FFCP PHASE1:Hg19::chr12:56473939..56473994,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:56473939..56473994,+
|short_description=p1@ERBB3
|description=CAGE_peak_1_at_ERBB3_5end
|association_with_transcript=0bp_to_ENST00000450146,ENST0000054688...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2065 | |EntrezGene=2065 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3431 | |HGNC=3431 | ||
|TSSclassifier=strong | |||
|UniProt=F8VRI5,B4DGQ7 | |UniProt=F8VRI5,B4DGQ7 | ||
|association_with_transcript=0bp_to_ENST00000450146,ENST00000546884,ENST00000550869,ENST00000551085,ENST00000551242,uc010sqb.1_5end | |||
|cluster_id=chr12:56473939..56473994,+ | |||
|coexpression_cluster_id=C3299 | |||
|description=CAGE_peak_1_at_ERBB3_5end | |||
|id=chr12:56473939..56473994,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.38e-15!254;CL:0000223!3.07e-10!59;CL:0002076!8.21e-07!43 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.01e-14,253;CL:0000223,3.34e-11,58;CL:0002076,2.38e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.77e-07;82!UBERON:0002532;4.54e-07;206!UBERON:0010316;4.54e-07;206 | |||
|ontology_enrichment_disease=DOID:305!4.64e-17!106;DOID:0050687!2.61e-13!143;DOID:299!2.09e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.73e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.00e-14,106;DOID:0050687,8.95e-11,143;DOID:299,1.79e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.97e-28!115;UBERON:0004119!3.05e-18!169;UBERON:0000925!3.05e-18!169;UBERON:0006595!3.05e-18!169;UBERON:0001049!4.24e-16!57;UBERON:0005068!4.24e-16!57;UBERON:0006241!4.24e-16!57;UBERON:0007135!4.24e-16!57;UBERON:0001007!7.82e-16!155;UBERON:0001555!7.82e-16!155;UBERON:0007026!7.82e-16!155;UBERON:0004921!3.08e-15!129;UBERON:0004185!3.08e-15!129;UBERON:0000481!5.10e-15!347;UBERON:0000062!1.24e-13!511;UBERON:0002616!2.97e-13!59;UBERON:0000077!3.43e-13!130;UBERON:0001017!7.35e-13!82;UBERON:0003080!8.61e-13!42;UBERON:0000064!1.19e-12!219;UBERON:0005743!1.54e-12!86;UBERON:0002780!1.71e-12!41;UBERON:0001890!1.71e-12!41;UBERON:0006240!1.71e-12!41;UBERON:0000475!3.07e-12!365;UBERON:0000955!1.27e-11!69;UBERON:0006238!1.27e-11!69;UBERON:0004121!1.35e-11!169;UBERON:0000466!3.43e-11!126;UBERON:0000073!8.87e-11!94;UBERON:0001016!8.87e-11!94;UBERON:0000924!1.10e-10!173;UBERON:0006601!1.10e-10!173;UBERON:0001893!1.79e-10!34;UBERON:0002020!2.55e-10!34;UBERON:0003528!2.55e-10!34;UBERON:0000153!3.84e-10!129;UBERON:0007811!3.84e-10!129;UBERON:0002791!4.73e-10!33;UBERON:0001041!6.73e-10!98;UBERON:0003075!6.99e-10!86;UBERON:0007284!6.99e-10!86;UBERON:0000033!8.72e-10!123;UBERON:0005911!1.12e-09!82;UBERON:0001869!2.62e-09!32;UBERON:0004111!3.80e-09!241;UBERON:0000483!5.32e-09!309;UBERON:0005177!7.05e-09!107;UBERON:0000119!9.27e-09!312;UBERON:0002346!1.09e-08!90;UBERON:0002619!1.30e-08!22;UBERON:0000922!2.97e-08!612;UBERON:0000468!3.02e-08!659;UBERON:0000477!4.65e-08!286;UBERON:0001950!6.59e-08!20;UBERON:0000464!1.11e-07!104;UBERON:0003056!2.27e-07!61;UBERON:0001004!4.48e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.76e-10;34!UBERON:0002780;2.95e-10;41!UBERON:0001890;2.95e-10;41!UBERON:0003528;7.25e-10;34!UBERON:0002020;7.25e-10;34!UBERON:0002791;1.32e-09;32!UBERON:0001869;1.79e-09;32!UBERON:0000073;3.25e-09;53!UBERON:0002616;3.25e-09;53!UBERON:0002619;4.86e-09;22!UBERON:0007023;9.46e-09;114!UBERON:0001950;3.32e-08;20!UBERON:0004921;7.12e-08;33!UBERON:0000956;3.37e-07;25!UBERON:0000203;3.37e-07;25!UBERON:0005409;9.65e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.13