FFCP PHASE1:Hg19::chr1:22109611..22109624,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84196 | |EntrezGene=84196 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18533 | |HGNC=18533 | ||
|TSSclassifier=strong | |||
|UniProt=Q86UV5 | |UniProt=Q86UV5 | ||
|association_with_transcript=63bp_to_ENST00000400301,NM_001032730,NM_032236,uc001bfb.2,uc001bfc.2,uc001bfe.1,uc001bff.2,uc009vqc.2,uc010odq.1_5end | |association_with_transcript=63bp_to_ENST00000400301,NM_001032730,NM_032236,uc001bfb.2,uc001bfc.2,uc001bfe.1,uc001bff.2,uc009vqc.2,uc010odq.1_5end | ||
|cluster_id=chr1:22109611..22109624,- | |||
|description=CAGE_peak_4_at_USP48_5end | |description=CAGE_peak_4_at_USP48_5end | ||
|id=chr1:22109611..22109624,- | |id=chr1:22109611..22109624,- | ||
|ontology_enrichment_celltype=CL:0000542!7.66e-12!53;CL:0000051!7.66e-12!53;CL:0000838!1.05e-11!52;CL:0000037!3.14e-08!172;CL:0000566!3.14e-08!172;CL:0002032!1.11e-07!165;CL:0000837!1.11e-07!165;CL:0000988!3.70e-07!182;CL:0000791!5.11e-07!18;CL:0000789!5.11e-07!18;CL:0002420!5.11e-07!18;CL:0002419!5.11e-07!18;CL:0000790!5.11e-07!18;CL:0000945!5.46e-07!24;CL:0000826!5.46e-07!24 | |ontology_enrichment_celltype=CL:0000542!7.66e-12!53;CL:0000051!7.66e-12!53;CL:0000838!1.05e-11!52;CL:0000037!3.14e-08!172;CL:0000566!3.14e-08!172;CL:0002032!1.11e-07!165;CL:0000837!1.11e-07!165;CL:0000988!3.70e-07!182;CL:0000791!5.11e-07!18;CL:0000789!5.11e-07!18;CL:0002420!5.11e-07!18;CL:0002419!5.11e-07!18;CL:0000790!5.11e-07!18;CL:0000945!5.46e-07!24;CL:0000826!5.46e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000542;8.73e-08;53!CL:0000791;2.24e-07;18!CL:0000789;2.24e-07;18!CL:0002419;2.24e-07;18!CL:0000945;3.61e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,5.73e-12,53;CL:0000051,5.73e-12,53;CL:0000838,7.91e-12,52;CL:0000037,4.16e-09,168;CL:0002032,1.85e-08,161;CL:0000837,1.85e-08,161;CL:0000988,2.35e-08,177;CL:0000791,3.94e-07,18;CL:0000789,3.94e-07,18;CL:0002420,3.94e-07,18;CL:0002419,3.94e-07,18;CL:0000790,3.94e-07,18;CL:0000945,4.21e-07,24;CL:0000826,4.21e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;8.73e-08;53!CL:0000790;2.24e-07;18 | |||
|ontology_enrichment_disease=DOID:2531!3.02e-08!51;DOID:0060083!3.02e-08!51;DOID:8692!4.43e-08!31;DOID:1240!7.96e-08!39 | |ontology_enrichment_disease=DOID:2531!3.02e-08!51;DOID:0060083!3.02e-08!51;DOID:8692!4.43e-08!31;DOID:1240!7.96e-08!39 | ||
|ontology_enrichment_disease_v019=DOID:8692;1.44e-08;31!DOID:1240;3.39e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,3.15e-08,51;DOID:0060083,3.15e-08,51;DOID:8692,4.15e-08,31;DOID:1240,8.77e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.35e-10!115;UBERON:0002616!3.89e-09!59;UBERON:0001049!4.04e-09!57;UBERON:0005068!4.04e-09!57;UBERON:0006241!4.04e-09!57;UBERON:0007135!4.04e-09!57;UBERON:0000955!7.86e-09!69;UBERON:0006238!7.86e-09!69;UBERON:0002780!8.78e-09!41;UBERON:0001890!8.78e-09!41;UBERON:0006240!8.78e-09!41;UBERON:0005743!1.19e-08!86;UBERON:0001017!1.47e-08!82;UBERON:0002346!1.49e-08!90;UBERON:0003080!1.53e-08!42;UBERON:0003075!2.48e-08!86;UBERON:0007284!2.48e-08!86;UBERON:0000073!4.39e-08!94;UBERON:0001016!4.39e-08!94;UBERON:0001893!4.58e-08!34;UBERON:0002020!6.87e-08!34;UBERON:0003528!6.87e-08!34;UBERON:0002791!1.25e-07!33;UBERON:0001869!2.49e-07!32 | |ontology_enrichment_uberon=UBERON:0007023!6.35e-10!115;UBERON:0002616!3.89e-09!59;UBERON:0001049!4.04e-09!57;UBERON:0005068!4.04e-09!57;UBERON:0006241!4.04e-09!57;UBERON:0007135!4.04e-09!57;UBERON:0000955!7.86e-09!69;UBERON:0006238!7.86e-09!69;UBERON:0002780!8.78e-09!41;UBERON:0001890!8.78e-09!41;UBERON:0006240!8.78e-09!41;UBERON:0005743!1.19e-08!86;UBERON:0001017!1.47e-08!82;UBERON:0002346!1.49e-08!90;UBERON:0003080!1.53e-08!42;UBERON:0003075!2.48e-08!86;UBERON:0007284!2.48e-08!86;UBERON:0000073!4.39e-08!94;UBERON:0001016!4.39e-08!94;UBERON:0001893!4.58e-08!34;UBERON:0002020!6.87e-08!34;UBERON:0003528!6.87e-08!34;UBERON:0002791!1.25e-07!33;UBERON:0001869!2.49e-07!32 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.04e-09,114;UBERON:0001049,3.44e-09,56;UBERON:0005068,3.44e-09,56;UBERON:0006241,3.44e-09,56;UBERON:0007135,3.44e-09,56;UBERON:0000073,4.77e-09,53;UBERON:0002616,4.77e-09,53;UBERON:0002780,1.11e-08,41;UBERON:0001890,1.11e-08,41;UBERON:0003080,1.11e-08,41;UBERON:0006240,1.11e-08,41;UBERON:0000955,2.43e-08,68;UBERON:0006238,2.43e-08,68;UBERON:0001893,4.74e-08,34;UBERON:0001017,5.91e-08,81;UBERON:0003528,7.13e-08,34;UBERON:0002020,7.13e-08,34;UBERON:0002346,1.58e-07,86;UBERON:0001016,1.70e-07,89;UBERON:0001869,2.64e-07,32;UBERON:0003075,2.66e-07,82;UBERON:0007284,2.66e-07,82;UBERON:0002791,2.92e-07,32 | |||
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| ||
|short_description=p4@USP48 | |short_description=p4@USP48 | ||
}} | }} |
Latest revision as of 07:13, 25 September 2015
Short description: | p4@USP48 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_USP48_5end |
Coexpression cluster: | NA |
Association with transcript: | 63bp_to_ENST00000400301, NM_001032730, NM_032236, uc001bfb.2, uc001bfc.2, uc001bfe.1, uc001bff.2, uc009vqc.2, uc010odq.1_5end |
EntrezGene: | USP48 |
HGNC: | 18533 |
UniProt: | Q86UV5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 5.73e-12 | 53 |
common lymphoid progenitor | 5.73e-12 | 53 |
lymphoid lineage restricted progenitor cell | 7.91e-12 | 52 |
hematopoietic stem cell | 4.16e-09 | 168 |
hematopoietic oligopotent progenitor cell | 1.85e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.85e-08 | 161 |
hematopoietic cell | 2.35e-08 | 177 |
mature alpha-beta T cell | 3.94e-07 | 18 |
alpha-beta T cell | 3.94e-07 | 18 |
immature T cell | 3.94e-07 | 18 |
mature T cell | 3.94e-07 | 18 |
immature alpha-beta T cell | 3.94e-07 | 18 |
lymphocyte of B lineage | 4.21e-07 | 24 |
pro-B cell | 4.21e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.04e-09 | 114 |
neural tube | 3.44e-09 | 56 |
neural rod | 3.44e-09 | 56 |
future spinal cord | 3.44e-09 | 56 |
neural keel | 3.44e-09 | 56 |
regional part of nervous system | 4.77e-09 | 53 |
regional part of brain | 4.77e-09 | 53 |
regional part of forebrain | 1.11e-08 | 41 |
forebrain | 1.11e-08 | 41 |
anterior neural tube | 1.11e-08 | 41 |
future forebrain | 1.11e-08 | 41 |
brain | 2.43e-08 | 68 |
future brain | 2.43e-08 | 68 |
telencephalon | 4.74e-08 | 34 |
central nervous system | 5.91e-08 | 81 |
brain grey matter | 7.13e-08 | 34 |
gray matter | 7.13e-08 | 34 |
neurectoderm | 1.58e-07 | 86 |
nervous system | 1.70e-07 | 89 |
cerebral hemisphere | 2.64e-07 | 32 |
neural plate | 2.66e-07 | 82 |
presumptive neural plate | 2.66e-07 | 82 |
regional part of telencephalon | 2.92e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.15e-08 | 51 |
immune system cancer | 3.15e-08 | 51 |
myeloid leukemia | 4.15e-08 | 31 |
leukemia | 8.77e-08 | 39 |