FF:11340-117F8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004981 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004981 | ||
|accession_numbers=CAGE;DRX008218;DRR009090;DRZ000515;DRZ001900;DRZ011865;DRZ013250 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037028;DRR041394;DRZ007036 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0004573,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000048,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.48!396.43!SOX18;;chr8:55370487..55370503,+!p1@SOX17!2.19!152.39!SOX17;;chr8:10588010..10588030,-!p1@SOX7!2.11!126.71!SOX7;;chr21:39870339..39870443,-!p1@ERG!2.08!118.37!ERG;;chr17:6926362..6926377,+!p1@BCL6B!1.95!88.52!BCL6B;;chr18:53068911..53068935,-!p4@TCF4!1.81!71.51!TCF4;;chr12:96588368..96588394,+!p3@ELK3!1.70!127.40!ELK3;;chr19:13213511..13213545,-!p2@LYL1!1.65!47.56!LYL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.59!37.84!ZBED1;;chr1:6479968..6479986,-!p1@HES2!1.49!29.85!HES2;;chr6:34204921..34204939,+!p3@HMGA1!1.40!694.98!HMGA1;;chr22:19748231..19748317,+!p1@TBX1!1.38!23.26!TBX1;;chr10:94449703..94449718,+!p1@HHEX!1.26!65.26!HHEX;;chr16:86600426..86600441,+!p1@FOXC2!1.17!34.02!FOXC2;;chr19:13213662..13213686,-!p1@LYL1!1.17!20.48!LYL1;;chr19:13213399..13213414,-!p6@LYL1!1.17!13.89!LYL1;;chr3:169381420..169381535,-!p1@MECOM!1.16!15.62!MECOM;;chr17:46655672..46655697,-!p3@HOXB4!1.15!13.19!HOXB4;;chr1:47695003..47695042,-!p2@TAL1!1.04!10.07!TAL1;;chr3:128206762..128206781,-!p2@GATA2!1.02!60.40!GATA2;;chr4:174451370..174451387,-!p1@HAND2!1.02!9.37!HAND2;;chr22:38597987..38598021,+!p2@MAFF!1.00!56.24!MAFF;;chr17:41622925..41622976,-!p3@ETV4!1.00!13.54!ETV4;;chr4:174450089..174450153,-!p2@HAND2!1.00!9.03!HAND2;;chr17:46655704..46655718,-!p2@HOXB4!0.98!12.84!HOXB4;;chr9:14314131..14314147,-!p2@NFIB!0.96!46.52!NFIB;;chr18:22932080..22932170,-!p1@ZNF521!0.95!34.71!ZNF521;;chr2:46524537..46524553,+!p1@EPAS1!0.94!780.37!EPAS1;;chr18:19749541..19749557,+!p1@GATA6!0.92!23.95!GATA6;;chr18:53068982..53068993,-!p20@TCF4!0.92!7.29!TCF4;;chr20:42543441..42543497,+!p1@TOX2!0.91!33.67!TOX2;;chr17:6926381..6926392,+!p2@BCL6B!0.90!6.94!BCL6B;;chr11:65429891..65429915,-!p7@RELA!0.86!6.25!RELA;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.77!ETV4;;chr6:28321971..28321995,-!p1@ZNF323!0.84!5.90!ZNF323;;chr14:74256787..74256858,-!p6@C14orf43!0.84!5.90!C14orf43;;chr12:124873852..124873881,-!p3@NCOR2!0.83!36.80!NCOR2;;chr13:72441315..72441454,-!p1@DACH1!0.83!12.15!DACH1;;chr20:42543506..42543549,+!p2@TOX2!0.82!14.23!TOX2;;chr19:53496768..53496799,-!p1@ZNF702P!0.82!9.03!ZNF702P;;chr6:34204672..34204692,+!p1@HMGA1!0.81!663.04!HMGA1;;chr3:168864315..168864339,-!p2@MECOM!0.81!9.37!MECOM;;chr19:49865646..49865718,-!p1@TEAD2!0.80!49.64!TEAD2;;chr10:8096631..8096660,+!p1@GATA3!0.80!6.60!GATA3;;chr20:42295745..42295765,+!p1@MYBL2!0.79!91.99!MYBL2;;chr17:1958388..1958404,+!p1@HIC1!0.79!36.10!HIC1;;chr10:94449675..94449694,+!p2@HHEX!0.79!14.93!HHEX;;chr10:8096772..8096787,+!p2@GATA3!0.79!6.25!GATA3;;chr19:13213555..13213568,-!p5@LYL1!0.79!5.21!LYL1;;chr9:14314566..14314618,-!p1@NFIB!0.78!65.96!NFIB;;chr18:53257001..53257015,-!p5@TCF4!0.78!9.03!TCF4;;chr5:92918919..92918942,+!p1@NR2F1!0.77!23.61!NR2F1;;chr19:1652555..1652568,-!p2@TCF3!0.77!21.87!TCF3;;chr11:65430554..65430579,-!p3@RELA!0.77!13.54!RELA;;chr20:6748325..6748352,+!p1@BMP2!0.77!7.29!BMP2;;chr19:46801639..46801699,+!p1@HIF3A!0.77!4.86!HIF3A;;chr8:11561684..11561751,+!p1@GATA4!0.77!4.86!GATA4;;chr8:55370720..55370733,+!p2@SOX17!0.77!4.86!SOX17;;chr19:13213465..13213478,-!p7@LYL1!0.77!4.86!LYL1;;chr10:31288398..31288455,-!p2@ZNF438!0.75!5.55!ZNF438;;chr20:50159198..50159299,-!p1@NFATC2!0.74!6.94!NFATC2;;chr9:16705069..16705086,-!p3@BNC2!0.74!4.51!BNC2;;chr12:66218255..66218304,+!p3@HMGA2!0.73!12.84!HMGA2;;chr9:14083467..14083483,-!p4@NFIB!0.72!11.46!NFIB;;chr15:96873921..96873946,+!p1@NR2F2!0.71!132.61!NR2F2;;chr11:128563948..128564003,+!p1@FLI1!0.71!55.89!FLI1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.71!40.96!PPP1R13L;;chr11:65687362..65687436,+!p3@DRAP1!0.71!20.83!DRAP1;;chr18:53068940..53068951,-!p21@TCF4!0.71!4.17!TCF4;;chr7:139741594..139741615,-!p5@PARP12!0.71!4.17!PARP12;;chr3:178789522..178789564,-!p2@ZMAT3!0.69!32.63!ZMAT3;;chr4:146403912..146403972,+!p5@SMAD1!0.69!5.21!SMAD1;;chr17:41622834..41622883,-!p6@ETV4!0.69!4.86!ETV4;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