e-31,114;UBERON:0011216,8.09e-22,223;UBERON:0001049,2.69e-17,56;UBERON:0005068,2.69e-17,56;UBERON:0006241,2.69e-17,56;UBERON:0007135,2.69e-17,56;UBERON:0000073,1.24e-15,53;UBERON:0002616,1.24e-15,53;UBERON:0004119,6.40e-15,160;UBERON:0000925,6.40e-15,160;UBERON:0006595,6.40e-15,160;UBERON:0002780,7.64e-14,41;UBERON:0001890,7.64e-14,41;UBERON:0003080,7.64e-14,41;UBERON:0006240,7.64e-14,41;UBERON:0004921,1.20e-12,118;UBERON:0001007,1.64e-12,145;UBERON:0001555,1.64e-12,145;UBERON:0007026,1.64e-12,145;UBERON:0010371,3.61e-12,104;UBERON:0001017,3.61e-12,81;UBERON:0001893,5.50e-12,34;UBERON:0003528,8.37e-12,34;UBERON:0002020,8.37e-12,34;UBERON:0004111,1.30e-11,240;UBERON:0003075,2.94e-11,82;UBERON:0007284,2.94e-11,82;UBERON:0000955,4.09e-11,68;UBERON:0006238,4.09e-11,68;UBERON:0002791,9.30e-11,32;UBERON:0001869,1.38e-10,32;UBERON:0001016,1.66e-10,89;UBERON:0002346,5.95e-10,86;UBERON:0004121,6.78e-10,171;UBERON:0000924,6.78e-10,171;UBERON:0006601,6.78e-10,171;UBERON:0005911,2.36e-09,82;UBERON:0002619,4.48e-09,22;UBERON:0000025,5.06e-09,192;UBERON:0000483,1.04e-08,306;UBERON:0003056,1.76e-08,61;UBERON:0005177,2.48e-08,101;UBERON:0000922,2.67e-08,592;UBERON:0000119,2.68e-08,309;UBERON:0001950,3.15e-08,20;UBERON:0001041,1.32e-07,87;UBERON:0000956,3.15e-07,25;UBERON:0000203,3.15e-07,25;UBERON:0005423,6.74e-07,581 | |||
|phase1_expression=0,0,0.281908808191942,0,0,2.61701557230111,0,0,0,4.66894479352867,22.3296373751177,8.73765488520689,7.64924236862515,0.123766352960047,0.662794751455832,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0,0.164201178899891,0,0,0,1.08371286321253,7.35536979583142,5.72291245678675,4.80680213216824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00311897234407,0,0,0,0.334231370655521,0.294605907474837,0,0,0.512365278902701,0,0.986627427622057,0.829050053357545,0.869409257205157,0.14828656316206,0.802622484269139,0,0.453237370790265,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0.12786256184353,0,0,0,0,0,0,0.443458794925128,0,19.122945022666,8.74308691902101,6.3033355273353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0.112611480483322,0,0,0,0,0,4.36094052142534,5.4666914686485,0,0,0,0.709336764396714,2.24271040056923,0,0.24666754841716,0,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0.368502951935304,0,0,0.247266929278557,0,0,0.168336113954066,0.125118519871964,0,0,0,0.150238058906597,0,0,0,0,0,0,1.28820270022815,0.18611685633159,0.168776332241266,0,0.504867548488229,0,1.13152239773168,0.355009592516614,0,0,7.53717327336858,3.81844568827169,3.15485054927904,24.6386886381783,18.6866973333294,21.8444612594695,14.9271919222133,20.6903097718015,13.8691396448815,0,0.643240938192885,0,0,0,1.0647612003586,1.18009283054671,0.723033089650446,0.55146986366197,0.653638332277218,0.949082476444386,0.808987848960987,0.98110732562673,0.38474715694639,0,0,0.4115740113314,5.88034845542168,86.193423678845,41.2787431004603,33.67502468084,0.441463099414651,55.5907742214873,0,3.29250856225877,4.49607013030478,1.50793458617446,2.68506490959736,0,0,0,0,0.117408694235822,0,0,0,65.5869650306198,65.2449483192103,0,0,0,9.3733833986777,3.52762469217605,3.1190521393325,0,0.290633938513962,0.766765358330422,0,0,0,0.144119953416961,1.13618190083742,4.19086102328316,18.3354444267973,29.3043618025117,5.13217338068116,16.4523988325318,35.7408238834262,28.5826432630578,0.112131084345361,0,0.1466765716419,0.129271715757778,0,0,0,1.04007436911366,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.99972991182057,2.43247561282381,0,0,0.718874