FFCP PHASE1:Hg19::chr17:74540323..74540336,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=768206 | |EntrezGene=768206 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32528 | |HGNC=32528 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=438bp_to_uc002jrz.1_5end | |association_with_transcript=438bp_to_uc002jrz.1_5end | ||
|cluster_id=chr17:74540323..74540336,+ | |||
|coexpression_cluster_id=C3681 | |coexpression_cluster_id=C3681 | ||
|description=CAGE_peak_6_at_PRCD_5end | |description=CAGE_peak_6_at_PRCD_5end | ||
|id=chr17:74540323..74540336,+ | |id=chr17:74540323..74540336,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000333;2.72e-40;5!CL:0002321;5.76e-14;15 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.87e-23;1!UBERON:0006222;4.10e-23;1!UBERON:0006601;1.91e-09;82!UBERON:0003056;1.00e-08;3 | |||
|ontology_enrichment_disease=DOID:171!1.24e-10!10;DOID:169!8.46e-09!6 | |ontology_enrichment_disease=DOID:171!1.24e-10!10;DOID:169!8.46e-09!6 | ||
|ontology_enrichment_disease_v019=DOID:169;9.93e-34;6!DOID:171;1.42e-20;10!DOID:3095;1.88e-16;22!DOID:2994;1.88e-16;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,9.39e-34,6;DOID:171,1.37e-20,10;DOID:3095,1.70e-16,22;DOID:2994,1.70e-16,22 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000013;2.72e-40;5!UBERON:0002410;2.72e-40;5!UBERON:0000010;1.47e-39;8!UBERON:0000941;1.87e-23;1!UBERON:0001785;1.87e-23;1!UBERON:0002464;1.87e-23;1!UBERON:0004904;1.87e-23;1!UBERON:0001021;1.87e-23;1!UBERON:0001894;1.31e-13;7!UBERON:0001897;1.65e-12;2!UBERON:0010225;1.65e-12;2!UBERON:0003714;1.96e-12;2!UBERON:0005162;1.96e-12;2!UBERON:0000122;1.96e-12;2!UBERON:0001896;1.30e-08;3!UBERON:0005290;1.30e-08;3!UBERON:0004732;9.68e-08;13!UBERON:0002784;6.87e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.55e-40,5;UBERON:0002410,2.55e-40,5;UBERON:0000010,1.33e-39,8;UBERON:0000941,1.67e-23,1;UBERON:0001785,1.67e-23,1;UBERON:0002464,1.67e-23,1;UBERON:0004904,1.67e-23,1;UBERON:0001021,1.67e-23,1;UBERON:0003902,1.67e-23,1;UBERON:0005425,1.67e-23,1;UBERON:0001016,3.95e-15,89;UBERON:0001894,1.40e-13,7;UBERON:0006222,1.40e-13,7;UBERON:0001897,1.65e-12,2;UBERON:0010225,1.65e-12,2;UBERON:0003714,1.85e-12,2;UBERON:0005162,1.85e-12,2;UBERON:0000122,1.85e-12,2;UBERON:0001896,1.51e-08,3;UBERON:0005290,1.51e-08,3;UBERON:0010096,1.51e-08,3;UBERON:0004121,7.05e-08,171;UBERON:0000924,7.05e-08,171;UBERON:0006601,7.05e-08,171;UBERON:0004732,1.02e-07,13;UBERON:0002784,6.87e-07,4;UBERON:0000073,7.16e-07,53;UBERON:0002616,7.16e-07,53;UBERON:0001781,7.27e-07,4;UBERON:0003075,8.95e-07,82;UBERON:0007284,8.95e-07,82 | |||
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| ||
|short_description=p6@PRCD | |short_description=p6@PRCD | ||
}} | }} |
Latest revision as of 15:43, 17 September 2015
Short description: | p6@PRCD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PRCD_5end |
Coexpression cluster: | C3681_neuroblastoma_optic_teratocarcinoma_substantia_diencephalon_corpus_globus |
Association with transcript: | 438bp_to_uc002jrz.1_5end |
EntrezGene: | PRCD |
HGNC: | 32528 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.55e-40 | 5 |
autonomic nervous system | 2.55e-40 | 5 |
peripheral nervous system | 1.33e-39 | 8 |
cranial nerve II | 1.67e-23 | 1 |
cranial nerve | 1.67e-23 | 1 |
nerve trunk | 1.67e-23 | 1 |
nerve connecting eye with brain | 1.67e-23 | 1 |
nerve | 1.67e-23 | 1 |
retinal neural layer | 1.67e-23 | 1 |
presumptive neural retina | 1.67e-23 | 1 |
nervous system | 3.95e-15 | 89 |
diencephalon | 1.40e-13 | 7 |
future diencephalon | 1.40e-13 | 7 |
dorsal plus ventral thalamus | 1.65e-12 | 2 |
thalamic complex | 1.65e-12 | 2 |
neural tissue | 1.85e-12 | 2 |
multi cell component structure | 1.85e-12 | 2 |
neuron projection bundle | 1.85e-12 | 2 |
medulla oblongata | 1.51e-08 | 3 |
myelencephalon | 1.51e-08 | 3 |
future myelencephalon | 1.51e-08 | 3 |
ectoderm-derived structure | 7.05e-08 | 171 |
ectoderm | 7.05e-08 | 171 |
presumptive ectoderm | 7.05e-08 | 171 |
segmental subdivision of nervous system | 1.02e-07 | 13 |
regional part of diencephalon | 6.87e-07 | 4 |
regional part of nervous system | 7.16e-07 | 53 |
regional part of brain | 7.16e-07 | 53 |
layer of retina | 7.27e-07 | 4 |
neural plate | 8.95e-07 | 82 |
presumptive neural plate | 8.95e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 9.39e-34 | 6 |
neuroectodermal tumor | 1.37e-20 | 10 |
germ cell and embryonal cancer | 1.70e-16 | 22 |
germ cell cancer | 1.70e-16 | 22 |