.51!BNC1;;chr7:149470641..149470694,-!p1@ZNF467!0.68!19.44!ZNF467;;chr6:126070769..126070801,+!p1@HEY2!0.68!4.51!HEY2;;chr13:41240737..41240787,-!p1@FOXO1!0.66!49.64!FOXO1;;chr19:49864746..49864780,-!p2@TEAD2!0.66!5.21!TEAD2;;chr3:170076314..170076334,+!p2@SKIL!0.66!4.86!SKIL;;chr12:124873357..124873401,-!p1@NCOR2!0.65!47.56!NCOR2;;chr20:42295713..42295738,+!p2@MYBL2!0.65!23.95!MYBL2;;chr6:10412600..10412637,-!p1@TFAP2A!0.65!6.25!TFAP2A;;chr18:53068893..53068902,-!p28@TCF4!0.65!3.47!TCF4;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!5.90!ZBTB16;;chr5:92918894..92918912,+!p2@NR2F1!0.63!12.15!NR2F1;;chrX:66763856..66763896,+!p1@AR!0.62!4.86!AR;;chr7:115670804..115670825,-!p1@TFEC!0.62!3.12!TFEC;;chr19:13136057..13136085,+!p11@NFIX!0.62!3.12!NFIX;;chr4:146404119..146404158,+!p9@SMAD1!0.62!3.12!SMAD1;;chr4:146404160..146404186,+!p13@SMAD1!0.62!3.12!SMAD1;;chr1:156470494..156470505,-!p3@MEF2D!0.61!4.86!MEF2D;;chr6:21597765..21597779,+!p2@SOX4!0.60!29.16!SOX4;;chr6:130339710..130339745,+!p1@L3MBTL3!0.60!28.47!L3MBTL3;;chr13:41240717..41240735,-!p2@FOXO1!0.60!24.30!FOXO1;;chr1:8763440..8763460,-!p2@RERE!0.60!18.05!RERE;;chr12:3069037..3069119,+!p2@TEAD4!0.60!12.15!TEAD4;;chr4:146402843..146402864,+!p3@SMAD1!0.60!6.60!SMAD1;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.86!ETV4;;chr6:10415276..10415341,-!p2@TFAP2A!0.60!3.82!TFAP2A;;chr17:46622440..46622477,-!p5@HOXB2!0.60!3.47!HOXB2;;chr4:2263809..2263854,-!p1@MXD4!0.59!138.16!MXD4;;chr6:21593973..21593988,+!p1@SOX4!0.59!127.40!SOX4;;chr2:85360499..85360598,+!p1@TCF7L1!0.59!19.44!TCF7L1;;chr15:96874145..96874166,+!p7@NR2F2!0.59!6.25!NR2F2;;chr15:96874012..96874042,+!p2@NR2F2!0.58!30.55!NR2F2;;chr12:66218904..66218913,+!p11@HMGA2!0.58!2.78!HMGA2;;chr7:27142290..27142310,-!p1@HOXA2!0.58!2.78!HOXA2;;chr7:35293685..35293718,-!p1@TBX20!0.58!2.78!TBX20;;chr11:65667846..65667868,-!p1@FOSL1!0.57!88.87!FOSL1;;chr12:66218183..66218209,+!p4@HMGA2!0.57!5.90!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.57!4.86!ETV4;;chr19:13136130..13136165,+!p6@NFIX!0.57!3.82!NFIX;;chr6:85473156..85473210,-!p2@TBX18!0.57!3.47!TBX18;;chr1:23885981..23886002,-!p1@ID3!0.56!575.21!ID3;;chr11:46299199..46299233,+!p1@CREB3L1!0.56!16.66!CREB3L1;;chr7:26191809..26191890,+!p1@NFE2L3!0.56!15.97!NFE2L3;;chr19:56152332..56152347,+!p4@ZNF580!0.56!6.94!ZNF580;;chr15:96876966..96877017,+!p12@NR2F2!0.56!4.17!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.55!14.58!HMGA2;;chr1:205601064..205601087,-!p4@ELK4!0.55!5.55!ELK4;;chr17:7590797..7590815,-!p1@TP53!0.54!137.47!TP53;;chr16:1429627..1429662,-!p2@UNKL!0.54!8.68!UNKL;;chr16:8962544..8962584,-!p2@CARHSP1!0.54!6.60!CARHSP1;;chr15:57211634..57211657,+!p5@TCF12!0.54!4.17!TCF12;;chr5:92918860..92918871,+!p10@NR2F1!0.54!2.78!NR2F1;;chr17:8027418..8027432,-!p1@HES7!0.54!2.43!HES7;;chr18:53177984..53178004,-!p17@TCF4!0.54!2.43!TCF4;;chr10:102891168..102891197,+!p3@TLX1!0.54!2.43!TLX1;;chr10:31288370..31288393,-!p3@ZNF438!0.54!2.43!ZNF438;;chr22:19746969..19746987,+!p2@TBX1!0.54!2.43!TBX1;;chr1:8938709..8938720,-!p3@ENO1!0.53!149.96!ENO1;;chr22:38598057..38598071,+!p3@MAFF!0.53!6.60!MAFF;;chr12:80084167..80084197,-!p5@PAWR!0.53!6.60!PAWR;;chr6:85474299..85474324,-!p1@TBX18!0.53!4.86!TBX18;;chr12:66218212..66218244,+!p5@HMGA2!0.53!3.82!HMGA2;;chr1:209979467..209979494,-!p1@IRF6!0.53!2.78!IRF6;;chr15:96873892..96873919,+!p4@NR2F2!0.52!29.16!NR2F2;;chr1:204042233..204042249,+!p1@SOX13!0.52!18.75!SOX13;;chr9:137217986..137218049,+!p3@RXRA!0.52!7.98!RXRA;;chr12:3068466..3068495,+!p3@TEAD4!0.52!5.90!TEAD4;;chr15:96873861..96873872,+!p9@NR2F2!0.52!5.55!NR2F2;;chr4:57522166..57522260,-!p2@HOPX!0.52!2.78!HOPX;;chr6:34204973..34204990,+!p4@HMGA1!0.51!39.23!HMGA1;;chr19:35455110..35455149,-!p1@ZNF792!0.50!4.86!ZNF792;;chrX:66763815..66763854,+!p2@AR!0.50!3.12!AR;;chr11:47236584..47236679,+!p1@DDB2!0.49!30.20!DDB2;;chr9:116638565..116638606,+!p1@ZNF618!0.49!11.46!ZNF618;;chr11:65667884..65667895,-!p2@FOSL1!0.49!10.41!FOSL1;;chr10:45496320..45496336,+!p3@ZNF22!0.49!2.08!ZNF22;;chr11:128562372..128562397,+!p4@FLI1!0.49!2.08!FLI1;;chr11:128563652..128563689,+!p3@FLI1!0.49!2.08!FLI1;;chr12:80084018..80084035,-!p17@PAWR!0.49!2.08!PAWR;;chr12:85673977..85674015,+!p1@ALX1!0.49!2.08!ALX1;;chr13:72441506..72441562,-!p3@DACH1!0.49!2.08!DACH1;;chr16:86600458..86600461,+!p3@FOXC2!0.49!2.08!FOXC2;;chr2:16080659..16080685,+!p1@MYCN!0.49!2.08!MYCN;