FF:13469-144I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005917 | ||
|ancestors_in_cell_lineage_facet= | |accession_numbers=CAGE;DRX008600;DRR009472;DRZ000897;DRZ002282;DRZ012247;DRZ013632 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000056,CL:0000255,CL:0000188,CL:0000737,CL:0000228,CL:0002372 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0200006 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor= control | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Myoblast%2520differentiation%2520to%2520myotubes%252c%2520day00%252c%2520control%2520donor1.CNhs13847.13469-144I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Myoblast%2520differentiation%2520to%2520myotubes%252c%2520day00%252c%2520control%2520donor1.CNhs13847.13469-144I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Myoblast%2520differentiation%2520to%2520myotubes%252c%2520day00%252c%2520control%2520donor1.CNhs13847.13469-144I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Myoblast%2520differentiation%2520to%2520myotubes%252c%2520day00%252c%2520control%2520donor1.CNhs13847.13469-144I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Myoblast%2520differentiation%2520to%2520myotubes%252c%2520day00%252c%2520control%2520donor1.CNhs13847.13469-144I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:13469-144I4 | |id=FF:13469-144I4 | ||
|is_a=FF:0000210;;FF:0200006 | |is_a=FF:0000210;;FF:0200006 | ||
|name=Myoblast differentiation to myotubes | |is_obsolete= | ||
|library_id=CNhs13847 | |||
|library_id_phase_based=2:CNhs13847 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13469 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13469 | |||
|name=Myoblast differentiation to myotubes | |||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
| Line 44: | Line 64: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.107594725493571,0.130811252172043,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231633847338657,0,0,0,0,0,-0.0979578962680575,0,0,0.252000267908222,0,0,0,0,0,0,0,0,0,0,0,0,0.239057140721071,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0248645105503151,0,0,0,-0.106997187876902,-0.211197402695869,0,0,0,0,-0.0980353512377064,0.054001228042647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.384956857687085,0,0,0,0.0754673972731775,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,0.13777798240152,0,-0.474086218752008,-0.143515142523472,0,0,0.0278154658288195,0,0,0,0,0,0,0,0,0,0.25683699073452,0,-0.0504125515893149,0,0,0,0,0,0.0794846267886774,0,-0.17425806114951,0.316612596609717,0,0,0,0,-0.270240669334324,0,-0.120879483793741,0.95806342038057,0.163345269584278,0.0532790195739705,0.329244360905903,0,0,0,0.0332175178012015,-0.432609425593738,0,0,0.0706985770916685,0.501317192036347,0,0,0.7027605285215,0,-0.516415225930642,-0.0604397418968705,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,0,0,0,0,0.335130465033783,0,0,0.536902949520213,-0.106527167791034,0,0.259464370781846,0,0.0825671306771715,0.0443696943930864,-0.451810063947238,-0.155512831673802,-0.147401849371139,0.194975138137237,0,0.157030340889851,0.194104134392916,0.00291370478126318,0.246110704492767,0.0440704728593112,0.118752948006357,-0.06644516089259,0,0,0,0.215232976269498,0,0,0.0956547733223762,-0.0399413302044862,0.135077642861389,0.156740395777468,0.0192977977503991,-0.0464202216327327,0.152945900386872,-0.457436452896595,0.051264677212575,0.352922726376734,0.146548341856603,0,0.047311041208477,0.0489575023418497,0.194464656399605,-0.0300566853795294,0,-0.099020604123896,-0.0683442610773682,0,0.0771551206623255,0.248760487995623,0,0.186914138381129,0.562274799243844,0,0,0.0552741941359234,0,0,0.198586563854759,-0.539492143030166,-0.232855561555545,0,0.0369418742991455,0.097435858392844,-0.00440133645301166,0,-0.258175185598976,-0.202170761610805,0.0562165755782731,0.0428389712975394,0,0.122016946937797,0.129767756549856,-0.0278104745168795,-0.422394805391737,-0.0584468268118252,-0.730471933775731,-0.708380651750326,-0.106997187876902,0.433518021567598,0.0691689149143473,0.296830025211797,0.179766257728813,0.257507279596876,0.361285457082464,-0.0274811210728605,0.122569652418988,0,0.0791236510252993,0,-0.283068287429275,0,-0.294196642867721,0.0453357363259096,-0.439289374580686,0.111130195891596,0,0.249215431981078,-0.403174080086889,0,0,-0.0577009074118026,0,-0.150367083334639,0.0248645105503151,-0.0191719990210465,0.0534889721643475,0,0.350971871725599,0,0,-0.0171794763000524,-0.235476037764389,0,0.109807286096538,0.217226711284573,-0.0184465533961449,0.268985784252151,0,0,0.704461118300737,0,0.384956857687085,-0.220971206130946,0.384956857687085,-0.0340138361594837,0.469234135576142,0,0.979672731441459,0,0,-0.177527765965176,0.384956857687085,0.257967080295061,0,0,-0.249881296598824,0.00907649319327086,0,0,0.722560477062898,0,0,0,0,0,0,0,0,0.123542550852521,0.0301235274706367,0,0.0674491461341691,0,0,0,0,0,-0.110803081130275,0,0.384956857687085,0.00439778260900714,-0.0968332978427447,-0.12301741567642,0,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,0.528039030745486,0.0826094491355767,0,0,0,0.108002456085294,0,0,0.384956857687085,0,0.148452271686388,0,0,0.0943066636425982,0,-0.0271602944634248,-0.0815818795468414,0,0.177578446120519,-0.0123337809008897,-0.0871624542906377,0,0,-0.261347131789888,0,0,-0.0555675581263199,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.0805971542764343,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,0.268778720820672,-0.365713511314605,0,0,0,0,0,0,0,0,-0.0864690819761574,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.261622504344085,0,0,0.107594725493571,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.0425199873380364,0,0,0,0,0,0,0,0.110123559480994,0,0,0,0,1.52750119825066,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0.91018910547678,0,0,0.288997450313498,0,0,0,0,0,0,0,0,0,0,0,0,0.292884743899575,0,0,0.165683953634807,0,0,0.147997687873225,0,0,-0.0401499237894994,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384956857687085,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.00490790324286541,-0.0907419709796052,0.207895538017324,0,0,0,0.138092856361088,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231633847338657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.58576948779915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421000758547574,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.300580225457058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.165547184828628,0,0,0,0,0.337319747026166,0,0,0,0,0,0,0.384956857687085,0.103280183812472,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332158879510645,0,0,0.0669283789641297,0,0,0,0,0,0,0,0,0,0,0,0,0.323636678536958,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.51027844195497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128396423852406,0.0754673972731775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.162245647263856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=144 | |rna_box=144 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=14.07 | |rna_weight_ug=14.07 | ||
