr7:27903656..27903678,-!p11@JAZF1!0.96!8.10!JAZF1;;chr19:36389729..36389751,-!p3@NFKBID!0.96!8.10!NFKBID;;chr2:169312725..169312810,+!p1@CERS6!0.95!197.08!CERS6;;chr6:12012249..12012266,+!p5@HIVEP1!0.95!13.95!HIVEP1;;chr2:169312600..169312606,+!p2@CERS6!0.95!12.60!CERS6;;chr1:24645832..24645853,+!p1@GRHL3!0.95!7.87!GRHL3;;chr1:24645921..24645973,+!p2@GRHL3!0.95!7.87!GRHL3;;chr3:170075436..170075520,+!p1@SKIL!0.94!172.78!SKIL;;chr6:126240463..126240489,+!p6@NCOA7!0.94!8.77!NCOA7;;chr7:115670804..115670825,-!p1@TFEC!0.94!7.65!TFEC;;chr4:103478257..103478273,+!p28@NFKB1!0.94!7.65!NFKB1;;chr19:38270528..38270545,-!p2@ZNF573!0.94!7.65!ZNF573;;chr1:157108728..157108744,-!p5@ETV3!0.94!7.65!ETV3;;chr6:15246261..15246312,+!p1@JARID2!0.93!191.45!JARID2;;chr1:120190786..120190915,-!p1@ZNF697!0.93!56.24!ZNF697;;chr19:45250948..45250998,+!p3@BCL3!0.93!19.35!BCL3;;chr15:90544532..90544563,+!p1@ZNF710!0.93!15.30!ZNF710;;chr7:44924939..44924993,-!p2@PURB!0.93!15.07!PURB;;chr1:6684918..6684936,+!p2@THAP3!0.93!9.22!THAP3;;chr2:157186630..157186686,-!p6@NR4A2!0.93!7.42!NR4A2;;chr2:238600998..238601013,+!p5@LRRFIP1!0.93!7.42!LRRFIP1;;chr7:17338324..17338341,+!p3@AHR!0.92!25.20!AHR;;chr12:12764995..12765017,+!p3@CREBL2!0.92!10.57!CREBL2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.91!388.98!NFKBIZ;;chr19:45504688..45504782,+!p1@RELB!0.91!45.67!RELB;;chr1:153895251..153895342,-!p2@GATAD2B!0.91!27.45!GATAD2B;;chr6:126240380..126240430,+!p2@NCOA7!0.91!19.35!NCOA7;;chr1:93812261..9381230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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000453;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000840;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0001014;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11904-125F5
 |is_a=EFO:0002091;;FF:0011135
 |is_obsolete=
+|library_id=CNhs13537
+|library_id_phase_based=2:CNhs13537
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11904
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11904
 |name=immature langerhans cells, donor1
 |namespace=
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13537,LSID1029,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 60: / Line 79: @@
 |rna_weight_ug=1.2736
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 81: / Line 101: @@
 |top_motifs=NFKB1_REL_RELA:2.6578241477;CREB1:2.54825868468;ATF5_CREB3:2.50487662999;HSF1,2:2.32388151032;FOXN1:2.29992511255;JUN:2.09523632546;ATF4:2.09466218661;NANOG{mouse}:2.01863221224;TLX2:1.98585492075;SPI1:1.62589858563;PAX2:1.56050380238;FOXP3:1.54094506879;FOSL2:1.48397540523;SPIB:1.48350992749;RUNX1..3:1.42662025206;DMAP1_NCOR{1,2}_SMARC:1.28984636052;TGIF1:1.28149331303;ATF2:1.26196255894;RFX2..5_RFXANK_RFXAP:1.17325116111;HIF1A:1.17160565276;GLI1..3:1.05569693326;FOS_FOS{B,L1}_JUN{B,D}:1.05114850891;HMX1:1.03568823659;NFE2L1:0.957370172476;BACH2:0.953163738115;VSX1,2:0.928800602254;TBX4,5:0.907907566217;ETS1,2:0.906882294936;POU5F1:0.881820314628;SREBF1,2:0.880819468848;NKX2-2,8:0.830751384138;FOX{F1,F2,J1}:0.786914184457;MAFB:0.754257232517;ATF6:0.721772835661;ELF1,2,4:0.693047578288;NFIL3:0.679423133682;STAT1,3:0.677248041132;TBP:0.66335070091;FOXQ1:0.601783191253;ESRRA:0.583431032283;ZEB1:0.557789534686;CDX1,2,4:0.542741970724;IRF1,2:0.526105547827;EP300:0.525080993656;AHR_ARNT_ARNT2:0.503909137782;NFATC1..3:0.500457674684;BPTF:0.496973451642;NFE2:0.479796635506;EGR1..3:0.420997619836;NKX6-1,2:0.419128439715;FOX{D1,D2}:0.412752530643;PAX6:0.410468000128;POU1F1:0.368130530132;MYB:0.367421847657;EN1,2:0.330742930556;