FFCP PHASE1:Hg19::chr6:106535874..106535878,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=639 | |EntrezGene=639 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9346 | |HGNC=9346 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-350bp_to_ENST00000489365_5end | |association_with_transcript=-350bp_to_ENST00000489365_5end | ||
|cluster_id=chr6:106535874..106535878,+ | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_12_at_PRDM1_5end | |description=CAGE_peak_12_at_PRDM1_5end | ||
|id=chr6:106535874..106535878,+ | |id=chr6:106535874..106535878,+ | ||
|ontology_enrichment_celltype=CL:0002057!7.01e-44!42;CL:0002009!4.37e-42!65;CL:0002194!7.09e-42!63;CL:0000576!7.09e-42!63;CL:0000040!7.09e-42!63;CL:0000559!7.09e-42!63;CL:0000860!1.06e-41!45;CL:0000766!2.37e-38!76;CL:0000557!6.02e-37!71;CL:0000839!7.45e-36!70;CL:0000738!2.87e-27!140;CL:0002087!2.96e-27!119;CL:0000763!3.92e-24!112;CL:0000049!3.92e-24!112;CL:0002031!3.28e-22!124;CL:0000988!5.97e-19!182;CL:0000037!9.82e-19!172;CL:0000566!9.82e-19!172;CL:0002032!7.05e-18!165;CL:0000837!7.05e-18!165;CL:0000080!1.18e-07!6;CL:0000134!3.43e-07!358 | |ontology_enrichment_celltype=CL:0002057!7.01e-44!42;CL:0002009!4.37e-42!65;CL:0002194!7.09e-42!63;CL:0000576!7.09e-42!63;CL:0000040!7.09e-42!63;CL:0000559!7.09e-42!63;CL:0000860!1.06e-41!45;CL:0000766!2.37e-38!76;CL:0000557!6.02e-37!71;CL:0000839!7.45e-36!70;CL:0000738!2.87e-27!140;CL:0002087!2.96e-27!119;CL:0000763!3.92e-24!112;CL:0000049!3.92e-24!112;CL:0002031!3.28e-22!124;CL:0000988!5.97e-19!182;CL:0000037!9.82e-19!172;CL:0000566!9.82e-19!172;CL:0002032!7.05e-18!165;CL:0000837!7.05e-18!165;CL:0000080!1.18e-07!6;CL:0000134!3.43e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.27e-118;33!CL:0002057;1.27e-118;33!CL:0000473;4.33e-88;39!CL:0000234;4.33e-88;39!CL:0000576;2.36e-58;48!CL:0000766;1.00e-36;69!CL:0000763;8.03e-20;100!CL:0002087;1.95e-14;104!CL:0000738;1.38e-11;136!CL:0000775;5.51e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.85e-109,42;CL:0002057,3.85e-109,42;CL:0000473,6.22e-102,48;CL:0000234,6.22e-102,48;CL:0002194,1.60e-80,59;CL:0000576,1.60e-80,59;CL:0000040,1.60e-80,59;CL:0000559,1.60e-80,59;CL:0002009,9.26e-78,61;CL:0000766,3.62e-75,72;CL:0000839,1.43e-71,66;CL:0000557,1.92e-70,67;CL:0000763,1.37e-48,108;CL:0000049,1.37e-48,108;CL:0002087,4.00e-39,115;CL:0000738,1.47e-37,136;CL:0002031,2.74e-37,120;CL:0002032,6.38e-31,161;CL:0000837,6.38e-31,161;CL:0000037,2.05e-29,168;CL:0000988,1.20e-27,177;CL:0000134,4.47e-12,354;CL:0002320,9.92e-12,361;CL:0000219,1.64e-10,386;CL:0000775,4.50e-09,3;CL:0000048,5.14e-09,427;CL:0000723,8.27e-09,433;CL:0000034,1.53e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;3.60e-82;42!CL:0000049;2.58e-15;108!UBERON:0005425;3.84e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.17e-34!102;UBERON:0003061!8.17e-34!102;UBERON:0002371!2.40e-32!80;UBERON:0001474!4.51e-31!86;UBERON:0002193!4.20e-30!112;UBERON:0004765!4.44e-27!101;UBERON:0001434!4.44e-27!101;UBERON:0002405!1.99e-21!115;UBERON:0002204!1.48e-17!167;UBERON:0003081!2.82e-12!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.84e-07;1!UBERON:0001785;3.84e-07;1!UBERON:0002464;3.84e-07;1!UBERON:0004904;3.84e-07;1!UBERON:0001021;3.84e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.33e-61,76;UBERON:0001474,8.97e-57,82;UBERON:0004765,2.53e-51,90;UBERON:0002405,1.62e-49,93;UBERON:0002390,9.45e-47,98;UBERON:0003061,9.45e-47,98;UBERON:0001434,1.01e-45,100;UBERON:0002193,5.61e-42,108;UBERON:0002204,2.34e-25,167;UBERON:0003081,6.37e-20,203;UBERON:0002384,2.94e-11,371;UBERON:0000926,6.73e-11,315;UBERON:0004120,6.73e-11,315;UBERON:0006603,6.73e-11,315;UBERON:0000941,4.09e-07,1;UBERON:0001785,4.09e-07,1;UBERON:0002464,4.09e-07,1;UBERON:0004904,4.09e-07,1;UBERON:0001021,4.09e-07,1;UBERON:0003902,4.09e-07,1;UBERON:0005425,4.09e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0.251085279189606,0,0.0821005894499457,0.157421562627358,0,0,0.154816123316076,0,0,0,0,0,0,3.32397245119126,0.601633342410425,0.217010870715852,0.223915474239924,0.32389366601898,0.257575567634187,2.4717700592526,3.40088349319928,0.970336244751265,3.0215774797739,3.70051099219643,3.40677007984614,8.34307