|sample_age=3 years old | |sample_age=3 years old | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.69869872922512e-224!GO:0043226;organelle;7.70554373668666e-180!GO:0043229;intracellular organelle;1.44470841319381e-179!GO:0043231;intracellular membrane-bound organelle;5.49546554838319e-172!GO:0043227;membrane-bound organelle;1.2578882186529e-171!GO:0005737;cytoplasm;1.58605592809048e-162!GO:0044422;organelle part;2.26624448036135e-139!GO:0044446;intracellular organelle part;3.60941654062321e-138!GO:0044444;cytoplasmic part;4.30549119202753e-107!GO:0032991;macromolecular complex;1.89192933236216e-99!GO:0005515;protein binding;8.25768865913173e-81!GO:0030529;ribonucleoprotein complex;2.08756372660785e-77!GO:0005634;nucleus;2.14511872868792e-77!GO:0044237;cellular metabolic process;6.53180931995255e-75!GO:0043170;macromolecule metabolic process;1.41253916113494e-73!GO:0044238;primary metabolic process;1.98764345982932e-73!GO:0044428;nuclear part;2.84858622894272e-67!GO:0043233;organelle lumen;1.283508873254e-65!GO:0031974;membrane-enclosed lumen;1.283508873254e-65!GO:0003723;RNA binding;2.03439129173e-62!GO:0016043;cellular component organization and biogenesis;2.48321703209126e-55!GO:0043234;protein complex;2.76908527436476e-52!GO:0005739;mitochondrion;2.90886675375047e-49!GO:0005840;ribosome;6.3326969869295e-45!GO:0043228;non-membrane-bound organelle;2.72658921109614e-44!GO:0043232;intracellular non-membrane-bound organelle;2.72658921109614e-44!GO:0006396;RNA processing;1.35381391343024e-43!GO:0019538;protein metabolic process;5.53187265373497e-43!GO:0031981;nuclear lumen;1.05509509167759e-41!GO:0043283;biopolymer metabolic process;3.15403458875406e-41!GO:0006412;translation;4.85570589427465e-41!GO:0031090;organelle membrane;9.15749834897965e-41!GO:0003735;structural constituent of ribosome;3.58538903007795e-40!GO:0033036;macromolecule localization;7.05874262207642e-39!GO:0006996;organelle organization and biogenesis;5.20200920037191e-38!GO:0015031;protein transport;6.01359969029732e-38!GO:0044260;cellular macromolecule metabolic process;9.08018988490086e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.00421999695495e-37!GO:0016071;mRNA metabolic process;2.630285876282e-37!GO:0044267;cellular protein metabolic process;3.05163147923031e-37!GO:0006259;DNA metabolic process;2.03484582247229e-36!GO:0033279;ribosomal subunit;1.19808729771655e-35!GO:0010467;gene expression;1.96001413496449e-35!GO:0008104;protein localization;5.60860157059386e-35!GO:0045184;establishment of protein localization;1.03782969461953e-34!GO:0008380;RNA splicing;1.68457280108473e-34!GO:0044429;mitochondrial part;6.49595725609137e-34!GO:0005829;cytosol;1.36797668445984e-32!GO:0031967;organelle envelope;1.51645236762459e-32!GO:0046907;intracellular transport;2.14508742196984e-32!GO:0031975;envelope;3.00999556655645e-32!GO:0065003;macromolecular complex assembly;7.20952672577564e-32!GO:0006397;mRNA processing;7.57673076534134e-32!GO:0009059;macromolecule biosynthetic process;2.28983402335917e-31!GO:0022607;cellular component assembly;5.87946908522716e-29!GO:0009058;biosynthetic process;2.67644891651197e-28!GO:0044249;cellular biosynthetic process;1.14819383031525e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.69209037342515e-27!GO:0006886;intracellular protein transport;7.30998632803418e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.06270564031324e-26!GO:0007049;cell cycle;3.65260193731272e-26!GO:0005654;nucleoplasm;1.70041860347634e-25!GO:0000166;nucleotide binding;1.78816509573879e-23!GO:0005681;spliceosome;2.1164679967871e-23!GO:0005740;mitochondrial envelope;3.1798752572961e-22!GO:0016462;pyrophosphatase activity;4.90628017694573e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.7399638233388e-22!GO:0051641;cellular localization;8.32374151583632e-22!GO:0017111;nucleoside-triphosphatase activity;9.03858626158136e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;9.41839339093676e-22!GO:0051649;establishment of cellular localization;1.5173091808761e-21!GO:0003676;nucleic acid binding;3.84125177609352e-21!GO:0044445;cytosolic part;4.85115432052159e-21!GO:0044451;nucleoplasm part;5.94141967234895e-21!GO:0006457;protein folding;8.48321100971901e-21!GO:0005694;chromosome;1.19539107754273e-20!GO:0031966;mitochondrial membrane;1.23672956995265e-20!GO:0019866;organelle inner membrane;1.56679082920349e-20!GO:0000278;mitotic cell cycle;5.51001638272535e-20!GO:0006119;oxidative phosphorylation;5.72784880864116e-20!GO:0005743;mitochondrial inner membrane;3.55556347473729e-19!GO:0022402;cell cycle process;3.55556347473729e-19!GO:0015934;large ribosomal subunit;3.55556347473729e-19!GO:0044427;chromosomal part;2.33848491278128e-18!GO:0005730;nucleolus;2.4552490193637e-18!GO:0051276;chromosome organization and biogenesis;2.949499288799e-18!GO:0012505;endomembrane system;3.36040450557385e-18!GO:0044455;mitochondrial membrane part;3.49146464585688e-18!GO:0006974;response to DNA damage stimulus;6.7547225261761e-18!GO:0015935;small ribosomal subunit;1.64091472290869e-17!GO:0022618;protein-RNA complex assembly;1.74138734511345e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;5.40894716013227e-16!GO:0032553;ribonucleotide binding;5.8297812534064e-16!GO:0032555;purine ribonucleotide binding;5.8297812534064e-16!GO:0048770;pigment granule;6.83852267406451e-16!GO:0042470;melanosome;6.83852267406451e-16!GO:0017076;purine nucleotide binding;6.95763516828705e-16!GO:0008134;transcription factor binding;1.65243381918871e-15!GO:0016070;RNA metabolic process;1.79089651597937e-15!GO:0005524;ATP binding;2.01025969717152e-15!GO:0006260;DNA replication;2.22530990939321e-15!GO:0006281;DNA repair;2.28773072951672e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.65319932141022e-15!GO:0006323;DNA packaging;3.28472793487672e-15!GO:0032559;adenyl ribonucleotide binding;4.2863061690496e-15!GO:0005746;mitochondrial respiratory chain;5.26475159758386e-15!GO:0030554;adenyl nucleotide binding;8.52060745714955e-15!GO:0051082;unfolded protein binding;9.47200953751057e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.18445870470238e-14!GO:0003954;NADH dehydrogenase activity;1.18445870470238e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.18445870470238e-14!GO:0000087;M phase of mitotic cell cycle;1.80342750934549e-14!GO:0005794;Golgi apparatus;2.59840800995086e-14!GO:0031980;mitochondrial lumen;2.91113882083009e-14!GO:0005759;mitochondrial matrix;2.91113882083009e-14!GO:0007067;mitosis;3.02951269805031e-14!GO:0008135;translation factor activity, nucleic acid binding;4.00871375180261e-14!GO:0044265;cellular macromolecule catabolic process;4.50204625588164e-14!GO:0006512;ubiquitin cycle;5.25207795762922e-14!GO:0022403;cell cycle phase;7.0455699709654e-14!GO:0051301;cell division;7.1482110020549e-14!GO:0016887;ATPase activity;1.4353035702298e-13!GO:0043285;biopolymer catabolic process;1.4353035702298e-13!GO:0016874;ligase activity;1.47166170719983e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.83692368802709e-13!GO:0000785;chromatin;3.2641358033441e-13!GO:0042623;ATPase activity, coupled;4.82923591216846e-13!GO:0009719;response to endogenous stimulus;4.9765393302368e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;5.10260835048376e-13!GO:0006605;protein targeting;6.02684184322902e-13!GO:0005783;endoplasmic reticulum;8.17616548656641e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.4395364909333e-13!GO:0019941;modification-dependent protein catabolic process;1.05962717409475e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.05962717409475e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.30738310236564e-12!GO:0044257;cellular protein catabolic process;1.32890173972624e-12!GO:0006333;chromatin assembly or disassembly;1.46635274124347e-12!GO:0009057;macromolecule catabolic process;1.50186812879069e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.52749204775494e-12!GO:0000375;RNA splicing, via transesterification reactions;1.52749204775494e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.52749204775494e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.63884589484955e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.63884589484955e-12!GO:0042773;ATP