FFCP PHASE1:Hg19::chr10:79397202..79397249,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:79397202..79397249,-
|short_description=p3@KCNMA1
|description=CAGE_peak_3_at_KCNMA1_5end
|association_with_transcript=0bp_to_ENST00000372408,ENST00000372...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3778 | |EntrezGene=3778 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6284 | |HGNC=6284 | ||
|TSSclassifier=strong | |||
|UniProt=Q5SVK5 | |UniProt=Q5SVK5 | ||
|association_with_transcript=0bp_to_ENST00000372408,ENST00000372437,ENST00000404771_5end | |||
|cluster_id=chr10:79397202..79397249,- | |||
|description=CAGE_peak_3_at_KCNMA1_5end | |||
|id=chr10:79397202..79397249,- | |||
|ontology_enrichment_celltype=CL:0000055!7.02e-21!180;CL:0000057!1.24e-11!75;CL:0002620!1.26e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.80e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.79e-11,76;CL:0002620,5.32e-08,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.40e-14!365;UBERON:0000468!7.67e-14!659;UBERON:0000467!6.12e-12!625;UBERON:0000480!1.09e-11!626;UBERON:0000033!2.06e-11!123;UBERON:0004121!1.05e-10!169;UBERON:0002050!3.13e-10!605;UBERON:0005423!3.13e-10!605;UBERON:0000153!3.31e-10!129;UBERON:0007811!3.31e-10!129;UBERON:0000922!3.47e-10!612;UBERON:0000923!4.38e-10!604;UBERON:0005291!4.38e-10!604;UBERON:0006598!4.38e-10!604;UBERON:0002532!4.38e-10!604;UBERON:0000062!5.14e-10!511;UBERON:0007023!8.47e-10!115;UBERON:0000924!1.23e-09!173;UBERON:0006601!1.23e-09!173;UBERON:0000955!1.28e-09!69;UBERON:0006238!1.28e-09!69;UBERON:0001017!5.48e-09!82;UBERON:0002780!8.70e-09!41;UBERON:0001890!8.70e-09!41;UBERON:0006240!8.70e-09!41;UBERON:0000914!8.76e-09!83;UBERON:0002329!8.76e-09!83;UBERON:0003077!8.76e-09!83;UBERON:0003059!8.76e-09!83;UBERON:0007282!8.76e-09!83;UBERON:0009618!8.76e-09!83;UBERON:0007285!8.76e-09!83;UBERON:0001893!9.17e-09!34;UBERON:0005743!1.10e-08!86;UBERON:0000481!1.21e-08!347;UBERON:0003080!1.30e-08!42;UBERON:0001049!1.30e-08!57;UBERON:0005068!1.30e-08!57;UBERON:0006241!1.30e-08!57;UBERON:0007135!1.30e-08!57;UBERON:0001869!1.50e-08!32;UBERON:0000073!2.15e-08!94;UBERON:0001016!2.15e-08!94;UBERON:0002791!2.38e-08!33;UBERON:0002020!4.38e-08!34;UBERON:0003528!4.38e-08!34;UBERON:0002616!2.43e-07!59;UBERON:0000479!6.07e-07!787;UBERON:0003075!7.22e-07!86;UBERON:0007284!7.22e-07!86;UBERON:0003102!7.60e-07!95;UBERON:0000956!7.96e-07!25;UBERON:0000203!7.96e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.49e-08;34!UBERON:0001869;2.10e-08;32!UBERON:0001434;3.22e-08;36!UBERON:0002791;4.41e-08;32!UBERON:0003528;1.26e-07;34!UBERON:0002020;1.26e-07;34!UBERON:0000956;2.93e-07;25!UBERON:0000203;2.93e-07;25!UBERON:0002780;4.73e-07;41!UBERON:0001890;4.73e-07;41!UBERON:0002619;7.22e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000955,5.53e-10,68;UBERON:0006238,5.53e-10,68;UBERON:0004121,7.03e-10,171;UBERON:0000924,7.03e-10,171;UBERON:0006601,7.03e-10,171;UBERON:0002780,2.45e-09,41;UBERON:0001890,2.45e-09,41;UBERON:0003080,2.45e-09,41;UBERON:0006240,2.45e-09,41;UBERON:0001893,2.53e-09,34;UBERON:0001869,4.25e-09,32;UBERON:0001049,5.13e-09,56;UBERON:0005068,5.13e-09,56;UBERON:0006241,5.13e-09,56;UBERON:0007135,5.13e-09,56;UBERON:0000073,6.41e-09,53;UBERON:0002616,6.41e-09,53;UBERON:0001017,7.46e-09,81;UBERON:0002791,9.81e-09,32;UBERON:0003528,1.34e-08,34;UBERON:0002020,1.34e-08,34;UBERON:0007023,1.69e-08,114;UBERON:0001016,2.41e-08,89;UBERON:0010314,3.37e-08,132;UBERON:0000956,2.88e-07,25;UBERON:0000203,2.88e-07,25;UBERON:0002619,6.65e-07,22 | |||
