FF:10420-106C6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005237 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005237 | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |accession_numbers=CAGE;DRX007863;DRR008735;DRZ000160;DRZ001545;DRZ011510;DRZ012895 | ||
|accession_numbers_RNASeq=RNA-Seq;DRX057120;DRR062879;DRZ007955 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001052,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251,CL:0002253 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101913,FF:0101120,FF:0100167,FF:0100797,FF:0101532,FF:0101914,FF:0101616,FF:0102047 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr13:28543431..28543487,-!p1@CDX2!2.92!831.37!CDX2;;chr13:28543285..28543314,-!p2@CDX2!2.73!537.29!CDX2;;chr13:28541477..28541493,-!p6@CDX2!2.32!207.30!CDX2;;chr13:72441315..72441454,-!p1@DACH1!2.27!357.69!DACH1;;chr13:28541455..28541475,-!p7@CDX2!2.07!115.34!CDX2;;chr13:28543316..28543329,-!p4@CDX2!2.05!111.66!CDX2;;chr8:128747757..128747800,+!p7@MYC!1.94!115.55!MYC;;chr13:28543388..28543406,-!p3@CDX2!1.92!82.01!CDX2;;chr10:119302232..119302265,+!p1@EMX2!1.72!51.93!EMX2;;chr13:28543253..28543276,-!p5@CDX2!1.71!50.42!CDX2;;chr12:24102576..24102623,-!p2@SOX5!1.69!48.25!SOX5;;chr13:72441074..72441172,-!p2@DACH1!1.64!43.06!DACH1;;chr12:54785074..54785122,-!p2@ZNF385A!1.60!59.29!ZNF385A;;chr4:109090075..109090095,-!p2@LEF1!1.52!32.03!LEF1;;chr12:54348655..54348693,+!p1@HOXC12!1.50!30.29!HOXC12;;chr13:28543409..28543420,-!p8@CDX2!1.44!26.40!CDX2;;chr10:119302268..119302282,+!p4@EMX2!1.40!24.24!EMX2;;chr17:48072574..48072597,-!p1@DLX3!1.39!23.80!DLX3;;chr17:46682321..46682362,-!p1@HOXB6!1.36!22.07!HOXB6;;chr2:172967621..172967637,-!p1@DLX2!1.35!56.48!DLX2;;chr2:16080659..16080685,+!p1@MYCN!1.35!21.64!MYCN;;chr2:177001290..177001315,+!p1@HOXD3!1.35!21.21!HOXD3;;chr8:128748308..128748324,+!p2@MYC!1.32!537.94!MYC;;chr2:145275947..145275981,-!p10@ZEB2!1.32!19.91!ZEB2;;chr5:134369905..134369972,-!p1@PITX1!1.31!29.86!PITX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!19.04!HOXC5;;chr18:53257001..53257015,-!p5@TCF4!1.27!29.86!TCF4;;chr8:128747729..128747748,+!p14@MYC!1.27!17.74!MYC;;chr15:57511609..57511651,+!p2@TCF12!1.24!27.48!TCF12;;chr21:40033695..40033712,-!p6@ERG!1.24!16.23!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.23!18.83!MECOM;;chr12:54785054..54785072,-!p4@ZNF385A!1.22!17.74!ZNF385A;;chr8:128750654..128750793,+!p3@MYC!1.18!56.48!MYC;;chr18:53257027..53257052,-!p3@TCF4!1.17!55.18!TCF4;;chr3:185823495..185823511,-!p12@ETV5!1.17!13.63!ETV5;;chr3:25470062..25470084,+!p4@RARB!1.16!13.42!RARB;;chr4:109089901..109089930,-!p3@LEF1!1.15!12.98!LEF1;;chr8:128748470..128748487,+!p1@MYC!1.14!1379.91!MYC;;chr2:180726058..180726098,-!p3@ZNF385B!1.14!12.77!ZNF385B;;chr4:111558135..111558198,-!p2@PITX2!1.14!12.77!PITX2;;chr1:170633348..170633399,+!p2@PRRX1!1.13!17.09!PRRX1;;chr3:63953435..63953499,+!p1@ATXN7!1.13!12.55!ATXN7;;chrX:85403445..85403479,+!p2@DACH2!1.12!12.33!DACH2;;chr10:70320074..70320106,+!p1@TET1!1.11!24.02!TET1;;chr8:128750175..128750201,+!p8@MYC!1.11!20.77!MYC;;chr13:28494130..28494168,+!p1@PDX1!1.11!11.90!PDX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.10!11.68!PKNOX2;;chr15:57511589..57511608,+!p4@TCF12!1.10!11.68!TCF12;;chr11:16133391..16133439,-!p6@SOX6!1.10!11.47!SOX6;;chr8:128749984..128750033,+!p4@MYC!1.09!40.68!MYC;;chr8:128750143..128750160,+!p19@MYC!1.09!12.55!MYC;;chr17:42295777..42295816,-!p7@UBTF!1.08!13.42!UBTF;;chr8:128747661..128747703,+!p6@MYC!1.07!14.71!MYC;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.07!10.82!ZBED1;;chr16:54964740..54964789,+!p1@IRX5!1.06!15.36!IRX5;;chr14:29234581..29234601,+!p2@FOXG1!1.06!10.60!FOXG1;;chr2:180726040..180726052,-!p2@ZNF385B!1.06!10.39!ZNF385B;;chr4:109089996..109090012,-!p5@LEF1!1.05!10.17!LEF1;;chr11:8102749..8102769,+!p2@TUB!1.03!18.83!TUB;;chr18:52989565..52989623,-!p9@TCF4!1.03!12.33!TCF4;;chr18:53252911..53252918,-!p106@TCF4!1.03!9.74!TCF4;;chr14:21994337..21994442,-!p1@SALL2!1.00!25.10!SALL2;;chr2:71127699..71127744,+!p1@VAX2!1.00!19.04!VAX2;;chr12:54393880..54393962,+!p1@HOXC9!1.00!9.09!HOXC9;;chr17:46806067..46806097,-!p1@HOXB13!1.00!9.09!HOXB13;;chr12:54332608..54332636,+!p1@HOXC13!0.99!8.87!HOXC13;;chrX:84499081..84499115,+!p2@ZNF711!0.98!12.77!ZNF711;;chr8:128752771..128752843,+!p9@MYC!0.98!12.55!MYC;;chr7:97840743..97840786,+!p1@BHLHA15!0.98!8.66!BHLHA15;;chr3:25469724..25469773,+!p1@RARB!0.97!12.12!RARB;;chr9:127533519..127533573,-!p2@NR6A1!0.97!10.17!NR6A1;;chr4:109090106..109090124,-!p10@LEF1!0.97!8.44!LEF1;;chr8:106330656..106330684,+!p1@ZFPM2!0.96!21.64!ZFPM2;;chr6:144329531..144329546,-!p5@PLAGL1!0.96!12.98!PLAGL1;;chr12:54366894..54366922,+!p2@HOXC11!0.96!8.22!HOXC11;;chr2:176969228..176969260,+!p1@HOXD11!0.96!8.22!HOXD11;;chr2:177001268..177001287,+!p3@HOXD3!0.96!8.22!HOXD3;;chr3:141747459..141747475,-!p1@TFDP2!0.95!68.16!TFDP2;;chr2:19558373..19558392,-!p1@OSR1!0.95!22.29!OSR1;;chr1:170632137..170632172,+!p10@PRRX1!0.95!8.01!PRRX1;;chr18:53256971..53256984,-!p26@TCF4!0.95!8.01!TCF4;;chr8:128750983..128751021,+!p11@MYC!0.94!11.04!MYC;;chr14:37131058..37131139,+!p1@PAX9!0.94!7.79!PAX9;;chr8:37553292..37553317,+!p1@ZNF703!0.93!183.06!ZNF703;;chr14:21994449..21994524,-!p2@SALL2!0.93!22.94!SALL2;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.66!PRRX1;;chr21:40032581..40032605,-!p4@ERG!0.93!7.57!ERG;;chr12:115121962..115121987,-!p1@TBX3!0.92!64.27!TBX3;;chr12:53614115..53614154,-!p1@RARG!0.92!41.11!RARG;;chr17:46806098..46806118,-!p3@HOXB13!0.92!7.36!HOXB13;;chr2:60780607..60780624,-!p2@BCL11A!0.91!22.94!BCL11A;;chr18:52989031..52989079,-!p2@TCF4!0.91!17.53!TCF4;;chr12:54366949..54366973,+!p3@HOXC1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| |expression_enrichment_score=chr13:28543431..28543487,-!p1@CDX2!2.92!831.37!CDX2;;chr13:28543285..28543314,-!p2@CDX2!2.73!537.29!CDX2;;chr13:28541477..28541493,-!p6@CDX2!2.32!207.30!CDX2;;chr13:72441315..72441454,-!p1@DACH1!2.27!357.69!DACH1;;chr13:28541455..28541475,-!p7@CDX2!2.07!115.34!CDX2;;chr13:28543316..28543329,-!p4@CDX2!2.05!111.66!CDX2;;chr8:128747757..128747800,+!p7@MYC!1.94!115.55!MYC;;chr13:28543388..28543406,-!p3@CDX2!1.92!82.01!CDX2;;chr10:119302232..119302265,+!p1@EMX2!1.72!51.93!EMX2;;chr13:28543253..28543276,-!p5@CDX2!1.71!50.42!CDX2;;chr12:24102576..24102623,-!p2@SOX5!1.69!48.25!SOX5;;chr13:72441074..72441172,-!p2@DACH1!1.64!43.06!DACH1;;chr12:54785074..54785122,-!p2@ZNF385A!1.60!59.29!ZNF385A;;chr4:109090075..109090095,-!p2@LEF1!1.52!32.03!LEF1;;chr12:54348655..54348693,+!p1@HOXC12!1.50!30.29!HOXC12;;chr13:28543409..28543420,-!p8@CDX2!1.44!26.40!CDX2;;chr10:119302268..119302282,+!p4@EMX2!1.40!24.24!EMX2;;chr17:48072574..48072597,-!p1@DLX3!1.39!23.80!DLX3;;chr17:46682321..46682362,-!p1@HOXB6!1.36!22.07!HOXB6;;chr2:172967621..172967637,-!p1@DLX2!1.35!56.48!DLX2;;chr2:16080659..16080685,+!p1@MYCN!1.35!21.64!MYCN;;chr2:177001290..177001315,+!p1@HOXD3!1.35!21.21!HOXD3;;chr8:128748308..128748324,+!p2@MYC!1.32!537.94!MYC;;chr2:145275947..145275981,-!p10@ZEB2!1.32!19.91!ZEB2;;chr5:134369905..134369972,-!p1@PITX1!1.31!29.86!PITX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!19.04!HOXC5;;chr18:53257001..53257015,-!p5@TCF4!1.27!29.86!TCF4;;chr8:128747729..128747748,+!p14@MYC!1.27!17.74!MYC;;chr15:57511609..57511651,+!p2@TCF12!1.24!27.48!TCF12;;chr21:40033695..40033712,-!p6@ERG!1.24!16.23!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.23!18.83!MECOM;;chr12:54785054..54785072,-!p4@ZNF385A!1.22!17.74!ZNF385A;;chr8:128750654..128750793,+!p3@MYC!1.18!56.48!MYC;;chr18:53257027..53257052,-!p3@TCF4!1.17!55.18!TCF4;;chr3:185823495..185823511,-!p12@ETV5!1.17!13.63!ETV5;;chr3:25470062..25470084,+!p4@RARB!1.16!13.42!RARB;;chr4:109089901..109089930,-!p3@LEF1!1.15!12.98!LEF1;;chr8:128748470..128748487,+!p1@MYC!1.14!1379.91!MYC;;chr2:180726058..180726098,-!p3@ZNF385B!1.14!12.77!ZNF385B;;chr4:111558135..111558198,-!p2@PITX2!1.14!12.77!PITX2;;chr1:170633348..170633399,+!p2@PRRX1!1.13!17.09!PRRX1;;chr3:63953435..63953499,+!p1@ATXN7!1.13!12.55!ATXN7;;chrX:85403445..85403479,+!p2@DACH2!1.12!12.33!DACH2;;chr10:70320074..70320106,+!p1@TET1!1.11!24.02!TET1;;chr8:128750175..128750201,+!p8@MYC!1.11!20.77!MYC;;chr13:28494130..28494168,+!p1@PDX1!1.11!11.90!PDX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.10!11.68!PKNOX2;;chr15:57511589..57511608,+!p4@TCF12!1.10!11.68!TCF12;;chr11:16133391..16133439,-!p6@SOX6!1.10!11.47!SOX6;;chr8:128749984..128750033,+!p4@MYC!1.09!40.68!MYC;;chr8:128750143..128750160,+!p19@MYC!1.09!12.55!MYC;;chr17:42295777..42295816,-!p7@UBTF!1.08!13.42!UBTF;;chr8:128747661..128747703,+!p6@MYC!1.07!14.71!MYC;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.07!10.82!ZBED1;;chr16:54964740..54964789,+!p1@IRX5!1.06!15.36!IRX5;;chr14:29234581..29234601,+!p2@FOXG1!1.06!10.60!FOXG1;;chr2:180726040..180726052,-!p2@ZNF385B!1.06!10.39!ZNF385B;;chr4:109089996..109090012,-!p5@LEF1!1.05!10.17!LEF1;;chr11:8102749..8102769,+!p2@TUB!1.03!18.83!TUB;;chr18:52989565..52989623,-!p9@TCF4!1.03!12.33!TCF4;;chr18:53252911..53252918,-!p106@TCF4!1.03!9.74!TCF4;;chr14:21994337..21994442,-!p1@SALL2!1.00!25.10!SALL2;;chr2:71127699..71127744,+!p1@VAX2!1.00!19.04!VAX2;;chr12:54393880..54393962,+!p1@HOXC9!1.00!9.09!HOXC9;;chr17:46806067..46806097,-!p1@HOXB13!1.00!9.09!HOXB13;;chr12:54332608..54332636,+!p1@HOXC13!0.99!8.87!HOXC13;;chrX:84499081..84499115,+!p2@ZNF711!0.98!12.77!ZNF711;;chr8:128752771..128752843,+!p9@MYC!0.98!12.55!MYC;;chr7:97840743..97840786,+!p1@BHLHA15!0.98!8.66!BHLHA15;;chr3:25469724..25469773,+!p1@RARB!0.97!12.12!RARB;;chr9:127533519..127533573,-!p2@NR6A1!0.97!10.17!NR6A1;;chr4:109090106..109090124,-!p10@LEF1!0.97!8.44!LEF1;;chr8:106330656..106330684,+!p1@ZFPM2!0.96!21.64!ZFPM2;;chr6:144329531..144329546,-!p5@PLAGL1!0.96!12.98!PLAGL1;;chr12:54366894..54366922,+!p2@HOXC11!0.96!8.22!HOXC11;;chr2:176969228..176969260,+!p1@HOXD11!0.96!8.22!HOXD11;;chr2:177001268..177001287,+!p3@HOXD3!0.96!8.22!HOXD3;;chr3:141747459..141747475,-!p1@TFDP2!0.95!68.16!TFDP2;;chr2:19558373..19558392,-!p1@OSR1!0.95!22.29!OSR1;;chr1:170632137..170632172,+!p10@PRRX1!0.95!8.01!PRRX1;;chr18:53256971..53256984,-!p26@TCF4!0.95!8.01!TCF4;;chr8:128750983..128751021,+!p11@MYC!0.94!11.04!MYC;;chr14:37131058..37131139,+!p1@PAX9!0.94!7.79!PAX9;;chr8:37553292..37553317,+!p1@ZNF703!0.93!183.06!ZNF703;;chr14:21994449..21994524,-!p2@SALL2!0.93!22.94!SALL2;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.66!PRRX1;;chr21:40032581..40032605,-!p4@ERG!0.93!7.57!ERG;;chr12:115121962..115121987,-!p1@TBX3!0.92!64.27!TBX3;;chr12:53614115..53614154,-!p1@RARG!0.92!41.11!RARG;;chr17:46806098..46806118,-!p3@HOXB13!0.92!7.36!HOXB13;;chr2:60780607..60780624,-!p2@BCL11A!0.91!22.94!BCL11A;;chr18:52989031..52989079,-!p2@TCF4!0.91!17.53!TCF4;;chr12:54366949..54366973,+!p3@HOXC1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| ||