synthesis coupled electron transport;1.63884589484955e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.63993323215624e-12!GO:0045271;respiratory chain complex I;1.63993323215624e-12!GO:0005747;mitochondrial respiratory chain complex I;1.63993323215624e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.85178573870279e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.71159677593142e-12!GO:0016604;nuclear body;5.17135147107986e-12!GO:0051186;cofactor metabolic process;6.04309121989739e-12!GO:0015630;microtubule cytoskeleton;6.58137892263328e-12!GO:0048193;Golgi vesicle transport;7.22133921248506e-12!GO:0005761;mitochondrial ribosome;1.09204395947619e-11!GO:0000313;organellar ribosome;1.09204395947619e-11!GO:0044432;endoplasmic reticulum part;1.21007868958035e-11!GO:0006913;nucleocytoplasmic transport;1.93570159277289e-11!GO:0043412;biopolymer modification;3.03329050750426e-11!GO:0030163;protein catabolic process;3.36510959140777e-11!GO:0003743;translation initiation factor activity;3.74576937514234e-11!GO:0000279;M phase;3.92166874591266e-11!GO:0051169;nuclear transport;3.9774375182482e-11!GO:0005635;nuclear envelope;4.90030146651826e-11!GO:0006413;translational initiation;6.15919482229827e-11!GO:0016192;vesicle-mediated transport;6.91581564573816e-11!GO:0044453;nuclear membrane part;8.03260960216008e-11!GO:0065004;protein-DNA complex assembly;9.14048086161125e-11!GO:0031965;nuclear membrane;1.29416317753045e-10!GO:0006366;transcription from RNA polymerase II promoter;1.81963930623444e-10!GO:0004386;helicase activity;2.68798147672971e-10!GO:0000074;regulation of progression through cell cycle;2.69130608689182e-10!GO:0042254;ribosome biogenesis and assembly;2.87222026527585e-10!GO:0051726;regulation of cell cycle;2.99662098356897e-10!GO:0048523;negative regulation of cellular process;5.47798683468363e-10!GO:0044248;cellular catabolic process;5.61755638797364e-10!GO:0006446;regulation of translational initiation;6.22597587157311e-10!GO:0003712;transcription cofactor activity;6.9514902487155e-10!GO:0006464;protein modification process;7.84768753588835e-10!GO:0043566;structure-specific DNA binding;9.20907906762204e-10!GO:0005793;ER-Golgi intermediate compartment;1.01450582362669e-09!GO:0005643;nuclear pore;1.15139297413953e-09!GO:0016607;nuclear speck;1.27776115835165e-09!GO:0006334;nucleosome assembly;1.48411214164852e-09!GO:0008639;small protein conjugating enzyme activity;1.54607845238371e-09!GO:0031497;chromatin assembly;1.79128037011365e-09!GO:0004842;ubiquitin-protein ligase activity;3.06176034188337e-09!GO:0043687;post-translational protein modification;5.65232585648361e-09!GO:0012501;programmed cell death;5.70030640744763e-09!GO:0008026;ATP-dependent helicase activity;5.70030640744763e-09!GO:0006403;RNA localization;8.90899785502498e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.48904982827098e-09!GO:0050657;nucleic acid transport;1.08952247160195e-08!GO:0051236;establishment of RNA localization;1.08952247160195e-08!GO:0050658;RNA transport;1.08952247160195e-08!GO:0006915;apoptosis;1.26358520896943e-08!GO:0006732;coenzyme metabolic process;1.34786573647909e-08!GO:0016568;chromatin modification;1.69925111309414e-08!GO:0003697;single-stranded DNA binding;1.92328304179986e-08!GO:0046930;pore complex;2.11853611089092e-08!GO:0009259;ribonucleotide metabolic process;2.24604105751389e-08!GO:0019787;small conjugating protein ligase activity;2.36177100326026e-08!GO:0008219;cell death;2.39370775096999e-08!GO:0016265;death;2.39370775096999e-08!GO:0048519;negative regulation of biological process;3.28846061304747e-08!GO:0008565;protein transporter activity;4.41313568442302e-08!GO:0009055;electron carrier activity;6.34990013872863e-08!GO:0006461;protein complex assembly;6.35529717583753e-08!GO:0009150;purine ribonucleotide metabolic process;6.44676285857799e-08!GO:0050794;regulation of cellular process;6.79375759874727e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.6221634856272e-08!GO:0017038;protein import;7.78153827993693e-08!GO:0006261;DNA-dependent DNA replication;7.80656921558097e-08!GO:0006163;purine nucleotide metabolic process;9.6469443845755e-08!GO:0009199;ribonucleoside triphosphate metabolic process;9.64752800612511e-08!GO:0030120;vesicle coat;1.10294873763924e-07!GO:0030662;coated vesicle membrane;1.10294873763924e-07!GO:0005788;endoplasmic reticulum lumen;1.17697372893056e-07!GO:0009141;nucleoside triphosphate metabolic process;1.20042860271925e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.38088698723353e-07!GO:0009260;ribonucleotide biosynthetic process;1.39520558244216e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.65357377692202e-07!GO:0031324;negative regulation of cellular metabolic process;1.65856621255492e-07!GO:0006364;rRNA processing;1.67625979699882e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.69349449159707e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.69349449159707e-07!GO:0000245;spliceosome assembly;2.02040631771779e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.26636428073586e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.26636428073586e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.26636428073586e-07!GO:0019829;cation-transporting ATPase activity;2.37185306862813e-07!GO:0051028;mRNA transport;2.38714313628237e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.58039641934868e-07!GO:0006164;purine nucleotide biosynthetic process;2.58567454447894e-07!GO:0016881;acid-amino acid ligase activity;2.72642015388477e-07!GO:0005819;spindle;2.91288691353794e-07!GO:0065002;intracellular protein transport across a membrane;3.21529407380485e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.3267882735986e-07!GO:0005667;transcription factor complex;3.41932877798403e-07!GO:0044431;Golgi apparatus part;3.65163806276341e-07!GO:0005789;endoplasmic reticulum membrane;4.42330861383963e-07!GO:0015986;ATP synthesis coupled proton transport;4.45807325820886e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.45807325820886e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.57290415873141e-07!GO:0016072;rRNA metabolic process;4.84914664265622e-07!GO:0005768;endosome;4.93175820003804e-07!GO:0043038;amino acid activation;5.04581767054403e-07!GO:0006418;tRNA aminoacylation for protein translation;5.04581767054403e-07!GO:0043039;tRNA aminoacylation;5.04581767054403e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.2992009971153e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.2992009971153e-07!GO:0007010;cytoskeleton organization and biogenesis;5.56677275588107e-07!GO:0006399;tRNA metabolic process;6.18631230526481e-07!GO:0046034;ATP metabolic process;6.23387716754405e-07!GO:0009060;aerobic respiration;7.6577719472129e-07!GO:0000775;chromosome, pericentric region;7.6935714017366e-07!GO:0005813;centrosome;8.4442154388268e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.81806610402682e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.49273904998857e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.49273904998857e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.30029468313388e-06!GO:0003714;transcription corepressor activity;1.39153674272583e-06!GO:0005815;microtubule organizing center;1.66400977953472e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.82227639085779e-06!GO:0032446;protein modification by small protein conjugation;1.98703038440099e-06!GO:0051329;interphase of mitotic cell cycle;2.53604271857479e-06!GO:0009892;negative regulation of metabolic process;2.99038543899895e-06!GO:0048475;coated membrane;3.13815523828319e-06!GO:0030117;membrane coat;3.13815523828319e-06!GO:0006793;phosphorus