FF:11265-116G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005300 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005300 | ||
|accession_numbers=CAGE;DRX008226;DRR009098;DRZ000523;DRZ001908;DRZ011873;DRZ013258 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037071;DRR041437;DRZ007079 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0010523,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001915,UBERON:0004535,UBERON:0001982,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002144 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000050 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!2.52!326.69!SOX17;;chr20:62680984..62680999,-!p1@SOX18!2.51!425.39!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.31!201.41!SOX7;;chr21:39870339..39870443,-!p1@ERG!2.05!111.18!ERG;;chr17:6926362..6926377,+!p1@BCL6B!1.89!76.94!BCL6B;;chr1:214161272..214161322,+!p1@PROX1!1.84!95.07!PROX1;;chr22:19748231..19748317,+!p1@TBX1!1.81!64.05!TBX1;;chr2:177053386..177053402,+!p1@HOXD1!1.61!39.88!HOXD1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.59!37.87!ZBED1;;chr12:96588368..96588394,+!p3@ELK3!1.48!76.54!ELK3;;chr1:6479968..6479986,-!p1@HES2!1.43!26.18!HES2;;chr18:53068911..53068935,-!p4@TCF4!1.39!26.59!TCF4;;chr4:146404119..146404158,+!p9@SMAD1!1.33!20.54!SMAD1;;chr3:12330560..12330579,+!p1@PPARG!1.24!18.93!PPARG;;chr4:146403912..146403972,+!p5@SMAD1!1.20!18.93!SMAD1;;chr4:146402843..146402864,+!p3@SMAD1!1.17!27.39!SMAD1;;chrX:103499602..103499617,-!p1@ESX1!1.17!13.70!ESX1;;chr1:47695003..47695042,-!p2@TAL1!1.17!13.70!TAL1;;chr10:94449703..94449718,+!p1@HHEX!1.16!51.56!HHEX;;chr19:46801639..46801699,+!p1@HIF3A!1.13!12.49!HIF3A;;chr19:13213399..13213414,-!p6@LYL1!1.13!12.49!LYL1;;chr22:41697497..41697515,+!p2@ZC3H7B!1.12!33.43!ZC3H7B;;chr17:46688334..46688385,-!p1@HOXB7!1.10!16.92!HOXB7;;chr17:46682321..46682362,-!p1@HOXB6!1.09!11.28!HOXB6;;chr11:65430554..65430579,-!p3@RELA!1.07!27.39!RELA;;chr10:31288398..31288455,-!p2@ZNF438!1.04!11.68!ZNF438;;chr6:21597765..21597779,+!p2@SOX4!1.01!76.94!SOX4;;chr4:146404160..146404186,+!p13@SMAD1!1.01!9.27!SMAD1;;chr3:128206762..128206781,-!p2@GATA2!1.00!56.80!GATA2;;chr18:22932080..22932170,-!p1@ZNF521!0.99!37.87!ZNF521;;chr18:52989565..52989623,-!p9@TCF4!0.99!11.28!TCF4;;chr8:55370720..55370733,+!p2@SOX17!0.99!8.86!SOX17;;chr9:16705069..16705086,-!p3@BNC2!0.99!8.86!BNC2;;chr19:13213511..13213545,-!p2@LYL1!0.98!9.27!LYL1;;chr17:46690839..46690884,-!p1@HOXB8!0.98!8.46!HOXB8;;chr7:27196267..27196311,-!p1@HOXA7!0.98!8.46!HOXA7;;chr4:146401920..146401926,+!p14@SMAD1!0.94!7.65!SMAD1;;chr7:26191809..26191890,+!p1@NFE2L3!0.89!35.05!NFE2L3;;chr17:1959369..1959388,+!p2@HIC1!0.89!18.53!HIC1;;chr6:21593973..21593988,+!p1@SOX4!0.87!246.93!SOX4;;chr20:50721803..50721857,-!p2@ZFP64!0.86!10.07!ZFP64;;chr6:34204921..34204939,+!p3@HMGA1!0.85!195.37!HMGA1;;chr4:146436110..146436135,+!p6@SMAD1!0.85!8.86!SMAD1;;chr2:176987441..176987454,+!p1@HOXD9!0.85!6.04!HOXD9;;chr22:38597987..38598021,+!p2@MAFF!0.84!39.07!MAFF;;chr6:85474299..85474324,-!p1@TBX18!0.84!10.88!TBX18;;chr3:12329397..12329433,+!p2@PPARG!0.83!13.70!PPARG;;chr15:96876966..96877017,+!p12@NR2F2!0.83!8.46!NR2F2;;chr19:13213662..13213686,-!p1@LYL1!0.82!8.46!LYL1;;chr20:50159198..50159299,-!p1@NFATC2!0.82!8.46!NFATC2;;chr20:62679771..62679782,-!p4@SOX18!0.82!5.64!SOX18;;chr20:42543441..42543497,+!p1@TOX2!0.81!26.59!TOX2;;chr22:38598086..38598105,+!p1@MAFF!0.79!60.02!MAFF;;chr19:49865646..49865718,-!p1@TEAD2!0.79!47.94!TEAD2;;chr15:96874927..96874938,+!p8@NR2F2!0.79!11.68!NR2F2;;chr18:53177984..53178004,-!p17@TCF4!0.79!5.24!TCF4;;chr1:47696918..47696935,-!p6@TAL1!0.79!5.24!TAL1;;chr2:176994408..176994492,+!p1@HOXD8!0.79!5.24!HOXD8;;chr2:46524537..46524553,+!p1@EPAS1!0.78!542.21!EPAS1;;chr19:57106647..57106686,+!p1@ZNF71!0.78!36.66!ZNF71;;chr12:80084137..80084165,-!p10@PAWR!0.77!6.45!PAWR;;chr10:31288370..31288393,-!p3@ZNF438!0.77!4.83!ZNF438;;chr2:46612891..46612907,+!p10@EPAS1!0.77!4.83!EPAS1;;chr6:44233252..44233296,-!p1@NFKBIE!0.74!49.55!NFKBIE;;chr20:42543506..42543549,+!p2@TOX2!0.74!11.68!TOX2;;chr15:83953397..83953425,-!p1@BNC1!0.74!5.24!BNC1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.73!352.88!TAX1BP3;;chr11:128563948..128564003,+!p1@FLI1!0.73!59.62!FLI1;;chr9:35732647..35732678,+!p2@CREB3!0.73!26.99!CREB3;;chr2:176987463..176987479,+!p2@HOXD9!0.73!4.43!HOXD9;;chr18:53068982..53068993,-!p20@TCF4!0.73!4.43!TCF4;;chr17:1958388..1958404,+!p1@HIC1!0.72!30.21!HIC1;;chr20:6748325..6748352,+!p1@BMP2!0.72!6.45!BMP2;;chr22:41697484..41697496,+!p3@ZC3H7B!0.72!5.64!ZC3H7B;;chr4:57522166..57522260,-!p2@HOPX!0.71!4.83!HOPX;;chr15:96874244..96874259,+!p5@NR2F2!0.69!10.47!NR2F2;;chr4:2263809..2263854,-!p1@MXD4!0.68!167.98!MXD4;;chr15:96874012..96874042,+!p2@NR2F2!0.68!38.67!NR2F2;;chr4:2263861..2263883,-!p2@MXD4!0.68!25.78!MXD4;;chr6:85473156..85473210,-!p2@TBX18!0.68!4.83!TBX18;;chr1:23885981..23886002,-!p1@ID3!0.67!752.49!ID3;;chr11:47236584..47236679,+!p1@DDB2!0.67!45.92!DDB2;;chr10:94449675..94449694,+!p2@HHEX!0.67!10.88!HHEX;;chr8:106330696..106330719,+!p2@ZFPM2!0.67!4.83!ZFPM2;;chr11:65430535..65430549,-!p4@RELA!0.67!4.43!RELA;;chr1:47697539..47697573,-!p3@TAL1!0.67!3.63!TAL1;;chr20:62680671..62680679,-!p2@SOX18!0.67!3.63!SOX18;;chr2:176994919..176994931,+!p2@HOXD8!0.67!3.63!HOXD8;;chr10:104155480..104155534,+!p2@NFKB2!0.66!26.59!NFKB2;;chr2:46524897..46524911,+!p2@EPAS1!0.66!11.28!EPAS1;;chr17:4890695..4890773,-!p2@CAMTA2!0.65!12.49!CAMTA2;;chr4:4861385..4861398,+!p1@MSX1!0.65!11.68!MSX1;;chr8:80679993..80680011,-!p1@HEY1!0.64!5.24!HEY1;;chr11:62368696..62368759,-!p4@MTA2!0.63!23.77!MTA2;;chr2:85360499..85360598,+!p1@TCF7L1!0.63!21.35!TCF7L1;;chr5:88179195..88179224,-!p3@MEF2C!0.63!5.64!MEF2C;;chr6:28321971..28321995,-!p1@ZNF323!0.63!3.22!ZNF323;;chr7:27153454..27153469,-!p2@HOXA3!0.63!3.22!HOXA3;;chr7:27205106..27205134,-!p2@HOXA9!0.63!3.22!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!0.63!3.22!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!0.63!3.22!HOXA11;;chr8:10588174..10588200,-!p3@SOX7!0.63!3.22!SOX7;;chr22:19746969..19746987,+!p2@TBX1!0.63!3.22!TBX1;;chr4:146402827..146402839,+!p10@SMAD1!0.63!3.22!SMAD1;;chr1:200008734..200008765,+!p2@NR5A2!0.63!3.22!NR5A2;;chr11:128457446..128457461,-!p4@ETS1!0.63!3.22!ETS1;;chr18:52988952..52988965,-!p23@TCF4!0.63!3.22!TCF4;;chr18:52989031..52989079,-!p2@TCF4!0.62!8.46!TCF4;;chr18:52989001..52989030,-!p10@TCF4!0.62!3.63!TCF4;;chr10:114710244..114710257,+!p3@TCF7L2!0.61!9.67!TCF7L2;;chr19:53496768..53496799,-!p1@ZNF702P!0.61!5.24!ZNF702P;;chr19:49864746..49864780,-!p2@TEAD2!0.61!4.43!TEAD2;;chr19:45504688..45504782,+!p1@RELB!0.60!21.35!RELB;;chr15:96874145..96874166,+!p7@NR2F2!0.60!6.45!NR2F2;;chr18:53257001..53257015,-!p5@TCF4!0.60!5.64!TCF4;;chr3:168865194..168865245,-!p3@MECOM!0.60!4.03!MECOM;;chr3:169381420..169381535,-!p1@MECOM!0.60!3.63!MECOM;;chr12:80084167..80084197,-!p5@PAWR!0.59!7.65!PAWR;;chr15:90544532..90544563,+!p1@ZNF710!0.59!6.45!ZNF710;;chr16:8962544..8962584,-!p2@CARHSP1!0.58!7.25!CARHSP1;;chr15:67459116..67459123,+!p23@SMAD3!0.58!2.82!SMAD3;;chr12:54393880..54393962,+!p1@HOXC9!0.58!2.82!HOXC9;;chr7:27169801..27169844,-!p2@HOXA4!0.58!2.82!HOXA4;;chrX:103499660..103499666,-!p2@ESX1!0.58!2.82!ESX1;;chr2:177001290..177001315,+!p1@HOXD3!0.58!2.82!HOXD3;;chr16:67881588..67881612,-!p2@CENPT!0.57!4.03!CENPT;;chr17:40440225..40440268,+!p3@STAT5A!0.57!3.63!STAT5A;;chr16:8962202..8962222,-!p3@CARHSP1!0.56!5.24!CARHSP1;;chr15:96873921..96873946,+!p1@NR2F2!0.55!90.23!NR2F2;;chr3:178789522..178789564,-!p2@ZMAT3!0.54!22.56!ZMAT3;;chr19:1652555..1652568,-!p2@TCF3!0.54!12.49!TCF3;;chr9:14083467..14083483,-!p4@NFIB!0.54!7.25!NFIB;;chr1:23696448..23696453,-!p5@ZNF436!0.54!3.22!ZNF436;;chr18:3452133..3452150,+!p19@TGIF1!0.54!2.82!TGIF1;;chr11:47236489..47236567,+!p2@DDB2!0.53!42.30!DDB2;;chr3:168864315..168864339,-!p2@MECOM!0.53!4.43!MECOM;;chr3:101546827..101546847,+!p2@NFKBIZ!0.53!3.63!NFKBIZ;;chr22:19747040..19747054,+!p3@TBX1!0.53!2.42!TBX1;;chr17:46691732..46691766,-!p4@HOXB8!0.53!2.42!HOXB8;;chr18:52989447..52989460,-!p50@TCF4!0.53!2.42!TCF4;;chr1:214161328..214161348,+!p2@PROX1!0.53!2.42!PROX1;;chr6:34204672..34204692,+!p1@HMGA1!0.52!339.18!HMGA1;;chr15:96873984..96873999,+!p3@NR2F2!0.52!21.75!NR2F2;;chr4:146402997..146403020,+!p1@SMAD1!0.52!20.95!SMAD1;;chr18:77160282..77160343,+!p2@NFATC1!0.52!18.13!NFATC1;;chr14:65569101..65569119,-!p3@MAX!0.52!8.86!MAX;;chr5:92918919..92918942,+!p1@NR2F1!0.51!12.49!NR2F1;;chr4:146402966..146402985,+!p2@SMAD1!0.51!10.47!SMAD1;;chr13:37494365..37494381,-!p1@SMAD9!0.51!4.43!SMAD9;;chr10:3819310..3819325,-!p5@KLF6!0.51!3.22!KLF6;;chr6:21597283..21597312,+!p7@SOX4!0.51!3.22!SOX4;;chr14:75988771..75988826,+!p1@BATF!0.51!3.22!BATF;;chr2:46612334..46612349,+!p6@EPAS1!0.51!3.22!EPAS1;;chr17:46126136..46126152,+!p1@NFE2L1!0.50!149.05!NFE2L1;;chr19:56154958..56155027,+!p1@ZNF581!0.50!95.87!ZNF581;;chr19:45908292..45908374,-!p1@PPP1R13L!0.50!24.98!PPP1R13L;;chr6:130339710..130339745,+!p1@L3MBTL3!0.50!22.56!L3MBTL3;;chr10:35484804..35484902,+!p2@CREM!0.50!10.47!CREM;;chr19:42636586..42636607,-!p1@POU2F2!0.50!7.25!POU2F2;;chr8:106330656..106330684,+!p1@ZFPM2!0.50!6.85!ZFPM2;;chr3:52001396..52001425,-!p4@PCBP4!0.50!4.43!PCBP4;;chr9:14082760..14082775,-!p6@NFIB!0.50!4.03!NFIB;;chr12:125002739..125002756,-!p6@NCOR2!0.50!3.63!NCOR2;;chr8:73921136..73921151,+!p2@TERF1!0.50!3.63!TERF1;;chr4:146402795..146402816,+!p7@SMAD1!0.50!3.22!SMAD1;;chr1:204042723..204042784,+!p3@SOX13!0.49!4.03!SOX13;;chr6:21594252..21594285,+!p11@SOX4!0.49!2.42!SOX4;;chr11:65430586..65430593,-!p5@RELA!0.49!2.42!RELA;;chr22:41697520..41697613,+!p1@ZC3H7B!0.48!156.70!ZC3H7B;;chr7:139762641..139762768,-!p1@PARP12!0.48!36.66!PARP12;;chr13:41240717..41240735,-!p2@FOXO1!0.48!18.13!FOXO1;;chr15:77713299..77713316,+!p3@HMG20A!0.48!3.63!HMG20A;;chr15:96877425..96877441,+!p32@NR2F2!0.48!2.01!NR2F2;;chr16:30406423..30406447,+!p4@ZNF48!0.48!2.01!ZNF48;;chr16:85932760..85932775,+!p1@IRF8!0.48!2.01!IRF8;;chr17:6926381..6926392,+!p2@BCL6B!0.48!2.01!BCL6B;;chr18:53068940..53068951,-!p21@TCF4!0.48!2.01!TCF4;;chr10:31288329..31288353,-!p7@ZNF438!0.48!2.01!ZNF438;;chr5:88119580..88119602,-!p17@MEF2C!0.48!2.01!MEF2C;;chr22:19748407..19748412,+!p5@TBX1!0.48!2.01!TBX1;;chr3:114343039..114343085,-!p8@ZBTB20!0.48!2.01!ZBTB20;;chr3:141087454..141087465,+!p19@ZBTB38!0.48!2.01!ZBTB38;;chr4:57522598..57522664,-!p3@HOPX!0.48!2.01!HOPX;;chr19:9732460..9732472,-!p2@ZNF561!0.48!2.01!ZNF561;;chr1:47695156..47695179,-!p10@TAL1!0.48!2.01!TAL1;;chr20:62670299..62670342,-!p8@ZNF512B!0.48!2.01!ZNF512B;;chr17:3571887..3571918,-!p2@TAX1BP3!0.47!29.41!TAX1BP3;;chr19:1863591..1863611,-!p2@KLF16!0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| 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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002144;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0002546,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor1.CNhs11925.11265-116G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor1.CNhs11925.11265-116G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor1.CNhs11925.11265-116G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor1.CNhs11925.11265-116G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor1.CNhs11925.11265-116G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11265-116G5 | |id=FF:11265-116G5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000050 | ||
|is_obsolete= | |||
|library_id=CNhs11925 | |||
|library_id_phase_based=2:CNhs11925 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11265 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.TGACCA.11265 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11265 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.TGACCA.11265 | |||
|name=Endothelial Cells - Microvascular, donor1 | |name=Endothelial Cells - Microvascular, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11925,LSID842,release011,COMPLETED | |profile_hcage=CNhs11925,LSID842,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA100-R10a | |rna_catalog_number=CA100-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116G5 | |rna_tube_id=116G5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.TGACCA | |||
|sample_age=53 | |sample_age=53 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.01788252755753e-212!GO:0005737;cytoplasm;5.25014500308799e-196!GO:0043226;organelle;2.71794295950332e-163!GO:0043229;intracellular organelle;7.56777704814549e-163!GO:0043231;intracellular membrane-bound organelle;3.51701172971144e-158!GO:0043227;membrane-bound organelle;4.7113139558619e-158!GO:0044444;cytoplasmic part;1.71567155573853e-142!GO:0044422;organelle part;2.0089732788486e-129!GO:0044446;intracellular organelle part;6.40141384573797e-128!GO:0032991;macromolecular complex;3.06133081927275e-88!GO:0005515;protein binding;2.09287758304716e-84!GO:0030529;ribonucleoprotein complex;3.27340068417741e-78!GO:0044238;primary metabolic process;3.77154782967064e-72!GO:0044237;cellular metabolic process;5.65682592594188e-71!GO:0005739;mitochondrion;4.05093381096821e-68!GO:0043170;macromolecule metabolic process;3.88130563255632e-63!GO:0043233;organelle lumen;1.14040002727205e-59!GO:0031974;membrane-enclosed lumen;1.14040002727205e-59!GO:0003723;RNA binding;2.6849816698859e-58!GO:0044428;nuclear part;1.55521712987332e-55!GO:0019538;protein metabolic process;8.01272129004004e-54!GO:0031090;organelle membrane;1.18393702418893e-53!GO:0005840;ribosome;4.91146266112439e-50!GO:0005634;nucleus;1.52782147697937e-48!GO:0006412;translation;6.63622156138681e-47!GO:0044260;cellular macromolecule metabolic process;9.83517363749072e-47!GO:0044267;cellular protein metabolic process;1.39598945912345e-46!GO:0044429;mitochondrial part;5.03541365942331e-46!GO:0003735;structural constituent of ribosome;3.94395134507536e-45!GO:0043234;protein complex;4.21456828265108e-44!GO:0016043;cellular component organization and biogenesis;4.13205110943228e-43!GO:0031967;organelle envelope;9.71022389488753e-42!GO:0031975;envelope;2.37592230766114e-41!GO:0015031;protein transport;4.17161546971401e-39!GO:0005829;cytosol;5.41031014708424e-39!GO:0009058;biosynthetic process;1.58670726173e-38!GO:0033279;ribosomal subunit;1.62948812186482e-38!GO:0033036;macromolecule localization;4.12117287834189e-38!GO:0044249;cellular biosynthetic process;1.91891363407096e-36!GO:0045184;establishment of protein localization;3.57900739826954e-36!GO:0006396;RNA processing;6.15686357506351e-36!GO:0008104;protein localization;1.61270853942695e-35!GO:0009059;macromolecule biosynthetic process;1.62995169449267e-35!GO:0031981;nuclear lumen;4.13325396143264e-34!GO:0005740;mitochondrial envelope;1.18768994381079e-32!GO:0046907;intracellular transport;5.28729831900773e-32!GO:0031966;mitochondrial membrane;8.15845369049273e-31!GO:0043283;biopolymer metabolic process;1.4166565522198e-30!GO:0016071;mRNA metabolic process;1.24811559981349e-29!GO:0006996;organelle organization and biogenesis;3.48517027100474e-29!GO:0065003;macromolecular complex assembly;5.16925156263199e-29!GO:0043228;non-membrane-bound organelle;7.15589870322067e-29!GO:0043232;intracellular non-membrane-bound organelle;7.15589870322067e-29!GO:0008380;RNA splicing;1.13315305873522e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.36889164884359e-28!GO:0019866;organelle inner membrane;6.38065518749942e-28!GO:0006886;intracellular protein transport;1.73029407873067e-26!GO:0006397;mRNA processing;1.87259256542215e-26!GO:0005743;mitochondrial inner membrane;2.54929552908478e-26!GO:0022607;cellular component assembly;5.71025470232401e-26!GO:0010467;gene expression;4.10327914712954e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.76791134022e-23!GO:0000166;nucleotide binding;1.64267217210699e-22!GO:0044445;cytosolic part;2.93305531700314e-22!GO:0006119;oxidative phosphorylation;3.76064361084618e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.23581081436477e-22!GO:0005681;spliceosome;1.80000898949574e-21!GO:0051649;establishment of cellular localization;2.32228683307316e-21!GO:0051641;cellular localization;3.33783707504313e-21!GO:0012505;endomembrane system;3.62962146318014e-21!GO:0005654;nucleoplasm;7.28160784664232e-21!GO:0015934;large ribosomal subunit;9.63166749953998e-21!GO:0044455;mitochondrial membrane part;1.11115694344561e-20!GO:0005783;endoplasmic reticulum;4.71995777945713e-20!GO:0015935;small ribosomal subunit;9.69936221515031e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.06538332333075e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.20150308148904e-18!GO:0016462;pyrophosphatase activity;1.20150308148904e-18!GO:0006259;DNA metabolic process;2.83655624533431e-18!GO:0017111;nucleoside-triphosphatase activity;4.21158161068047e-18!GO:0007049;cell cycle;5.34007397201769e-18!GO:0044451;nucleoplasm part;1.67714443062604e-17!GO:0006457;protein folding;3.24973594505639e-17!GO:0044432;endoplasmic reticulum part;3.99199265026234e-17!GO:0031980;mitochondrial lumen;4.36491064403503e-17!GO:0005759;mitochondrial