937734236,4.35473201099471,3.07426898855161,4.13694816883942,5.16387746867061,5.41705946377367,5.08254316765033,1.63743690034707,0.898893937780338,1.83650335422542,0.962787081228281,2.55734850319616,3.62836430205388,4.9865914405408,3.83602275479425,1.45104619314292,2.26954089876456,1.24564449799115,6.02996796616184,3.65038042894141,2.6062661364614,1.81619850790011,1.47311054395026,1.26584954976354,0.211255286311942,0.850417199860174,0,0.22465726229299,0.150176892841506,0.32145117339416,0,0.19891667719909,0,0,0,0,0,0.400395987036012,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0.348259474598534,0.132957960518865,0.715471872916026,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0.245668634623536,0,1.18800285728205,0.247266929278557,0,0,0,0.125118519871964,0,0,0.612975591598039,0,0,0,0,0,0,0,0,0,0.675105328965065,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0.492434012174795,0,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0.502257091432126,2.10833939483032,0,0,0,0.289562613335158,0,0,0,0.197030760201927,0.215627574859517,0,0,0,0,0,0,2.99602809578873,2.99161459204025,0.414415513436035,0,0,0,0,0,0.157702415033935,0.234282829985426,0,0,0,0,0.184369168541703,0.347534457872331,0,0,0.413536052245775,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0.362578348774867,0,0.276242966807689,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0.145016693914229,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0.869932992075073,0,0,0,0,0,0,0,0.636406495851874,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0.569647187174163,0.238231775457789,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0.494411622680279,0,0,0,0,0.102268682502155,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0.113942055847001,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0.593042257361244,0.617819694732514,0.313265848516366,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0.0821154570532092,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0.101998217636322,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0.899895566206002,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0.181848659202559,0,0,0.796191777397232,0,0,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.138314504928436,0,1.42769420259154,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0.328863867814245,0,0,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5647304101948,0,0.150962843566674,0.308696632431779,0.218559560503957,0,0,0,0,0,0.4226557275834,0,0.187967835959707,0.0644578879735772,0,0,0,0,0,0,0,0.157771562193185,0.0679914901909147,0,0,0.371995018166751,0,0,0,0,0.126698501011437,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0.426467963801962,0,0,0,0.112131862580613,0,0,0.435433495793923,0,0.26940821205835,0.143444410785353,0,0.162806537221949,0,0,0.0898252021065869,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0.251085279189606,0,0.0821005894499457,0.157421562627358,0,0,0.154816123316076,0,0,0,0,0,0,3.32397245119126,0.601633342410425,0.217010870715852,0.223915474239924,0.32389366601898,0.257575567634187,2.4717700592526,3.40088349319928,0.970336244751265,3.0215774797739,3.70051099219643,3.40677007984614,8.34307937734236,4.35473201099471,3.07426898855161,4.13694816883942,5.16387746867061,5.41705946377367,5.08254316765033,1.63743690034707,0.898893937780338,1.83650335422542,0.962787081228281,2.55734850319616,3.62836430205388,4.9865914405408,3.83602275479425,1.45104619314292,2.26954089876456,1.24564449799115,6.02996796616184,3.65038042894141,2.6062661364614,1.81619850790011,1.47311054395026,1.26584954976354,0.211255286311942,0.850417199860174,0,0.22465726229299,0.150176892841506,0.32145117339416,0,0.19891667719909,0,0,0,0,0,0.400395987036012,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0.348259474598534,0.132957960518865,0.715471872916026,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0.245668634623536,0,1.18800285728205,0.247266929278557,0,0,0,0.125118519871964,0,0,0.612975591598039,0,0,0,0,0,0,0,0,0,0.675105328965065,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0.492434012174795,0,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0.502257091432126