metabolic process;3.17682351353988e-06!GO:0006796;phosphate metabolic process;3.17682351353988e-06!GO:0006754;ATP biosynthetic process;3.2866386443991e-06!GO:0006753;nucleoside phosphate metabolic process;3.2866386443991e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.58006444206832e-06!GO:0000151;ubiquitin ligase complex;3.86954320323657e-06!GO:0031252;leading edge;3.87139059043131e-06!GO:0051170;nuclear import;4.0476122889222e-06!GO:0016567;protein ubiquitination;4.05039908305369e-06!GO:0006606;protein import into nucleus;6.05985696843847e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.90941547198145e-06!GO:0003924;GTPase activity;7.67653995166087e-06!GO:0045333;cellular respiration;9.45338668762531e-06!GO:0045259;proton-transporting ATP synthase complex;9.53466658493118e-06!GO:0003682;chromatin binding;9.89288744988599e-06!GO:0051246;regulation of protein metabolic process;1.01953276636654e-05!GO:0016787;hydrolase activity;1.02515753752076e-05!GO:0000075;cell cycle checkpoint;1.03051437199321e-05!GO:0051188;cofactor biosynthetic process;1.07955792499679e-05!GO:0007051;spindle organization and biogenesis;1.10536480491128e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.205753887721e-05!GO:0000786;nucleosome;1.26052555986573e-05!GO:0003724;RNA helicase activity;1.29869521060386e-05!GO:0006916;anti-apoptosis;1.37097535678914e-05!GO:0016481;negative regulation of transcription;1.43368037189897e-05!GO:0008092;cytoskeletal protein binding;1.46483957749441e-05!GO:0043069;negative regulation of programmed cell death;1.53495765826379e-05!GO:0016563;transcription activator activity;1.57559203961795e-05!GO:0051325;interphase;1.74600362997754e-05!GO:0016491;oxidoreductase activity;1.78589308213726e-05!GO:0000139;Golgi membrane;1.83110352935335e-05!GO:0045786;negative regulation of progression through cell cycle;2.05345824992262e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.16178948355118e-05!GO:0006099;tricarboxylic acid cycle;2.39352571049498e-05!GO:0046356;acetyl-CoA catabolic process;2.39352571049498e-05!GO:0005874;microtubule;2.4093127359268e-05!GO:0005769;early endosome;2.59752882437573e-05!GO:0051187;cofactor catabolic process;2.62293857051892e-05!GO:0016564;transcription repressor activity;2.64828719403274e-05!GO:0043066;negative regulation of apoptosis;2.84071662546464e-05!GO:0003690;double-stranded DNA binding;2.86575096607275e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.00308013985401e-05!GO:0050789;regulation of biological process;3.05195418262651e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.29273430422001e-05!GO:0016779;nucleotidyltransferase activity;3.3303929809387e-05!GO:0009056;catabolic process;3.35911506783497e-05!GO:0019899;enzyme binding;3.35911506783497e-05!GO:0042981;regulation of apoptosis;3.82392165091057e-05!GO:0005762;mitochondrial large ribosomal subunit;3.82392165091057e-05!GO:0000315;organellar large ribosomal subunit;3.82392165091057e-05!GO:0043067;regulation of programmed cell death;3.8520712884385e-05!GO:0044440;endosomal part;4.23985321627344e-05!GO:0010008;endosome membrane;4.23985321627344e-05!GO:0005798;Golgi-associated vesicle;4.25724733681501e-05!GO:0016310;phosphorylation;4.27787012219785e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.38692876704057e-05!GO:0016049;cell growth;4.39422243768088e-05!GO:0016859;cis-trans isomerase activity;4.39422243768088e-05!GO:0008361;regulation of cell size;4.82254246009438e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.95959177028454e-05!GO:0006613;cotranslational protein targeting to membrane;5.15324143653282e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.6895752561344e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.11454301057378e-05!GO:0031072;heat shock protein binding;6.34828085607119e-05!GO:0031988;membrane-bound vesicle;6.43863623486713e-05!GO:0009117;nucleotide metabolic process;7.40883196184017e-05!GO:0009109;coenzyme catabolic process;7.48679425072267e-05!GO:0007005;mitochondrion organization and biogenesis;7.64565817687097e-05!GO:0006084;acetyl-CoA metabolic process;7.71919754613885e-05!GO:0051789;response to protein stimulus;9.93959773771346e-05!GO:0006986;response to unfolded protein;9.93959773771346e-05!GO:0005048;signal sequence binding;0.000101122559896484!GO:0005657;replication fork;0.000102272565072293!GO:0006383;transcription from RNA polymerase III promoter;0.000103932808786616!GO:0008094;DNA-dependent ATPase activity;0.000116916971152923!GO:0003899;DNA-directed RNA polymerase activity;0.000117452819179624!GO:0005770;late endosome;0.000122104517094526!GO:0003729;mRNA binding;0.000131963765001709!GO:0006752;group transfer coenzyme metabolic process;0.000144024993298871!GO:0005839;proteasome core complex (sensu Eukaryota);0.000144271133045284!GO:0030867;rough endoplasmic reticulum membrane;0.000155787746444828!GO:0001558;regulation of cell growth;0.000177951678774869!GO:0016740;transferase activity;0.000186036918196813!GO:0043623;cellular protein complex assembly;0.000186128388115236!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000187294798499529!GO:0030029;actin filament-based process;0.000214497114564038!GO:0003713;transcription coactivator activity;0.000246737020005972!GO:0051168;nuclear export;0.000260776181431924!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000274161393440911!GO:0045454;cell redox homeostasis;0.000293936520209513!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000303668466576806!GO:0009108;coenzyme biosynthetic process;0.000305736565307944!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000348958153356563!GO:0006091;generation of precursor metabolites and energy;0.000359189698980074!GO:0031982;vesicle;0.000383511624148999!GO:0031410;cytoplasmic vesicle;0.000415787719656949!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000428278684209007!GO:0051427;hormone receptor binding;0.000444848847680245!GO:0008186;RNA-dependent ATPase activity;0.000461605091204538!GO:0008047;enzyme activator activity;0.000468108325104121!GO:0019867;outer membrane;0.000475390467372969!GO:0043021;ribonucleoprotein binding;0.000480082050577564!GO:0048522;positive regulation of cellular process;0.000488925203428344!GO:0000314;organellar small ribosomal subunit;0.000513347440925282!GO:0005763;mitochondrial small ribosomal subunit;0.000513347440925282!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000524913365401984!GO:0005885;Arp2/3 protein complex;0.000542452009564777!GO:0004298;threonine endopeptidase activity;0.000552129046343156!GO:0006402;mRNA catabolic process;0.000554609600181656!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000695762415663929!GO:0003684;damaged DNA binding;0.000724434106601356!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000755955338740145!GO:0015399;primary active transmembrane transporter activity;0.000755955338740145!GO:0016853;isomerase activity;0.000788612836069875!GO:0000776;kinetochore;0.000873374914127612!GO:0035257;nuclear hormone receptor binding;0.000894621871764029!GO:0031968;organelle outer membrane;0.000927017298605816!GO:0048471;perinuclear region of cytoplasm;0.000929211397380612!GO:0006302;double-strand break repair;0.000945487043145638!GO:0051252;regulation of RNA metabolic process;0.000958401276465112!GO:0005905;coated pit;0.00101604495074212!GO:0000792;heterochromatin;0.00102306527704581!GO:0003779;actin binding;0.00109892245528548!GO:0007052;mitotic spindle organization and biogenesis;0.0011429615024973!GO:0006338;chromatin remodeling;0.00118035597118883!GO:0008250;oligosaccharyl transferase complex;0.00118035597118883!GO:0004004;ATP-dependent RNA helicase activity;0.0012248503360157!GO:0019222;regulation of metabolic process;0.00127982249086414!GO:0044452;nucleolar part;0.00130543998962489!GO:0051052;regulation of DNA metabolic process;0.00134312517466554!