|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0010316 | |||
|fonse_cell_line=FF:0101120,FF:0101532 | |fonse_cell_line=FF:0101120,FF:0101532 | ||
|fonse_cell_line_closure=FF:0101120,FF:0101532 | |fonse_cell_line_closure=FF:0101120,FF:0101532 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCOLO-320.CNhs10737.10420-106C6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCOLO-320.CNhs10737.10420-106C6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCOLO-320.CNhs10737.10420-106C6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCOLO-320.CNhs10737.10420-106C6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCOLO-320.CNhs10737.10420-106C6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10420-106C6 | |id=FF:10420-106C6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102047 | ||
|is_obsolete= | |||
|library_id=CNhs10737 | |||
|library_id_phase_based=2:CNhs10737 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10420 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10420 | |||
|name=colon carcinoma cell line:COLO-320 | |name=colon carcinoma cell line:COLO-320 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10737,LSID691,release008,COMPLETED | |profile_hcage=CNhs10737,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.075245674615904,0.085072355470482,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0.042536177735241,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.275417883130906,0,0,0,0,0,0,0,0,0.0183211566224066,0,0,0,0,0,-0.0241336441298038,0,0.0591863247524164,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.085072355470482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26299172810469,-0.126125047225386,0,0,0,0.156178685995022,-0.0980353512377064,-0.095941023065654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0182842509249502,0,0,0,-0.204900672442429,-0.636938075366489,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.156178685995022,0.58127276401359,0,0,0,0,0,0,0,0,0.28177316293962,0,0.234452303598338,0.127292812173352,0,0,0.751148058857936,0,0,0,0,0.085072355470482,0,0,0.156178685995022,0,-0.0430475114820827,0,0.311000181729206,0.0672442749162804,0,0,0,-0.0179907460339425,0.569105781493225,0,-0.096168718151999,0.250124615478935,0,0,0,0,-0.119072315935861,0,-0.120879483793741,0.134544183003027,-0.221611588102807,-0.0053486138363285,0.170459692434065,0,0,0,-0.630368420465726,-0.348262358673804,0,0,-0.121779851751874,0.624062993653745,0,0,0.886799640466419,0,-0.684107732291282,-0.234946171461688,0,0.0580074747276321,0,0,0,0,0,0,0,0,0.085072355470482,0,0,-0.0574934668214365,-0.00851972012266583,0,0.085072355470482,0.156178685995022,0,-0.15342984862449,0,0.0258306627652439,-0.0548172794002638,-0.194557327301837,0.148687114638817,0.164019225260227,0,-0.0851253756834685,-0.0258199332414073,-0.284892226892851,0.0439882014588328,-0.147401849371139,-0.189981719549847,0,-0.0733532642863,0.124395795825093,0.00473260540293309,-0.447582465312998,-0.0252584668556524,-0.332440120162296,-0.285084074195488,0,0.156178685995022,-0.0775089264793031,-0.0385980913549189,0,0,-0.171645837920471,-0.099073865124743,-0.0507222430997945,-0.260658817474113,-0.0588398079287305,0.0526928722797295,1.08165192631434,-0.24017210157015,0,0.209116434602393,0,0,0.00732125236380055,-0.142647902233127,0.217906865947604,-0.010581376763818,0.0528600860884064,0.48088383683376,0.0167280943931138,0,0.328658709490229,-0.0310304023273815,0,0,-0.217364497552891,0,0,0,0.0986025718278875,0,0.138176927756484,-0.268684188333343,-0.0766768755605233,0.0439413342235711,0.090519147366591,0,-0.0471756396937123,0,0.266691331767758,0.0101687885376273,0.140713201267107,-0.0218258498994122,0,0.127778313353293,0.288114949808884,-0.0799183408685208,-0.337322449921255,0.816131185579807,-0.294132881614359,-0.103135855335465,0.387715720342245,-0.788939864790226,0.098044358196202,-0.0881268324752877,0,0.30062550450896,-0.679498131621524,0,0.0618259822461165,0,-0.452403239917367,0,0.0976612464452065,0,-0.379745249349122,-0.384255065478219,0.395925004539899,0.220790553511786,0,-0.154837379839789,-0.0983786395217066,0,-0.0551200218455357,0,0.469453483375919,-0.0652947278641573,0.212972458426522,0.149762305453932,0.19665937987331,0,0.0844978540019756,0,0,-0.0241251586254538,0.0829928387919144,0,0.167708435537185,-0.00395811779853505,-0.103995159877546,0.0402076125600875,0,0,-0.489521651997703,0,0,-0.0246552998044406,0.085072355470482,0.201474965616825,-0.253326341486756,0.0118912435465781,0.778746486005269,0,0,-0.177527765965176,0,-0.0890249488191855,0,0,-0.048110680585431,-0.116628112990133,0,0,0.776478802716984,0,0,0,0,0,0.078089342997511,0,0,-0.506567475945997,0.437090705419818,0,-0.0377160735160044,0,0,0,0,0,-0.110803081130275,0,0,0.102020335887465,-0.01284052476532,0.0331612703186012,0,0,0,0,-0.215723402553475,0.266216921281195,0.085072355470482,-0.131862706497632,0,0,0,0,0.0700376962058102,0,0,0,0,-0.057730457053664,-0.187434955904447,0,0,0,-0.191882046131308,0,0,0,0,0.0218120051439974,0,0,-0.124491589141307,0.0520146784785846,0.0569546420455807,0.236886997009462,0,0.0462274659055758,-0.435203093739857,-0.780668302423277,0,0,-0.261347131789888,0,0,0.387856103362769,0,0,0.135253910048905,0,0,0,0,0.13093929021355,0,-0.0581358264047341,0,0,0,0,0,0,0,0.156178685995022,0,0,0,-0.411001836415959,0.125040294667934,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.027521458214971,0,0,0,0,0,0,0,0,0.133818856751619,0,0,0,0,0,0.0591863247524164,0,0.085072355470482,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277170632372737,-0.494541601873127,0,0.085072355470482,0,0,0,0.085072355470482,0,-0.27483329820609,0,0,0,0,-0.0288120182384952,0,0,0,0.476476379224433,0,-0.075245674615904,0,0,0,0,0,0,0.18070636665926,0,0,0,0,0,0,0,0,0,0,0,0.042536177735241,0,0,-0.275637841855989,0,-0.212716364340908,-0.0688028975135992,0,0,-0.12399617696982,0,0,0,0,0,0,0.0772917516346955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0188317497496738,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.372688068516159,0,0,0,0,0,0,0.315687411999023,-0.162594879090395,-0.00402001986646655,0,0,0,-0.054385572482455,0,0,0,0,0.0182949680515807,0,0,0,0,0,0,0,0,0.085072355470482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.042536177735241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.085072355470482,0,0,0,0,0,0,0,0.0440779797220945,0.085072355470482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.320356511479913,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.394325356520691,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0637398555966102,0,0,0,0,0,0,0,0,0,0,0.042536177735241,0,0,-0.0974319222934835,0,0,-0.318028478722954,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 79: | ||
|rna_tube_id=106C6 | |rna_tube_id=106C6 | ||
|rna_weight_ug=59.2795 | |rna_weight_ug=59.2795 | ||
|rnaseq_library_id=RDhi10063 | |||
|sample_age=55 | |sample_age=55 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1193 | |sample_cell_catalog=RCB1193 | ||
|sample_cell_line=COLO-320 | |sample_cell_line=COLO-320 | ||