matrix;4.36491064403503e-17!GO:0005746;mitochondrial respiratory chain;7.86213343661297e-17!GO:0032553;ribonucleotide binding;9.27473520275113e-17!GO:0032555;purine ribonucleotide binding;9.27473520275113e-17!GO:0016874;ligase activity;1.24749150969136e-16!GO:0017076;purine nucleotide binding;1.30488740863551e-16!GO:0005794;Golgi apparatus;1.78301196154788e-16!GO:0006512;ubiquitin cycle;2.08061500343778e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.66501346537315e-16!GO:0051186;cofactor metabolic process;8.99952540257498e-16!GO:0048770;pigment granule;1.50406185289114e-15!GO:0042470;melanosome;1.50406185289114e-15!GO:0008134;transcription factor binding;1.68080011562883e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.78663256880929e-15!GO:0043412;biopolymer modification;3.6896363640364e-15!GO:0016192;vesicle-mediated transport;3.84895948072311e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.01056023862752e-15!GO:0022618;protein-RNA complex assembly;7.66656323794313e-15!GO:0050136;NADH dehydrogenase (quinone) activity;8.64117817018208e-15!GO:0003954;NADH dehydrogenase activity;8.64117817018208e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.64117817018208e-15!GO:0006464;protein modification process;2.60907276355486e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.37805469681254e-14!GO:0022402;cell cycle process;4.99140776184849e-14!GO:0012501;programmed cell death;5.36095905296103e-14!GO:0044265;cellular macromolecule catabolic process;5.47249176020514e-14!GO:0006915;apoptosis;6.3878608777448e-14!GO:0043285;biopolymer catabolic process;1.23838969402302e-13!GO:0005730;nucleolus;1.23838969402302e-13!GO:0005761;mitochondrial ribosome;1.23838969402302e-13!GO:0000313;organellar ribosome;1.23838969402302e-13!GO:0006605;protein targeting;1.67405298862361e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;2.05403016109354e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.37384599725377e-13!GO:0019941;modification-dependent protein catabolic process;3.03500066456895e-13!GO:0043632;modification-dependent macromolecule catabolic process;3.03500066456895e-13!GO:0044257;cellular protein catabolic process;3.80738711903177e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.52608960570615e-13!GO:0042773;ATP synthesis coupled electron transport;4.52608960570615e-13!GO:0008135;translation factor activity, nucleic acid binding;5.09122361894065e-13!GO:0006511;ubiquitin-dependent protein catabolic process;5.55645696556633e-13!GO:0009057;macromolecule catabolic process;6.25790966871079e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.87927812772402e-13!GO:0045271;respiratory chain complex I;7.87927812772402e-13!GO:0005747;mitochondrial respiratory chain complex I;7.87927812772402e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.67911716041542e-13!GO:0030163;protein catabolic process;1.05374277459045e-12!GO:0043687;post-translational protein modification;1.8873485496846e-12!GO:0005789;endoplasmic reticulum membrane;1.96513170036593e-12!GO:0032559;adenyl ribonucleotide binding;2.07138452960025e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.08018010813393e-12!GO:0005524;ATP binding;2.16710445131516e-12!GO:0030554;adenyl nucleotide binding;3.54803968222738e-12!GO:0008219;cell death;3.54803968222738e-12!GO:0016265;death;3.54803968222738e-12!GO:0000278;mitotic cell cycle;3.92670663877758e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;4.59188286764056e-12!GO:0000375;RNA splicing, via transesterification reactions;4.59188286764056e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.59188286764056e-12!GO:0044248;cellular catabolic process;5.14165094169375e-12!GO:0048193;Golgi vesicle transport;5.87205135606201e-12!GO:0051082;unfolded protein binding;6.09222451239767e-12!GO:0006732;coenzyme metabolic process;8.45888355827621e-12!GO:0009055;electron carrier activity;5.48073575008787e-11!GO:0051726;regulation of cell cycle;1.49613659606287e-10!GO:0003712;transcription cofactor activity;1.63027924716817e-10!GO:0000074;regulation of progression through cell cycle;1.63971744542673e-10!GO:0006163;purine nucleotide metabolic process;1.89738389661863e-10!GO:0009259;ribonucleotide metabolic process;2.05341039491243e-10!GO:0006461;protein complex assembly;2.16174482885924e-10!GO:0009150;purine ribonucleotide metabolic process;2.26256717692119e-10!GO:0005635;nuclear envelope;2.61917821999604e-10!GO:0008639;small protein conjugating enzyme activity;2.98035918058406e-10!GO:0004842;ubiquitin-protein ligase activity;5.00486310029374e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.3151717356271e-10!GO:0019787;small conjugating protein ligase activity;8.85419906787187e-10!GO:0006974;response to DNA damage stimulus;9.85898747000077e-10!GO:0005793;ER-Golgi intermediate compartment;1.07350827333135e-09!GO:0003743;translation initiation factor activity;1.27240722501686e-09!GO:0006413;translational initiation;1.46686884993924e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.69505305322998e-09!GO:0016604;nuclear body;1.85329230710618e-09!GO:0005773;vacuole;2.05541601303227e-09!GO:0008565;protein transporter activity;2.4005031063671e-09!GO:0006446;regulation of translational initiation;2.48633911021704e-09!GO:0006164;purine nucleotide biosynthetic process;2.51514288986674e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.58626906319433e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.58626906319433e-09!GO:0009141;nucleoside triphosphate metabolic process;2.68359056714968e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.98810331492849e-09!GO:0042623;ATPase activity, coupled;4.21821250032655e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.23813967469312e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.59891026320838e-09!GO:0048523;negative regulation of cellular process;4.98416256772566e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.94992977249529e-09!GO:0042254;ribosome biogenesis and assembly;6.22243424439913e-09!GO:0009260;ribonucleotide biosynthetic process;7.39795055556503e-09!GO:0042981;regulation of apoptosis;7.65790657117182e-09!GO:0003676;nucleic acid binding;7.66486253102089e-09!GO:0006913;nucleocytoplasmic transport;8.46133071802561e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.37751665954241e-09!GO:0043067;regulation of programmed cell death;9.46843545433039e-09!GO:0016887;ATPase activity;9.74968971715986e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.9785059095534e-09!GO:0007067;mitosis;1.13498858391295e-08!GO:0031988;membrane-bound vesicle;1.17793872314036e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.18281541597748e-08!GO:0005768;endosome;1.37345308897212e-08!GO:0000087;M phase of mitotic cell cycle;1.42385762591423e-08!GO:0031965;nuclear membrane;1.43631101797516e-08!GO:0016881;acid-amino acid ligase activity;1.7308143067336e-08!GO:0044453;nuclear membrane part;1.91540341533166e-08!GO:0051169;nuclear transport;1.91680744057971e-08!GO:0015986;ATP synthesis coupled proton transport;1.97601313271694e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.97601313271694e-08!GO:0003924;GTPase activity;2.07473691908105e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.31911619428638e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.31911619428638e-08!GO:0000323;lytic vacuole;2.38606043390845e-08!GO:0005764;lysosome;2.38606043390845e-08!GO:0046034;ATP metabolic process;2.41067785322398e-08!GO:0009060;aerobic respiration;2.74779160202471e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.56109795229451e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.56109795229451e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.74246061293899e-08!GO:0006916;anti-apoptosis;4.37655917294915e-08!GO:0006281;DNA repair;5.14388591942255e-08!GO:0051301;cell division;6.34883003165422e-08!GO:0051188;cofactor biosynthetic process;6.91074618646836e-08!GO:0006793;phosphorus metabolic process;7.11016351887903e-08!GO:0006796;phosphate metabolic process;7.11016351887903e-08!GO:0043069;negative regulation of programmed cell death;7.49817651032791e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;7.53405021484802e-08!GO:0009056;catabolic process;7.78459665225423e-08!GO:0043066;negative regulation of apoptosis;9.75887024438254e-08!GO:0051276;chromosome organization and biogenesis;1.02747520034042e-07!GO:0031252;leading edge;1.03824299662755e-07!GO:0048519;negative regulation of biological process;1.10248411175043e-07!GO:0050794;regulation of cellular