;chr2:237077022..237077038,-!p1@GBX2!0.49!2.08!GBX2;;chr6:29648890..29648944,-!p1@ZFP57!0.49!2.08!ZFP57;;chr7:139741849..139741879,-!p12@PARP12!0.49!2.08!PARP12;;chr8:128749984..128750033,+!p4@MYC!0.48!9.37!MYC;;chr15:90544532..90544563,+!p1@ZNF710!0.48!4.86!ZNF710;;chr18:53254566..53254567,-!p8@TCF4!0.48!3.82!TCF4;;chr22:41697484..41697496,+!p3@ZC3H7B!0.48!2.78!ZC3H7B;;chr17:46675420..46675465,-!p3@HOXB6!0.48!2.43!HOXB6;;chr17:3571863..3571881,-!p1@TAX1BP3!0.47!193.01!TAX1BP3;;chr15:96873984..96873999,+!p3@NR2F2!0.47!19.09!NR2F2;;chr19:19516507..19516539,+!p7@GATAD2A!0.47!7.29!GATAD2A;;chr1:204042723..204042784,+!p3@SOX13!0.47!3.82!SOX13;;chr9:35732514..35732530,+!p5@CREB3!0.47!3.12!CREB3;;chr8:106330656..106330684,+!p1@ZFPM2!0.46!6.25!ZFPM2;;chr12:3068501..3068515,+!p4@TEAD4!0.46!3.82!TEAD4;;chr2:239756739..239756755,+!p2@TWIST2!0.46!3.82!TWIST2;;chr12:66218152..66218174,+!p10@HMGA2!0.46!2.08!HMGA2;;chr8:128748308..128748324,+!p2@MYC!0.45!71.16!MYC;;chr11:62369229..62369289,-!p2@MTA2!0.45!37.49!MTA2;;chr1:151032860..151032918,+!p1@MLLT11!0.45!29.85!MLLT11;;chr19:1863591..1863611,-!p2@KLF16!0.45!24.30!KLF16;;chr4:146402997..146403020,+!p1@SMAD1!0.45!17.70!SMAD1;;chr14:74226961..74227020,-!p1@C14orf43!0.45!16.32!C14orf43;;chr15:96874244..96874259,+!p5@NR2F2!0.45!5.55!NR2F2;;chr7:100076765..100076861,-!p1@TSC22D4!0.44!86.79!TSC22D4;;chr20:48599506..48599526,+!p1@SNAI1!0.44!15.62!SNAI1;;chr14:73360799..73360817,-!p1@DPF3!0.44!7.98!DPF3;;chr9:14314106..14314119,-!p5@NFIB!0.44!3.82!NFIB;;chr6:10412576..10412599,-!p5@TFAP2A!0.44!1.74!TFAP2A;;chr7:149470826..149470844,-!p6@ZNF467!0.44!1.74!ZNF467;;chr15:83953373..83953386,-!p2@BNC1!0.44!1.74!BNC1;;chr15:96869206..96869220,+!p21@NR2F2!0.44!1.74!NR2F2;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| |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.48!396.43!SOX18;;chr8:55370487..55370503,+!p1@SOX17!2.19!152.39!SOX17;;chr8:10588010..10588030,-!p1@SOX7!2.11!126.71!SOX7;;chr21:39870339..39870443,-!p1@ERG!2.08!118.37!ERG;;chr17:6926362..6926377,+!p1@BCL6B!1.95!88.52!BCL6B;;chr18:53068911..53068935,-!p4@TCF4!1.81!71.51!TCF4;;chr12:96588368..96588394,+!p3@ELK3!1.70!127.40!ELK3;;chr19:13213511..13213545,-!p2@LYL1!1.65!47.56!LYL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.59!37.84!ZBED1;;chr1:6479968..6479986,-!p1@HES2!1.49!29.85!HES2;;chr6:34204921..34204939,+!p3@HMGA1!1.40!694.98!HMGA1;;chr22:19748231..19748317,+!p1@TBX1!1.38!23.26!TBX1;;chr10:94449703..94449718,+!p1@HHEX!1.26!65.26!HHEX;;chr16:86600426..86600441,+!p1@FOXC2!1.17!34.02!FOXC2;;chr19:13213662..13213686,-!p1@LYL1!1.17!20.48!LYL1;;chr19:13213399..13213414,-!p6@LYL1!1.17!13.89!LYL1;;chr3:169381420..169381535,-!p1@MECOM!1.16!15.62!MECOM;;chr17:46655672..46655697,-!p3@HOXB4!1.15!13.19!HOXB4;;chr1:47695003..47695042,-!p2@TAL1!1.04!10.07!TAL1;;chr3:128206762..128206781,-!p2@GATA2!1.02!60.40!GATA2;;chr4:174451370..174451387,-!p1@HAND2!1.02!9.37!HAND2;;chr22:38597987..38598021,+!p2@MAFF!1.00!56.24!MAFF;;chr17:41622925..41622976,-!p3@ETV4!1.00!13.54!ETV4;;chr4:174450089..174450153,-!p2@HAND2!1.00!9.03!HAND2;;chr17:46655704..46655718,-!p2@HOXB4!0.98!12.84!HOXB4;;chr9:14314131..14314147,-!p2@NFIB!0.96!46.52!NFIB;;chr18:22932080..22932170,-!p1@ZNF521!0.95!34.71!ZNF521;;chr2:46524537..46524553,+!p1@EPAS1!0.94!780.37!EPAS1;;chr18:19749541..19749557,+!p1@GATA6!0.92!23.95!GATA6;;chr18:53068982..53068993,-!p20@TCF4!0.92!7.29!TCF4;;chr20:42543441..42543497,+!p1@TOX2!0.91!33.67!TOX2;;chr17:6926381..6926392,+!p2@BCL6B!0.90!6.94!BCL6B;;chr11:65429891..65429915,-!p7@RELA!0.86!6.25!RELA;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.77!ETV4;;chr6:28321971..28321995,-!p1@ZNF323!0.84!5.90!ZNF323;;chr14:74256787..74256858,-!p6@C14orf43!0.84!5.90!C14orf43;;chr12:124873852..124873881,-!p3@NCOR2!0.83!36.80!NCOR2;;chr13:72441315..72441454,-!p1@DACH1!0.83!12.15!DACH1;;chr20:42543506..42543549,+!p2@TOX2!0.82!14.23!TOX2;;chr19:53496768..53496799,-!p1@ZNF702P!0.82!9.03!ZNF702P;;chr6:34204672..34204692,+!p1@HMGA1!0.81!663.04!HMGA1;;chr3:168864315..168864339,-!p2@MECOM!0.81!9.37!MECOM;;chr19:49865646..49865718,-!p1@TEAD2!0.80!49.64!TEAD2;;chr10:8096631..8096660,+!p1@GATA3!0.80!6.60!GATA3;;chr20:42295745..42295765,+!p1@MYBL2!0.79!91.99!MYBL2;;chr17:1958388..1958404,+!p1@HIC1!0.79!36.10!HIC1;;chr10:94449675..94449694,+!p2@HHEX!0.79!14.93!HHEX;;chr10:8096772..8096787,+!p2@GATA3!0.79!6.25!GATA3;;chr19:13213555..13