| Line 69: | Line 94: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.57299191384997e-298!GO:0043231;intracellular membrane-bound organelle;1.01444862551249e-272!GO:0043227;membrane-bound organelle;1.44148998014524e-272!GO:0043226;organelle;2.40985794724633e-270!GO:0043229;intracellular organelle;1.58131987550884e-269!GO:0044422;organelle part;3.07506010963693e-178!GO:0044446;intracellular organelle part;1.16313471861877e-176!GO:0005737;cytoplasm;1.38709656694002e-165!GO:0005634;nucleus;4.15420770617396e-135!GO:0044444;cytoplasmic part;1.34664991273851e-125!GO:0044238;primary metabolic process;1.42578577082708e-120!GO:0044237;cellular metabolic process;3.33413293328197e-120!GO:0032991;macromolecular complex;6.1281922337381e-113!GO:0043170;macromolecule metabolic process;1.92047776993028e-109!GO:0043233;organelle lumen;3.32081693132764e-99!GO:0031974;membrane-enclosed lumen;3.32081693132764e-99!GO:0044428;nuclear part;7.85431907671311e-99!GO:0030529;ribonucleoprotein complex;2.37876864985981e-97!GO:0003723;RNA binding;1.8887412693536e-91!GO:0005739;mitochondrion;6.14803665281938e-85!GO:0043283;biopolymer metabolic process;1.77267652762786e-77!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.11020131620661e-74!GO:0010467;gene expression;2.36641992230259e-71!GO:0006396;RNA processing;5.51282168590933e-66!GO:0031981;nuclear lumen;1.29862495311319e-60!GO:0003676;nucleic acid binding;1.17093233554086e-58!GO:0044429;mitochondrial part;2.15456586902738e-56!GO:0043234;protein complex;9.12891892949495e-56!GO:0005840;ribosome;1.21230629353231e-55!GO:0005515;protein binding;6.71567335218982e-55!GO:0031090;organelle membrane;8.39666363395097e-53!GO:0006412;translation;5.32845324114709e-51!GO:0016071;mRNA metabolic process;9.55778536578132e-49!GO:0031967;organelle envelope;1.52897209108213e-48!GO:0006259;DNA metabolic process;1.65387526320086e-48!GO:0031975;envelope;2.20078140815955e-48!GO:0003735;structural constituent of ribosome;7.10468968090297e-47!GO:0033036;macromolecule localization;1.08420484488024e-46!GO:0015031;protein transport;2.14911359962995e-46!GO:0016043;cellular component organization and biogenesis;6.02683449649524e-46!GO:0008380;RNA splicing;5.75261085959048e-44!GO:0006397;mRNA processing;1.3483206838751e-43!GO:0008104;protein localization;4.84219249347128e-42!GO:0019538;protein metabolic process;2.29031681496801e-41!GO:0045184;establishment of protein localization;5.93773449611155e-41!GO:0009058;biosynthetic process;1.64705374530659e-40!GO:0016070;RNA metabolic process;1.76926296064599e-40!GO:0043228;non-membrane-bound organelle;1.88309323571543e-40!GO:0043232;intracellular non-membrane-bound organelle;1.88309323571543e-40!GO:0044249;cellular biosynthetic process;2.1074640848252e-40!GO:0006996;organelle organization and biogenesis;2.90975625767311e-40!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.80179457198459e-39!GO:0033279;ribosomal subunit;8.98349218657328e-39!GO:0005654;nucleoplasm;3.23414023487577e-38!GO:0009059;macromolecule biosynthetic process;2.23291691639162e-37!GO:0044260;cellular macromolecule metabolic process;2.93504410779675e-37!GO:0044267;cellular protein metabolic process;4.60262456972268e-37!GO:0046907;intracellular transport;8.48795647816561e-37!GO:0065003;macromolecular complex assembly;1.23689801584077e-35!GO:0007049;cell cycle;3.0518525999903e-35!GO:0000166;nucleotide binding;1.05176928347042e-34!GO:0005740;mitochondrial envelope;1.85830725919916e-33!GO:0006886;intracellular protein transport;1.52092217715564e-32!GO:0031966;mitochondrial membrane;1.12169607475074e-31!GO:0019866;organelle inner membrane;2.24192052085619e-31!GO:0044451;nucleoplasm part;6.53674920766535e-31!GO:0005681;spliceosome;1.22231704517546e-30!GO:0022607;cellular component assembly;2.6330178175917e-30!GO:0005829;cytosol;1.44933304298266e-29!GO:0005743;mitochondrial inner membrane;4.247230063145e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.16007721329411e-28!GO:0006974;response to DNA damage stimulus;7.72440036103315e-28!GO:0031980;mitochondrial lumen;1.27915775396594e-27!GO:0005759;mitochondrial matrix;1.27915775396594e-27!GO:0005694;chromosome;5.57687261998087e-27!GO:0022402;cell cycle process;9.49463458460415e-27!GO:0016462;pyrophosphatase activity;4.46428905544566e-26!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.17326616604944e-26!GO:0016817;hydrolase activity, acting on acid anhydrides;5.54889755705226e-26!GO:0051276;chromosome organization and biogenesis;1.60665508412238e-25!GO:0051649;establishment of cellular localization;7.85565006236198e-25!GO:0006281;DNA repair;1.64588117259057e-24!GO:0017111;nucleoside-triphosphatase activity;1.81432209090881e-24!GO:0051641;cellular localization;2.93101196262867e-24!GO:0016874;ligase activity;1.41708977648643e-23!GO:0005730;nucleolus;3.33641311825522e-23!GO:0006512;ubiquitin cycle;8.11388843150072e-23!GO:0044427;chromosomal part;8.6395867257254e-23!GO:0044445;cytosolic part;1.2584574679296e-22!GO:0000278;mitotic cell cycle;2.5527099265645e-22!GO:0006457;protein folding;1.03429194984029e-21!GO:0051301;cell division;1.10434011137789e-21!GO:0006119;oxidative phosphorylation;1.5299963196746e-21!GO:0032553;ribonucleotide binding;1.62979547137427e-21!GO:0032555;purine ribonucleotide binding;1.62979547137427e-21!GO:0017076;purine nucleotide binding;2.24419558158112e-21!GO:0022618;protein-RNA complex assembly;4.00662451379792e-21!GO:0008135;translation factor activity, nucleic acid binding;5.91765960641313e-21!GO:0044455;mitochondrial membrane part;6.76805071291777e-21!GO:0012505;endomembrane system;1.18727362415511e-20!GO:0006325;establishment and/or maintenance of chromatin architecture;5.09287034675302e-20!GO:0015935;small ribosomal subunit;5.17281242398035e-20!GO:0015934;large ribosomal subunit;6.78714619929842e-20!GO:0005524;ATP binding;1.35748249147861e-19!GO:0006323;DNA packaging;2.80833670363163e-19!GO:0044265;cellular macromolecule catabolic process;4.41871042841841e-19!GO:0032559;adenyl ribonucleotide binding;4.90187347646984e-19!GO:0022403;cell cycle phase;6.63679059896499e-19!GO:0030554;adenyl nucleotide binding;9.50691220186598e-19!GO:0006511;ubiquitin-dependent protein catabolic process;9.91502204938215e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;1.05014611320325e-18!GO:0019941;modification-dependent protein catabolic process;1.85978044521898e-18!GO:0043632;modification-dependent macromolecule catabolic process;1.85978044521898e-18!GO:0016887;ATPase activity;2.48095838929986e-18!GO:0042254;ribosome biogenesis and assembly;2.90797701388612e-18!GO:0044257;cellular protein catabolic process;3.45359419261762e-18!GO:0006260;DNA replication;3.98785047466814e-18!GO:0031965;nuclear membrane;4.28254366818087e-18!GO:0000087;M phase of mitotic cell cycle;5.31566844642256e-18!GO:0008134;transcription factor binding;5.95774363370455e-18!GO:0009719;response to endogenous stimulus;6.08119226956263e-18!GO:0043285;biopolymer catabolic process;7.10126312866322e-18!GO:0042623;ATPase activity, coupled;9.82445081586607e-18!GO:0007067;mitosis;1.72940227496407e-17!GO:0006605;protein targeting;2.29405928011858e-17!GO:0044453;nuclear membrane part;8.85906767066682e-17!GO:0044248;cellular catabolic process;2.11853655867206e-16!GO:0000279;M phase;2.25081504379203e-16!GO:0005783;endoplasmic reticulum;2.5784125651371e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;3.41647427361689e-16!GO:0000375;RNA splicing, via transesterification reactions;3.41647427361689e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.41647427361689e-16!GO:0044432;endoplasmic reticulum part;3.45718941494987e-16!GO:0009057;macromolecule catabolic process;6.45640388883587e-16!GO:0005746;mitochondrial respiratory chain;8.04355530635677e-16!GO:0004386;helicase activity;1.27629892213767e-15!GO:0005635;nuclear envelope;1.30840782791226e-15!GO:0005761;mitochondrial ribosome;1.3974430631002e-15!GO:0000313;organellar ribosome;1.3974430631002e-15!GO:0043412;biopolymer modification;9.4167952293168e-15!GO:0005643;nuclear pore;9.4167952293168e-15!GO:0051082;unfolded protein binding;1.3848215286251e-14!GO:0003743;translation initiation factor activity;2.04913963983085e-14!GO:0048770;pigment granule;2.1370547014454e-14!GO:0042470;melanosome;2.1370547014454e-14!GO:0051186;cofactor metabolic process;2.32227241002735e-14!GO:0030163;protein catabolic process;2.46887229078718e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.28756531869097e-14!GO:0016604;nuclear body;3.84778263489086e-14!GO:0006399;tRNA metabolic process;4.36158799237096e-14!GO:0016568;chromatin modification;5.4251435808225e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.02048055873469e-14!GO:0050136;NADH dehydrogenase (quinone) activity;6.69282586312085e-14!GO:0003954;NADH dehydrogenase activity;6.69282586312085e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.69282586312085e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.9904396855377e-14!GO:0051726;regulation of cell cycle;1.02047801489319e-13!GO:0000074;regulation of progression through cell cycle;1.12607765034026e-13!GO:0006403;RNA localization;1.84832528922905e-13!GO:0050657;nucleic acid transport;1.96743102211002e-13!GO:0051236;establishment of RNA localization;1.96743102211002e-13!GO:0050658;RNA transport;1.96743102211002e-13!GO:0006413;translational initiation;2.14312371208403e-13!GO:0006913;nucleocytoplasmic transport;3.5023861898504e-13!GO:0000502;proteasome complex (sensu Eukaryota);4.72412633625377e-13!GO:0048193;Golgi vesicle transport;5.5830309620132e-13!GO:0051169;nuclear transport;9.84187800457569e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.45876115881401e-12!GO:0042773;ATP synthesis coupled electron transport;1.45876115881401e-12!GO:0006364;rRNA processing;1.91340539859233e-12!GO:0016607;nuclear speck;2.51751686256334e-12!GO:0008026;ATP-dependent helicase activity;2.61023336303347e-12!GO:0006446;regulation of translational initiation;2.81120930814732e-12!GO:0006464;protein modification process;3.14836701725866e-12!GO:0006333;chromatin assembly or disassembly;3.46173322516009e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.89593227973033e-12!GO:0016072;rRNA metabolic process;3.97750905997763e-12!GO:0065002;intracellular protein transport across a membrane;4.10437417110497e-12!GO:0006366;transcription from RNA polymerase II promoter;4.25211933159747e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.44020494698409e-12!GO:0030964;NADH dehydrogenase complex (quinone);5.50630712133454e-12!GO:0045271;respiratory chain complex I;5.50630712133454e-12!GO:0005747;mitochondrial respiratory chain complex I;5.50630712133454e-12!GO:0000785;chromatin;5.85756332216965e-12!GO:0046930;pore complex;7.57652486194236e-12!GO:0065004;protein-DNA complex assembly;8.55738535826663e-12!GO:0003712;transcription cofactor activity;8.97321169739302e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.10669917311169e-12!GO:0006732;coenzyme metabolic process;9.44834599479996e-12!GO:0005789;endoplasmic reticulum membrane;1.06316855914431e-11!GO:0043687;post-translational protein modification;1.31633624889171e-11!GO:0005794;Golgi apparatus;1.51680113658805e-11!GO:0008565;protein transporter activity;2.32490165014237e-11!