FF:10465-106H6: Difference between revisions

Latest revision as of 14:25, 3 June 2020

Name:	melanoma cell line:G-361
Species:	Human (Homo sapiens)
Library ID:	CNhs11254
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	male
age	31
cell type	melanocyte
cell line	G-361
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005172

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11254		CAGE		DRX007931		DRR008803

Accession ID Hg19

Library id		BAM		CTSS
CNhs11254		DRZ000228		DRZ001613

Accession ID Hg38

Library id		BAM		CTSS
CNhs11254		DRZ011578		DRZ012963

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.149
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.01
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0234
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.495
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.146
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	1.184
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0775
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.384
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.109
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0383
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0995
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0.358
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0.196
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11254

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00399
MA0003.1	MA0003.1	0.0194
MA0004.1	MA0004.1	7.45182e-4
MA0006.1	MA0006.1	0.131
MA0007.1	MA0007.1	0.39
MA0009.1	MA0009.1	0.189
MA0014.1	MA0014.1	0.319
MA0017.1	MA0017.1	0.0816
MA0018.2	MA0018.2	0.0755
MA0019.1	MA0019.1	0.835
MA0024.1	MA0024.1	0.474
MA0025.1	MA0025.1	0.874
MA0027.1	MA0027.1	0.745
MA0028.1	MA0028.1	4.93708e-5
MA0029.1	MA0029.1	0.544
MA0030.1	MA0030.1	0.919
MA0031.1	MA0031.1	0.571
MA0035.2	MA0035.2	0.807
MA0038.1	MA0038.1	0.222
MA0039.2	MA0039.2	0.482
MA0040.1	MA0040.1	0.0991
MA0041.1	MA0041.1	0.0762
MA0042.1	MA0042.1	0.124
MA0043.1	MA0043.1	0.893
MA0046.1	MA0046.1	0.0444
MA0047.2	MA0047.2	0.855
MA0048.1	MA0048.1	0.0843
MA0050.1	MA0050.1	0.00246
MA0051.1	MA0051.1	0.249
MA0052.1	MA0052.1	0.0133
MA0055.1	MA0055.1	0.0235
MA0057.1	MA0057.1	0.97
MA0058.1	MA0058.1	2.13197e-5
MA0059.1	MA0059.1	5.75602e-5
MA0060.1	MA0060.1	0.233
MA0061.1	MA0061.1	9.99253e-4
MA0062.2	MA0062.2	3.27342e-7
MA0065.2	MA0065.2	0.813
MA0066.1	MA0066.1	0.436
MA0067.1	MA0067.1	0.354
MA0068.1	MA0068.1	0.0504
MA0069.1	MA0069.1	0.992
MA0070.1	MA0070.1	0.155
MA0071.1	MA0071.1	0.74
MA0072.1	MA0072.1	0.631
MA0073.1	MA0073.1	0.907
MA0074.1	MA0074.1	0.521
MA0076.1	MA0076.1	2.91774e-7
MA0077.1	MA0077.1	0.884
MA0078.1	MA0078.1	0.449
MA0079.2	MA0079.2	0.198
MA0080.2	MA0080.2	7.69283e-10
MA0081.1	MA0081.1	0.834
MA0083.1	MA0083.1	7.42404e-5
MA0084.1	MA0084.1	0.967
MA0087.1	MA0087.1	0.875
MA0088.1	MA0088.1	0.0623
MA0090.1	MA0090.1	0.154
MA0091.1	MA0091.1	0.156
MA0092.1	MA0092.1	0.231
MA0093.1	MA0093.1	1.3117e-4
MA0099.2	MA0099.2	4.74729e-9
MA0100.1	MA0100.1	0.745
MA0101.1	MA0101.1	0.0149
MA0102.2	MA0102.2	0.00112
MA0103.1	MA0103.1	0.149
MA0104.2	MA0104.2	5.79303e-6
MA0105.1	MA0105.1	5.16167e-4
MA0106.1	MA0106.1	0.129
MA0107.1	MA0107.1	7.65465e-4
MA0108.2	MA0108.2	5.87856e-7
MA0111.1	MA0111.1	0.798
MA0112.2	MA0112.2	0.0314
MA0113.1	MA0113.1	0.156
MA0114.1	MA0114.1	0.278
MA0115.1	MA0115.1	0.781
MA0116.1	MA0116.1	0.008
MA0117.1	MA0117.1	0.0988
MA0119.1	MA0119.1	0.665
MA0122.1	MA0122.1	0.0445
MA0124.1	MA0124.1	0.663
MA0125.1	MA0125.1	0.613
MA0131.1	MA0131.1	0.107
MA0135.1	MA0135.1	0.0874
MA0136.1	MA0136.1	5.24631e-6
MA0137.2	MA0137.2	0.166
MA0138.2	MA0138.2	0.913
MA0139.1	MA0139.1	0.525
MA0140.1	MA0140.1	0.377
MA0141.1	MA0141.1	0.114
MA0142.1	MA0142.1	0.0823
MA0143.1	MA0143.1	0.968
MA0144.1	MA0144.1	0.0199
MA0145.1	MA0145.1	0.111
MA0146.1	MA0146.1	0.71
MA0147.1	MA0147.1	2.29074e-6
MA0148.1	MA0148.1	0.956
MA0149.1	MA0149.1	0.5
MA0150.1	MA0150.1	3.10234e-4
MA0152.1	MA0152.1	0.972
MA0153.1	MA0153.1	0.653
MA0154.1	MA0154.1	0.0555
MA0155.1	MA0155.1	0.154
MA0156.1	MA0156.1	0.0423
MA0157.1	MA0157.1	0.961
MA0159.1	MA0159.1	0.626
MA0160.1	MA0160.1	0.622
MA0162.1	MA0162.1	0.0118
MA0163.1	MA0163.1	0.228
MA0164.1	MA0164.1	0.753
MA0258.1	MA0258.1	0.223
MA0259.1	MA0259.1	6.70991e-4