213568,-!p5@LYL1!0.79!5.21!LYL1;;chr9:14314566..14314618,-!p1@NFIB!0.78!65.96!NFIB;;chr18:53257001..53257015,-!p5@TCF4!0.78!9.03!TCF4;;chr5:92918919..92918942,+!p1@NR2F1!0.77!23.61!NR2F1;;chr19:1652555..1652568,-!p2@TCF3!0.77!21.87!TCF3;;chr11:65430554..65430579,-!p3@RELA!0.77!13.54!RELA;;chr20:6748325..6748352,+!p1@BMP2!0.77!7.29!BMP2;;chr19:46801639..46801699,+!p1@HIF3A!0.77!4.86!HIF3A;;chr8:11561684..11561751,+!p1@GATA4!0.77!4.86!GATA4;;chr8:55370720..55370733,+!p2@SOX17!0.77!4.86!SOX17;;chr19:13213465..13213478,-!p7@LYL1!0.77!4.86!LYL1;;chr10:31288398..31288455,-!p2@ZNF438!0.75!5.55!ZNF438;;chr20:50159198..50159299,-!p1@NFATC2!0.74!6.94!NFATC2;;chr9:16705069..16705086,-!p3@BNC2!0.74!4.51!BNC2;;chr12:66218255..66218304,+!p3@HMGA2!0.73!12.84!HMGA2;;chr9:14083467..14083483,-!p4@NFIB!0.72!11.46!NFIB;;chr15:96873921..96873946,+!p1@NR2F2!0.71!132.61!NR2F2;;chr11:128563948..128564003,+!p1@FLI1!0.71!55.89!FLI1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.71!40.96!PPP1R13L;;chr11:65687362..65687436,+!p3@DRAP1!0.71!20.83!DRAP1;;chr18:53068940..53068951,-!p21@TCF4!0.71!4.17!TCF4;;chr7:139741594..139741615,-!p5@PARP12!0.71!4.17!PARP12;;chr3:178789522..178789564,-!p2@ZMAT3!0.69!32.63!ZMAT3;;chr4:146403912..146403972,+!p5@SMAD1!0.69!5.21!SMAD1;;chr17:41622834..41622883,-!p6@ETV4!0.69!4.86!ETV4;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.51!BNC1;;chr7:149470641..149470694,-!p1@ZNF467!0.68!19.44!ZNF467;;chr6:126070769..126070801,+!p1@HEY2!0.68!4.51!HEY2;;chr13:41240737..41240787,-!p1@FOXO1!0.66!49.64!FOXO1;;chr19:49864746..49864780,-!p2@TEAD2!0.66!5.21!TEAD2;;chr3:170076314..170076334,+!p2@SKIL!0.66!4.86!SKIL;;chr12:124873357..124873401,-!p1@NCOR2!0.65!47.56!NCOR2;;chr20:42295713..42295738,+!p2@MYBL2!0.65!23.95!MYBL2;;chr6:10412600..10412637,-!p1@TFAP2A!0.65!6.25!TFAP2A;;chr18:53068893..53068902,-!p28@TCF4!0.65!3.47!TCF4;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!5.90!ZBTB16;;chr5:92918894..92918912,+!p2@NR2F1!0.63!12.15!NR2F1;;chrX:66763856..66763896,+!p1@AR!0.62!4.86!AR;;chr7:115670804..115670825,-!p1@TFEC!0.62!3.12!TFEC;;chr19:13136057..13136085,+!p11@NFIX!0.62!3.12!NFIX;;chr4:146404119..146404158,+!p9@SMAD1!0.62!3.12!SMAD1;;chr4:146404160..146404186,+!p13@SMAD1!0.62!3.12!SMAD1;;chr1:156470494..156470505,-!p3@MEF2D!0.61!4.86!MEF2D;;chr6:21597765..21597779,+!p2@SOX4!0.60!29.16!SOX4;;chr6:130339710..130339745,+!p1@L3MBTL3!0.60!28.47!L3MBTL3;;chr13:41240717..41240735,-!p2@FOXO1!0.60!24.30!FOXO1;;chr1:8763440..8763460,-!p2@RERE!0.60!18.05!RERE;;chr12:3069037..3069119,+!p2@TEAD4!0.60!12.15!TEAD4;;chr4:146402843..146402864,+!p3@SMAD1!0.60!6.60!SMAD1;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.86!ETV4;;chr6:10415276..10415341,-!p2@TFAP2A!0.60!3.82!TFAP2A;;chr17:46622440..46622477,-!p5@HOXB2!0.60!3.47!HOXB2;;chr4:2263809..2263854,-!p1@MXD4!0.59!138.16!MXD4;;chr6:21593973..21593988,+!p1@SOX4!0.59!127.40!SOX4;;chr2:85360499..85360598,+!p1@TCF7L1!0.59!19.44!TCF7L1;;chr15:96874145..96874166,+!p7@NR2F2!0.59!6.25!NR2F2;;chr15:96874012..96874042,+!p2@NR2F2!0.58!30.55!NR2F2;;chr12:66218904..66218913,+!p11@HMGA2!0.58!2.78!HMGA2;;chr7:27142290..27142310,-!p1@HOXA2!0.58!2.78!HOXA2;;chr7:35293685..35293718,-!p1@TBX20!0.58!2.78!TBX20;;chr11:65667846..65667868,-!p1@FOSL1!0.57!88.87!FOSL1;;chr12:66218183..66218209,+!p4@HMGA2!0.57!5.90!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.57!4.86!ETV4;;chr19:13136130..13136165,+!p6@NFIX!0.57!3.82!NFIX;;chr6:85473156..85473210,-!p2@TBX18!0.57!3.47!TBX18;;chr1:23885981..23886002,-!p1@ID3!0.56!575.21!ID3;;chr11:46299199..46299233,+!p1@CREB3L1!0.56!16.66!CREB3L1;;chr7:26191809..26191890,+!p1@NFE2L3!0.56!15.97!NFE2L3;;chr19:56152332..56152347,+!p4@ZNF580!0.56!6.94!ZNF580;;chr15:96876966..96877017,+!p12@NR2F2!0.56!4.17!