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00134951372002156!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00136312327685534!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00146244370291542!GO:0008139;nuclear localization sequence binding;0.00150496770798996!GO:0005096;GTPase activator activity;0.00151577165743452!GO:0030132;clathrin coat of coated pit;0.00153434384607693!GO:0000082;G1/S transition of mitotic cell cycle;0.0015349771070162!GO:0030663;COPI coated vesicle membrane;0.00157268895839733!GO:0030126;COPI vesicle coat;0.00157268895839733!GO:0051920;peroxiredoxin activity;0.00161072553425394!GO:0005741;mitochondrial outer membrane;0.00164896995381657!GO:0003702;RNA polymerase II transcription factor activity;0.00168605623255927!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00176000061987949!GO:0004576;oligosaccharyl transferase activity;0.00204413060533902!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00208343925513088!GO:0032508;DNA duplex unwinding;0.00210966654823319!GO:0032392;DNA geometric change;0.00210966654823319!GO:0007093;mitotic cell cycle checkpoint;0.00210966654823319!GO:0043492;ATPase activity, coupled to movement of substances;0.00211990305324807!GO:0030137;COPI-coated vesicle;0.00224442991540724!GO:0030027;lamellipodium;0.00234901387929721!GO:0033116;ER-Golgi intermediate compartment membrane;0.00244479800144766!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00247442442601605!GO:0015631;tubulin binding;0.00254161773984606!GO:0045941;positive regulation of transcription;0.00256278719935831!GO:0015980;energy derivation by oxidation of organic compounds;0.00259636077956742!GO:0030133;transport vesicle;0.00263267451845476!GO:0005525;GTP binding;0.00268736688625567!GO:0030658;transport vesicle membrane;0.00280240528972661!GO:0018196;peptidyl-asparagine modification;0.00281673078900993!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00281673078900993!GO:0005856;cytoskeleton;0.00282924415153494!GO:0006401;RNA catabolic process;0.00289945981036898!GO:0042802;identical protein binding;0.0030544284760058!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00313000277745093!GO:0040008;regulation of growth;0.00320146418594301!GO:0016363;nuclear matrix;0.00324251192530817!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0032637628863396!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0032637628863396!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0032637628863396!GO:0006284;base-excision repair;0.0032732424500688!GO:0005876;spindle microtubule;0.00348037180244867!GO:0006268;DNA unwinding during replication;0.00354902592730103!GO:0007243;protein kinase cascade;0.00356328474357384!GO:0005773;vacuole;0.00360403892094476!GO:0000059;protein import into nucleus, docking;0.00360915621347707!GO:0001726;ruffle;0.00372507228643429!GO:0048500;signal recognition particle;0.00387621513065021!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00396598310639787!GO:0017166;vinculin binding;0.00417742481421511!GO:0016044;membrane organization and biogenesis;0.00436346751652412!GO:0007017;microtubule-based process;0.00442610247023436!GO:0045892;negative regulation of transcription, DNA-dependent;0.00447606605209027!GO:0007088;regulation of mitosis;0.00451178246358481!GO:0006612;protein targeting to membrane;0.00451178246358481!GO:0006607;NLS-bearing substrate import into nucleus;0.00462848630943052!GO:0043624;cellular protein complex disassembly;0.00466358263327029!GO:0019843;rRNA binding;0.00479925422032476!GO:0006950;response to stress;0.00512842049806413!GO:0000910;cytokinesis;0.00531613682447914!GO:0065007;biological regulation;0.00532334511530855!GO:0030880;RNA polymerase complex;0.00532334511530855!GO:0007050;cell cycle arrest;0.00535935863442805!GO:0040029;regulation of gene expression, epigenetic;0.00557801137847413!GO:0016272;prefoldin complex;0.00558512340783228!GO:0001952;regulation of cell-matrix adhesion;0.00573850320661305!GO:0004177;aminopeptidase activity;0.00584840342592729!GO:0006310;DNA recombination;0.00600605858146719!GO:0051087;chaperone binding;0.00608617940454558!GO:0004674;protein serine/threonine kinase activity;0.00627575715841089!GO:0006740;NADPH regeneration;0.00629184085650662!GO:0006098;pentose-phosphate shunt;0.00629184085650662!GO:0043488;regulation of mRNA stability;0.00631130566631561!GO:0043487;regulation of RNA stability;0.00631130566631561!GO:0048487;beta-tubulin binding;0.00666992563616692!GO:0043414;biopolymer methylation;0.00666992563616692!GO:0030660;Golgi-associated vesicle membrane;0.00674664100725734!GO:0008022;protein C-terminus binding;0.00677937886871626!GO:0030134;ER to Golgi transport vesicle;0.00685050199822535!GO:0044262;cellular carbohydrate metabolic process;0.00687632661045048!GO:0006354;RNA elongation;0.00698752442387965!GO:0003711;transcription elongation regulator activity;0.00698752442387965!GO:0051287;NAD binding;0.00732972918544024!GO:0008654;phospholipid biosynthetic process;0.0075897899528863!GO:0045893;positive regulation of transcription, DNA-dependent;0.0075949586452647!GO:0004527;exonuclease activity;0.00790660903552055!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00819943325048663!GO:0030659;cytoplasmic vesicle membrane;0.00823366850790009!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0084102414107142!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0084102414107142!GO:0019206;nucleoside kinase activity;0.00850250655924368!GO:0032259;methylation;0.00861756959074003!GO:0005791;rough endoplasmic reticulum;0.0087415559560119!GO:0008312;7S RNA binding;0.00875438842346275!GO:0016584;nucleosome positioning;0.00881276557968004!GO:0003678;DNA helicase activity;0.00896500310873994!GO:0032984;macromolecular complex disassembly;0.00898336198903506!GO:0005862;muscle thin filament tropomyosin;0.00918637511838354!GO:0043681;protein import into mitochondrion;0.00919036404027303!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00936665841503505!GO:0030127;COPII vesicle coat;0.00938757362186409!GO:0012507;ER to Golgi transport vesicle membrane;0.00938757362186409!GO:0005100;Rho GTPase activator activity;0.00944775755703123!GO:0065009;regulation of a molecular function;0.00948915812191047!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00964884555770337!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00976532434508171!GO:0015002;heme-copper terminal oxidase activity;0.00976532434508171!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00976532434508171!GO:0004129;cytochrome-c oxidase activity;0.00976532434508171!GO:0032561;guanyl ribonucleotide binding;0.00999419390269815!GO:0019001;guanyl nucleotide binding;0.00999419390269815!GO:0007346;regulation of progression through mitotic cell cycle;0.0101155776359653!GO:0009165;nucleotide biosynthetic process;0.010847744527523!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0108643113345528!GO:0022890;inorganic cation transmembrane transporter activity;0.010905554140166!GO:0051101;regulation of DNA binding;0.0114349675367359!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0114591890864329!GO:0000428;DNA-directed RNA polymerase complex;0.0114591890864329!GO:0031124;mRNA 3'-end processing;0.0117135030826298!GO:0030118;clathrin coat;0.0119277878677708!GO:0006611;protein export from nucleus;0.0120053754982248!GO:0006405;RNA export from nucleus;0.0120959633566961!GO:0000922;spindle pole;0.0122685700110358!GO:0007006;mitochondrial membrane organization and biogenesis;0.0123453469726644!GO:0006270;DNA replication initiation;0.012436959547854!