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.50780834328275e-11!GO:0019222;regulation of metabolic process;3.50352633261435e-11!GO:0051028;mRNA transport;4.99184240524718e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.0362713991932e-10!GO:0015630;microtubule cytoskeleton;1.26408947706685e-10!GO:0006163;purine nucleotide metabolic process;1.68426139237033e-10!GO:0009259;ribonucleotide metabolic process;1.82812471254111e-10!GO:0006350;transcription;1.9026273403103e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.96659550804647e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.96659550804647e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.96659550804647e-10!GO:0043038;amino acid activation;3.5840640300764e-10!GO:0006418;tRNA aminoacylation for protein translation;3.5840640300764e-10!GO:0043039;tRNA aminoacylation;3.5840640300764e-10!GO:0016779;nucleotidyltransferase activity;3.89830438603311e-10!GO:0045333;cellular respiration;4.29165917006908e-10!GO:0008639;small protein conjugating enzyme activity;4.96203159509733e-10!GO:0006164;purine nucleotide biosynthetic process;7.54833514999471e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.54833514999471e-10!GO:0017038;protein import;1.02061923847802e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.14653719032226e-09!GO:0004842;ubiquitin-protein ligase activity;1.16417511831114e-09!GO:0019787;small conjugating protein ligase activity;1.42108022470923e-09!GO:0009060;aerobic respiration;1.98773176869935e-09!GO:0009260;ribonucleotide biosynthetic process;2.30042246022485e-09!GO:0009056;catabolic process;2.58853070348057e-09!GO:0031323;regulation of cellular metabolic process;2.64815036737387e-09!GO:0000775;chromosome, pericentric region;2.89992500114163e-09!GO:0005813;centrosome;2.93997986738479e-09!GO:0009150;purine ribonucleotide metabolic process;4.05708759737319e-09!GO:0006461;protein complex assembly;4.61802724102944e-09!GO:0005815;microtubule organizing center;5.3935582778874e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.35443487412582e-09!GO:0006261;DNA-dependent DNA replication;7.70488470807482e-09!GO:0016740;transferase activity;1.08244169895461e-08!GO:0005667;transcription factor complex;1.11279055116413e-08!GO:0051188;cofactor biosynthetic process;1.32836561390479e-08!GO:0043566;structure-specific DNA binding;1.33594735677938e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.90095484489823e-08!GO:0050794;regulation of cellular process;2.1706393892592e-08!GO:0010468;regulation of gene expression;2.42756337723665e-08!GO:0005819;spindle;2.56463015765464e-08!GO:0015986;ATP synthesis coupled proton transport;2.64476529608348e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.64476529608348e-08!GO:0016192;vesicle-mediated transport;3.15734725059992e-08!GO:0009141;nucleoside triphosphate metabolic process;3.37266078439883e-08!GO:0016881;acid-amino acid ligase activity;3.52593322389074e-08!GO:0019829;cation-transporting ATPase activity;3.59816961864282e-08!GO:0032774;RNA biosynthetic process;3.92662158634388e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.0357252445018e-08!GO:0003677;DNA binding;4.46884741157888e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.15207053311896e-08!GO:0006351;transcription, DNA-dependent;5.7409556711732e-08!GO:0003697;single-stranded DNA binding;5.8243831048491e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.93872906711762e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.93872906711762e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.86357267574725e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.86357267574725e-08!GO:0003899;DNA-directed RNA polymerase activity;7.96411595906778e-08!GO:0005793;ER-Golgi intermediate compartment;1.00174715192574e-07!GO:0000245;spliceosome assembly;1.00951052865268e-07!GO:0007005;mitochondrion organization and biogenesis;1.1675254563816e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.17292714764552e-07!GO:0016787;hydrolase activity;1.23561402128174e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.37181058349239e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.37181058349239e-07!GO:0006099;tricarboxylic acid cycle;1.58097464750613e-07!GO:0046356;acetyl-CoA catabolic process;1.58097464750613e-07!GO:0006084;acetyl-CoA metabolic process;1.98077455041822e-07!GO:0032446;protein modification by small protein conjugation;2.03594769858491e-07!GO:0009055;electron carrier activity;2.12775579043634e-07!GO:0051329;interphase of mitotic cell cycle;2.22469647377411e-07!GO:0006334;nucleosome assembly;2.28093421635715e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.28093421635715e-07!GO:0046034;ATP metabolic process;2.30440419633498e-07!GO:0000151;ubiquitin ligase complex;2.60736748463535e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.61445043718955e-07!GO:0000075;cell cycle checkpoint;2.64790557349075e-07!GO:0031497;chromatin assembly;2.66423844344689e-07!GO:0006754;ATP biosynthetic process;2.99846141956855e-07!GO:0006753;nucleoside phosphate metabolic process;2.99846141956855e-07!GO:0003682;chromatin binding;3.09229858339273e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.19617443653438e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.78654596741272e-07!GO:0016567;protein ubiquitination;4.26996603104802e-07!GO:0007051;spindle organization and biogenesis;4.31124000751238e-07!GO:0003713;transcription coactivator activity;4.53513905477462e-07!GO:0005657;replication fork;4.85899650885068e-07!GO:0009108;coenzyme biosynthetic process;5.44690548698491e-07!GO:0008094;DNA-dependent ATPase activity;5.70526604149224e-07!GO:0016853;isomerase activity;6.34217671213315e-07!GO:0043623;cellular protein complex assembly;6.72592194893474e-07!GO:0005768;endosome;7.59164992019189e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.71630096344435e-07!GO:0051170;nuclear import;9.15994400569476e-07!GO:0048475;coated membrane;1.0374396423088e-06!GO:0030117;membrane coat;1.0374396423088e-06!GO:0006752;group transfer coenzyme metabolic process;1.04198706358888e-06!GO:0045259;proton-transporting ATP synthase complex;1.08375958244866e-06!GO:0045449;regulation of transcription;1.2792657693252e-06!GO:0009109;coenzyme catabolic process;1.4761393316121e-06!GO:0051325;interphase;1.48265484020864e-06!GO:0051168;nuclear export;1.72068016656946e-06!GO:0003724;RNA helicase activity;2.06776716874655e-06!GO:0016563;transcription activator activity;2.09918402595415e-06!GO:0030120;vesicle coat;2.23460167419671e-06!GO:0030662;coated vesicle membrane;2.23460167419671e-06!GO:0016741;transferase activity, transferring one-carbon groups;2.34460556482806e-06!GO:0008168;methyltransferase activity;2.36920875672325e-06!GO:0051427;hormone receptor binding;2.41837560765211e-06!GO:0006613;cotranslational protein targeting to membrane;2.4647935191517e-06!GO:0006606;protein import into nucleus;2.62292515930408e-06!GO:0045786;negative regulation of progression through cell cycle;3.02336478648303e-06!GO:0005788;endoplasmic reticulum lumen;3.41323306060062e-06!GO:0005798;Golgi-associated vesicle;3.54818966488034e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.63996888247243e-06!GO:0009117;nucleotide metabolic process;4.04274408519087e-06!GO:0051187;cofactor catabolic process;4.62808678627795e-06!GO:0035257;nuclear hormone receptor binding;4.82001369654291e-06!GO:0016859;cis-trans isomerase activity;5.35614375541022e-06!GO:0016363;nuclear matrix;5.86339340802743e-06!GO:0015980;energy derivation by oxidation of organic compounds;6.01124227468549e-06!GO:0044431;Golgi apparatus part;7.35736890631663e-06!GO:0008654;phospholipid biosynthetic process;8.1270142126626e-06!GO:0005762;mitochondrial large ribosomal subunit;8.59995151497395e-06!GO:0000315;organellar large ribosomal subunit;8.59995151497395e-06!GO:0044440;endosomal part;8.70097138706061e-06!GO:0010008;endosome membrane;8.70097138706061e-06!GO:0006355;regulation of transcription, DNA-dependent;8.83700299188335e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.0155083976783e-05!GO:0044452;nucleolar part;1.08805028738738e-05!GO:0006302;double-strand break repair;1.1565209301151e-05!GO:0008033;tRNA processing;1.31213913406684e-05!GO:0031324;negative regulation of cellular metabolic process;1.98175377700657e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.32077066184167e-05!GO:0006352;transcription initiation;2.35658627673375e-05!GO:0005770;late endosome;2.3708391662911e-05!GO:0006839;mitochondrial transport;2.47357945253402e-05!GO:0043021;ribonucleoprotein binding;2.65610762906843e-05!GO:0007059;chromosome segregation;2.74824008363671e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.18808254840048e-05!GO:0000776;kinetochore;3.24572994078804e-05!GO:0016564;transcription repressor activity;3.24825589799479e-05!GO:0006793;phosphorus metabolic process;3.39561194557378e-05!GO:0006796;phosphate metabolic process;3.39561194557378e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.55097836553588e-05!GO:0006612;protein targeting to membrane;3.76603911523327e-05!GO:0030880;RNA polymerase complex;3.8110969008594e-05!GO:0003690;double-stranded DNA binding;3.8394026927257e-05!GO:0006383;transcription from RNA polymerase III promoter;4.02206826298779e-05!GO:0015631;tubulin