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.55!14.58!HMGA2;;chr1:205601064..205601087,-!p4@ELK4!0.55!5.55!ELK4;;chr17:7590797..7590815,-!p1@TP53!0.54!137.47!TP53;;chr16:1429627..1429662,-!p2@UNKL!0.54!8.68!UNKL;;chr16:8962544..8962584,-!p2@CARHSP1!0.54!6.60!CARHSP1;;chr15:57211634..57211657,+!p5@TCF12!0.54!4.17!TCF12;;chr5:92918860..92918871,+!p10@NR2F1!0.54!2.78!NR2F1;;chr17:8027418..8027432,-!p1@HES7!0.54!2.43!HES7;;chr18:53177984..53178004,-!p17@TCF4!0.54!2.43!TCF4;;chr10:102891168..102891197,+!p3@TLX1!0.54!2.43!TLX1;;chr10:31288370..31288393,-!p3@ZNF438!0.54!2.43!ZNF438;;chr22:19746969..19746987,+!p2@TBX1!0.54!2.43!TBX1;;chr1:8938709..8938720,-!p3@ENO1!0.53!149.96!ENO1;;chr22:38598057..38598071,+!p3@MAFF!0.53!6.60!MAFF;;chr12:80084167..80084197,-!p5@PAWR!0.53!6.60!PAWR;;chr6:85474299..85474324,-!p1@TBX18!0.53!4.86!TBX18;;chr12:66218212..66218244,+!p5@HMGA2!0.53!3.82!HMGA2;;chr1:209979467..209979494,-!p1@IRF6!0.53!2.78!IRF6;;chr15:96873892..96873919,+!p4@NR2F2!0.52!29.16!NR2F2;;chr1:204042233..204042249,+!p1@SOX13!0.52!18.75!SOX13;;chr9:137217986..137218049,+!p3@RXRA!0.52!7.98!RXRA;;chr12:3068466..3068495,+!p3@TEAD4!0.52!5.90!TEAD4;;chr15:96873861..96873872,+!p9@NR2F2!0.52!5.55!NR2F2;;chr4:57522166..57522260,-!p2@HOPX!0.52!2.78!HOPX;;chr6:34204973..34204990,+!p4@HMGA1!0.51!39.23!HMGA1;;chr19:35455110..35455149,-!p1@ZNF792!0.50!4.86!ZNF792;;chrX:66763815..66763854,+!p2@AR!0.50!3.12!AR;;chr11:47236584..47236679,+!p1@DDB2!0.49!30.20!DDB2;;chr9:116638565..116638606,+!p1@ZNF618!0.49!11.46!ZNF618;;chr11:65667884..65667895,-!p2@FOSL1!0.49!10.41!FOSL1;;chr10:45496320..45496336,+!p3@ZNF22!0.49!2.08!ZNF22;;chr11:128562372..128562397,+!p4@FLI1!0.49!2.08!FLI1;;chr11:128563652..128563689,+!p3@FLI1!0.49!2.08!FLI1;;chr12:80084018..80084035,-!p17@PAWR!0.49!2.08!PAWR;;chr12:85673977..85674015,+!p1@ALX1!0.49!2.08!ALX1;;chr13:72441506..72441562,-!p3@DACH1!0.49!2.08!DACH1;;chr16:86600458..86600461,+!p3@FOXC2!0.49!2.08!FOXC2;;chr2:16080659..16080685,+!p1@MYCN!0.49!2.08!MYCN;;chr2:237077022..237077038,-!p1@GBX2!0.49!2.08!GBX2;;chr6:29648890..29648944,-!p1@ZFP57!0.49!2.08!ZFP57;;chr7:139741849..139741879,-!p12@PARP12!0.49!2.08!PARP12;;chr8:128749984..128750033,+!p4@MYC!0.48!9.37!MYC;;chr15:90544532..90544563,+!p1@ZNF710!0.48!4.86!ZNF710;;chr18:53254566..53254567,-!p8@TCF4!0.48!3.82!TCF4;;chr22:41697484..41697496,+!p3@ZC3H7B!0.48!2.78!ZC3H7B;;chr17:46675420..46675465,-!p3@HOXB6!0.48!2.43!HOXB6;;chr17:3571863..3571881,-!p1@TAX1BP3!0.47!193.01!TAX1BP3;;chr15:96873984..96873999,+!p3@NR2F2!0.47!19.09!NR2F2;;chr19:19516507..19516539,+!p7@GATAD2A!0.47!7.29!GATAD2A;;chr1:204042723..204042784,+!p3@SOX13!0.47!3.82!SOX13;;chr9:35732514..35732530,+!p5@CREB3!0.47!3.12!CREB3;;chr8:106330656..106330684,+!p1@ZFPM2!0.46!6.25!ZFPM2;;chr12:3068501..3068515,+!p4@TEAD4!0.46!3.82!TEAD4;;chr2:239756739..239756755,+!p2@TWIST2!0.46!3.82!TWIST2;;chr12:66218152..66218174,+!p10@HMGA2!0.46!2.08!HMGA2;;chr8:128748308..128748324,+!p2@MYC!0.45!71.16!MYC;;chr11:62369229..62369289,-!p2@MTA2!0.45!37.49!MTA2;;chr1:151032860..151032918,+!p1@MLLT11!0.45!29.85!MLLT11;;chr19:1863591..1863611,-!p2@KLF16!0.45!24.30!KLF16;;chr4:146402997..146403020,+!p1@SMAD1!0.45!17.70!SMAD1;;chr14:74226961..74227020,-!p1@C14orf43!0.45!16.32!C14orf43;;chr15:96874244..96874259,+!p5@NR2F2!0.45!5.55!NR2F2;;chr7:100076765..100076861,-!p1@TSC22D4!0.44!86.79!TSC22D4;;chr20:48599506..48599526,+!p1@SNAI1!0.44!15.62!SNAI1;;chr14:73360799..73360817,-!p1@DPF3!0.44!7.98!DPF3;;chr9:14314106..14314119,-!p5@NFIB!0.44!3.82!NFIB;;chr6:10412576..10412599,-!p5@TFAP2A!0.44!1.74!TFAP2A;;chr7:149470826..149470844,-!p6@ZNF467!0.44!1.74!ZNF467;;chr15:83953373..83953386,-!p2@BNC1!0.44!1.74!BNC1;;chr15:96869206..96869220,+!p21@NR2F2!0.44!1.74!NR2F2;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002544;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000413;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0002546,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11340-117F8 | |id=FF:11340-117F8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000048 | ||
|is_obsolete= | |||
|library_id=CNhs11375 | |||
|library_id_phase_based=2:CNhs11375 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11340 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GTGGCC.11340 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11340 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GTGGCC.11340 | |||
|name=Endothelial Cells - Aortic, donor2 | |name=Endothelial Cells - Aortic, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11375,LSID771,release012,COMPLETED | |profile_hcage=CNhs11375,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA304-R10a | |rna_catalog_number=CA304-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117F8 | |rna_tube_id=117F8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.GTGGCC | |||