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0125294510012056!GO:0045047;protein targeting to ER;0.0125294510012056!GO:0043241;protein complex disassembly;0.0126457209838946!GO:0016741;transferase activity, transferring one-carbon groups;0.0126472805526863!GO:0008168;methyltransferase activity;0.0126545725964309!GO:0030125;clathrin vesicle coat;0.0127595897802626!GO:0030665;clathrin coated vesicle membrane;0.0127595897802626!GO:0030176;integral to endoplasmic reticulum membrane;0.0131493803191867!GO:0000323;lytic vacuole;0.0133539814577239!GO:0005764;lysosome;0.0133539814577239!GO:0006891;intra-Golgi vesicle-mediated transport;0.0133855092362085!GO:0006275;regulation of DNA replication;0.0136640264847621!GO:0007569;cell aging;0.0140286160382978!GO:0006352;transcription initiation;0.014549625015274!GO:0008629;induction of apoptosis by intracellular signals;0.0145804061534319!GO:0035258;steroid hormone receptor binding;0.0150727599850536!GO:0044433;cytoplasmic vesicle part;0.0151476476779197!GO:0030032;lamellipodium biogenesis;0.0161974201010992!GO:0006289;nucleotide-excision repair;0.0162955786984645!GO:0000084;S phase of mitotic cell cycle;0.0163306532740699!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0165323024871787!GO:0006626;protein targeting to mitochondrion;0.0165323024871787!GO:0031901;early endosome membrane;0.0165843033844308!GO:0042770;DNA damage response, signal transduction;0.0167817683925166!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0170744822998158!GO:0030496;midbody;0.0170991341929278!GO:0007030;Golgi organization and biogenesis;0.0170998773254288!GO:0008154;actin polymerization and/or depolymerization;0.0171827141041656!GO:0031902;late endosome membrane;0.0172621890866981!GO:0022415;viral reproductive process;0.0172818803873968!GO:0006778;porphyrin metabolic process;0.0174877606417237!GO:0033013;tetrapyrrole metabolic process;0.0174877606417237!GO:0006220;pyrimidine nucleotide metabolic process;0.0179776971081146!GO:0015992;proton transport;0.018438728882271!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0188664253340592!GO:0006892;post-Golgi vesicle-mediated transport;0.019157001521731!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0195577957015504!GO:0002102;podosome;0.01956743905192!GO:0031529;ruffle organization and biogenesis;0.0201554762906671!GO:0007059;chromosome segregation;0.0204080336778282!GO:0048468;cell development;0.0210317472482908!GO:0030521;androgen receptor signaling pathway;0.0210342073005258!GO:0005684;U2-dependent spliceosome;0.0210376133169245!GO:0045045;secretory pathway;0.0214838731705221!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0216795172539057!GO:0008180;signalosome;0.0218125037390229!GO:0032200;telomere organization and biogenesis;0.0220957014854582!GO:0000723;telomere maintenance;0.0220957014854582!GO:0048518;positive regulation of biological process;0.022252977739769!GO:0031323;regulation of cellular metabolic process;0.0224390710470352!GO:0042168;heme metabolic process;0.0233037331174541!GO:0016126;sterol biosynthetic process;0.023470802527595!GO:0005869;dynactin complex;0.023470802527595!GO:0006818;hydrogen transport;0.0234942953008997!GO:0033673;negative regulation of kinase activity;0.023546980696098!GO:0006469;negative regulation of protein kinase activity;0.023546980696098!GO:0043284;biopolymer biosynthetic process;0.0235534682007388!GO:0048593;camera-type eye morphogenesis;0.0237084267041088!GO:0051128;regulation of cellular component organization and biogenesis;0.0238563485285665!GO:0043022;ribosome binding;0.0242740024225645!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0245846659151539!GO:0030041;actin filament polymerization;0.0247473440622603!GO:0000339;RNA cap binding;0.0250917582402636!GO:0000209;protein polyubiquitination;0.0253485362480977!GO:0006376;mRNA splice site selection;0.0265250336155941!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0265250336155941!GO:0046474;glycerophospholipid biosynthetic process;0.0265912362193493!GO:0031570;DNA integrity checkpoint;0.0269747963826193!GO:0042585;germinal vesicle;0.0270565030746026!GO:0007021;tubulin folding;0.0271472399292036!GO:0000118;histone deacetylase complex;0.0274362270262424!GO:0003746;translation elongation factor activity;0.0275853945455644!GO:0005875;microtubule associated complex;0.0278942561851034!GO:0006839;mitochondrial transport;0.0278942561851034!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0278942561851034!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0278942561851034!GO:0030911;TPR domain binding;0.0282131540147779!GO:0005801;cis-Golgi network;0.028569881827673!GO:0007264;small GTPase mediated signal transduction;0.0290804451770295!GO:0012506;vesicle membrane;0.0292706407870888!GO:0050178;phenylpyruvate tautomerase activity;0.0301111525233577!GO:0016311;dephosphorylation;0.0301457696941252!GO:0016408;C-acyltransferase activity;0.0305370687054642!GO:0030128;clathrin coat of endocytic vesicle;0.031100052220666!GO:0030669;clathrin-coated endocytic vesicle membrane;0.031100052220666!GO:0030122;AP-2 adaptor complex;0.031100052220666!GO:0006730;one-carbon compound metabolic process;0.0311552846436292!GO:0051098;regulation of binding;0.0312139175185068!GO:0005832;chaperonin-containing T-complex;0.03125031070834!GO:0051348;negative regulation of transferase activity;0.0313787072463883!GO:0031625;ubiquitin protein ligase binding;0.0314584443454818!GO:0042393;histone binding;0.0321751813992306!GO:0003756;protein disulfide isomerase activity;0.0321751813992306!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0321751813992306!GO:0000725;recombinational repair;0.0323904408617611!GO:0000724;double-strand break repair via homologous recombination;0.0323904408617611!GO:0000159;protein phosphatase type 2A complex;0.0329840862054415!GO:0005637;nuclear inner membrane;0.0335795586674886!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0343563796522049!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0347431027559283!GO:0010257;NADH dehydrogenase complex assembly;0.0347431027559283!GO:0033108;mitochondrial respiratory chain complex assembly;0.0347431027559283!GO:0006595;polyamine metabolic process;0.0350357334746564!GO:0030119;AP-type membrane coat adaptor complex;0.035158099472248!GO:0009262;deoxyribonucleotide metabolic process;0.0357135598442889!GO:0016581;NuRD complex;0.0360364077950302!GO:0006739;NADP metabolic process;0.0363504361139686!GO:0050681;androgen receptor binding;0.036407643310898!GO:0030308;negative regulation of cell growth;0.0366233371239861!GO:0031371;ubiquitin conjugating enzyme complex;0.0371076001273305!GO:0008601;protein phosphatase type 2A regulator activity;0.0373676795245095!GO:0045792;negative regulation of cell size;0.0394478857224167!GO:0005652;nuclear lamina;0.039738034980655!GO:0043189;H4/H2A histone acetyltransferase complex;0.039738034980655!