566474748,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,1.00509759200609,0,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,2.9115920614313,6.60187258549499,18.2934801439364,2.57711112983969,0,0,1.03473071292505,0,0.737476674166813,0.0868836144680828,0.195801157462741,9.95115929051482,0,0,0,4.54691357169389,11.6504807657348,8.76931850656073,0.496215615637554,0.153461973288062,0.280660094433074,1.15325234330131,0,1.12597744800525,5.93672265779964,0,0,0.164254312027618,0,0,37.7081482725861,2.20557117333613,5.15653538041019,0.114814448164607,0,0.131124414959424,10.3775910968705,8.77974842990328,7.84349769176855,11.6911379722609,4.53872004239366,0,0,0,0,1.08378575017541,2.00675909541941,5.86215428003588,10.8039881160734,4.92524460388792,0.219259876645935,0,0.256450125116389,0.328014645699706,0,27.9241141565327,0,0,0,4.55042172225565,11.2478750890912,6.28359668898793,0.308097234229289,0.767518373630648,3.03240459465967,0.322260734604821,0.725083469571143,2.81247870473133,25.6412262662604,2.97512847649761,3.0750410778417,3.06270509987002,4.95673126192195,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0.632758849437452,0.762520775695299,0,0,0.318203247925937,0,0.359744915166629,0,0.117812402345686,0.202182481573316,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0,0,2.62357900818653,0,0.30982349809975,0.281695602532241,0.143411352204052,0.0982490410131212,0,0,0.211107635297664,0.658589785919804,0,0,2.4055528181378,4.02181365321472,9.80018863751903,27.301702225266,2.58303223602738,1.68471475667626,9.75546337780687,5.28363820476007,0,0,0,0.238231775457789,0,0,0,0,0.854592569019785,0,11.2718499351275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,33.4981567330713,0.439524537815682,0.242721043499027,0,0.284136146806413,29.3655716227359,27.0237859557701,21.8084098490455,1.9882952955326,16.0363134707985,0.445234820091624,0,0,7.57142355354065,23.4841328201476,59.9599939893177,0.102268682502155,0,0,10.2449920307953,49.5888653851437,0,6.21453455512682,0,0,24.2333186523805,15.3067361967055,3.99227596002388,101.04597130107,65.1576999971658,10.1499940560871,9.44485620769647,19.8317847228358,20.0929529502746,0.344743373241465,0,0,16.8290863304629,13.1450118101695,1.52581736317083,2.10100593869327,6.79759523593159,8.11725969469698,0.435753854075961,18.4039342447756,8.54147869392147,0,8.0697366535821,36.1723306971382,18.0354637390533,22.6490823409663,14.4724197574942,25.5856692488945,0,0,0,0.676786981851542,0.588187602953219,0.671286347903371,1.13852239634511,0,6.32994193584081,37.3803130684448,17.6691339292426,0.216388639742091,49.7630965539252,61.9202951523374,105.097184928584,0,0,0,62.3460480071263,8.02577647298789,36.5452535331529,0,20.1534557500052,0.48556075906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| ||
|short_description=p1@ERBB3 | |||
}} | }} |
Latest revision as of 09:37, 19 September 2015
Short description: | p1@ERBB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ERBB3_5end |
Coexpression cluster: | C3299_serous_signet_skeletal_optic_colon_breast_Hepatocyte |
Association with transcript: | 0bp_to_ENST00000450146, ENST00000546884, ENST00000550869, ENST00000551085, ENST00000551242, uc010sqb.1_5end |
EntrezGene: | ERBB3 |
HGNC: | 3431 |
UniProt: | F8VRI5B4DGQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.01e-14 | 253 |
endodermal cell | 3.34e-11 | 58 |
endo-epithelial cell | 2.38e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.00e-14 | 106 |
cell type cancer | 8.95e-11 | 143 |
adenocarcinoma | 1.79e-08 | 25 |