process;1.30206847826082e-07!GO:0031982;vesicle;1.32345913544354e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.47954623144265e-07!GO:0005694;chromosome;1.6786249310565e-07!GO:0031410;cytoplasmic vesicle;1.79713684637822e-07!GO:0005525;GTP binding;1.87335093020549e-07!GO:0006323;DNA packaging;2.18856919655279e-07!GO:0019829;cation-transporting ATPase activity;2.23173332299007e-07!GO:0016607;nuclear speck;2.35361685090719e-07!GO:0016310;phosphorylation;2.39680253681384e-07!GO:0022403;cell cycle phase;2.52993728434902e-07!GO:0009719;response to endogenous stimulus;2.80348160826306e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.10095508885427e-07!GO:0051246;regulation of protein metabolic process;3.25725686048904e-07!GO:0006754;ATP biosynthetic process;3.29552329061305e-07!GO:0006753;nucleoside phosphate metabolic process;3.29552329061305e-07!GO:0016070;RNA metabolic process;3.42354713210488e-07!GO:0007243;protein kinase cascade;3.4375188404219e-07!GO:0045333;cellular respiration;3.49953448492244e-07!GO:0009117;nucleotide metabolic process;3.87377023050669e-07!GO:0006260;DNA replication;3.91656599195487e-07!GO:0015630;microtubule cytoskeleton;5.05402319634208e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.28890984854624e-07!GO:0017038;protein import;5.35463305996798e-07!GO:0044431;Golgi apparatus part;5.50697080240937e-07!GO:0006399;tRNA metabolic process;5.53018568989279e-07!GO:0007005;mitochondrion organization and biogenesis;6.03553055005917e-07!GO:0016491;oxidoreductase activity;6.87797821813187e-07!GO:0044427;chromosomal part;7.90531028731013e-07!GO:0006099;tricarboxylic acid cycle;1.02867907468441e-06!GO:0046356;acetyl-CoA catabolic process;1.02867907468441e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.03161541415646e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.20555839494211e-06!GO:0005770;late endosome;1.62794746038262e-06!GO:0005788;endoplasmic reticulum lumen;1.68080320228631e-06!GO:0006366;transcription from RNA polymerase II promoter;1.71278027121494e-06!GO:0005643;nuclear pore;1.90816001087749e-06!GO:0045786;negative regulation of progression through cell cycle;2.06205196785534e-06!GO:0007264;small GTPase mediated signal transduction;2.26373194042384e-06!GO:0045259;proton-transporting ATP synthase complex;2.30826316662761e-06!GO:0004298;threonine endopeptidase activity;2.49585073436482e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.65753735692773e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.65753735692773e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.65753735692773e-06!GO:0016787;hydrolase activity;2.67201666037476e-06!GO:0006333;chromatin assembly or disassembly;2.7062831970183e-06!GO:0051187;cofactor catabolic process;2.84081286653825e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.85304012611948e-06!GO:0006084;acetyl-CoA metabolic process;3.01089523392741e-06!GO:0065002;intracellular protein transport across a membrane;3.13067650032581e-06!GO:0048475;coated membrane;3.13067650032581e-06!GO:0030117;membrane coat;3.13067650032581e-06!GO:0030120;vesicle coat;3.26734703101752e-06!GO:0030662;coated vesicle membrane;3.26734703101752e-06!GO:0044440;endosomal part;3.34079572453397e-06!GO:0010008;endosome membrane;3.34079572453397e-06!GO:0004386;helicase activity;3.60290574014441e-06!GO:0032561;guanyl ribonucleotide binding;3.7668234303809e-06!GO:0019001;guanyl nucleotide binding;3.7668234303809e-06!GO:0016740;transferase activity;4.11924340691425e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.2445821373521e-06!GO:0009108;coenzyme biosynthetic process;4.38423903353844e-06!GO:0019899;enzyme binding;4.78457236115466e-06!GO:0007010;cytoskeleton organization and biogenesis;4.80662145533526e-06!GO:0065004;protein-DNA complex assembly;5.30843047676826e-06!GO:0043038;amino acid activation;5.5222900367136e-06!GO:0006418;tRNA aminoacylation for protein translation;5.5222900367136e-06!GO:0043039;tRNA aminoacylation;5.5222900367136e-06!GO:0006364;rRNA processing;5.89821365391559e-06!GO:0008026;ATP-dependent helicase activity;5.89821365391559e-06!GO:0030029;actin filament-based process;7.50042674769416e-06!GO:0032446;protein modification by small protein conjugation;7.63260179748853e-06!GO:0016072;rRNA metabolic process;9.22413687152277e-06!GO:0046930;pore complex;1.03584147615931e-05!GO:0009109;coenzyme catabolic process;1.12153072786232e-05!GO:0006752;group transfer coenzyme metabolic process;1.15869086542835e-05!GO:0016567;protein ubiquitination;1.17022928364328e-05!GO:0000785;chromatin;1.18959293581058e-05!GO:0019867;outer membrane;1.19948873975759e-05!GO:0016044;membrane organization and biogenesis;1.19948873975759e-05!GO:0045454;cell redox homeostasis;1.20267261634401e-05!GO:0003713;transcription coactivator activity;1.24156702570466e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.24156702570466e-05!GO:0048522;positive regulation of cellular process;1.3610314317916e-05!GO:0000139;Golgi membrane;1.39372123983539e-05!GO:0065009;regulation of a molecular function;1.51821039600559e-05!GO:0008047;enzyme activator activity;1.64464339663692e-05!GO:0031968;organelle outer membrane;1.64464339663692e-05!GO:0000279;M phase;2.38317399754157e-05!GO:0005769;early endosome;2.70590725922564e-05!GO:0005762;mitochondrial large ribosomal subunit;2.725948164679e-05!GO:0000315;organellar large ribosomal subunit;2.725948164679e-05!GO:0003714;transcription corepressor activity;2.86558748819614e-05!GO:0000245;spliceosome assembly;3.15855281756946e-05!GO:0006613;cotranslational protein targeting to membrane;3.20327322375582e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.50572103405605e-05!GO:0005667;transcription factor complex;3.85511380654995e-05!GO:0005741;mitochondrial outer membrane;4.36002287853984e-05!GO:0050657;nucleic acid transport;4.56048571624213e-05!GO:0051236;establishment of RNA localization;4.56048571624213e-05!GO:0050658;RNA transport;4.56048571624213e-05!GO:0008092;cytoskeletal protein binding;4.79247932904025e-05!GO:0006403;RNA localization;4.81400391652546e-05!GO:0051170;nuclear import;4.89089507283558e-05!GO:0016779;nucleotidyltransferase activity;5.11342935475233e-05!GO:0003697;single-stranded DNA binding;5.13019437892141e-05!GO:0030867;rough endoplasmic reticulum membrane;5.55827997812089e-05!GO:0043623;cellular protein complex assembly;6.14218564443094e-05!GO:0005813;centrosome;6.5265456687286e-05!GO:0050789;regulation of biological process;7.04777282783486e-05!GO:0000151;ubiquitin ligase complex;7.13124880207433e-05!GO:0008654;phospholipid biosynthetic process;7.51251086748462e-05!GO:0016564;transcription repressor activity;7.59374088090671e-05!GO:0005905;coated pit;8.21216777331166e-05!GO:0003724;RNA helicase activity;9.27951169697057e-05!GO:0006606;protein import into nucleus;9.61980389868188e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000111880111009517!GO:0051087;chaperone binding;0.000114343538226334!GO:0006091;generation of precursor metabolites and energy;0.000130545829423767!GO:0006334;nucleosome assembly;0.000130545829423767!GO:0016126;sterol biosynthetic process;0.00013314970315071!GO:0009967;positive regulation of signal transduction;0.000140980481484655!GO:0042802;identical protein binding;0.000141759444449842!GO:0016568;chromatin modification;0.000146475545255431!GO:0031497;chromatin assembly;0.000146550487400955!GO:0006414;translational elongation;0.000167899379523943!GO:0016563;transcription activator activity;0.00017090928808609!GO:0033116;ER-Golgi intermediate compartment membrane;0.00017440591488034!GO:0005774;vacuolar membrane;0.000178658778398962!GO:0005096;GTPase activator activity;0.000196927343192011!GO:0048471;perinuclear region of cytoplasm;0.000217891265160612!GO:0005815;microtubule organizing center;0.000253833218359338!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000257741930625082!GO:0015399;primary active transmembrane transporter activity;0.000257741930625082!GO:0005798;Golgi-associated vesicle;0.0002739764230302!GO:0007265;Ras protein signal transduction;0.000286763113428771!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000293793236261784!GO:0009165;nucleotide biosynthetic process;0.000295104230402597!GO:0006612;protein targeting to membrane;0.000350666889106181!GO:0007242;intracellular signaling cascade;0.000357348008707861!GO:0016853;isomerase activity;0.000358716012761328!GO:0008632;apoptotic program;0.000386161744935088!GO:0005048;signal sequence binding;0.000386161744935088!GO:0051427;hormone receptor binding;0.00040719188895871!GO:0005819;spindle;0.000411137435974363!GO:0051329;interphase of mitotic cell cycle;0.000411390947128925!GO:0000314;organellar small ribosomal subunit;0.000423073706681279!GO:0005763;mitochondrial small ribosomal subunit;0.000423073706681279!