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0397888873103636!GO:0031123;RNA 3'-end processing;0.0400540069482234!GO:0005938;cell cortex;0.0402406533672126!GO:0016791;phosphoric monoester hydrolase activity;0.0416095638639926!GO:0006350;transcription;0.0418393188874684!GO:0005881;cytoplasmic microtubule;0.0420022699059119!GO:0009225;nucleotide-sugar metabolic process;0.042799822352831!GO:0004239;methionyl aminopeptidase activity;0.0435386387228121!GO:0031589;cell-substrate adhesion;0.0435386387228121!GO:0043407;negative regulation of MAP kinase activity;0.0440120472756728!GO:0046426;negative regulation of JAK-STAT cascade;0.0441746107794368!GO:0007160;cell-matrix adhesion;0.0455866229518421!GO:0007004;telomere maintenance via telomerase;0.0456066360203067!GO:0006414;translational elongation;0.0458653813569127!GO:0006509;membrane protein ectodomain proteolysis;0.0458653813569127!GO:0033619;membrane protein proteolysis;0.0458653813569127!GO:0043433;negative regulation of transcription factor activity;0.0463762783280251!GO:0004003;ATP-dependent DNA helicase activity;0.0463762783280251!GO:0043596;nuclear replication fork;0.0464525211684998!GO:0030508;thiol-disulfide exchange intermediate activity;0.0466369825280805!GO:0022408;negative regulation of cell-cell adhesion;0.0474369658883879!GO:0006118;electron transport;0.0474899987614049!GO:0022411;cellular component disassembly;0.047759352489081!GO:0005099;Ras GTPase activator activity;0.0479252502726345!GO:0005784;translocon complex;0.0485520047294153!GO:0016197;endosome transport;0.0489687023792803!GO:0045334;clathrin-coated endocytic vesicle;0.0489687023792803!GO:0051272;positive regulation of cell motility;0.0490009246620555!GO:0040017;positive regulation of locomotion;0.0490009246620555!GO:0031577;spindle checkpoint;0.0494006861454623!GO:0006779;porphyrin biosynthetic process;0.0497553275000596!GO:0033014;tetrapyrrole biosynthetic process;0.0497553275000596!GO:0008283;cell proliferation;0.0498611072586764!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0499591003241152 | |||
|sample_id=13469 | |sample_id=13469 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 100: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|time= day00 | |||
|timecourse=Myoblast_to_myotube_(wt_and_DMD) | |||
|top_motifs=TFDP1:1.89856963808;PAX8:1.62016126467;VSX1,2:1.43753377083;NKX2-1,4:1.22846100682;SPZ1:1.18059145387;PDX1:1.14822026271;TFAP4:1.14485598029;TFAP2{A,C}:1.13090384768;HOX{A4,D4}:1.06979267821;TLX1..3_NFIC{dimer}:1.00028470519;LEF1_TCF7_TCF7L1,2:0.983029651897;NFIX:0.948128957041;PAX1,9:0.875659511033;POU1F1:0.862905818614;ZNF384:0.848743210514;POU6F1:0.846853910981;SRF:0.832346461061;TEAD1:0.832306250879;CDC5L:0.820687826483;HOX{A5,B5}:0.782424058761;GATA4:0.772139480589;NKX3-1:0.765455634911;NR6A1:0.734802481342;ADNP_IRX_SIX_ZHX:0.732125282456;GZF1:0.72897881842;MYBL2:0.71952066963;XBP1:0.716073929717;E2F1..5:0.710803682466;GFI1B:0.704375221257;POU5F1:0.691620771953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.665219279213;HBP1_HMGB_SSRP1_UBTF:0.665056195728;TAL1_TCF{3,4,12}:0.658482192558;TFAP2B:0.623486279832;SOX17:0.620357185262;MZF1:0.59783807752;GFI1:0.58068627353;NR3C1:0.568003173838;FOXD3:0.560859237115;NKX6-1,2:0.549688802309;ZNF238:0.546832414535;NHLH1,2:0.546593169474;SOX{8,9,10}:0.495664512017;HOX{A6,A7,B6,B7}:0.482501432966;NKX2-3_NKX2-5:0.47123078206;RORA:0.46799258413;EGR1..3:0.46711387626;PAX4:0.462697580489;MTF1:0.457671437072;HIC1:0.450104679371;GTF2A1,2:0.437685443588;NFATC1..3:0.435298079314;POU3F1..4:0.427135015925;KLF4:0.424698064309;PRDM1:0.422927697481;LHX3,4:0.416455829932;AR:0.397898443029;SOX2:0.397594078796;NR5A1,2:0.376827138042;ZFP161:0.362087832062;PRRX1,2:0.361477353832;GCM1,2:0.349643398442;TBX4,5:0.342015462503;NFE2L2:0.3393949418;FOSL2:0.333070841417;GTF2I:0.328853581988;TFCP2:0.32800740858;AHR_ARNT_ARNT2:0.299346400358;FOS_FOS{B,L1}_JUN{B,D}:0.281339144432;MTE{core}:0.269890565055;ALX1:0.262769144462;MEF2{A,B,C,D}:0.259843546333;EN1,2:0.235520050447;EVI1:0.206112556071;HSF1,2:0.195215021301;RFX1:0.17602663817;JUN:0.172240188357;GLI1..3:0.158131296853;HOXA9_MEIS1:0.148273032364;DMAP1_NCOR{1,2}_SMARC:0.145240452296;NFIL3:0.144018051762;CDX1,2,4:0.139037031145;BACH2:0.138969408122;BREu{core}:0.130702007369;CUX2:0.130642108112;MED-1{core}:0.130297223201;PBX1:0.120190774644;HNF1A:0.117558380323;CREB1:0.116090436069;RUNX1..3:0.113843248645;NRF1:0.065002395393;MYFfamily:0.0518722862867;MAZ:0.0510232344968;PPARG:0.0316367669214;TBP:0.0270316961337;HES1:0.0167671469549;FOXA2:0.00370975662904;NFE2:0.000531981769745;ATF6:-0.00959715843629;ZBTB6:-0.0111879628477;STAT2,4,6:-0.0148607252273;ZNF148:-0.01628383406;REST:-0.023311300532;RXR{A,B,G}:-0.024701761489;HNF4A_NR2F1,2:-0.0253162679424;PATZ1:-0.0336231249589;ZNF143:-0.0374688883707;PAX3,7:-0.0550549728123;MYB:-0.059037618476;ZIC1..3:-0.066719414247;NANOG{mouse}:-0.0715307512227;NFE2L1:-0.0749399921209;RREB1:-0.078156650156;SMAD1..7,9:-0.0881781375427;PAX6:-0.103891217885;T:-0.104911737981;HLF:-0.105517317374;RFX2..5_RFXANK_RFXAP:-0.110460905229;PITX1..3:-0.114686070958;POU2F1..3:-0.1171092422;TGIF1:-0.129774230842;ONECUT1,2:-0.130720996106;FOXQ1:-0.133783999198;EBF1:-0.141004823111;GATA6:-0.142239157628;NFY{A,B,C}:-0.152213642602;ALX4:-0.15272455523;HAND1,2:-0.179424009605;STAT5{A,B}:-0.187073435079;RXRA_VDR{dimer}:-0.217261256712;TP53:-0.231773890931;SREBF1,2:-0.235577140498;ZBTB16:-0.237448427982;DBP:-0.249183474998;NR1H4:-0.249247022401;CEBPA,B_DDIT3:-0.257016707543;MAFB:-0.288689058761;CRX:-0.307177980075;XCPE1{core}:-0.327550089022;ZNF423:-0.346743001445;NFKB1_REL_RELA:-0.360679054645;FOXO1,3,4:-0.383384675623;HMGA1,2:-0.390455252776;ESRRA:-0.395060654534;OCT4_SOX2{dimer}:-0.396381445804;IKZF1:-0.421172704069;IKZF2:-0.429629454119;SPIB:-0.437721526994;NANOG:-0.446394329188;IRF1,2:-0.451106865018;IRF7:-0.456418872036;ESR1:-0.46954647759;ETS1,2:-0.491011315717;SOX5:-0.491558719608;FOX{F1,F2,J1}:-0.522369406268;PAX5:-0.522857863683;SPI1:-0.525478333858;NKX3-2:-0.548355791856;UFEwm:-0.550278224169;LMO2:-0.578799488183;PAX2:-0.61254460971;ATF5_CREB3:-0.619661934575;HMX1:-0.63255983154;bHLH_family:-0.637078557737;FOXL1:-0.648098744478;FOXP3:-0.654397225454;SP1:-0.655061070144;ATF2:-0.664965541517;ELK1,4_GABP{A,B1}:-0.66789876379;AIRE:-0.67910407151;ELF1,2,4:-0.7007750003;FOX{I1,J2}:-0.738753633407;FOX{D1,D2}:-0.740712898543;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.747096089992;TLX2:-0.747542389551;ZEB1:-0.765725959467;ATF4:-0.768632370075;FOXN1:-0.771298445866;MYOD1:-0.827986121122;YY1:-0.833305591566;SNAI1..3:-0.868867124884;HIF1A:-0.887300714656;FOXP1:-0.909876929442;FOXM1:-0.962700056335;STAT1,3:-0.969337924819;BPTF:-0.970227966435;ARID5B:-0.970966808869;NKX2-2,8:-0.981137292406;TEF:-1.02228248004;TOPORS:-1.04138959857;RBPJ:-1.07822938386;EP300:-1.15783808773 | |top_motifs=TFDP1:1.89856963808;PAX8:1.62016126467;VSX1,2:1.43753377083;NKX2-1,4:1.22846100682;SPZ1:1.18059145387;PDX1:1.14822026271;TFAP4:1.14485598029;TFAP2{A,C}:1.13090384768;HOX{A4,D4}:1.06979267821;TLX1..3_NFIC{dimer}:1.00028470519;LEF1_TCF7_TCF7L1,2:0.983029651897;NFIX:0.948128957041;PAX1,9:0.875659511033;POU1F1:0.862905818614;ZNF384:0.848743210514;POU6F1:0.846853910981;SRF:0.832346461061;TEAD1:0.832306250879;CDC5L:0.820687826483;HOX{A5,B5}:0.782424058761;GATA4:0.772139480589;NKX3-1:0.765455634911;NR6A1:0.734802481342;ADNP_IRX_SIX_ZHX:0.732125282456;GZF1:0.72897881842;MYBL2:0.71952066963;XBP1:0.716073929717;E2F1..5:0.710803682466;GFI1B:0.704375221257;POU5F1:0.691620771953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.665219279213;HBP1_HMGB_SSRP1_UBTF:0.665056195728;TAL1_TCF{3,4,12}:0.658482192558;TFAP2B:0.623486279832;SOX17:0.620357185262;MZF1:0.59783807752;GFI1:0.58068627353;NR3C1:0.568003173838;FOXD3:0.560859237115;NKX6-1,2:0.549688802309;ZNF238:0.546832414535;NHLH1,2:0.546593169474;SOX{8,9,10}:0.495664512017;HOX{A6,A7,B6,B7}:0.482501432966;NKX2-3_NKX2-5:0.47123078206;RORA:0.46799258413;EGR1..3:0.46711387626;PAX4:0.462697580489;MTF1:0.457671437072;HIC1:0.450104679371;GTF2A1,2:0.437685443588;NFATC1..3:0.435298079314;POU3F1..4:0.427135015925;KLF4:0.424698064309;PRDM1:0.422927697481;LHX3,4:0.416455829932;AR:0.397898443029;SOX2:0.397594078796;NR5A1,2:0.376827138042;ZFP161:0.362087832062;PRRX1,2:0.361477353832;