FFCP PHASE1:Hg19::chr15:101459228..101459249,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:101459228..101459249,+
|short_description=p4@LRRK1
|description=CAGE_peak_4_at_LRRK1_5end
|association_with_transcript=-170bp_to_ENST00000388948_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79705 | |EntrezGene=79705 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18608 | |HGNC=18608 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-170bp_to_ENST00000388948_5end | |||
|cluster_id=chr15:101459228..101459249,+ | |||
|description=CAGE_peak_4_at_LRRK1_5end | |||
|id=chr15:101459228..101459249,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!1.02e-08!20;UBERON:0002619!2.56e-08!22;UBERON:0001869!4.51e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.85e-25;20!UBERON:0002619;8.51e-23;22!UBERON:0000956;8.43e-20;25!UBERON:0000203;8.43e-20;25!UBERON:0001893;1.71e-17;34!UBERON:0001869;1.79e-17;32!UBERON:0003528;3.12e-15;34!UBERON:0002020;3.12e-15;34!UBERON:0002791;8.83e-15;32!UBERON:0000200;1.35e-14;6!UBERON:0001872;1.87e-11;5!UBERON:0002780;1.00e-09;41!UBERON:0001890;1.00e-09;41!UBERON:0001871;6.74e-08;6!UBERON:0002771;1.75e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,6.63e-26,20;UBERON:0002619,2.27e-23,22;UBERON:0001869,8.22e-21,32;UBERON:0000956,2.66e-20,25;UBERON:0000203,2.66e-20,25;UBERON:0001893,2.11e-19,34;UBERON:0002791,6.27e-18,32;UBERON:0003528,1.05e-16,34;UBERON:0002020,1.05e-16,34;UBERON:0002780,1.55e-15,41;UBERON:0001890,1.55e-15,41;UBERON:0003080,1.55e-15,41;UBERON:0006240,1.55e-15,41;UBERON:0000200,6.29e-15,6;UBERON:0000955,1.54e-13,68;UBERON:0006238,1.54e-13,68;UBERON:0003056,2.84e-12,61;UBERON:0001872,1.07e-11,5;UBERON:0000073,2.91e-11,53;UBERON:0002616,2.91e-11,53;UBERON:0001017,1.13e-10,81;UBERON:0001049,1.76e-10,56;UBERON:0005068,1.76e-10,56;UBERON:0006241,1.76e-10,56;UBERON:0007135,1.76e-10,56;UBERON:0002346,7.46e-10,86;UBERON:0003075,2.54e-09,82;UBERON:0007284,2.54e-09,82;UBERON:0001016,3.52e-09,89;UBERON:0007023,3.61e-09,114;UBERON:0010371,2.67e-08,104;UBERON:0001871,3.35e-08,6;UBERON:0002771,7.88e-08,2;UBERON:0004121,1.07e-07,171;UBERON:0000924,1.07e-07,171;UBERON:0006601,1.07e-07,171 | |||
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| ||
|short_description=p4@LRRK1 | |||
}} | }} |
Latest revision as of 22:21, 16 September 2015
Short description: | p4@LRRK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LRRK1_5end |
Coexpression cluster: | NA |
Association with transcript: | -170bp_to_ENST00000388948_5end |
EntrezGene: | LRRK1 |
HGNC: | 18608 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 6.63e-26 | 20 |
regional part of cerebral cortex | 2.27e-23 | 22 |
cerebral hemisphere | 8.22e-21 | 32 |
cerebral cortex | 2.66e-20 | 25 |
pallium | 2.66e-20 | 25 |
telencephalon | 2.11e-19 | 34 |
regional part of telencephalon | 6.27e-18 | 32 |
brain grey matter | 1.05e-16 | 34 |
gray matter | 1.05e-16 | 34 |
regional part of forebrain | 1.55e-15 | 41 |
forebrain | 1.55e-15 | 41 |
anterior neural tube | 1.55e-15 | 41 |
future forebrain | 1.55e-15 | 41 |
gyrus | 6.29e-15 | 6 |
brain | 1.54e-13 | 68 |
future brain | 1.54e-13 | 68 |
pre-chordal neural plate | 2.84e-12 | 61 |
parietal lobe | 1.07e-11 | 5 |
regional part of nervous system | 2.91e-11 | 53 |
regional part of brain | 2.91e-11 | 53 |
central nervous system | 1.13e-10 | 81 |
neural tube | 1.76e-10 | 56 |
neural rod | 1.76e-10 | 56 |
future spinal cord | 1.76e-10 | 56 |
neural keel | 1.76e-10 | 56 |
neurectoderm | 7.46e-10 | 86 |
neural plate | 2.54e-09 | 82 |
presumptive neural plate | 2.54e-09 | 82 |
nervous system | 3.52e-09 | 89 |
adult organism | 3.61e-09 | 114 |
ecto-epithelium | 2.67e-08 | 104 |
temporal lobe | 3.35e-08 | 6 |
middle temporal gyrus | 7.88e-08 | 2 |
ectoderm-derived structure | 1.07e-07 | 171 |
ectoderm | 1.07e-07 | 171 |
presumptive ectoderm | 1.07e-07 | 171 |