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|phase1_expression=0.726713517082227,0.428201047781966,0.704772020479856,0,1.78784437770915,0,0,0.631719873426831,0,0.491467873003018,0.697801167972428,8.95609625733706,3.4289707169699,12.3766352960047,9.27912652038164,1.34465029290355,1.20538905604795,0.730310090387373,1.46379839637152,6.40229501999297,8.36402834101437,1.88072832886853,2.28988789704845,5.74872585306114,4.2684497462233,0.993374274723366,1.64201178899891,1.41679406364623,3.93364276848904,0.383829398097213,0.464448369948228,1.83884244895785,2.409647350226,4.80680213216824,0,3.2698923472107,0,0,0,0.217010870715852,41.424362734386,39.8389209203345,36.8333061716887,0,1.88937971844405,1.4555043671269,0.232429036905685,1.23350366406548,1.23882548358041,0.28769239232215,1.0246428261164,0.945928919554341,0.689491361473237,0,2.70852973188684,0.376484679085209,1.63743690034707,1.79778787556068,0,0.320929027076094,2.55734850319616,0,0.398927315243264,0,0.290209238628584,0,1.24564449799115,0.251248665256743,0.521482918420201,1.95469960234605,0.605399502633369,0.368277635987565,0.949387162322653,0,3.82687739937078,4.19317291016752,0,0.150176892841506,0.32145117339416,0.285012743741249,4.57508357557907,18.6317436839927,0,1.09227722252426,0.889509253863555,1.28019066769952,0.400395987036012,1.14950487990897,0,0,1.70763890732835,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,12.6503703334598,11.0294340339896,14.4846518960824,15.905718941022,17.5188553308949,2.9305793320861,0.665188192387692,1.31752178539689,3.73290365168481,1.45718115317017,2.22470665670658,0,0,1.72845348674525,0,0,0,0.596287222100115,1.72046919021225,0.347140501607594,1.69592382577203,0,0,0.835979866147242,0,0.35576626268671,0,0,4.56163263431108,0,0.367663080345869,0.81014194788176,0,0,0,0,0,0.732806975721629,2.63560834872127,0,5.66922267785295,3.47880366186723,3.16576279161449,4.36950296683622,7.74458876021797,1.77334191099179,3.36406560085384,1.06748995729705,3.94668077467456,3.7345324247972,0.942974704487816,0.163461903113459,0.454072282934794,0,3.51482147750695,3.43376084513353,10.8389646093445,5.82849854152024,3.99277295388801,8.09364721840658,6.88208952841018,13.474175302823,8.84407084644729,11.46916171051,9.50402285825643,9.39614331258516,3.64064544775211,2.15585442544872,9.25848626747364,9.75924455001321,17.4550392755035,14.4862614890677,16.8568287689461,5.10809400282429,0.226864366320042,13.6336123123535,4.69826255400848,3.60284231971255,20.7062856298238,4.225153698776,11.3361837620077,5.95573940261087,20.0843835367107,4.87185025805993,10.6022185182528,4.78659472939957,2.26304479546337,17.3954700333141,5.13835700960965,3.73033303083073,0.57978255948989,0.545492241181669,1.72082757233402,1.58565817968474,2.12047629314376,1.51052125730374,0.621966330092223,0.504641701751257,0,3.12899064659632,10.935095949279,8.28809528114883,1.39310378409594,5.77503585335668,0,0,0,0,0,0,0,0,0,0,0,4.9388881359768,1.47008711385542,0,0.982827216677626,1.18157981336281,0,0,3.25978839567199,0.109750285408626,0,0.201057944823262,2.77765335475589,0.325808305310325,4.15973914111831,2.88662684050547,2.66639931442677,0.117408694235822,0,0,0,0.790204397959275,0.858486162094873,