,2.10833939483032,0,0,0,0.289562613335158,0,0,0,0.197030760201927,0.215627574859517,0,0,0,0,0,0,2.99602809578873,2.99161459204025,0.414415513436035,0,0,0,0,0,0.157702415033935,0.234282829985426,0,0,0,0,0.184369168541703,0.347534457872331,0,0,0.413536052245775,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0.362578348774867,0,0.276242966807689,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0.145016693914229,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0.869932992075073,0,0,0,0,0,0,0,0.636406495851874,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0.569647187174163,0.238231775457789,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0.494411622680279,0,0,0,0,0.102268682502155,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0.113942055847001,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0.593042257361244,0.617819694732514,0.313265848516366,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0.0821154570532092,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0.101998217636322,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0.899895566206002,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0.181848659202559,0,0,0.796191777397232,0,0,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.138314504928436,0,1.42769420259154,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0.328863867814245,0,0,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5647304101948,0,0.150962843566674,0.308696632431779,0.218559560503957,0,0,0,0,0,0.4226557275834,0,0.187967835959707,0.0644578879735772,0,0,0,0,0,0,0,0.157771562193185,0.0679914901909147,0,0,0.371995018166751,0,0,0,0,0.126698501011437,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0.426467963801962,0,0,0,0.112131862580613,0,0,0.435433495793923,0,0.26940821205835,0.143444410785353,0,0.162806537221949,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p12@PRDM1 | |short_description=p12@PRDM1 | ||
}} | }} |
Latest revision as of 15:00, 19 September 2015
Short description: | p12@PRDM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_PRDM1_5end |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | -350bp_to_ENST00000489365_5end |
EntrezGene: | PRDM1 |
HGNC: | 9346 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.85e-109 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.85e-109 | 42 |
defensive cell | 6.22e-102 | 48 |
phagocyte | 6.22e-102 | 48 |
monopoietic cell | 1.60e-80 | 59 |
monocyte | 1.60e-80 | 59 |
monoblast | 1.60e-80 | 59 |
promonocyte | 1.60e-80 | 59 |
macrophage dendritic cell progenitor | 9.26e-78 | 61 |
myeloid leukocyte | 3.62e-75 | 72 |
myeloid lineage restricted progenitor cell | 1.43e-71 | 66 |
granulocyte monocyte progenitor cell | 1.92e-70 | 67 |
myeloid cell | 1.37e-48 | 108 |
common myeloid progenitor | 1.37e-48 | 108 |
nongranular leukocyte | 4.00e-39 | 115 |
leukocyte | 1.47e-37 | 136 |
hematopoietic lineage restricted progenitor cell | 2.74e-37 | 120 |
hematopoietic oligopotent progenitor cell | 6.38e-31 | 161 |
hematopoietic multipotent progenitor cell | 6.38e-31 | 161 |
hematopoietic stem cell | 2.05e-29 | 168 |
hematopoietic cell | 1.20e-27 | 177 |
mesenchymal cell | 4.47e-12 | 354 |
connective tissue cell | 9.92e-12 | 361 |
motile cell | 1.64e-10 | 386 |
neutrophil | 4.50e-09 | 3 |
multi fate stem cell | 5.14e-09 | 427 |
somatic stem cell | 8.27e-09 | 433 |
stem cell | 1.53e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.33e-61 | 76 |
bone element | 8.97e-57 | 82 |
skeletal element | 2.53e-51 | 90 |
immune system | 1.62e-49 | 93 |
hematopoietic system | 9.45e-47 | 98 |
blood island | 9.45e-47 | 98 |
skeletal system | 1.01e-45 | 100 |
hemolymphoid system | 5.61e-42 | 108 |
musculoskeletal system | 2.34e-25 | 167 |
lateral plate mesoderm | 6.37e-20 | 203 |
connective tissue | 2.94e-11 | 371 |
mesoderm | 6.73e-11 | 315 |
mesoderm-derived structure | 6.73e-11 | 315 |
presumptive mesoderm | 6.73e-11 | 315 |
cranial nerve II | 4.09e-07 | 1 |
cranial nerve | 4.09e-07 | 1 |
nerve trunk | 4.09e-07 | 1 |
nerve connecting eye with brain | 4.09e-07 | 1 |
nerve | 4.09e-07 | 1 |
retinal neural layer | 4.09e-07 | 1 |
presumptive neural retina | 4.09e-07 | 1 |