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00044975624035566!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000493545297648828!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000502540329723401!GO:0006950;response to stress;0.000504956514614786!GO:0043021;ribonucleoprotein binding;0.000507409259905006!GO:0005765;lysosomal membrane;0.000518069190515202!GO:0043566;structure-specific DNA binding;0.000531488362390936!GO:0009966;regulation of signal transduction;0.000556097458613573!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000571357902146203!GO:0044437;vacuolar part;0.000572759440883899!GO:0006695;cholesterol biosynthetic process;0.000604208533919399!GO:0051325;interphase;0.00060781632471608!GO:0005885;Arp2/3 protein complex;0.000641919249927252!GO:0051789;response to protein stimulus;0.000744476904466221!GO:0006986;response to unfolded protein;0.000744476904466221!GO:0051028;mRNA transport;0.000744476904466221!GO:0008250;oligosaccharyl transferase complex;0.000775255521241707!GO:0050790;regulation of catalytic activity;0.000781906648247211!GO:0035257;nuclear hormone receptor binding;0.000788799337800428!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000828474134296386!GO:0015992;proton transport;0.000828474134296386!GO:0030027;lamellipodium;0.000871990437636686!GO:0006897;endocytosis;0.000884408364617925!GO:0010324;membrane invagination;0.000884408364617925!GO:0006818;hydrogen transport;0.000898786198380017!GO:0008186;RNA-dependent ATPase activity;0.000964899575272008!GO:0015980;energy derivation by oxidation of organic compounds;0.000999801083515824!GO:0001726;ruffle;0.00103422934886826!GO:0051920;peroxiredoxin activity;0.0010351796594301!GO:0008361;regulation of cell size;0.00104114338843826!GO:0003899;DNA-directed RNA polymerase activity;0.00106189822810756!GO:0019843;rRNA binding;0.00109438531047779!GO:0016049;cell growth;0.00118155119116315!GO:0031902;late endosome membrane;0.00122617537482929!GO:0030133;transport vesicle;0.00127339357926966!GO:0016859;cis-trans isomerase activity;0.00127339357926966!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00138214121981991!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00140623259052623!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00144764164784142!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00144764164784142!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00144764164784142!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00145254396068896!GO:0030880;RNA polymerase complex;0.00159247769356346!GO:0043492;ATPase activity, coupled to movement of substances;0.00167114836941808!GO:0018196;peptidyl-asparagine modification;0.00173532560962047!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00173532560962047!GO:0007050;cell cycle arrest;0.00181922428926583!GO:0030695;GTPase regulator activity;0.00196618967468723!GO:0001558;regulation of cell growth;0.00204389065614051!GO:0005874;microtubule;0.0020719051317519!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0021443196206841!GO:0007040;lysosome organization and biogenesis;0.00215859221728088!GO:0048518;positive regulation of biological process;0.0021924342685346!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00237945235318845!GO:0004004;ATP-dependent RNA helicase activity;0.00244610337673701!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00256043865611332!GO:0006509;membrane protein ectodomain proteolysis;0.00268835068272789!GO:0033619;membrane protein proteolysis;0.00268835068272789!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00270675059704108!GO:0046474;glycerophospholipid biosynthetic process;0.00276796598744425!GO:0030041;actin filament polymerization;0.00278108869182026!GO:0004576;oligosaccharyl transferase activity;0.00280636278161158!GO:0044262;cellular carbohydrate metabolic process;0.0028238825847693!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00290392364595713!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00303635189169848!GO:0048487;beta-tubulin binding;0.00303771452822942!GO:0043681;protein import into mitochondrion;0.00304653135064084!GO:0007033;vacuole organization and biogenesis;0.00305319492557286!GO:0003746;translation elongation factor activity;0.00305550080113506!GO:0031324;negative regulation of cellular metabolic process;0.00305550080113506!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00312097163189432!GO:0006839;mitochondrial transport;0.00312097163189432!GO:0007051;spindle organization and biogenesis;0.00337956573095231!GO:0046467;membrane lipid biosynthetic process;0.0034412791526143!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00351672034957282!GO:0000428;DNA-directed RNA polymerase complex;0.00351672034957282!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00377424454010224!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00377424454010224!GO:0065007;biological regulation;0.00395256066453662!GO:0030118;clathrin coat;0.00409876896907104!GO:0017166;vinculin binding;0.00435496708761809!GO:0046489;phosphoinositide biosynthetic process;0.00456381528017705!GO:0008154;actin polymerization and/or depolymerization;0.00459026688983616!GO:0015631;tubulin binding;0.00459026688983616!GO:0006383;transcription from RNA polymerase III promoter;0.00464651314819128!GO:0007266;Rho protein signal transduction;0.00471913911867681!GO:0008139;nuclear localization sequence binding;0.00488581478018724!GO:0008610;lipid biosynthetic process;0.00506122512816437!GO:0048660;regulation of smooth muscle cell proliferation;0.00506179316527358!GO:0007006;mitochondrial membrane organization and biogenesis;0.00526683226539419!GO:0003729;mRNA binding;0.00527384372567149!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00561162869994607!GO:0015002;heme-copper terminal oxidase activity;0.00561162869994607!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00561162869994607!GO:0004129;cytochrome-c oxidase activity;0.00561162869994607!GO:0006626;protein targeting to mitochondrion;0.00574093874519058!GO:0030659;cytoplasmic vesicle membrane;0.00585840107519674!GO:0048500;signal recognition particle;0.00594277946178848!GO:0005684;U2-dependent spliceosome;0.00595484620278151!GO:0005083;small GTPase regulator activity;0.0059813640497755!GO:0031072;heat shock protein binding;0.0062060121426573!GO:0009892;negative regulation of metabolic process;0.00625896745411204!GO:0005791;rough endoplasmic reticulum;0.0063264303953796!GO:0030176;integral to endoplasmic reticulum membrane;0.00633406779229787!GO:0005869;dynactin complex;0.00637537444416646!GO:0016363;nuclear matrix;0.00642120782166392!GO:0030658;transport vesicle membrane;0.00672033764148305!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00676527583621565!GO:0051168;nuclear export;0.00681333060584771!GO:0006891;intra-Golgi vesicle-mediated transport;0.0068487649295097!GO:0022890;inorganic cation transmembrane transporter activity;0.00692752468484046!GO:0006778;porphyrin metabolic process;0.0069959011907708!GO:0033013;tetrapyrrole metabolic process;0.0069959011907708!GO:0043284;biopolymer biosynthetic process;0.00700392336568359!GO:0006979;response to oxidative stress;0.00724349099820215!GO:0016197;endosome transport;0.00740868168579181!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00762014926606505!GO:0006650;glycerophospholipid metabolic process;0.00773130802870027!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00789794457460515!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00808740734934867!GO:0030663;COPI coated vesicle membrane;0.00825595891815661!GO:0030126;COPI vesicle coat;0.00825595891815661!GO:0030521;androgen receptor signaling pathway;0.00857403519027538!GO:0006740;NADPH regeneration;0.00863438432339343!GO:0006098;pentose-phosphate shunt;0.00863438432339343!GO:0007034;vacuolar transport;0.00918275424919405!GO:0046483;heterocycle metabolic process;0.00925863594660953!GO:0030119;AP-type membrane coat adaptor complex;0.00934911425348941!GO:0030132;clathrin coat of coated pit;0.00986930932260428!GO:0051101;regulation of DNA binding;0.00987508724664051!GO:0048468;cell development;0.0100344659947091!GO:0003684;damaged DNA binding;0.0101067824512945!GO:0015036;disulfide oxidoreductase activity;0.0101294104038596!GO:0043433;negative regulation of transcription factor activity;0.010394757883221!GO:0042168;heme metabolic process;0.0110595895406115!