|sample_age=56 | |sample_age=56 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=SOX{8,9,10}:1.69279531628;TLX1..3_NFIC{dimer}:1.39141467412;AR:1.19030531435;NFATC1..3:1.11344969271;RXR{A,B,G}:1.02087864582;GATA6:1.01743903575;SOX2:0.932125770505;TFAP4:0.895655390756;ZNF148:0.892224444632;ADNP_IRX_SIX_ZHX:0.856652597849;NANOG:0.787656806062;PAX1,9:0.761452882917;ETS1,2:0.703134787994;IKZF1:0.694487067444;XCPE1{core}:0.68861940087;HIC1:0.671617058513;CRX:0.670753412663;PAX6:0.664084243997;GTF2A1,2:0.662655834749;FOXL1:0.631554001346;LHX3,4:0.623873200104;TFAP2{A,C}:0.620975490178;RORA:0.620435029429;TP53:0.619188253609;SOX5:0.618506874454;PITX1..3:0.606411600992;LEF1_TCF7_TCF7L1,2:0.584835878759;PAX8:0.574395152731;HBP1_HMGB_SSRP1_UBTF:0.533447529986;HES1:0.518568260364;ZNF423:0.489599356842;ELF1,2,4:0.464665290633;SPIB:0.464213389273;CDC5L:0.42081218655;MTE{core}:0.396144070812;GATA4:0.393692750436;SOX17:0.377094024699;TFDP1:0.3732342004;HAND1,2:0.37194856061;TFAP2B:0.342235972808;POU3F1..4:0.337968038444;TEAD1:0.332246529646;NR3C1:0.33217658846;ZNF238:0.28887039044;GFI1B:0.26507456734;BACH2:0.261531520175;FOXA2:0.254155238188;NFE2:0.246893251982;PBX1:0.245929602716;ZFP161:0.225483009758;FOS_FOS{B,L1}_JUN{B,D}:0.212811585426;SP1:0.212216236345;NKX2-2,8:0.212053630306;GFI1:0.201022416102;bHLH_family:0.200845669071;GZF1:0.19829000066;PAX5:0.197599843282;IKZF2:0.168763918891;FOXM1:0.150902197182;HOX{A5,B5}:0.142713503223;SMAD1..7,9:0.142180423682;REST:0.135613206852;NR5A1,2:0.123335916325;ARID5B:0.117385982903;MYB:0.114851494132;FOXD3:0.111456633516;LMO2:0.106290598127;GLI1..3:0.105997568107;ZIC1..3:0.104128106432;ZBTB6:0.100459051275;FOX{I1,J2}:0.0808541160902;HNF4A_NR2F1,2:0.0797266300367;SRF:0.0778857160652;FOSL2:0.0719082886326;GTF2I:0.0708398814189;ONECUT1,2:0.0690297064401;E2F1..5:0.0685574063877;NFE2L1:0.0529008742895;SPZ1:0.0315938054164;NFE2L2:0.0287949094741;PPARG:0.0227990544231;MAZ:0.00673333277672;EBF1:0.00495866154014;NHLH1,2:0.00482662493968;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.000666716855066;TFCP2:-0.0141515374882;MYOD1:-0.0194155712555;NKX3-2:-0.050825272979;MED-1{core}:-0.0599606880206;TBP:-0.080558556878;EGR1..3:-0.0879494971728;STAT5{A,B}:-0.0929854753876;SPI1:-0.0966848889348;NFY{A,B,C}:-0.114813025675;MEF2{A,B,C,D}:-0.122912667097;ESRRA:-0.123206630762;HOXA9_MEIS1:-0.145684113301;UFEwm:-0.148734082903;ZNF143:-0.149268165301;POU2F1..3:-0.15185078081;RREB1:-0.160704796784;POU1F1:-0.181016636951;STAT2,4,6:-0.182399908694;HNF1A:-0.184485349942;OCT4_SOX2{dimer}:-0.187843218657;KLF4:-0.210161065151;HMGA1,2:-0.21123103789;EN1,2:-0.215812599108;ALX1:-0.242714036305;PAX4:-0.246785023702;MTF1:-0.254854317662;T:-0.256406754769;PRRX1,2:-0.281790691094;PATZ1:-0.296003494928;PAX2:-0.310560955968;DBP:-0.342614488095;NFKB1_REL_RELA:-0.343928791114;PRDM1:-0.34436193759;JUN:-0.351751667073;MYBL2:-0.360730873613;MZF1:-0.367270546361;ATF2:-0.387407381223;HOX{A6,A7,B6,B7}:-0.402602797296;FOX{D1,D2}:-0.406815310575;SNAI1..3:-0.413221491359;PAX3,7:-0.415075265175;HLF:-0.421273475516;RFX1:-0.42768989222;CUX2:-0.428997196224;NRF1:-0.429642784346;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.430292409885;NKX2-3_NKX2-5:-0.434627215736;TAL1_TCF{3,4,12}:-0.436132655589;GCM1,2:-0.46977314743;TOPORS:-0.471698279486;HMX1:-0.476674676851;BPTF:-0.479243273477;RUNX1..3:-0.489689855645;EP300:-0.490435088973;TLX2:-0.497238023883;YY1:-0.513165120512;POU6F1:-0.516496881355;POU5F1:-0.517990191394;NR1H4:-0.532517143264;FOXO1,3,4:-0.534763010351;VSX1,2:-0.547942746429;RBPJ:-0.557648369297;EVI1:-0.576137635906;CEBPA,B_DDIT3:-0.581992417276;DMAP1_NCOR{1,2}_SMARC:-0.582353980005;FOXP1:-0.5846424957;ATF6:-0.618074204233;IRF1,2:-0.629101575952;TGIF1:-0.629191732671;FOXQ1:-0.631465168145;FOXP3:-0.632607328763;MYFfamily:-0.650886238975;IRF7:-0.654065755068;NFIL3:-0.655398492122;ZEB1:-0.676553876769;NANOG{mouse}:-0.689682481319;FOX{F1,F2,J1}:-0.690968102426;RXRA_VDR{dimer}:-0.727395762059;BREu{core}:-0.73478178678;AHR_ARNT_ARNT2:-0.73555403573;ALX4:-0.743363643789;ZBTB16:-0.74474322496;XBP1:-0.790579606292;TEF:-0.798332315679;HSF1,2:-0.805458920313;ELK1,4_GABP{A,B1}:-0.850577476236;STAT1,3:-0.860085707526;HIF1A:-0.876512825325;FOXN1:-0.929450154423;ESR1:-0.939493726614;AIRE:-0.973803122586;NFIX:-0.980518077377;SREBF1,2:-1.01908737443;ZNF384:-1.02199317113;NKX6-1,2:-1.02954706463;ATF5_CREB3:-1.07919970717;TBX4,5:-1.11633565775;PDX1:-1.12339058341;NR6A1:-1.13591060547;RFX2..5_RFXANK_RFXAP:-1.13615724112;CDX1,2,4:-1.14662843318;ATF4:-1.16740772926;NKX3-1:-1.17148424149;MAFB:-1.17609766675;NKX2-1,4:-1.1954717908;CREB1:-1.20898202503;HOX{A4,D4}:-1.40712173386 | |top_motifs=SOX{8,9,10}:1.69279531628;TLX1..3_NFIC{dimer}:1.39141467412;AR:1.19030531435;NFATC1..3:1.11344969271;RXR{A,B,G}:1.02087864582;GATA6:1.01743903575;SOX2:0.932125770505;TFAP4:0.895655390756;ZNF148:0.892224444632;ADNP_IRX_SIX_ZHX:0.856652597849;NANOG:0.787656806062;PAX1,9:0.761452882917;ETS1,2:0.703134787994;IKZF1:0.694487067444;XCPE1{core}:0.68861940087;HIC1:0.671617058513;CRX:0.670753412663;PAX6:0.664084243997;GTF2A1,2:0.662655834749;FOXL1:0.631554001346;LHX3,4:0.623873200104;TFAP2{A,C}:0.620975490178;RORA:0.620435029429;TP53:0.619188253609;SOX5:0.618506874454;PITX1..3:0.606411600992;LEF1_TCF7_TCF7L1,2:0.584835878759;PAX8:0.574395152731;HBP1_HMGB_SSRP1_UBTF:0.533447529986;HES1:0.518568260364;ZNF423:0.489599356842;ELF1,2,4:0.464665290633;SPIB:0.464213389273;CDC5L:0.42081218655;MTE{core}:0.396144070812;GATA4:0.393692750436;SOX17:0.377094024699;TFDP1:0.3732342004;HAND1,2:0.37194856061;TFAP2B:0.342235972808;POU3F1..4:0.337968038444;TEAD1:0.332246529646;NR3C1:0.33217658846;ZNF238:0.28887039044;GFI1B:0.26507456734;BACH2:0.261531520175;FOXA2:0.254155238188;NFE2:0.246893251982;PBX1:0.245929602716;ZFP161:0.225483009758;FOS_FOS{B,L1}_JUN{B,D}:0.212811585426;SP1:0.212216236345;NKX2-2,8:0.212053630306;GFI1:0.201022416102;bHLH_family:0.200845669071;GZF1:0.19829000066;PAX5:0.197599843282;IKZF2:0.168763918891;FOXM1:0.150902197182;HOX{A5,B5}:0.142713503223;SMAD1..7,9:0.142180423682;REST:0.135613206852;NR5A1,2:0.123335916325;ARID5B:0.117385982903;MYB:0.114851494132;FOXD3:0.111456633516;LMO2:0.106290598127;GLI1..3:0.105997568107;ZIC1..3:0.104128106432;ZBTB6:0.100459051275;FOX{I1,J2}:0.0808541160902;HNF4A_NR2F1,2:0.0797266300367;SRF:0.0778857160652;FOSL2:0.0719082886326;GTF2I:0.0708398814189;ONECUT1,2:0.0690297064401;E2F1..5:0.0685574063877;NFE2L1:0.0529008742895;SPZ1:0.0315938054164;NFE2L2:0.0287949094741;PPARG:0.0227990544231;MAZ:0.00673333277672;EBF1:0.00495866154014;NHLH1,2:0.00482662493968;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.000666716855066;TFCP2:-0.0141515374882;MYOD1:-0.0194155712555;NKX3-2:-0.050825272979;MED-1{core}:-0.0599606880206;TBP:-0.080558556878;EGR1..3:-0.0879494971728;STAT5{A,B}:-0.0929854753876;SPI1:-0.0966848889348;NFY{A,B,C}:-0.114813025675;MEF2{A,B,C,D}:-0.122912667097;ESRRA:-0.123206630762;HOXA9_MEIS1:-0.145684113301;UFEwm:-0.148734082903;ZNF143:-0.149268165301;POU2F1..3:-0.15185078081;RREB1:-0.160704796784;POU1F1:-0.181016636951;STAT2,4,6:-0.182399908694;HNF1A:-0.184485349942;OCT4_SOX2{dimer}:-0.187843218657;KLF4:-0.210161065151;HMGA1,2:-0.21123103789;EN1,2:-0.215812599108;ALX1:-0.242714036305;PAX4:-0.246785023702;MTF1:-0.254854317662;T:-0.256406754769;PRRX1,2:-0.281790691094;PATZ1:-0.296003494928;PAX2:-0.310560955968;DBP:-0.342614488095;NFKB1_REL_RELA:-0.343928791114;PRDM1:-0.34436193759;JUN:-0.351751667073;MYBL2:-0.360730873613;MZF1:-0.367270546361;ATF2:-0.387407381223;HOX{A6,A7,B6,B7}:-0.402602797296;FOX{D1,D2}:-0.406815310575;SNAI1..3:-0.413221491359;PAX3,7:-0.415075265175;HLF:-0.421273475516;RFX1:-0.42768989222;CUX2:-0.428997196224;NRF1:-0.429642784346;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.430292409885;NKX2-3_NKX2-5:-0.434627215736;TAL1_TCF{3,4,12}:-0.436132655589;GCM1,2:-0.46977314743;TOPORS:-0.471698279486;HMX1:-0.476674676851;BPTF:-0.479243273477;RUNX1..3:-0.489689855645;EP300:-0.490435088973;TLX2:-0.497238023883;YY1:-0.513165120512;POU6F1:-0.516496881355;POU5F1:-0.517990191394;NR1H4:-0.532517143264;FOXO1,3,4:-0.534763010351;VSX1,2:-0.547942746429;RBPJ:-0.557648369297;EVI1:-0.576137635906;CEBPA,B_DDIT3:-0.581992417276;DMAP1_NCOR{1,2}_SMARC:-0.582353980005;FOXP1:-0.5846424957;ATF6:-0.618074204233;IRF1,2:-0.629101575952;TGIF1:-0.629191732671;FOXQ1:-0.631465168145;FOXP3:-0.632607328763;MYFfamily:-0.650886238975;IRF7:-0.654065755068;NFIL3:-0.655398492122;ZEB1:-0.676553876769;NANOG{mouse}:-0.689682481319;FOX{F1,F2,J1}:-0.690968102426;RXRA_VDR{dimer}:-0.727395762059;BREu{core}:-0.73478178678;AHR_ARNT_ARNT2:-0.73555403573;ALX4:-0.743363643789;ZBTB16:-0.74474322496;XBP1:-0.790579606292;TEF:-0.798332315679;HSF1,2:-0.805458920313;ELK1,4_GABP{A,B1}:-0.850577476236;STAT1,3:-0.860085707526;HIF1A:-0.876512825325;FOXN1:-0.929450154423;ESR1:-0.939493726614;AIRE:-0.973803122586;NFIX:-0.980518077377;SREBF1,2:-1.01908737443;ZNF384:-1.02199317113;NKX6-1,2:-1.02954706463;ATF5_CREB3:-1.07919970717;TBX4,5:-1.11633565775;PDX1:-1.12339058341;NR6A1:-1.13591060547;RFX2..5_RFXANK_RFXAP:-1.13615724112;CDX1,2,4:-1.14662843318;ATF4:-1.16740772926;NKX3-1:-1.17148424149;MAFB:-1.17609766675;NKX2-1,4:-1.1954717908;CREB1:-1.20898202503;HOX{A4,D4}:-1.40712173386 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11340-117F8;search_select_hide=table117:FF:11340-117F8 | |||