binding;4.14620025890521e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.35087095455608e-05!GO:0051052;regulation of DNA metabolic process;4.42991500086465e-05!GO:0003684;damaged DNA binding;4.44723691604611e-05!GO:0050789;regulation of biological process;4.90821427634551e-05!GO:0003924;GTPase activity;5.15439003948858e-05!GO:0000314;organellar small ribosomal subunit;5.57672984633424e-05!GO:0005763;mitochondrial small ribosomal subunit;5.57672984633424e-05!GO:0019899;enzyme binding;6.51412917466169e-05!GO:0016251;general RNA polymerase II transcription factor activity;6.78165360173204e-05!GO:0003702;RNA polymerase II transcription factor activity;7.17825441806347e-05!GO:0008186;RNA-dependent ATPase activity;7.62134119504678e-05!GO:0019752;carboxylic acid metabolic process;7.71920956336527e-05!GO:0055029;nuclear DNA-directed RNA polymerase complex;7.77972851560628e-05!GO:0000428;DNA-directed RNA polymerase complex;7.77972851560628e-05!GO:0003714;transcription corepressor activity;7.84593819007145e-05!GO:0000059;protein import into nucleus, docking;7.84867423312139e-05!GO:0006082;organic acid metabolic process;8.28990481054465e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;8.86729849495918e-05!GO:0015399;primary active transmembrane transporter activity;8.86729849495918e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000105593870209063!GO:0006626;protein targeting to mitochondrion;0.000107766082954961!GO:0003678;DNA helicase activity;0.000109017886786351!GO:0006402;mRNA catabolic process;0.000114123622220383!GO:0043681;protein import into mitochondrion;0.000121572926152082!GO:0009892;negative regulation of metabolic process;0.00012865286435844!GO:0003729;mRNA binding;0.000129667872676443!GO:0031988;membrane-bound vesicle;0.000171039183465706!GO:0016310;phosphorylation;0.000188532001021067!GO:0016481;negative regulation of transcription;0.000195006871788561!GO:0003746;translation elongation factor activity;0.000198516773648805!GO:0006310;DNA recombination;0.000207185882462176!GO:0046489;phosphoinositide biosynthetic process;0.000226799068056201!GO:0005839;proteasome core complex (sensu Eukaryota);0.000234481412898715!GO:0004004;ATP-dependent RNA helicase activity;0.000242788072483513!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000245990583726977!GO:0019783;small conjugating protein-specific protease activity;0.000248353196079422!GO:0031982;vesicle;0.000249908444177214!GO:0016023;cytoplasmic membrane-bound vesicle;0.000256939105605173!GO:0006414;translational elongation;0.0002736628462376!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000273984635357535!GO:0032508;DNA duplex unwinding;0.000276060477621338!GO:0032392;DNA geometric change;0.000276060477621338!GO:0006091;generation of precursor metabolites and energy;0.00028082895805809!GO:0007052;mitotic spindle organization and biogenesis;0.000291015171662286!GO:0000049;tRNA binding;0.00029979404093879!GO:0005876;spindle microtubule;0.000310300111321305!GO:0030867;rough endoplasmic reticulum membrane;0.000312274461495282!GO:0005525;GTP binding;0.000318673109870981!GO:0005048;signal sequence binding;0.000322343259552492!GO:0000922;spindle pole;0.000327459210644214!GO:0030521;androgen receptor signaling pathway;0.00034348920266052!GO:0006338;chromatin remodeling;0.000343840617025276!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000354362619340845!GO:0031072;heat shock protein binding;0.000363559877217178!GO:0000786;nucleosome;0.000389229257826533!GO:0006401;RNA catabolic process;0.000394144632213499!GO:0046474;glycerophospholipid biosynthetic process;0.00039808366845594!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00040832203902975!GO:0008022;protein C-terminus binding;0.000414880242302221!GO:0006405;RNA export from nucleus;0.000420341324037488!GO:0031410;cytoplasmic vesicle;0.000425365095148014!GO:0000139;Golgi membrane;0.000435747725364266!GO:0004527;exonuclease activity;0.000439407992205782!GO:0004843;ubiquitin-specific protease activity;0.000441312366234247!GO:0035258;steroid hormone receptor binding;0.000485418369096773!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000493908556521863!GO:0016491;oxidoreductase activity;0.000511139754409762!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000520715757447653!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000535110631837732!GO:0004221;ubiquitin thiolesterase activity;0.000562254693754016!GO:0008276;protein methyltransferase activity;0.00059610759319703!GO:0006144;purine base metabolic process;0.000601286682395873!GO:0004518;nuclease activity;0.000604507708843414!GO:0006520;amino acid metabolic process;0.000640814764142223!GO:0051246;regulation of protein metabolic process;0.000655166510405027!GO:0043492;ATPase activity, coupled to movement of substances;0.000666072628808485!GO:0048500;signal recognition particle;0.000709710375267882!GO:0051920;peroxiredoxin activity;0.000718732127022076!GO:0000228;nuclear chromosome;0.000727819977640383!GO:0016790;thiolester hydrolase activity;0.000751701311602771!GO:0009112;nucleobase metabolic process;0.000759799936431923!GO:0005874;microtubule;0.000785669354174523!GO:0004298;threonine endopeptidase activity;0.00080438925931328!GO:0004674;protein serine/threonine kinase activity;0.000814744357957271!GO:0046483;heterocycle metabolic process;0.000814744357957271!GO:0006611;protein export from nucleus;0.000845140774441869!GO:0031968;organelle outer membrane;0.000869461029271782!GO:0005769;early endosome;0.000877037855356636!GO:0008312;7S RNA binding;0.000893189150206212!GO:0051087;chaperone binding;0.000896071728348076!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000897765985629908!GO:0050662;coenzyme binding;0.000923147398546655!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000925779213314734!GO:0007093;mitotic cell cycle checkpoint;0.000976741919466752!GO:0051287;NAD binding;0.000989632975115166!GO:0019867;outer membrane;0.00100500431522967!GO:0006289;nucleotide-excision repair;0.00102314490193514!GO:0048037;cofactor binding;0.00103534034565504!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00110719679755129!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00114657869364962!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00114657869364962!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00114657869364962!GO:0007088;regulation of mitosis;0.00115848347611504!GO:0048471;perinuclear region of cytoplasm;0.00117308779622984!GO:0009165;nucleotide biosynthetic process;0.0012063589163321!GO:0045045;secretory pathway;0.0012063589163321!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00126137384655361!GO:0030134;ER to Golgi transport vesicle;0.00135269499180183!GO:0006268;DNA unwinding during replication;0.00137315371943137!GO:0006891;intra-Golgi vesicle-mediated transport;0.00145777309433414!GO:0005684;U2-dependent spliceosome;0.00152117567633868!GO:0007017;microtubule-based process;0.0015423481524939!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0015583753994153!GO:0032561;guanyl ribonucleotide binding;0.00159998899288592!GO:0019001;guanyl nucleotide binding;0.00159998899288592!GO:0008017;microtubule binding;0.00166915071377416!GO:0007050;cell cycle arrest;0.00168282400994835!GO:0030518;steroid hormone receptor signaling pathway;0.00168282400994835!GO:0007006;mitochondrial membrane organization and biogenesis;0.00173797995958551!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00177615930954248!GO:0006284;base-excision repair;0.00182135244404944!GO:0030658;transport vesicle membrane;0.00184877264170445!GO:0032200;telomere organization and biogenesis;0.00188839203126916!GO:0000723;telomere maintenance;0.00188839203126916!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0021319916746772!GO:0045047;protein targeting to ER;0.0021319916746772!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00215316935529547!GO:0009451;RNA modification;0.00223482142268706!GO:0031124;mRNA 3'-end processing;0.00226039944995976!GO:0008287;protein serine/threonine phosphatase complex;0.00229929907220553!GO:0000287;magnesium ion binding;0.0023098646421343!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0023098646421343!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00236703534028723!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00236703534028723!GO:0048523;negative regulation of cellular process;0.00237281138978461!GO:0006497;protein amino acid lipidation;0.00243734984138975!GO:0012501;programmed cell death;0.00244660095670783!GO:0006915;apoptosis;0.00257743527048882!GO:0005669;transcription factor TFIID complex;0.00258209548509091!GO:0005741;mitochondrial outer membrane;0.0025964334434463!GO:0046467;membrane lipid biosynthetic process;0.0026391652870502!