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0111288337197344!GO:0045047;protein targeting to ER;0.0111288337197344!GO:0003779;actin binding;0.0111288337197344!GO:0003756;protein disulfide isomerase activity;0.0111288337197344!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0111288337197344!GO:0033673;negative regulation of kinase activity;0.0111288337197344!GO:0006469;negative regulation of protein kinase activity;0.0111288337197344!GO:0001944;vasculature development;0.0116426406406529!GO:0007162;negative regulation of cell adhesion;0.011657372702715!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0118531394767872!GO:0051348;negative regulation of transferase activity;0.0124412266507314!GO:0000059;protein import into nucleus, docking;0.0126875564582066!GO:0006497;protein amino acid lipidation;0.0126875564582066!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0129224441643157!GO:0008637;apoptotic mitochondrial changes;0.012989529891213!GO:0030137;COPI-coated vesicle;0.0131643133976294!GO:0044433;cytoplasmic vesicle part;0.013308770152611!GO:0000786;nucleosome;0.013817884312156!GO:0004177;aminopeptidase activity;0.0140695551424484!GO:0040008;regulation of growth;0.0141070203410409!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0141562800103594!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0141562800103594!GO:0007021;tubulin folding;0.0145188446126241!GO:0043488;regulation of mRNA stability;0.0145188446126241!GO:0043487;regulation of RNA stability;0.0145188446126241!GO:0031901;early endosome membrane;0.0147144607921333!GO:0030833;regulation of actin filament polymerization;0.0148299734131702!GO:0006261;DNA-dependent DNA replication;0.015024020303603!GO:0030131;clathrin adaptor complex;0.0151080613420661!GO:0030134;ER to Golgi transport vesicle;0.0152348498660749!GO:0035258;steroid hormone receptor binding;0.0152627916773901!GO:0030100;regulation of endocytosis;0.0153220999169026!GO:0008312;7S RNA binding;0.0154256743819775!GO:0006289;nucleotide-excision repair;0.0154267063377759!GO:0016301;kinase activity;0.0156180157277737!GO:0051252;regulation of RNA metabolic process;0.0157166107521505!GO:0048659;smooth muscle cell proliferation;0.015908882923611!GO:0030660;Golgi-associated vesicle membrane;0.0160094433398651!GO:0051098;regulation of binding;0.0161362369457911!GO:0045045;secretory pathway;0.0161460610392121!GO:0005099;Ras GTPase activator activity;0.0163513223925802!GO:0043065;positive regulation of apoptosis;0.0165042504281752!GO:0006595;polyamine metabolic process;0.0166782240128499!GO:0030127;COPII vesicle coat;0.0167846835678349!GO:0012507;ER to Golgi transport vesicle membrane;0.0167846835678349!GO:0004674;protein serine/threonine kinase activity;0.017347028594092!GO:0005832;chaperonin-containing T-complex;0.0175859685062046!GO:0006643;membrane lipid metabolic process;0.0176605207527192!GO:0006402;mRNA catabolic process;0.0177332976293151!GO:0005637;nuclear inner membrane;0.0182831228828597!GO:0022408;negative regulation of cell-cell adhesion;0.0184319191877008!GO:0043068;positive regulation of programmed cell death;0.0191025196915087!GO:0000209;protein polyubiquitination;0.0196243805163462!GO:0050662;coenzyme binding;0.0201835066594505!GO:0006352;transcription initiation;0.0207529936579867!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0208962159568419!GO:0000075;cell cycle checkpoint;0.0209902058074406!GO:0016272;prefoldin complex;0.0209948918240692!GO:0051338;regulation of transferase activity;0.0210453512135762!GO:0008234;cysteine-type peptidase activity;0.0210453512135762!GO:0001953;negative regulation of cell-matrix adhesion;0.0211769624297017!GO:0040011;locomotion;0.0211826417550238!GO:0007041;lysosomal transport;0.0213585749536109!GO:0008033;tRNA processing;0.0213585749536109!GO:0003711;transcription elongation regulator activity;0.0213585749536109!GO:0043022;ribosome binding;0.0213585749536109!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0213841941655784!GO:0012506;vesicle membrane;0.0214885044229063!GO:0007088;regulation of mitosis;0.0216287308153151!GO:0035035;histone acetyltransferase binding;0.0218178732427973!GO:0051270;regulation of cell motility;0.0222848158765119!GO:0016125;sterol metabolic process;0.0224533346828253!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0227119047722536!GO:0030032;lamellipodium biogenesis;0.0227119047722536!GO:0001568;blood vessel development;0.0227373105347872!GO:0046822;regulation of nucleocytoplasmic transport;0.0228190730638718!GO:0008538;proteasome activator activity;0.0229274303337647!GO:0051128;regulation of cellular component organization and biogenesis;0.0233893652535732!GO:0016481;negative regulation of transcription;0.023892454829556!GO:0051059;NF-kappaB binding;0.0246168662138513!GO:0043281;regulation of caspase activity;0.0253040570300227!GO:0000305;response to oxygen radical;0.0255126993093099!GO:0043086;negative regulation of catalytic activity;0.0256412247287874!GO:0006401;RNA catabolic process;0.0258585177597276!GO:0030518;steroid hormone receptor signaling pathway;0.0259212824975215!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0260175984675996!GO:0006779;porphyrin biosynthetic process;0.0266471093711006!GO:0033014;tetrapyrrole biosynthetic process;0.0266471093711006!GO:0032507;maintenance of cellular protein localization;0.0272502411620135!GO:0050811;GABA receptor binding;0.0275524849533252!GO:0045926;negative regulation of growth;0.0285092300634989!GO:0031625;ubiquitin protein ligase binding;0.0287820575783107!GO:0040012;regulation of locomotion;0.029204282186203!GO:0006506;GPI anchor biosynthetic process;0.0292865471171345!GO:0033559;unsaturated fatty acid metabolic process;0.0298325919673848!GO:0006636;unsaturated fatty acid biosynthetic process;0.0298325919673848!GO:0030145;manganese ion binding;0.0298795028601855!GO:0042987;amyloid precursor protein catabolic process;0.0300779116744798!GO:0003678;DNA helicase activity;0.030455570918831!GO:0006917;induction of apoptosis;0.0311301619523726!GO:0051287;NAD binding;0.0317286428539049!GO:0004197;cysteine-type endopeptidase activity;0.0317845082217062!GO:0044452;nucleolar part;0.0318170492175554!GO:0046519;sphingoid metabolic process;0.0318975198842782!GO:0031529;ruffle organization and biogenesis;0.0318975198842782!GO:0004680;casein kinase activity;0.0318975198842782!GO:0045792;negative regulation of cell size;0.031960345330584!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0324512754590675!GO:0010257;NADH dehydrogenase complex assembly;0.0324512754590675!GO:0033108;mitochondrial respiratory chain complex assembly;0.0324512754590675!GO:0000082;G1/S transition of mitotic cell cycle;0.0325050779079025!GO:0008180;signalosome;0.0325873820417208!GO:0001836;release of cytochrome c from mitochondria;0.0327442018146937!GO:0005657;replication fork;0.0329866175431622!GO:0042158;lipoprotein biosynthetic process;0.0337493035302419!GO:0022415;viral reproductive process;0.0340745530066267!GO:0006739;NADP metabolic process;0.0341194849687288!GO:0006417;regulation of translation;0.0341674382198992!GO:0043549;regulation of kinase activity;0.0341674382198992!GO:0005092;GDP-dissociation inhibitor activity;0.0342183539862198!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0345006145329719!GO:0030308;negative regulation of cell growth;0.0346621875816679!GO:0005784;translocon complex;0.035963470564608!GO:0030384;phosphoinositide metabolic process;0.0361994614047668!GO:0042585;germinal vesicle;0.0369439150884129!GO:0001952;regulation of cell-matrix adhesion;0.0374434620262281!GO:0006505;GPI anchor metabolic process;0.0376129816023357!GO:0045185;maintenance of protein localization;0.0377386950023896!GO:0007017;microtubule-based process;0.0377386950023896!GO:0006516;glycoprotein catabolic process;0.038235223854389!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0383832816397465!GO:0012502;induction of programmed cell death;0.0384393524887249!GO:0006644;phospholipid metabolic process;0.0384546106530191!GO:0006118;electron transport;0.0384835816596989!GO:0051336;regulation of hydrolase activity;0.0387714097128187!GO:0030125;clathrin vesicle coat;0.0387714097128187!GO:0030665;clathrin coated vesicle membrane;0.0387714097128187!GO:0007052;mitotic spindle organization and biogenesis;0.0390730068988269!GO:0051539;4 iron, 4 sulfur cluster binding;0.0394471558836519!GO:0008094;DNA-dependent ATPase activity;0.0398819046019974!GO:0004722;protein serine/threonine phosphatase activity;0.0398819046019974!GO:0051540;metal cluster binding;0.0398819046019974!GO:0051536;iron-sulfur cluster binding;0.0398819046019974!GO:0004448;isocitrate dehydrogenase activity;0.0402530456106099!GO:0006783;heme biosynthetic process;0.0410365139936346!GO:0045859;regulation of protein kinase activity;0.0411760692662541!