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11254

Novel motif	Logo	P-value
1	1	0.929
10	10	0.922
100	100	0.546
101	101	0.854
102	102	0.233
103	103	0.974
104	104	0.311
105	105	0.0668
106	106	0.0641
107	107	0.093
108	108	0.228
109	109	0.772
11	11	0.551
110	110	0.594
111	111	0.919
112	112	0.94
113	113	0.0754
114	114	0.489
115	115	0.822
116	116	0.649
117	117	0.833
118	118	0.325
119	119	0.214
12	12	0.0858
120	120	0.672
121	121	0.0954
122	122	0.999
123	123	0.483
124	124	0.743
125	125	0.927
126	126	0.759
127	127	0.193
128	128	0.743
129	129	0.267
13	13	0.619
130	130	0.54
131	131	0.0208
132	132	0.984
133	133	0.591
134	134	0.474
135	135	0.118
136	136	0.0102
137	137	0.582
138	138	0.773
139	139	0.558
14	14	0.605
140	140	0.182
141	141	0.393
142	142	0.0934
143	143	0.865
144	144	0.868
145	145	0.42
146	146	0.333
147	147	0.847
148	148	0.5
149	149	0.178
15	15	0.91
150	150	0.767
151	151	0.574
152	152	0.117
153	153	0.853
154	154	0.799
155	155	0.345
156	156	0.518
157	157	0.992
158	158	0.245
159	159	0.236
16	16	0.894
160	160	0.174
161	161	0.337
162	162	0.535
163	163	0.406
164	164	0.787
165	165	0.087
166	166	0.213
167	167	0.0229
168	168	0.743
169	169	0.0604
17	17	0.658
18	18	0.442
19	19	0.112
2	2	0.0274
20	20	0.0646
21	21	0.65
22	22	0.419
23	23	0.0888
24	24	0.837
25	25	0.159
26	26	0.85
27	27	0.193
28	28	0.859
29	29	0.478
3	3	0.817
30	30	0.103
31	31	0.42
32	32	0.0166
33	33	0.925
34	34	0.24
35	35	0.952
36	36	0.632
37	37	0.59
38	38	0.427
39	39	0.936
4	4	0.802
40	40	0.175
41	41	0.194
42	42	0.52
43	43	0.256
44	44	0.399
45	45	0.0978
46	46	0.448
47	47	0.839
48	48	0.778
49	49	0.365
5	5	0.334
50	50	0.399
51	51	0.39
52	52	0.0796
53	53	0.433
54	54	0.672
55	55	0.987
56	56	0.525
57	57	0.235
58	58	0.068
59	59	0.167
6	6	0.171
60	60	0.0643
61	61	0.432
62	62	0.0633
63	63	0.679
64	64	0.95
65	65	0.258
66	66	0.219
67	67	0.575
68	68	0.439
69	69	0.956
7	7	0.293
70	70	0.865
71	71	0.721
72	72	0.362
73	73	0.408
74	74	0.916
75	75	0.553
76	76	0.267
77	77	0.0854
78	78	0.266
79	79	0.407
8	8	0.809
80	80	0.0457
81	81	0.717
82	82	0.596
83	83	0.974
84	84	0.0396
85	85	0.317
86	86	0.131
87	87	0.492
88	88	0.456
89	89	0.0193
9	9	0.262
90	90	0.171
91	91	0.484
92	92	0.173
93	93	0.203
94	94	0.781
95	95	0.735
96	96	0.17
97	97	0.732
98	98	0.964
99	99	0.899