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00265928606322308!GO:0030663;COPI coated vesicle membrane;0.00265928606322308!GO:0030126;COPI vesicle coat;0.00265928606322308!GO:0051789;response to protein stimulus;0.00267662211082814!GO:0006986;response to unfolded protein;0.00267662211082814!GO:0005637;nuclear inner membrane;0.0027027412302955!GO:0003711;transcription elongation regulator activity;0.00277522663316381!GO:0030127;COPII vesicle coat;0.0028302751045101!GO:0012507;ER to Golgi transport vesicle membrane;0.0028302751045101!GO:0030176;integral to endoplasmic reticulum membrane;0.00285350225944808!GO:0006378;mRNA polyadenylation;0.00297469796255892!GO:0016126;sterol biosynthetic process;0.0030653064768601!GO:0009303;rRNA transcription;0.0030653064768601!GO:0000819;sister chromatid segregation;0.00307948589362563!GO:0045454;cell redox homeostasis;0.00316031575498725!GO:0030660;Golgi-associated vesicle membrane;0.00326534631238458!GO:0030384;phosphoinositide metabolic process;0.00357172724425448!GO:0006818;hydrogen transport;0.00365384358287263!GO:0043596;nuclear replication fork;0.00369044426346259!GO:0033116;ER-Golgi intermediate compartment membrane;0.00375916537656865!GO:0016407;acetyltransferase activity;0.00375916537656865!GO:0008139;nuclear localization sequence binding;0.00375916537656865!GO:0030133;transport vesicle;0.00384722263583432!GO:0051540;metal cluster binding;0.00385387134215661!GO:0051536;iron-sulfur cluster binding;0.00385387134215661!GO:0051539;4 iron, 4 sulfur cluster binding;0.00385387134215661!GO:0016584;nucleosome positioning;0.00387869119065442!GO:0043284;biopolymer biosynthetic process;0.00392009794396387!GO:0005758;mitochondrial intermembrane space;0.00394019947512287!GO:0000178;exosome (RNase complex);0.00396860800832213!GO:0000725;recombinational repair;0.00405138176588577!GO:0000724;double-strand break repair via homologous recombination;0.00405138176588577!GO:0004576;oligosaccharyl transferase activity;0.00417071502329237!GO:0009116;nucleoside metabolic process;0.00429741734961906!GO:0006506;GPI anchor biosynthetic process;0.0043142448637024!GO:0044450;microtubule organizing center part;0.00436038437084881!GO:0008610;lipid biosynthetic process;0.00459736249797365!GO:0015992;proton transport;0.00469724956715051!GO:0006270;DNA replication initiation;0.00469838935155884!GO:0042393;histone binding;0.00479621690311684!GO:0031123;RNA 3'-end processing;0.00482592753488352!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00493953192869896!GO:0006695;cholesterol biosynthetic process;0.00499308511379306!GO:0006519;amino acid and derivative metabolic process;0.00504386279629076!GO:0006505;GPI anchor metabolic process;0.00507936794065068!GO:0000070;mitotic sister chromatid segregation;0.00510733554780112!GO:0008250;oligosaccharyl transferase complex;0.00511782925094161!GO:0000910;cytokinesis;0.00512971651416539!GO:0006607;NLS-bearing substrate import into nucleus;0.005198593903363!GO:0008234;cysteine-type peptidase activity;0.00521145713882777!GO:0008097;5S rRNA binding;0.00526444165483046!GO:0048487;beta-tubulin binding;0.00526444165483046!GO:0000339;RNA cap binding;0.00526444165483046!GO:0008180;signalosome;0.0052684394182041!GO:0006275;regulation of DNA replication;0.00531593971573499!GO:0022406;membrane docking;0.0053260526505312!GO:0048278;vesicle docking;0.0053260526505312!GO:0016272;prefoldin complex;0.00544024669614879!GO:0006400;tRNA modification;0.00566653498471318!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00579954893230188!GO:0005791;rough endoplasmic reticulum;0.00589782661773679!GO:0006541;glutamine metabolic process;0.00589833155274638!GO:0030118;clathrin coat;0.00592387363757201!GO:0006220;pyrimidine nucleotide metabolic process;0.00616713382480118!GO:0042054;histone methyltransferase activity;0.00622515849017286!GO:0031570;DNA integrity checkpoint;0.00631188015221224!GO:0004722;protein serine/threonine phosphatase activity;0.00651769772015002!GO:0008219;cell death;0.00657244581597949!GO:0016265;death;0.00657244581597949!GO:0000082;G1/S transition of mitotic cell cycle;0.00678962958150254!GO:0031970;organelle envelope lumen;0.00684282700487466!GO:0042158;lipoprotein biosynthetic process;0.00705302078177023!GO:0006904;vesicle docking during exocytosis;0.00739717589728055!GO:0005773;vacuole;0.0074072114154243!GO:0006595;polyamine metabolic process;0.00773951730267253!GO:0065009;regulation of a molecular function;0.0081698509137652!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00834213170553491!GO:0000096;sulfur amino acid metabolic process;0.00834213170553491!GO:0051252;regulation of RNA metabolic process;0.00835219318563474!GO:0000781;chromosome, telomeric region;0.00848505429063494!GO:0016279;protein-lysine N-methyltransferase activity;0.00852301194434692!GO:0018024;histone-lysine N-methyltransferase activity;0.00852301194434692!GO:0016278;lysine N-methyltransferase activity;0.00852301194434692!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00857693415613548!GO:0000152;nuclear ubiquitin ligase complex;0.0088128343504931!GO:0007004;telomere maintenance via telomerase;0.00889003809990464!GO:0019843;rRNA binding;0.008894821334757!GO:0046966;thyroid hormone receptor binding;0.00906351551513874!GO:0005832;chaperonin-containing T-complex;0.00906351551513874!GO:0043601;nuclear replisome;0.0092616032700115!GO:0030894;replisome;0.0092616032700115!GO:0043022;ribosome binding;0.00958763323720511!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00958763323720511!GO:0015002;heme-copper terminal oxidase activity;0.00958763323720511!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00958763323720511!GO:0004129;cytochrome-c oxidase activity;0.00958763323720511!GO:0004003;ATP-dependent DNA helicase activity;0.00961344443171743!GO:0005663;DNA replication factor C complex;0.00994127592444902!GO:0043631;RNA polyadenylation;0.0101453775837232!GO:0006650;glycerophospholipid metabolic process;0.0101499166787585!GO:0009081;branched chain family amino acid metabolic process;0.0103073298927573!GO:0030137;COPI-coated vesicle;0.0107070443428996!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0108224872992418!GO:0030145;manganese ion binding;0.0109328259318882!GO:0005885;Arp2/3 protein complex;0.0114067889471923!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0115663732526778!GO:0043624;cellular protein complex disassembly;0.0115781601739151!GO:0030522;intracellular receptor-mediated signaling pathway;0.011751777425998!GO:0044262;cellular carbohydrate metabolic process;0.0118622002241108!GO:0045892;negative regulation of transcription, DNA-dependent;0.0120034286716727!GO:0000726;non-recombinational repair;0.0121164249330936!GO:0050681;androgen receptor binding;0.0121754433830359!GO:0004532;exoribonuclease activity;0.0122654536710924!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0122654536710924!GO:0032259;methylation;0.0125658686033224!GO:0051128;regulation of cellular component organization and biogenesis;0.0126811668682309!GO:0005869;dynactin complex;0.0132898847835425!GO:0006376;mRNA splice site selection;0.0134252476088755!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0134252476088755!GO:0006379;mRNA cleavage;0.0138996529987662!GO:0018196;peptidyl-asparagine modification;0.0148542134431621!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0148542134431621!GO:0008536;Ran GTPase binding;0.0152776584440124!GO:0000086;G2/M transition of mitotic cell cycle;0.0153420675494812!GO:0032984;macromolecular complex disassembly;0.0153636533166409!GO:0007021;tubulin folding;0.0156753545190338!GO:0007010;cytoskeleton organization and biogenesis;0.0157239836034818!GO:0000323;lytic vacuole;0.0157239836034818!GO:0005764;lysosome;0.0157239836034818!GO:0047485;protein N-terminus binding;0.0157906496913261!GO:0009083;branched chain family amino acid catabolic process;0.0164236981623894!GO:0000793;condensed chromosome;0.0164236981623894!GO:0000118;histone deacetylase complex;0.0168644833846423!GO:0009113;purine base biosynthetic process;0.017524867236812!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0176717240117242!GO:0000792;heterochromatin;0.0177197801421296!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0181004974674346!GO:0044438;microbody part;0.0183668186712104!GO:0044439;peroxisomal part;0.0183668186712104!GO:0016408;C-acyltransferase activity;0.0183725132778861!GO:0003725;double-stranded RNA binding;0.0186322737058594!GO:0043414;biopolymer methylation;0.0186589702297941!GO:0046112;nucleobase biosynthetic process;0.0187387624857168!GO:0022890;inorganic cation transmembrane transporter activity;0.0191417692080388!GO:0006278;RNA-dependent DNA replication;0.0192190040534097!GO:0008652;amino acid biosynthetic process;0.0192418664500046!GO:0000209;protein polyubiquitination;0.0193790364423067!GO:0000077;DNA damage checkpoint;0.01956791773913!GO:0008270;zinc ion binding;0.0204645099332618!GO:0016788;hydrolase activity, acting on ester bonds;0.0205175509268273!GO:0031625;ubiquitin protein ligase binding;0.020812286046922!GO:0000097;sulfur amino acid biosynthetic process;0.021139667659801!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0215337346978571!GO:0044454;nuclear chromosome part;0.0217121394787707!GO:0006301;postreplication repair;0.022104507878826!GO:0016579;protein deubiquitination;0.022590706680303!GO:0007569;cell aging;0.0229663952714129!GO:0035267;NuA4 histone acetyltransferase complex;0.0235100286534132!GO:0048519;negative regulation of biological process;0.0241859887671184!GO:0043189;H4/H2A histone acetyltransferase complex;0.0242372209693687!GO:0005784;translocon complex;0.0247069876435679!GO:0032039;integrator complex;0.0250890770146511!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0262226754524609!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0262226754524609!GO:0030119;AP-type membrane coat adaptor complex;0.0262636413853446!GO:0008408;3'-5' exonuclease activity;0.0263362746140927!GO:0007040;lysosome organization and biogenesis;0.0263925665367568!GO:0008170;N-methyltransferase activity;0.0264548188671666!GO:0051297;centrosome organization and biogenesis;0.0264548188671666!GO:0031023;microtubule organizing center organization and biogenesis;0.0264548188671666!GO:0006730;one-carbon compound metabolic process;0.0266562795607163!GO:0046983;protein dimerization activity;0.027739226001514!