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0412922318098421!GO:0033043;regulation of organelle organization and biogenesis;0.0412922318098421!GO:0006376;mRNA splice site selection;0.0415090230023819!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0415090230023819!GO:0031272;regulation of pseudopodium formation;0.0420622472959671!GO:0031269;pseudopodium formation;0.0420622472959671!GO:0031344;regulation of cell projection organization and biogenesis;0.0420622472959671!GO:0031268;pseudopodium organization and biogenesis;0.0420622472959671!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0420622472959671!GO:0031274;positive regulation of pseudopodium formation;0.0420622472959671!GO:0030865;cortical cytoskeleton organization and biogenesis;0.04225781357369!GO:0006611;protein export from nucleus;0.04225781357369!GO:0000049;tRNA binding;0.042315421447729!GO:0006749;glutathione metabolic process;0.0425047635021868!GO:0051235;maintenance of localization;0.0427882107482671!GO:0022407;regulation of cell-cell adhesion;0.043857735316846!GO:0006919;caspase activation;0.0443079805365892!GO:0006458;'de novo' protein folding;0.0447530720198825!GO:0051084;'de novo' posttranslational protein folding;0.0447530720198825!GO:0008283;cell proliferation;0.0449592607005552!GO:0006672;ceramide metabolic process;0.0451172488085837!GO:0051090;regulation of transcription factor activity;0.045548700448725!GO:0018193;peptidyl-amino acid modification;0.0455667917466524!GO:0042982;amyloid precursor protein metabolic process;0.0466428453199439!GO:0000096;sulfur amino acid metabolic process;0.0472182779408912!GO:0051651;maintenance of cellular localization;0.0474691491992041!GO:0006892;post-Golgi vesicle-mediated transport;0.0482403302097144!GO:0019206;nucleoside kinase activity;0.0483761207132666!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0483761207132666!GO:0050681;androgen receptor binding;0.0483761207132666!GO:0030496;midbody;0.0483761207132666!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0485589460332013!GO:0008287;protein serine/threonine phosphatase complex;0.0487012985356934!GO:0048144;fibroblast proliferation;0.0487638046101809!GO:0048145;regulation of fibroblast proliferation;0.0487638046101809!GO:0005100;Rho GTPase activator activity;0.0491098392326238!GO:0000118;histone deacetylase complex;0.049159738905262!GO:0030508;thiol-disulfide exchange intermediate activity;0.0496786330899423!GO:0000776;kinetochore;0.0496786330899423!GO:0031418;L-ascorbic acid binding;0.0497953482231296 | |||
|sample_id=11265 | |sample_id=11265 | ||
|sample_note=Originally library704 tailing failed, the remaining sample is being rerun | |sample_note=Originally library704 tailing failed, the remaining sample is being rerun | ||
| Line 76: | Line 105: | ||
|sample_tissue=capillary | |sample_tissue=capillary | ||
|top_motifs=SOX{8,9,10}:2.0579006976;NFATC1..3:1.24529039934;ZNF423:1.24061982496;PAX1,9:1.21445882898;TLX1..3_NFIC{dimer}:1.10979180669;RXR{A,B,G}:1.03386238699;ZNF238:0.974754489292;TP53:0.971219876217;SOX2:0.948958645942;LEF1_TCF7_TCF7L1,2:0.930725148168;ZBTB6:0.878276096475;TFAP4:0.876782428038;XCPE1{core}:0.811259415336;MYOD1:0.803062435053;ARID5B:0.799067365576;FOX{I1,J2}:0.773012873498;ZNF148:0.733105837157;ETS1,2:0.726280126571;IKZF1:0.721570305553;ADNP_IRX_SIX_ZHX:0.712606952473;HBP1_HMGB_SSRP1_UBTF:0.693539971882;ELF1,2,4:0.664113134477;FOXL1:0.638635907188;SOX17:0.637957583687;TEAD1:0.58292637555;HAND1,2:0.543016281393;HES1:0.52689888421;SP1:0.505301858008;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.504801454012;TFAP2{A,C}:0.502226228809;NR5A1,2:0.501431223474;LHX3,4:0.497759229326;POU3F1..4:0.496414608947;GATA6:0.492012964226;FOXD3:0.442420843982;SPIB:0.420875697283;ZIC1..3:0.418624631564;HIC1:0.416158607927;FOXQ1:0.385300072109;SPZ1:0.364494699664;LMO2:0.362085060324;REST:0.359786997561;T:0.35533404549;TAL1_TCF{3,4,12}:0.347990110681;TFAP2B:0.340233441034;GZF1:0.339004202228;IKZF2:0.331084836087;SOX5:0.328463671414;TEF:0.311524981099;STAT2,4,6:0.31138265686;AR:0.27582307651;NFKB1_REL_RELA:0.249591883592;EBF1:0.231707262596;TBP:0.224609294834;HNF4A_NR2F1,2:0.22452024683;YY1:0.210280822458;PAX5:0.209784802599;NANOG:0.192537704858;FOX{D1,D2}:0.184134851854;RREB1:0.174672525913;PAX6:0.174603847382;UFEwm:0.173509786738;bHLH_family:0.158700829161;GFI1B:0.14969551363;HOX{A5,B5}:0.141417615415;NKX2-3_NKX2-5:0.141324563143;NFE2:0.139039952117;GATA4:0.124360832411;TFCP2:0.111763047842;GCM1,2:0.0987349586279;PITX1..3:0.0894303895588;FOX{F1,F2,J1}:0.0759333243432;EVI1:0.0648638156157;BACH2:0.0608562428848;MYB:0.0527708319552;SMAD1..7,9:0.0480045173298;ONECUT1,2:0.0417668938316;MAZ:0.0404994836504;ALX1:0.0387817547788;ZFP161:0.0204798410304;CRX:0.00813381937805;HMGA1,2:0.00113641780707;FOS_FOS{B,L1}_JUN{B,D}:-0.0023107236647;SRF:-0.0039930825082;XBP1:-0.0118847452382;FOXA2:-0.0158850231807;GTF2A1,2:-0.0165934589786;FOXM1:-0.026701822954;GFI1:-0.028829507477;PBX1:-0.0330939359061;NHLH1,2:-0.0367541973058;NKX2-2,8:-0.0533901405288;SPI1:-0.057280527103;MEF2{A,B,C,D}:-0.0663089479744;IRF1,2:-0.0927701893106;ATF2:-0.10805928478;MED-1{core}:-0.112069389287;PATZ1:-0.133302342176;MTE{core}:-0.139169269935;MYBL2:-0.141712501595;HNF1A:-0.152419113259;SNAI1..3:-0.156347356404;NFY{A,B,C}:-0.158519339667;GTF2I:-0.16719675782;PRDM1:-0.187832432476;GLI1..3:-0.191374099818;DMAP1_NCOR{1,2}_SMARC:-0.192878760213;RORA:-0.200500087613;ZNF384:-0.211582328834;TLX2:-0.213178672136;NFE2L2:-0.21407923045;POU1F1:-0.214207329546;FOSL2:-0.214265576027;POU6F1:-0.217699282487;SREBF1,2:-0.227684202117;TFDP1:-0.232156130629;EP300:-0.255251229299;ZNF143:-0.262564842298;NANOG{mouse}:-0.271832668059;ESR1:-0.276461267664;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.278897216095;NRF1:-0.303863091815;FOXO1,3,4:-0.308645092779;CUX2:-0.311219833819;E2F1..5:-0.3150807394;ESRRA:-0.329109832279;DBP:-0.329746965966;EGR1..3:-0.341367340034;JUN:-0.351949600503;NR3C1:-0.361113152836;PPARG:-0.362959069514;NFE2L1:-0.382635516571;FOXP1:-0.387220215019;CDC5L:-0.403368189734;EN1,2:-0.405825509355;PAX8:-0.426361893353;MTF1:-0.426497725578;ALX4:-0.439174992932;KLF4:-0.457528122849;HIF1A:-0.462190310035;RFX1:-0.469819002172;NKX3-2:-0.472021653288;TOPORS:-0.477124353615;RBPJ:-0.479731076646;CEBPA,B_DDIT3:-0.479798032526;HMX1:-0.491334687718;STAT1,3:-0.523558024884;RXRA_VDR{dimer}:-0.532446478997;ZEB1:-0.535888954804;TGIF1:-0.540926633268;CDX1,2,4:-0.586246067363;ATF6:-0.588326589791;RUNX1..3:-0.589613857647;HSF1,2:-0.633173010363;OCT4_SOX2{dimer}:-0.657727451879;IRF7:-0.663206835958;HLF:-0.682695862619;BREu{core}:-0.702846163231;MYFfamily:-0.703785486469;NFIX:-0.705654358002;NR1H4:-0.714135262473;PAX2:-0.720799320587;TBX4,5:-0.721573277683;PDX1:-0.736748623184;NR6A1:-0.755577130142;POU5F1:-0.769695241281;CREB1:-0.792249476012;PAX3,7:-0.801334388;ELK1,4_GABP{A,B1}:-0.804693306558;NFIL3:-0.814994111412;PAX4:-0.848157732324;MZF1:-0.863421200097;BPTF:-0.864114464432;PRRX1,2:-0.925204764506;FOXP3:-0.955670024558;ATF5_CREB3:-0.965293145384;POU2F1..3:-0.970737387833;MAFB:-1.01099217959;STAT5{A,B}:-1.06206292011;FOXN1:-1.11067571983;ATF4:-1.12337810508;HOXA9_MEIS1:-1.20105652713;AHR_ARNT_ARNT2:-1.2288416366;ZBTB16:-1.26382054093;NKX2-1,4:-1.28385157174;HOX{A6,A7,B6,B7}:-1.28761509302;HOX{A4,D4}:-1.38687436324;VSX1,2:-1.44056213449;RFX2..5_RFXANK_RFXAP:-1.46403536818;AIRE:-1.50922905731;NKX6-1,2:-1.52614844496;NKX3-1:-1.69368285895 | |top_motifs=SOX{8,9,10}:2.0579006976;NFATC1..3:1.24529039934;ZNF423:1.24061982496;PAX1,9:1.21445882898;TLX1..3_NFIC{dimer}:1.10979180669;RXR{A,B,G}:1.03386238699;ZNF238:0.974754489292;TP53:0.971219876217;SOX2:0.948958645942;LEF1_TCF7_TCF7L1,2:0.930725148168;ZBTB6:0.878276096475;TFAP4:0.876782428038;XCPE1{core}:0.811259415336;MYOD1:0.803062435053;ARID5B:0.799067365576;FOX{I1,J2}:0.773012873498;ZNF148:0.733105837157;ETS1,2:0.726280126571;IKZF1:0.721570305553;ADNP_IRX_SIX_ZHX:0.712606952473;HBP1_HMGB_SSRP1_UBTF:0.693539971882;ELF1,2,4:0.664113134477;FOXL1:0.638635907188;SOX17:0.637957583687;TEAD1:0.58292637555;HAND1,2:0.543016281393;HES1:0.52689888421;SP1:0.505301858008;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.504801454012;TFAP2{A,C}:0.502226228809;NR5A1,2:0.501431223474;LHX3,4:0.497759229326;POU3F1..4:0.496414608947;GATA6:0.492012964226;FOXD3:0.442420843982;SPIB:0.420875697283;ZIC1..3:0.418624631564;HIC1:0.416158607927;FOXQ1:0.385300072109;SPZ1:0.364494699664;LMO2:0.362085060324;REST:0.359786997561;T:0.35533404549;TAL1_TCF{3,4,12}:0.347990110681;TFAP2B:0.340233441034;GZF1:0.339004202228;IKZF2:0.331084836087;SOX5:0.328463671414;TEF:0.311524981099;STAT2,4,6:0.31138265686;AR:0.27582307651;NFKB1_REL_RELA:0.249591883592;EBF1:0.231707262596;TBP:0.224609294834;HNF4A_NR2F1,2:0.22452024683;YY1:0.210280822458;PAX5:0.209784802599;NANOG:0.192537704858;FOX{D1,D2}:0.184134851854;RREB1:0.174672525913;PAX6:0.174603847382;UFEwm:0.173509786738;bHLH_family:0.158700829161;GFI1B:0.14969551363;HOX{A5,B5}:0.141417615415;NKX2-3_NKX2-5:0.141324563143;NFE2:0.139039952117;GATA4:0.124360832411;TFCP2:0.111763047842;GCM1,2:0.0987349586279;PITX1..3:0.0894303895588;FOX{F1,F2,J1}:0.0759333243432;EVI1:0.0648638156157;BACH2:0.0608562428848;MYB:0.0527708319552;SMAD1..7,9:0.0480045173298;ONECUT1,2:0.0417668938316;MAZ:0.0404994836504;ALX1:0.0387817547788;ZFP161:0.0204798410304;CRX:0.00813381937805;HMGA1,2:0.00113641780707;FOS_FOS{B,L1}_JUN{B,D}:-0.0023107236647;SRF:-0.0039930825082;XBP1:-0.0118847452382;FOXA2:-0.0158850231807;GTF2A1,2:-0.0165934589786;FOXM1:-0.026701822954;GFI1:-0.028829507477;PBX1:-0.0330939359061;NHLH1,2:-0.0367541973058;NKX2-2,8:-0.0533901405288;SPI1:-0.057280527103;MEF2{A,B,C,D}:-0.0663089479744;IRF1,2:-0.0927701893106;ATF2:-0.10805928478;MED-1{core}:-0.112069389287;PATZ1:-0.133302342176;MTE{core}:-0.139169269935;MYBL2:-0.141712501595;HNF1A:-0.152419113259;SNAI1..3:-0.156347356404;NFY{A,B,C}:-0.158519339667;GTF2I:-0.16719675782;PRDM1:-0.187832432476;GLI1..3:-0.191374099818;DMAP1_NCOR{1,2}_SMARC:-0.192878760213;RORA:-0.200500087613;ZNF384:-0.211582328834;TLX2:-0.213178672136;NFE2L2:-0.21407923045;POU1F1:-0.214207329546;FOSL2:-0.214265576027;POU6F1:-0.217699282487;SREBF1,2:-0.227684202117;TFDP1:-0.232156130629;EP300:-0.255251229299;ZNF143:-0.262564842298;NANOG{mouse}:-0.271832668059;ESR1:-0.276461267664;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.278897216095;NRF1:-0.303863091815;FOXO1,3,4:-0.308645092779;CUX2:-0.311219833819;E2F1..5:-0.3150807394;ESRRA:-0.329109832279;DBP:-0.329746965966;EGR1..3:-0.341367340034;JUN:-0.351949600503;NR3C1:-0.361113152836;PPARG:-0.362959069514;NFE2L1:-0.382635516571;FOXP1:-0.387220215019;CDC5L:-0.403368189734;EN1,2:-0.405825509355;PAX8:-0.426361893353;MTF1:-0.426497725578;ALX4:-0.439174992932;KLF4:-0.457528122849;HIF1A:-0.462190310035;RFX1:-0.469819002172;NKX3-2:-0.472021653288;TOPORS:-0.477124353615;RBPJ:-0.479731076646;CEBPA,B_DDIT3:-0.479798032526;HMX1:-0.491334687718;STAT1,3:-0.523558024884;RXRA_VDR{dimer}:-0.532446478997;ZEB1:-0.535888954804;TGIF1:-0.540926633268;CDX1,2,4:-0.586246067363;ATF6:-0.588326589791;RUNX1..3:-0.589613857647;HSF1,2:-0.633173010363;OCT4_SOX2{dimer}:-0.657727451879;IRF7:-0.663206835958;HLF:-0.682695862619;BREu{core}:-0.702846163231;MYFfamily:-0.703785486469;NFIX:-0.705654358002;NR1H4:-0.714135262473;PAX2:-0.720799320587;TBX4,5:-0.721573277683;PDX1:-0.736748623184;NR6A1:-0.755577130142;POU5F1:-0.769695241281;CREB1:-0.792249476012;PAX3,7:-0.801334388;ELK1,4_GABP{A,B1}:-0.804693306558;NFIL3:-0.814994111412;PAX4:-0.848157732324;MZF1:-0.863421200097;BPTF:-0.864114464432;PRRX1,2:-0.925204764506;FOXP3:-0.955670024558;ATF5_CREB3:-0.965293145384;POU2F1..3:-0.970737387833;MAFB:-1.01099217959;STAT5{A,B}:-1.06206292011;FOXN1:-1.11067571983;ATF4:-1.12337810508;HOXA9_MEIS1:-1.20105652713;AHR_ARNT_ARNT2:-1.2288416366;ZBTB16:-1.26382054093;NKX2-1,4:-1.28385157174;HOX{A6,A7,B6,B7}:-1.28761509302;HOX{A4,D4}:-1.38687436324;VSX1,2:-1.44056213449;RFX2..5_RFXANK_RFXAP:-1.46403536818;AIRE:-1.50922905731;NKX6-1,2:-1.52614844496;NKX3-1:-1.69368285895 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11265-116G5;search_select_hide=table117:FF:11265-116G5 | |||
}} | }} | ||
Latest revision as of 16:29, 3 June 2020
| Name: | Endothelial Cells - Microvascular, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11925 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11925
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11925
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.467 |
| 10 | 10 | 0.601 |
| 100 | 100 | 0.194 |
| 101 | 101 | 0.327 |
| 102 | 102 | 0.557 |
| 103 | 103 | 0.586 |
| 104 | 104 | 0.977 |
| 105 | 105 | 0.659 |
| 106 | 106 | 0.0514 |
| 107 | 107 | 0.0325 |
| 108 | 108 | 0.798 |
| 109 | 109 | 0.0264 |
| 11 | 11 | 0.0929 |
| 110 | 110 | 0.129 |
| 111 | 111 | 0.238 |
| 112 | 112 | 0.425 |
| 113 | 113 | 0.383 |
| 114 | 114 | 0.245 |
| 115 | 115 | 0.934 |
| 116 | 116 | 0.273 |
| 117 | 117 | 0.377 |
| 118 | 118 | 0.778 |
| 119 | 119 | 0.283 |
| 12 | 12 | 0.858 |
| 120 | 120 | 0.0327 |
| 121 | 121 | 0.719 |
| 122 | 122 | 0.846 |
| 123 | 123 | 0.165 |
| 124 | 124 | 0.157 |
| 125 | 125 | 0.884 |
| 126 | 126 | 0.814 |
| 127 | 127 | 0.383 |
| 128 | 128 | 0.514 |
| 129 | 129 | 0.152 |
| 13 | 13 | 0.125 |
| 130 | 130 | 0.566 |
| 131 | 131 | 0.333 |
| 132 | 132 | 0.0692 |
| 133 | 133 | 0.179 |
| 134 | 134 | 0.743 |
| 135 | 135 | 0.0763 |
| 136 | 136 | 0.16 |
| 137 | 137 | 0.435 |
| 138 | 138 | 0.911 |
| 139 | 139 | 0.66 |
| 14 | 14 | 0.885 |
| 140 | 140 | 0.0888 |
| 141 | 141 | 0.672 |
| 142 | 142 | 0.567 |
| 143 | 143 | 0.153 |
| 144 | 144 | 0.667 |
| 145 | 145 | 0.194 |
| 146 | 146 | 0.338 |
| 147 | 147 | 0.136 |
| 148 | 148 | 0.463 |
| 149 | 149 | 0.00857 |
| 15 | 15 | 0.807 |
| 150 | 150 | 0.223 |
| 151 | 151 | 0.523 |
| 152 | 152 | 0.0385 |
| 153 | 153 | 0.412 |
| 154 | 154 | 0.0931 |
| 155 | 155 | 0.797 |
| 156 | 156 | 0.935 |
| 157 | 157 | 0.891 |
| 158 | 158 | 0.22 |
| 159 | 159 | 0.434 |
| 16 | 16 | 0.384 |
| 160 | 160 | 0.1 |
| 161 | 161 | 0.947 |
| 162 | 162 | 0.929 |
| 163 | 163 | 0.865 |
| 164 | 164 | 0.373 |
| 165 | 165 | 0.455 |
| 166 | 166 | 0.258 |
| 167 | 167 | 0.0466 |
| 168 | 168 | 0.206 |
| 169 | 169 | 0.0276 |
| 17 | 17 | 0.11 |
| 18 | 18 | 0.884 |
| 19 | 19 | 0.172 |
| 2 | 2 | 0.375 |
| 20 | 20 | 0.819 |
| 21 | 21 | 0.993 |
| 22 | 22 | 0.126 |
| 23 | 23 | 0.201 |
| 24 | 24 | 0.48 |
| 25 | 25 | 0.53 |
| 26 | 26 | 0.887 |
| 27 | 27 | 0.123 |
| 28 | 28 | 0.216 |
| 29 | 29 | 0.445 |
| 3 | 3 | 0.613 |
| 30 | 30 | 0.841 |
| 31 | 31 | 0.52 |
| 32 | 32 | 0.432 |
| 33 | 33 | 0.0576 |
| 34 | 34 | 0.144 |
| 35 | 35 | 0.779 |
| 36 | 36 | 0.0254 |
| 37 | 37 | 0.165 |
| 38 | 38 | 0.076 |
| 39 | 39 | 0.175 |
| 4 | 4 | 0.772 |
| 40 | 40 | 1.17394e-4 |
| 41 | 41 | 0.074 |
| 42 | 42 | 0.93 |
| 43 | 43 | 0.483 |
| 44 | 44 | 0.288 |
| 45 | 45 | 0.258 |
| 46 | 46 | 0.296 |
| 47 | 47 | 0.939 |
| 48 | 48 | 0.209 |
| 49 | 49 | 0.752 |
| 5 | 5 | 0.846 |
| 50 | 50 | 0.248 |
| 51 | 51 | 0.485 |
| 52 | 52 | 0.86 |
| 53 | 53 | 0.74 |
| 54 | 54 | 0.468 |
| 55 | 55 | 0.6 |
| 56 | 56 | 0.52 |
| 57 | 57 | 0.747 |
| 58 | 58 | 0.368 |
| 59 | 59 | 0.109 |
| 6 | 6 | 0.046 |
| 60 | 60 | 0.634 |
| 61 | 61 | 0.629 |
| 62 | 62 | 0.603 |
| 63 | 63 | 0.437 |
| 64 | 64 | 0.636 |
| 65 | 65 | 0.0845 |
| 66 | 66 | 0.368 |
| 67 | 67 | 0.645 |
| 68 | 68 | 0.115 |
| 69 | 69 | 0.736 |
| 7 | 7 | 0.767 |
| 70 | 70 | 0.612 |
| 71 | 71 | 0.863 |
| 72 | 72 | 0.934 |
| 73 | 73 | 0.00862 |
| 74 | 74 | 0.178 |
| 75 | 75 | 0.321 |
| 76 | 76 | 0.449 |
| 77 | 77 | 0.054 |
| 78 | 78 | 0.31 |
| 79 | 79 | 0.067 |
| 8 | 8 | 0.0378 |
| 80 | 80 | 0.791 |
| 81 | 81 | 0.538 |
| 82 | 82 | 0.444 |
| 83 | 83 | 0.384 |
| 84 | 84 | 0.194 |
| 85 | 85 | 0.533 |
| 86 | 86 | 0.933 |
| 87 | 87 | 0.0597 |
| 88 | 88 | 0.97 |
| 89 | 89 | 0.167 |
| 9 | 9 | 0.471 |
| 90 | 90 | 0.264 |
| 91 | 91 | 0.865 |
| 92 | 92 | 0.338 |
| 93 | 93 | 0.303 |
| 94 | 94 | 0.669 |
| 95 | 95 | 0.0648 |
| 96 | 96 | 0.632 |
| 97 | 97 | 0.227 |
| 98 | 98 | 0.356 |
| 99 | 99 | 0.0467 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11925
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000050 human microvascular endothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002144 (capillary endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0010523 (microcirculatory vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001915 (endothelium of capillary)
0004535 (cardiovascular system)
0001982 (capillary)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000050 (human microvascular endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