GCM1,2:0.349643398442;TBX4,5:0.342015462503;NFE2L2:0.3393949418;FOSL2:0.333070841417;GTF2I:0.328853581988;TFCP2:0.32800740858;AHR_ARNT_ARNT2:0.299346400358;FOS_FOS{B,L1}_JUN{B,D}:0.281339144432;MTE{core}:0.269890565055;ALX1:0.262769144462;MEF2{A,B,C,D}:0.259843546333;EN1,2:0.235520050447;EVI1:0.206112556071;HSF1,2:0.195215021301;RFX1:0.17602663817;JUN:0.172240188357;GLI1..3:0.158131296853;HOXA9_MEIS1:0.148273032364;DMAP1_NCOR{1,2}_SMARC:0.145240452296;NFIL3:0.144018051762;CDX1,2,4:0.139037031145;BACH2:0.138969408122;BREu{core}:0.130702007369;CUX2:0.130642108112;MED-1{core}:0.130297223201;PBX1:0.120190774644;HNF1A:0.117558380323;CREB1:0.116090436069;RUNX1..3:0.113843248645;NRF1:0.065002395393;MYFfamily:0.0518722862867;MAZ:0.0510232344968;PPARG:0.0316367669214;TBP:0.0270316961337;HES1:0.0167671469549;FOXA2:0.00370975662904;NFE2:0.000531981769745;ATF6:-0.00959715843629;ZBTB6:-0.0111879628477;STAT2,4,6:-0.0148607252273;ZNF148:-0.01628383406;REST:-0.023311300532;RXR{A,B,G}:-0.024701761489;HNF4A_NR2F1,2:-0.0253162679424;PATZ1:-0.0336231249589;ZNF143:-0.0374688883707;PAX3,7:-0.0550549728123;MYB:-0.059037618476;ZIC1..3:-0.066719414247;NANOG{mouse}:-0.0715307512227;NFE2L1:-0.0749399921209;RREB1:-0.078156650156;SMAD1..7,9:-0.0881781375427;PAX6:-0.103891217885;T:-0.104911737981;HLF:-0.105517317374;RFX2..5_RFXANK_RFXAP:-0.110460905229;PITX1..3:-0.114686070958;POU2F1..3:-0.1171092422;TGIF1:-0.129774230842;ONECUT1,2:-0.130720996106;FOXQ1:-0.133783999198;EBF1:-0.141004823111;GATA6:-0.142239157628;NFY{A,B,C}:-0.152213642602;ALX4:-0.15272455523;HAND1,2:-0.179424009605;STAT5{A,B}:-0.187073435079;RXRA_VDR{dimer}:-0.217261256712;TP53:-0.231773890931;SREBF1,2:-0.235577140498;ZBTB16:-0.237448427982;DBP:-0.249183474998;NR1H4:-0.249247022401;CEBPA,B_DDIT3:-0.257016707543;MAFB:-0.288689058761;CRX:-0.307177980075;XCPE1{core}:-0.327550089022;ZNF423:-0.346743001445;NFKB1_REL_RELA:-0.360679054645;FOXO1,3,4:-0.383384675623;HMGA1,2:-0.390455252776;ESRRA:-0.395060654534;OCT4_SOX2{dimer}:-0.396381445804;IKZF1:-0.421172704069;IKZF2:-0.429629454119;SPIB:-0.437721526994;NANOG:-0.446394329188;IRF1,2:-0.451106865018;IRF7:-0.456418872036;ESR1:-0.46954647759;ETS1,2:-0.491011315717;SOX5:-0.491558719608;FOX{F1,F2,J1}:-0.522369406268;PAX5:-0.522857863683;SPI1:-0.525478333858;NKX3-2:-0.548355791856;UFEwm:-0.550278224169;LMO2:-0.578799488183;PAX2:-0.61254460971;ATF5_CREB3:-0.619661934575;HMX1:-0.63255983154;bHLH_family:-0.637078557737;FOXL1:-0.648098744478;FOXP3:-0.654397225454;SP1:-0.655061070144;ATF2:-0.664965541517;ELK1,4_GABP{A,B1}:-0.66789876379;AIRE:-0.67910407151;ELF1,2,4:-0.7007750003;FOX{I1,J2}:-0.738753633407;FOX{D1,D2}:-0.740712898543;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.747096089992;TLX2:-0.747542389551;ZEB1:-0.765725959467;ATF4:-0.768632370075;FOXN1:-0.771298445866;MYOD1:-0.827986121122;YY1:-0.833305591566;SNAI1..3:-0.868867124884;HIF1A:-0.887300714656;FOXP1:-0.909876929442;FOXM1:-0.962700056335;STAT1,3:-0.969337924819;BPTF:-0.970227966435;ARID5B:-0.970966808869;NKX2-2,8:-0.981137292406;TEF:-1.02228248004;TOPORS:-1.04138959857;RBPJ:-1.07822938386;EP300:-1.15783808773 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13469-144I4;search_select_hide=table117:FF:13469-144I4 | |||
}} | }} | ||
Latest revision as of 19:00, 4 June 2020
| Name: | Myoblast differentiation to myotubes |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13847 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13847
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13847
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.741 |
| 10 | 10 | 0.149 |
| 100 | 100 | 0.0269 |
| 101 | 101 | 0.892 |
| 102 | 102 | 0.358 |
| 103 | 103 | 0.102 |
| 104 | 104 | 0.329 |
| 105 | 105 | 0.881 |
| 106 | 106 | 0.376 |
| 107 | 107 | 0.113 |
| 108 | 108 | 0.955 |
| 109 | 109 | 0.252 |
| 11 | 11 | 0.741 |
| 110 | 110 | 0.805 |
| 111 | 111 | 0.835 |
| 112 | 112 | 0.0881 |
| 113 | 113 | 0.388 |
| 114 | 114 | 0.752 |
| 115 | 115 | 0.102 |
| 116 | 116 | 0.547 |
| 117 | 117 | 0.0842 |
| 118 | 118 | 0.0107 |
| 119 | 119 | 0.865 |
| 12 | 12 | 0.46 |
| 120 | 120 | 0.396 |
| 121 | 121 | 1 |
| 122 | 122 | 0.477 |
| 123 | 123 | 0.451 |
| 124 | 124 | 0.286 |
| 125 | 125 | 0.554 |
| 126 | 126 | 0.934 |
| 127 | 127 | 0.864 |
| 128 | 128 | 0.666 |
| 129 | 129 | 0.534 |
| 13 | 13 | 0.0604 |
| 130 | 130 | 9.96202e-4 |
| 131 | 131 | 0.993 |
| 132 | 132 | 0.0717 |
| 133 | 133 | 0.743 |
| 134 | 134 | 0.546 |
| 135 | 135 | 0.388 |
| 136 | 136 | 0.112 |
| 137 | 137 | 0.974 |
| 138 | 138 | 0.929 |
| 139 | 139 | 0.0436 |
| 14 | 14 | 0.931 |
| 140 | 140 | 0.292 |
| 141 | 141 | 0.284 |
| 142 | 142 | 0.309 |
| 143 | 143 | 0.233 |
| 144 | 144 | 0.966 |
| 145 | 145 | 0.421 |
| 146 | 146 | 0.0881 |
| 147 | 147 | 0.0321 |
| 148 | 148 | 0.661 |
| 149 | 149 | 0.927 |
| 15 | 15 | 0.521 |
| 150 | 150 | 0.747 |
| 151 | 151 | 0.655 |
| 152 | 152 | 0.603 |
| 153 | 153 | 0.998 |
| 154 | 154 | 0.847 |
| 155 | 155 | 0.0792 |
| 156 | 156 | 0.468 |
| 157 | 157 | 0.193 |
| 158 | 158 | 0.806 |
| 159 | 159 | 0.804 |
| 16 | 16 | 0.841 |
| 160 | 160 | 0.433 |
| 161 | 161 | 0.0473 |
| 162 | 162 | 0.0733 |
| 163 | 163 | 0.658 |
| 164 | 164 | 0.0045 |
| 165 | 165 | 0.916 |
| 166 | 166 | 0.512 |
| 167 | 167 | 0.825 |
| 168 | 168 | 0.151 |
| 169 | 169 | 0.395 |
| 17 | 17 | 0.294 |
| 18 | 18 | 0.885 |
| 19 | 19 | 0.892 |
| 2 | 2 | 0.311 |
| 20 | 20 | 0.091 |
| 21 | 21 | 0.373 |
| 22 | 22 | 0.971 |
| 23 | 23 | 0.202 |
| 24 | 24 | 0.459 |
| 25 | 25 | 0.843 |
| 26 | 26 | 0.772 |
| 27 | 27 | 0.933 |
| 28 | 28 | 0.601 |
| 29 | 29 | 0.0254 |
| 3 | 3 | 0.131 |
| 30 | 30 | 0.214 |
| 31 | 31 | 0.544 |
| 32 | 32 | 0.994 |
| 33 | 33 | 0.227 |
| 34 | 34 | 0.679 |
| 35 | 35 | 0.578 |
| 36 | 36 | 0.134 |
| 37 | 37 | 0.0297 |
| 38 | 38 | 0.908 |
| 39 | 39 | 0.439 |
| 4 | 4 | 0.882 |
| 40 | 40 | 0.0264 |
| 41 | 41 | 0.399 |
| 42 | 42 | 0.723 |
| 43 | 43 | 0.966 |
| 44 | 44 | 0.0869 |
| 45 | 45 | 0.733 |
| 46 | 46 | 0.629 |
| 47 | 47 | 0.171 |
| 48 | 48 | 0.119 |
| 49 | 49 | 0.786 |
| 5 | 5 | 0.509 |
| 50 | 50 | 0.661 |
| 51 | 51 | 0.582 |
| 52 | 52 | 0.982 |
| 53 | 53 | 0.449 |
| 54 | 54 | 0.279 |
| 55 | 55 | 0.0687 |
| 56 | 56 | 0.524 |
| 57 | 57 | 0.41 |
| 58 | 58 | 0.534 |
| 59 | 59 | 0.334 |
| 6 | 6 | 0.115 |
| 60 | 60 | 0.518 |
| 61 | 61 | 0.525 |
| 62 | 62 | 0.629 |
| 63 | 63 | 0.843 |
| 64 | 64 | 0.353 |
| 65 | 65 | 0.659 |
| 66 | 66 | 0.09 |
| 67 | 67 | 0.538 |
| 68 | 68 | 0.782 |
| 69 | 69 | 0.279 |
| 7 | 7 | 0.915 |
| 70 | 70 | 0.392 |
| 71 | 71 | 0.162 |
| 72 | 72 | 0.576 |
| 73 | 73 | 0.394 |
| 74 | 74 | 0.421 |
| 75 | 75 | 0.00537 |
| 76 | 76 | 0.328 |
| 77 | 77 | 0.575 |
| 78 | 78 | 0.0911 |
| 79 | 79 | 0.619 |
| 8 | 8 | 0.972 |
| 80 | 80 | 0.0605 |
| 81 | 81 | 0.861 |
| 82 | 82 | 0.205 |
| 83 | 83 | 0.554 |
| 84 | 84 | 0.541 |
| 85 | 85 | 0.426 |
| 86 | 86 | 0.942 |
| 87 | 87 | 0.764 |
| 88 | 88 | 0.793 |
| 89 | 89 | 0.965 |
| 9 | 9 | 0.0834 |
| 90 | 90 | 0.0251 |
| 91 | 91 | 0.921 |
| 92 | 92 | 0.695 |
| 93 | 93 | 0.446 |
| 94 | 94 | 0.462 |
| 95 | 95 | 0.268 |
| 96 | 96 | 0.387 |
| 97 | 97 | 0.206 |
| 98 | 98 | 0.128 |
| 99 | 99 | 0.49 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13847
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000210 human sample
FF:0200006 myoblast differentiation to myotubes, control sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000056 (myoblast)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
0000737 (striated muscle cell)
0000228 (multinucleate cell)
0002372 (myotube)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0200006 (myoblast differentiation to myotubes, control sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000515 (skeletal muscle myoblast)