20.9284455174288,11.4662089918226,18.2816329615136,1.87467667973554,0.16798212819886,0.141775097242386,8.50805965677059,5.52204483176528,9.96794965829549,0,0,0,0,0,0,0,0,0,0.411309970813294,0,0,1.68196626518041,0.43596006883328,1.466765716419,4.91232519879556,14.3062578340753,1.690605505112,2.12750493267896,4.16029747645464,6.94459910507784,9.92943924162948,9.59119844457958,0.285955987316295,14.650783345569,4.93944202068461,0.325736184293735,0.355391948742546,3.16780749173372,4.52159065589379,3.48613383440118,2.49932477955143,20.6760427090024,17.0767411086923,10.5416969741516,7.66799537573064,12.6348129417525,4.27910715122155,11.5825045334063,9.24643451476725,3.9393411912777,0,0,0,0,2.28685161800217,1.30139853857622,0.773288812777695,0.335032530668698,0,1.49801404789436,0,1.65766205374414,6.37995756939527,4.50153468953709,5.96783052139418,9.56665963041713,9.8135943838439,10.5660618072736,6.32563640960651,5.71797589482666,2.27407504055985,5.17365356462525,2.65690239414175,8.48098175291834,5.5605513259573,1.17480694477644,1.37257369524342,0,1.72571360654893,0.320182673410333,6.97193414326397,3.32870879020994,6.04780586659361,2.72918588600655,1.38115775959256,1.12264037773229,2.30650468660262,2.55853624533352,1.28683136914886,1.48418066444991,4.31787142647436,3.9063579568888,9.033987161519,4.67328986265259,6.2753604368378,0,1.80455823272956,1.84161977871793,4.01850568576124,4.00600569614778,0.655622074797121,2.70719767744447,1.07821471946181,7.84349769176855,1.46139224653261,1.47772280450026,1.13733384070897,0,2.37507507712353,3.08454505380579,9.7540717515787,4.51520796469368,2.54876273045038,3.3243040357149,7.16399215110971,0,0,2.82095137628028,0.328014645699706,1.30151357865721,0.9273691048295,9.7063632707444,11.7988584886441,1.72279661398852,0,0,2.80345083047154,5.237652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| ||
|short_description=p3@KCNMA1 | |||
}} | }} |
Latest revision as of 10:16, 19 September 2015
Short description: | p3@KCNMA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_KCNMA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000372408, ENST00000372437, ENST00000404771_5end |
EntrezGene: | KCNMA1 |
HGNC: | 6284 |
UniProt: | Q5SVK5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.79e-11 | 76 |
skin fibroblast | 5.32e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
brain | 5.53e-10 | 68 |
future brain | 5.53e-10 | 68 |
ectoderm-derived structure | 7.03e-10 | 171 |
ectoderm | 7.03e-10 | 171 |
presumptive ectoderm | 7.03e-10 | 171 |
regional part of forebrain | 2.45e-09 | 41 |
forebrain | 2.45e-09 | 41 |
anterior neural tube | 2.45e-09 | 41 |
future forebrain | 2.45e-09 | 41 |
telencephalon | 2.53e-09 | 34 |
cerebral hemisphere | 4.25e-09 | 32 |
neural tube | 5.13e-09 | 56 |
neural rod | 5.13e-09 | 56 |
future spinal cord | 5.13e-09 | 56 |
neural keel | 5.13e-09 | 56 |
regional part of nervous system | 6.41e-09 | 53 |
regional part of brain | 6.41e-09 | 53 |
central nervous system | 7.46e-09 | 81 |
regional part of telencephalon | 9.81e-09 | 32 |
brain grey matter | 1.34e-08 | 34 |
gray matter | 1.34e-08 | 34 |
adult organism | 1.69e-08 | 114 |
nervous system | 2.41e-08 | 89 |
structure with developmental contribution from neural crest | 3.37e-08 | 132 |
cerebral cortex | 2.88e-07 | 25 |
pallium | 2.88e-07 | 25 |
regional part of cerebral cortex | 6.65e-07 | 22 |