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0283289480241382!GO:0003756;protein disulfide isomerase activity;0.0283289480241382!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0283289480241382!GO:0008601;protein phosphatase type 2A regulator activity;0.0283506655358932!GO:0000123;histone acetyltransferase complex;0.0284177496902071!GO:0030496;midbody;0.0284511995068507!GO:0033673;negative regulation of kinase activity;0.0285907259057408!GO:0006469;negative regulation of protein kinase activity;0.0285907259057408!GO:0031647;regulation of protein stability;0.0285980814234329!GO:0043241;protein complex disassembly;0.0292475725499665!GO:0045947;negative regulation of translational initiation;0.0296601790031053!GO:0031903;microbody membrane;0.0300734286887635!GO:0005778;peroxisomal membrane;0.0300734286887635!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0305326782467484!GO:0045039;protein import into mitochondrial inner membrane;0.0305326782467484!GO:0030131;clathrin adaptor complex;0.030666803277937!GO:0006892;post-Golgi vesicle-mediated transport;0.0307924178737425!GO:0009066;aspartate family amino acid metabolic process;0.0308163275657848!GO:0033170;DNA-protein loading ATPase activity;0.0317997209700148!GO:0003689;DNA clamp loader activity;0.0317997209700148!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0326964694126648!GO:0010257;NADH dehydrogenase complex assembly;0.0326964694126648!GO:0033108;mitochondrial respiratory chain complex assembly;0.0326964694126648!GO:0006984;ER-nuclear signaling pathway;0.0326964694126648!GO:0040029;regulation of gene expression, epigenetic;0.0334845503035702!GO:0009124;nucleoside monophosphate biosynthetic process;0.0334845503035702!GO:0009123;nucleoside monophosphate metabolic process;0.0334845503035702!GO:0022411;cellular component disassembly;0.0341104939585811!GO:0004659;prenyltransferase activity;0.0345275588610737!GO:0046128;purine ribonucleoside metabolic process;0.0347300583436797!GO:0042278;purine nucleoside metabolic process;0.0347300583436797!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0361540372823578!GO:0001522;pseudouridine synthesis;0.0363307630305231!GO:0001824;blastocyst development;0.0364070617937639!GO:0003923;GPI-anchor transamidase activity;0.0365128884938531!GO:0016255;attachment of GPI anchor to protein;0.0365128884938531!GO:0042765;GPI-anchor transamidase complex;0.0365128884938531!GO:0031577;spindle checkpoint;0.0367318642357185!GO:0065007;biological regulation;0.0367723181643044!GO:0003887;DNA-directed DNA polymerase activity;0.0367777394645072!GO:0031252;leading edge;0.0371936525471644!GO:0051348;negative regulation of transferase activity;0.0374461742986056!GO:0032040;small subunit processome;0.0379785634656142!GO:0051338;regulation of transferase activity;0.0382868402314251!GO:0005680;anaphase-promoting complex;0.0383792959402328!GO:0005881;cytoplasmic microtubule;0.0385359686748555!GO:0005658;alpha DNA polymerase:primase complex;0.0389028111962728!GO:0031371;ubiquitin conjugating enzyme complex;0.0390510116293627!GO:0006779;porphyrin biosynthetic process;0.0390510116293627!GO:0033014;tetrapyrrole biosynthetic process;0.0390510116293627!GO:0022415;viral reproductive process;0.0390510116293627!GO:0046914;transition metal ion binding;0.0391670239208908!GO:0008538;proteasome activator activity;0.0392023904295849!GO:0000119;mediator complex;0.0392765166632143!GO:0043488;regulation of mRNA stability;0.0398746266015764!GO:0043487;regulation of RNA stability;0.0398746266015764!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0399273382187021!GO:0006415;translational termination;0.0399804858941315!GO:0042770;DNA damage response, signal transduction;0.0403263707892333!GO:0006740;NADPH regeneration;0.0403263707892333!GO:0006098;pentose-phosphate shunt;0.0403263707892333!GO:0009067;aspartate family amino acid biosynthetic process;0.0403263707892333!GO:0004239;methionyl aminopeptidase activity;0.0408883286959032!GO:0005675;holo TFIIH complex;0.0409228813604923!GO:0005854;nascent polypeptide-associated complex;0.0416640028792582!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0421700213256998!GO:0005754;mitochondrial proton-transporting ATP synthase, catalytic core;0.0423657124014352!GO:0000275;mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);0.0423657124014352!GO:0045267;proton-transporting ATP synthase, catalytic core;0.0423657124014352!GO:0006406;mRNA export from nucleus;0.0424419634934199!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0425584384411657!GO:0043130;ubiquitin binding;0.0425878836914594!GO:0032182;small conjugating protein binding;0.0425878836914594!GO:0006354;RNA elongation;0.0437668892933688!GO:0043549;regulation of kinase activity;0.0438949427554119!GO:0051053;negative regulation of DNA metabolic process;0.0456256577885466!GO:0031119;tRNA pseudouridine synthesis;0.0472322813756887!GO:0043407;negative regulation of MAP kinase activity;0.0475480750469728!GO:0007264;small GTPase mediated signal transduction;0.0475508730581799!GO:0005844;polysome;0.0479955834751035!GO:0031461;cullin-RING ubiquitin ligase complex;0.0483660570403629!GO:0004402;histone acetyltransferase activity;0.0495681061220289!GO:0004468;lysine N-acetyltransferase activity;0.0495681061220289!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0496699492588393!GO:0042809;vitamin D receptor binding;0.0498361366928624 | |||
|sample_id=10420 | |sample_id=10420 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 102: | ||
|sample_tissue=colon | |sample_tissue=colon | ||
|top_motifs=LEF1_TCF7_TCF7L1,2:3.53826628993;VSX1,2:2.66164219037;FOXQ1:2.53607197434;NFY{A,B,C}:2.23532385345;TEF:2.10010085453;PBX1:1.99794037035;NKX2-3_NKX2-5:1.97689240561;NRF1:1.9420634319;BREu{core}:1.87630325615;PDX1:1.74319585479;NKX6-1,2:1.72881655855;ZNF143:1.70725791503;PAX8:1.69594560509;E2F1..5:1.64751053712;ADNP_IRX_SIX_ZHX:1.55449713845;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.51508691988;AHR_ARNT_ARNT2:1.49302726441;bHLH_family:1.40575007524;YY1:1.34468392179;FOXN1:1.32844327621;CRX:1.29692979861;RBPJ:1.2937253827;NKX2-1,4:1.262133676;POU3F1..4:1.25327387293;ARID5B:1.22223715458;PAX3,7:1.21939881864;EN1,2:1.20588744286;ELK1,4_GABP{A,B1}:1.12381326484;ZFP161:1.12374398686;FOXA2:1.10342164362;HBP1_HMGB_SSRP1_UBTF:1.03287086218;PITX1..3:0.958099684538;FOX{I1,J2}:0.94154155863;HOXA9_MEIS1:0.927127980825;GFI1:0.913122585783;ALX1:0.910476331777;CDX1,2,4:0.827018912501;MYB:0.814804398648;HOX{A6,A7,B6,B7}:0.806389516773;TOPORS:0.761184244165;NR6A1:0.745190208031;TFDP1:0.729826235533;EVI1:0.704061571189;HOX{A5,B5}:0.699806717267;XBP1:0.600581559933;SOX17:0.586432831681;STAT1,3:0.573935113795;POU1F1:0.571014704521;FOXM1:0.562337495169;NANOG:0.534423381934;STAT5{A,B}:0.526984380336;CREB1:0.515206457935;PAX4:0.500790386917;GATA6:0.460045607102;CUX2:0.457609874809;NANOG{mouse}:0.43615358864;MEF2{A,B,C,D}:0.431736028761;AIRE:0.421698336856;RFX2..5_RFXANK_RFXAP:0.402040252364;TGIF1:0.391288144825;SOX{8,9,10}:0.385164427868;PRDM1:0.376682361546;KLF4:0.375237885964;SNAI1..3:0.374842837385;PPARG:0.372662911419;ZEB1:0.366278300865;BPTF:0.359147796139;POU2F1..3:0.344753428713;GATA4:0.331010201537;CDC5L:0.316754342669;OCT4_SOX2{dimer}:0.314644249414;HES1:0.307746522496;AR:0.302451540413;FOX{D1,D2}:0.28136764393;NR5A1,2:0.26687907373;FOXP1:0.256845507707;POU5F1:0.255352780199;RFX1:0.239213716663;HIF1A:0.218422545226;PRRX1,2:0.191579907619;ZBTB16:0.187883611054;LHX3,4:0.187577518461;IKZF1:0.185819216769;ESRRA:0.14645565542;ZIC1..3:0.125454904035;MYOD1:0.108392789099;T:0.0904552276818;GTF2I:0.0889239456495;LMO2:0.0699428406322;ONECUT1,2:0.068376591127;HAND1,2:0.054147192319;RORA:0.0465360210853;ATF5_CREB3:0.0458073933148;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.045360691967;SOX2:0.0395360581626;ATF4:0.0379604828059;DBP:-0.00303755273579;MYBL2:-0.0228598714444;MZF1:-0.046995713051;IKZF2:-0.0488261430524;HNF1A:-0.0589880621325;RREB1:-0.0745585080068;PAX2:-0.0832789969085;SP1:-0.0885244483575;SREBF1,2:-0.101416045098;GFI1B:-0.104996837824;HNF4A_NR2F1,2:-0.107447011131;MED-1{core}:-0.1252733284;ELF1,2,4:-0.132779161356;NHLH1,2:-0.167063220066;PAX6:-0.167740618189;HOX{A4,D4}:-0.172367457283;POU6F1:-0.17926069617;FOXP3:-0.185986263764;HMGA1,2:-0.188443216436;GTF2A1,2:-0.199165540711;TFAP2{A,C}:-0.222542988601;HIC1:-0.228476767197;PAX1,9:-0.235026639226;MYFfamily:-0.248531644474;FOX{F1,F2,J1}:-0.256036333258;PAX5:-0.26205738234;ZBTB6:-0.272487591217;NFIL3:-0.273692055173;FOSL2:-0.28454948874;ATF6:-0.290358481329;HLF:-0.294005915821;ATF2:-0.345767432355;NFKB1_REL_RELA:-0.388864102978;TLX2:-0.392862552777;PATZ1:-0.394322392166;TAL1_TCF{3,4,12}:-0.402438970131;SOX5:-0.413271409937;IRF7:-0.428344098919;NKX3-2:-0.429264394255;NFIX:-0.434123333347;DMAP1_NCOR{1,2}_SMARC:-0.445863932635;RUNX1..3:-0.453894259164;TFAP2B:-0.496598492936;EGR1..3:-0.505985881542;FOS_FOS{B,L1}_JUN{B,D}:-0.509879953172;TFAP4:-0.511286027919;CEBPA,B_DDIT3:-0.521092737271;FOXD3:-0.577759125777;SPIB:-0.590301819918;UFEwm:-0.606153948448;NFE2L2:-0.618826125846;NFE2:-0.648360225642;NKX3-1:-0.651458935667;TEAD1:-0.6582657243;SPI1:-0.677010496589;BACH2:-0.67876172525;MTE{core}:-0.686190252323;REST:-0.697045677559;EBF1:-0.702839472783;FOXO1,3,4:-0.733758792535;ZNF384:-0.750141047978;JUN:-0.794941540529;TLX1..3_NFIC{dimer}:-0.839500441447;GCM1,2:-0.84570382142;NR3C1:-0.876156120504;NKX2-2,8:-0.892557325888;SMAD1..7,9:-0.937885039573;NFATC1..3:-0.966986640434;TBP:-0.978430767268;XCPE1{core}:-0.99620127631;MAFB:-0.99785527233;IRF1,2:-1.00734321065;FOXL1:-1.0127587303;ETS1,2:-1.01903136134;ZNF238:-1.05885099662;MTF1:-1.06546871332;ALX4:-1.06795764866;GZF1:-1.07284555336;MAZ:-1.08865474516;RXR{A,B,G}:-1.09698949431;HSF1,2:-1.11850391887;TP53:-1.15754937655;ZNF148:-1.18982100179;NR1H4:-1.34380987574;ESR1:-1.34756386002;TBX4,5:-1.46169677784;GLI1..3:-1.51703278451;NFE2L1:-1.5783418277;SRF:-1.58839028171;RXRA_VDR{dimer}:-1.60277761184;STAT2,4,6:-1.62781881598;SPZ1:-1.79771536599;HMX1:-1.9341548219;EP300:-2.12562833946;TFCP2:-2.13000104565;ZNF423:-2.14639859329 | |top_motifs=LEF1_TCF7_TCF7L1,2:3.53826628993;VSX1,2:2.66164219037;FOXQ1:2.53607197434;NFY{A,B,C}:2.23532385345;TEF:2.10010085453;PBX1:1.99794037035;NKX2-3_NKX2-5:1.97689240561;NRF1:1.9420634319;BREu{core}:1.87630325615;PDX1:1.74319585479;NKX6-1,2:1.72881655855;ZNF143:1.70725791503;PAX8:1.69594560509;E2F1..5:1.64751053712;ADNP_IRX_SIX_ZHX:1.55449713845;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.51508691988;AHR_ARNT_ARNT2:1.49302726441;bHLH_family:1.40575007524;YY1:1.34468392179;FOXN1:1.32844327621;CRX:1.29692979861;RBPJ:1.2937253827;NKX2-1,4:1.262133676;POU3F1..4:1.25327387293;ARID5B:1.22223715458;PAX3,7:1.21939881864;EN1,2:1.20588744286;ELK1,4_GABP{A,B1}:1.12381326484;ZFP161:1.12374398686;FOXA2:1.10342164362;HBP1_HMGB_SSRP1_UBTF:1.03287086218;PITX1..3:0.958099684538;FOX{I1,J2}:0.94154155863;HOXA9_MEIS1:0.927127980825;GFI1:0.913122585783;ALX1:0.910476331777;CDX1,2,4:0.827018912501;MYB:0.814804398648;HOX{A6,A7,B6,B7}:0.806389516773;TOPORS:0.761184244165;NR6A1:0.745190208031;TFDP1:0.729826235533;EVI1:0.704061571189;HOX{A5,B5}:0.699806717267;XBP1:0.600581559933;SOX17:0.586432831681;STAT1,3:0.573935113795;POU1F1:0.571014704521;FOXM1:0.562337495169;NANOG:0.534423381934;STAT5{A,B}:0.526984380336;CREB1:0.515206457935;PAX4:0.500790386917;GATA6:0.460045607102;CUX2:0.457609874809;NANOG{mouse}:0.43615358864;MEF2{A,B,C,D}:0.431736028761;AIRE:0.421698336856;RFX2..5_RFXANK_RFXAP:0.402040252364;TGIF1:0.391288144825;SOX{8,9,10}:0.385164427868;PRDM1:0.376682361546;KLF4:0.375237885964;SNAI1..3:0.374842837385;PPARG:0.372662911419;ZEB1:0.366278300865;BPTF:0.359147796139;POU2F1..3:0.344753428713;GATA4:0.331010201537;CDC5L:0.316754342669;OCT4_SOX2{dimer}:0.314644249414;HES1:0.307746522496;AR:0.302451540413;FOX{D1,D2}:0.28136764393;NR5A1,2:0.26687907373;FOXP1:0.256845507707;POU5F1:0.255352780199;RFX1:0.239213716663;HIF1A:0.218422545226;PRRX1,2:0.191579907619;ZBTB16:0.187883611054;LHX3,4:0.187577518461;IKZF1:0.185819216769;ESRRA:0.14645565542;ZIC1..3:0.125454904035;MYOD1:0.108392789099;T:0.0904552276818;GTF2I:0.0889239456495;LMO2:0.0699428406322;ONECUT1,2:0.068376591127;HAND1,2:0.054147192319;RORA:0.0465360210853;ATF5_CREB3:0.0458073933148;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.045360691967;SOX2:0.0395360581626;ATF4:0.0379604828059;DBP:-0.00303755273579;MYBL2:-0.0228598714444;MZF1:-0.046995713051;IKZF2:-0.0488261430524;HNF1A:-0.0589880621325;RREB1:-0.0745585080068;PAX2:-0.0832789969085;SP1:-0.0885244483575;SREBF1,2:-0.101416045098;GFI1B:-0.104996837824;HNF4A_NR2F1,2:-0.107447011131;MED-1{core}:-0.1252733284;ELF1,2,4:-0.132779161356;NHLH1,2:-0.167063220066;PAX6:-0.167740618189;HOX{A4,D4}:-0.172367457283;POU6F1:-0.17926069617;FOXP3:-0.185986263764;HMGA1,2:-0.188443216436;GTF2A1,2:-0.199165540711;TFAP2{A,C}:-0.222542988601;HIC1:-0.228476767197;PAX1,9:-0.235026639226;MYFfamily:-0.248531644474;FOX{F1,F2,J1}:-0.256036333258;PAX5:-0.26205738234;ZBTB6:-0.272487591217;NFIL3:-0.273692055173;FOSL2:-0.28454948874;ATF6:-0.290358481329;HLF:-0.294005915821;ATF2:-0.345767432355;NFKB1_REL_RELA:-0.388864102978;TLX2:-0.392862552777;PATZ1:-0.394322392166;TAL1_TCF{3,4,12}:-0.402438970131;SOX5:-0.413271409937;IRF7:-0.428344098919;NKX3-2:-0.429264394255;NFIX:-0.434123333347;DMAP1_NCOR{1,2}_SMARC:-0.445863932635;RUNX1..3:-0.453894259164;TFAP2B:-0.496598492936;EGR1..3:-0.505985881542;FOS_FOS{B,L1}_JUN{B,D}:-0.509879953172;TFAP4:-0.511286027919;CEBPA,B_DDIT3:-0.521092737271;FOXD3:-0.577759125777;SPIB:-0.590301819918;UFEwm:-0.606153948448;NFE2L2:-0.618826125846;NFE2:-0.648360225642;NKX3-1:-0.651458935667;TEAD1:-0.6582657243;SPI1:-0.677010496589;BACH2:-0.67876172525;MTE{core}:-0.686190252323;REST:-0.697045677559;EBF1:-0.702839472783;FOXO1,3,4:-0.733758792535;ZNF384:-0.750141047978;JUN:-0.794941540529;TLX1..3_NFIC{dimer}:-0.839500441447;GCM1,2:-0.84570382142;NR3C1:-0.876156120504;NKX2-2,8:-0.892557325888;SMAD1..7,9:-0.937885039573;NFATC1..3:-0.966986640434;TBP:-0.978430767268;XCPE1{core}:-0.99620127631;MAFB:-0.99785527233;IRF1,2:-1.00734321065;FOXL1:-1.0127587303;ETS1,2:-1.01903136134;ZNF238:-1.05885099662;MTF1:-1.06546871332;ALX4:-1.06795764866;GZF1:-1.07284555336;MAZ:-1.08865474516;RXR{A,B,G}:-1.09698949431;HSF1,2:-1.11850391887;TP53:-1.15754937655;ZNF148:-1.18982100179;NR1H4:-1.34380987574;ESR1:-1.34756386002;TBX4,5:-1.46169677784;GLI1..3:-1.51703278451;NFE2L1:-1.5783418277;SRF:-1.58839028171;RXRA_VDR{dimer}:-1.60277761184;STAT2,4,6:-1.62781881598;SPZ1:-1.79771536599;HMX1:-1.9341548219;EP300:-2.12562833946;TFCP2:-2.13000104565;ZNF423:-2.14639859329 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10420-106C6;search_select_hide=table117:FF:10420-106C6 | |||
}} | }} | ||
Latest revision as of 14:00, 3 June 2020
| Name: | colon carcinoma cell line:COLO-320 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10737 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10737
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10737
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.705 |
| 10 | 10 | 0.751 |
| 100 | 100 | 0.871 |
| 101 | 101 | 0.733 |
| 102 | 102 | 0.694 |
| 103 | 103 | 0.358 |
| 104 | 104 | 0.616 |
| 105 | 105 | 0.845 |
| 106 | 106 | 2.29208e-5 |
| 107 | 107 | 0.0147 |
| 108 | 108 | 0.669 |
| 109 | 109 | 0.172 |
| 11 | 11 | 0.159 |
| 110 | 110 | 0.552 |
| 111 | 111 | 0.39 |
| 112 | 112 | 0.0544 |
| 113 | 113 | 0.18 |
| 114 | 114 | 0.0914 |
| 115 | 115 | 0.246 |
| 116 | 116 | 0.508 |
| 117 | 117 | 0.839 |
| 118 | 118 | 0.764 |
| 119 | 119 | 0.157 |
| 12 | 12 | 0.53 |
| 120 | 120 | 0.571 |
| 121 | 121 | 0.764 |
| 122 | 122 | 0.527 |
| 123 | 123 | 0.807 |
| 124 | 124 | 0.909 |
| 125 | 125 | 0.899 |
| 126 | 126 | 0.946 |
| 127 | 127 | 0.652 |
| 128 | 128 | 0.0252 |
| 129 | 129 | 0.666 |
| 13 | 13 | 0.904 |
| 130 | 130 | 0.708 |
| 131 | 131 | 0.0226 |
| 132 | 132 | 0.718 |
| 133 | 133 | 0.752 |
| 134 | 134 | 0.855 |
| 135 | 135 | 0.0125 |
| 136 | 136 | 0.885 |
| 137 | 137 | 0.223 |
| 138 | 138 | 0.165 |
| 139 | 139 | 0.0886 |
| 14 | 14 | 0.4 |
| 140 | 140 | 0.721 |
| 141 | 141 | 0.215 |
| 142 | 142 | 0.41 |
| 143 | 143 | 0.063 |
| 144 | 144 | 0.831 |
| 145 | 145 | 0.189 |
| 146 | 146 | 0.922 |
| 147 | 147 | 0.535 |
| 148 | 148 | 0.074 |
| 149 | 149 | 0.0476 |
| 15 | 15 | 0.66 |
| 150 | 150 | 0.295 |
| 151 | 151 | 0.186 |
| 152 | 152 | 0.00952 |
| 153 | 153 | 0.535 |
| 154 | 154 | 0.972 |
| 155 | 155 | 0.947 |
| 156 | 156 | 0.973 |
| 157 | 157 | 0.444 |
| 158 | 158 | 0.892 |
| 159 | 159 | 0.777 |
| 16 | 16 | 0.289 |
| 160 | 160 | 0.568 |
| 161 | 161 | 0.744 |
| 162 | 162 | 0.517 |
| 163 | 163 | 0.71 |
| 164 | 164 | 0.946 |
| 165 | 165 | 0.216 |
| 166 | 166 | 0.667 |
| 167 | 167 | 0.159 |
| 168 | 168 | 0.27 |
| 169 | 169 | 0.0217 |
| 17 | 17 | 0.15 |
| 18 | 18 | 0.287 |
| 19 | 19 | 0.115 |
| 2 | 2 | 0.202 |
| 20 | 20 | 0.345 |
| 21 | 21 | 0.414 |
| 22 | 22 | 0.153 |
| 23 | 23 | 0.00381 |
| 24 | 24 | 0.756 |
| 25 | 25 | 0.587 |
| 26 | 26 | 0.295 |
| 27 | 27 | 0.113 |
| 28 | 28 | 0.949 |
| 29 | 29 | 0.99 |
| 3 | 3 | 0.312 |
| 30 | 30 | 0.277 |
| 31 | 31 | 0.495 |
| 32 | 32 | 0.0043 |
| 33 | 33 | 0.812 |
| 34 | 34 | 0.214 |
| 35 | 35 | 0.793 |
| 36 | 36 | 0.511 |
| 37 | 37 | 0.0561 |
| 38 | 38 | 0.57 |
| 39 | 39 | 0.224 |
| 4 | 4 | 0.511 |
| 40 | 40 | 0.718 |
| 41 | 41 | 0.351 |
| 42 | 42 | 0.877 |
| 43 | 43 | 0.0977 |
| 44 | 44 | 0.106 |
| 45 | 45 | 0.322 |
| 46 | 46 | 0.184 |
| 47 | 47 | 0.831 |
| 48 | 48 | 0.457 |
| 49 | 49 | 0.263 |
| 5 | 5 | 0.23 |
| 50 | 50 | 0.546 |
| 51 | 51 | 0.769 |
| 52 | 52 | 0.115 |
| 53 | 53 | 0.523 |
| 54 | 54 | 0.421 |
| 55 | 55 | 0.0282 |
| 56 | 56 | 0.378 |
| 57 | 57 | 0.729 |
| 58 | 58 | 0.355 |
| 59 | 59 | 0.0142 |
| 6 | 6 | 0.43 |
| 60 | 60 | 0.0146 |
| 61 | 61 | 0.937 |
| 62 | 62 | 0.221 |
| 63 | 63 | 0.113 |
| 64 | 64 | 0.814 |
| 65 | 65 | 0.0299 |
| 66 | 66 | 0.04 |
| 67 | 67 | 0.861 |
| 68 | 68 | 0.933 |
| 69 | 69 | 0.157 |
| 7 | 7 | 0.999 |
| 70 | 70 | 0.0261 |
| 71 | 71 | 0.319 |
| 72 | 72 | 0.204 |
| 73 | 73 | 0.0163 |
| 74 | 74 | 0.672 |
| 75 | 75 | 0.837 |
| 76 | 76 | 0.445 |
| 77 | 77 | 0.0577 |
| 78 | 78 | 0.966 |
| 79 | 79 | 0.0265 |
| 8 | 8 | 0.325 |
| 80 | 80 | 0.364 |
| 81 | 81 | 0.456 |
| 82 | 82 | 0.0229 |
| 83 | 83 | 0.384 |
| 84 | 84 | 0.258 |
| 85 | 85 | 0.00888 |
| 86 | 86 | 0.602 |
| 87 | 87 | 0.642 |
| 88 | 88 | 0.859 |
| 89 | 89 | 0.0818 |
| 9 | 9 | 0.109 |
| 90 | 90 | 0.288 |
| 91 | 91 | 0.0217 |
| 92 | 92 | 0.181 |
| 93 | 93 | 0.163 |
| 94 | 94 | 0.0309 |
| 95 | 95 | 0.189 |
| 96 | 96 | 0.25 |
| 97 | 97 | 0.817 |
| 98 | 98 | 0.635 |
| 99 | 99 | 0.563 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10737
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102047 Colo-320 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002253 (epithelial cell of large intestine)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001155 (colon)
0001052 (rectum)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101913 (colonic adenocarcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100797 (colonic cancer cell line)
0101532 (rectal cancer cell line sample)
0101914 (colorectal adenocarcinoma cell line sample)
0101616 (colorectal cancer cell line sample)
0102047 (Colo-320 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)