}} | }} | ||
Latest revision as of 17:53, 4 June 2020
| Name: | Endothelial Cells - Aortic, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11375 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11375
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11375
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.503 |
| 10 | 10 | 0.226 |
| 100 | 100 | 0.946 |
| 101 | 101 | 0.537 |
| 102 | 102 | 0.82 |
| 103 | 103 | 0.695 |
| 104 | 104 | 0.889 |
| 105 | 105 | 0.633 |
| 106 | 106 | 0.0356 |
| 107 | 107 | 0.00135 |
| 108 | 108 | 0.605 |
| 109 | 109 | 0.144 |
| 11 | 11 | 0.118 |
| 110 | 110 | 0.0315 |
| 111 | 111 | 0.0812 |
| 112 | 112 | 0.672 |
| 113 | 113 | 0.708 |
| 114 | 114 | 0.136 |
| 115 | 115 | 0.822 |
| 116 | 116 | 0.908 |
| 117 | 117 | 0.804 |
| 118 | 118 | 0.521 |
| 119 | 119 | 0.38 |
| 12 | 12 | 0.629 |
| 120 | 120 | 0.102 |
| 121 | 121 | 0.665 |
| 122 | 122 | 0.781 |
| 123 | 123 | 0.501 |
| 124 | 124 | 0.494 |
| 125 | 125 | 0.856 |
| 126 | 126 | 0.64 |
| 127 | 127 | 0.991 |
| 128 | 128 | 0.331 |
| 129 | 129 | 0.378 |
| 13 | 13 | 0.86 |
| 130 | 130 | 0.876 |
| 131 | 131 | 0.599 |
| 132 | 132 | 0.297 |
| 133 | 133 | 0.419 |
| 134 | 134 | 0.575 |
| 135 | 135 | 0.262 |
| 136 | 136 | 0.33 |
| 137 | 137 | 0.252 |
| 138 | 138 | 0.739 |
| 139 | 139 | 0.874 |
| 14 | 14 | 0.987 |
| 140 | 140 | 0.847 |
| 141 | 141 | 0.444 |
| 142 | 142 | 0.411 |
| 143 | 143 | 0.128 |
| 144 | 144 | 0.482 |
| 145 | 145 | 0.0333 |
| 146 | 146 | 0.285 |
| 147 | 147 | 0.157 |
| 148 | 148 | 0.404 |
| 149 | 149 | 0.0174 |
| 15 | 15 | 0.656 |
| 150 | 150 | 0.184 |
| 151 | 151 | 0.405 |
| 152 | 152 | 0.0159 |
| 153 | 153 | 0.265 |
| 154 | 154 | 0.618 |
| 155 | 155 | 0.676 |
| 156 | 156 | 0.0699 |
| 157 | 157 | 0.705 |
| 158 | 158 | 0.173 |
| 159 | 159 | 0.608 |
| 16 | 16 | 0.832 |
| 160 | 160 | 0.0118 |
| 161 | 161 | 0.268 |
| 162 | 162 | 0.511 |
| 163 | 163 | 0.875 |
| 164 | 164 | 0.638 |
| 165 | 165 | 0.426 |
| 166 | 166 | 0.489 |
| 167 | 167 | 0.0302 |
| 168 | 168 | 0.263 |
| 169 | 169 | 0.0513 |
| 17 | 17 | 0.119 |
| 18 | 18 | 0.8 |
| 19 | 19 | 0.114 |
| 2 | 2 | 0.459 |
| 20 | 20 | 0.926 |
| 21 | 21 | 0.954 |
| 22 | 22 | 0.216 |
| 23 | 23 | 0.0613 |
| 24 | 24 | 0.446 |
| 25 | 25 | 0.504 |
| 26 | 26 | 0.732 |
| 27 | 27 | 0.454 |
| 28 | 28 | 0.161 |
| 29 | 29 | 0.539 |
| 3 | 3 | 0.665 |
| 30 | 30 | 0.793 |
| 31 | 31 | 0.949 |
| 32 | 32 | 0.609 |
| 33 | 33 | 0.354 |
| 34 | 34 | 0.114 |
| 35 | 35 | 0.329 |
| 36 | 36 | 0.262 |
| 37 | 37 | 0.505 |
| 38 | 38 | 0.106 |
| 39 | 39 | 0.199 |
| 4 | 4 | 0.606 |
| 40 | 40 | 0.00484 |
| 41 | 41 | 0.0501 |
| 42 | 42 | 0.365 |
| 43 | 43 | 0.575 |
| 44 | 44 | 0.635 |
| 45 | 45 | 0.213 |
| 46 | 46 | 0.207 |
| 47 | 47 | 0.371 |
| 48 | 48 | 0.047 |
| 49 | 49 | 0.732 |
| 5 | 5 | 0.726 |
| 50 | 50 | 0.587 |
| 51 | 51 | 0.574 |
| 52 | 52 | 0.477 |
| 53 | 53 | 0.878 |
| 54 | 54 | 0.489 |
| 55 | 55 | 0.78 |
| 56 | 56 | 0.492 |
| 57 | 57 | 0.213 |
| 58 | 58 | 0.423 |
| 59 | 59 | 0.173 |
| 6 | 6 | 0.28 |
| 60 | 60 | 0.538 |
| 61 | 61 | 0.707 |
| 62 | 62 | 0.983 |
| 63 | 63 | 0.135 |
| 64 | 64 | 0.525 |
| 65 | 65 | 0.0992 |
| 66 | 66 | 0.102 |
| 67 | 67 | 0.639 |
| 68 | 68 | 0.221 |
| 69 | 69 | 0.226 |
| 7 | 7 | 0.677 |
| 70 | 70 | 0.878 |
| 71 | 71 | 0.925 |
| 72 | 72 | 0.757 |
| 73 | 73 | 0.00455 |
| 74 | 74 | 0.478 |
| 75 | 75 | 0.47 |
| 76 | 76 | 0.362 |
| 77 | 77 | 0.119 |
| 78 | 78 | 0.67 |
| 79 | 79 | 0.73 |
| 8 | 8 | 0.0375 |
| 80 | 80 | 0.274 |
| 81 | 81 | 0.506 |
| 82 | 82 | 0.94 |
| 83 | 83 | 0.546 |
| 84 | 84 | 0.242 |
| 85 | 85 | 0.977 |
| 86 | 86 | 0.771 |
| 87 | 87 | 0.312 |
| 88 | 88 | 0.986 |
| 89 | 89 | 0.505 |
| 9 | 9 | 0.191 |
| 90 | 90 | 0.733 |
| 91 | 91 | 0.306 |
| 92 | 92 | 0.301 |
| 93 | 93 | 0.952 |
| 94 | 94 | 0.815 |
| 95 | 95 | 0.312 |
| 96 | 96 | 0.271 |
| 97 | 97 | 0.505 |
| 98 | 98 | 0.189 |
| 99 | 99 | 0.00223 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11375
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000048 human endothelial cell of the aorta sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