HOXA9_MEIS1:0.292465023893;ZBTB16:0.284826477479;NFE2L2:0.28188244534;SNAI1..3:0.26620807142;NANOG:0.252809582937;POU2F1..3:0.241067549419;PAX3,7:0.234714057725;CUX2:0.193024024472;NKX3-1:0.176231802048;STAT5{A,B}:0.157839394287;IRF7:0.15541171206;FOXA2:0.0925103932118;CEBPA,B_DDIT3:0.0922297293742;SOX2:0.0863550623262;RORA:0.083388973047;POU3F1..4:0.0736517033435;MED-1{core}:0.0623145230109;ALX1:0.043908559981;E2F1..5:0.0411399443718;HBP1_HMGB_SSRP1_UBTF:0.0225513458728;PAX8:0.000990719537141;SOX17:-0.0349581655987;PPARG:-0.0711938354221;SMAD1..7,9:-0.0771757788933;TFDP1:-0.091122322026;STAT2,4,6:-0.0952160930266;AIRE:-0.102403626266;ZBTB6:-0.130116919932;HES1:-0.143850916482;SPZ1:-0.212588079711;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214230617139;MYFfamily:-0.217914528193;TFAP2{A,C}:-0.238366694187;FOXP1:-0.25351030248;MYOD1:-0.268625670175;MEF2{A,B,C,D}:-0.273242536004;ALX4:-0.274275517669;ZFP161:-0.282367743042;NKX2-1,4:-0.289785915455;NKX3-2:-0.29338688297;HNF4A_NR2F1,2:-0.303007332871;OCT4_SOX2{dimer}:-0.320211067503;ELK1,4_GABP{A,B1}:-0.339850602097;HOX{A5,B5}:-0.340119907573;RFX1:-0.350401118323;NFY{A,B,C}:-0.354514297578;XBP1:-0.36973807903;SRF:-0.387427002247;TP53:-0.388767712538;PAX1,9:-0.398051062461;GCM1,2:-0.400043312334;CDC5L:-0.404183861838;PAX4:-0.406724137985;BREu{core}:-0.408354460699;IKZF2:-0.414236476569;SP1:-0.433335090376;NFIX:-0.439150915752;LMO2:-0.474562838532;HLF:-0.49602763214;CRX:-0.496040386498;HNF1A:-0.506588154445;MZF1:-0.518371126688;HMGA1,2:-0.520086374859;MAZ:-0.540361012513;GATA6:-0.545040155276;LHX3,4:-0.553616358641;HAND1,2:-0.556294293729;PAX5:-0.5664352791;ZIC1..3:-0.592773197822;TAL1_TCF{3,4,12}:-0.610838869047;NKX2-3_NKX2-5:-0.62829215833;PITX1..3:-0.645536679012;MYBL2:-0.668574336263;NR3C1:-0.680800763547;ESR1:-0.724096383956;GFI1:-0.727612577823;ZNF148:-0.745758638031;NHLH1,2:-0.756798564864;RXRA_VDR{dimer}:-0.777936977711;EVI1:-0.780324085172;PRRX1,2:-0.782259809346;TFCP2:-0.827193523834;MTE{core}:-0.834971558643;SOX5:-0.838787305812;YY1:-0.862232991649;FOXO1,3,4:-0.865770917329;NR5A1,2:-0.902804382597;GTF2A1,2:-0.925340665651;TEAD1:-0.944622860919;SOX{8,9,10}:-0.951682054418;NR6A1:-0.953451477404;HIC1:-1.01762574642;AR:-1.02806621292;GFI1B:-1.08497279946;ONECUT1,2:-1.12095505684;NRF1:-1.12558879501;IKZF1:-1.13115719786;ZNF143:-1.13403556135;ARID5B:-1.13898846103;REST:-1.15312498726;POU6F1:-1.15372129536;GTF2I:-1.18846606837;TOPORS:-1.19300085696;FOXM1:-1.20902400059;PRDM1:-1.21187836784;HOX{A4,D4}:-1.2275389645;UFEwm:-1.2282311081;TLX1..3_NFIC{dimer}:-1.24284526586;FOX{I1,J2}:-1.24883473574;XCPE1{core}:-1.27371797816;EBF1:-1.27380113266;TFAP2B:-1.28251956042;MTF1:-1.28801698167;KLF4:-1.30081638555;ADNP_IRX_SIX_ZHX:-1.33019038329;FOXL1:-1.34117657551;PATZ1:-1.34589801124;TEF:-1.3730466976;GATA4:-1.39096656892;bHLH_family:-1.39663884457;RBPJ:-1.41009820565;RREB1:-1.44938251406;HOX{A6,A7,B6,B7}:-1.47782745819;ZNF384:-1.47897006037;NR1H4:-1.48868316554;FOXD3:-1.50263761374;LEF1_TCF7_TCF7L1,2:-1.52212644074;ZNF238:-1.56073258436;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.5630918707;GZF1:-1.68254241863;T:-1.74370365162;TFAP4:-1.77009894657;PBX1:-1.82039993493;PDX1:-1.89239819597;DBP:-1.98100329815;ZNF423:-2.22959281669;RXR{A,B,G}:-2.82674107891
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11904-125F5;search_select_hide=table117:FF:11904-125F5
 }}

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FF:11904-125F5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:28, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0