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11254

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101584 G-361 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1909 (melanoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100849 (melanoma cell line sample)
0101584 (G-361 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0003102,UBERON:0007376,UBERON:0006598,UBERON:0002532,UBERON:0000924,UBERON:0002416,UBERON:0006601,UBERON:0007383
+|DRA_sample_Accession=CAGE@SAMD00005172
+|accession_numbers=CAGE;DRX007931;DRR008803;DRZ000228;DRZ001613;DRZ011578;DRZ012963
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1909
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100849,FF:0101584
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:69985734..69985749,+!p2@MITF!2.48!298.60!MITF;;chr22:38380543..38380569,-!p1@SOX10!2.43!270.05!SOX10;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.97!93.06!EN2;;chr1:25291475..25291511,-!p2@RUNX3!1.78!58.81!RUNX3;;chr2:239148671..239148686,-!p1@HES6!1.74!190.69!HES6;;chr6:10415276..10415341,-!p2@TFAP2A!1.63!49.96!TFAP2A;;chr6:391743..391759,+!p1@IRF4!1.58!37.40!IRF4;;chr3:69985792..69985803,+!p7@MITF!1.58!37.40!MITF;;chr9:102584262..102584276,+!p1@NR4A3!1.55!74.79!NR4A3;;chr2:223163706..223163730,-!p1@PAX3!1.54!33.68!PAX3;;chr17:41622925..41622976,-!p3@ETV4!1.51!46.25!ETV4;;chr6:10412600..10412637,-!p1@TFAP2A!1.50!49.67!TFAP2A;;chr7:28448965..28448994,+!p2@CREB5!1.47!97.63!CREB5;;chr17:59477233..59477263,+!p1@TBX2!1.47!85.64!TBX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.44!29.97!TFAP2A;;chr8:80679993..80680011,-!p1@HEY1!1.43!37.40!HEY1;;chr10:35484053..35484076,+!p1@CREM!1.42!61.95!CREM;;chr12:26277817..26277863,-!p2@BHLHE41!1.39!31.40!BHLHE41;;chr12:52445218..52445237,+!p1@NR4A1!1.36!264.63!NR4A1;;chr4:109089901..109089930,-!p3@LEF1!1.36!21.98!LEF1;;chr15:42749722..42749739,-!p2@ZFP106!1.33!35.97!ZFP106;;chr17:41622765..41622821,-!p2@ETV4!1.29!28.26!ETV4;;chr20:55204351..55204377,+!p1@TFAP2C!1.28!22.84!TFAP2C;;chr9:102584278..102584285,+!p5@NR4A3!1.27!17.70!NR4A3;;chr8:22550982..22550999,-!p1@EGR3!1.25!46.82!EGR3;;chr1:158985493..158985535,+!p4@IFI16!1.24!24.55!IFI16;;chr1:25256756..25256774,-!p1@RUNX3!1.23!29.97!RUNX3;;chr17:59477275..59477286,+!p3@TBX2!1.23!21.12!TBX2;;chr1:165414325..165414369,-!p1@RXRG!1.23!15.99!RXRG;;chr1:165414227..165414242,-!p2@RXRG!1.22!15.42!RXRG;;chr19:47523058..47523114,+!p1@NPAS1!1.21!15.13!NPAS1;;chr10:131762504..131762555,-!p1@EBF3!1.21!15.13!EBF3;;chr9:102584241..102584261,+!p4@NR4A3!1.18!21.98!NR4A3;;chr19:9609272..9609297,-!p1@ZNF560!1.13!12.56!ZNF560;;chr11:16627528..16627550,-!p7@SOX6!1.12!12.28!SOX6;;chr17:46688334..46688385,-!p1@HOXB7!1.09!16.27!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!1.09!13.99!HOXC4;;chr12:85673977..85674015,+!p1@ALX1!1.09!11.42!ALX1;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.39!ETV4;;chr8:11561684..11561751,+!p1@GATA4!1.08!11.13!GATA4;;chr10:35484090..35484104,+!p6@CREM!1.05!10.28!CREM;;chr7:96654026..96654061,-!p2@DLX5!1.04!9.99!DLX5;;chr6:10412576..10412599,-!p5@TFAP2A!1.03!9.71!TFAP2A;;chr8:22550530..22550609,-!p2@EGR3!1.03!9.71!EGR3;;chr10:111987079..111987115,+!p3@MXI1!1.00!12.56!MXI1;;chr8:80680024..80680046,-!p2@HEY1!0.98!9.71!HEY1;;chr11:125034640..125034655,+!p1@PKNOX2!0.98!8.56!PKNOX2;;chr11:16629369..16629392,-!p5@SOX6!0.97!8.28!SOX6;;chr12:52448338..52448401,+!p7@NR4A1!0.97!8.28!NR4A1;;chr22:22874610..22874616,-!p1@ZNF280A!0.97!8.28!ZNF280A;;chr7:1570388..1570418,+!p2@MAFK!0.96!17.98!MAFK;;chr7:28725740..28725778,+!p1@CREB5!0.95!72.79!CREB5;;chr9:102584159..102584174,+!p2@NR4A3!0.95!14.56!NR4A3;;chr17:41623009..41623053,-!p4@ETV4!0.95!13.13!ETV4;;chr2:145277640..145277771,-!p1@ZEB2!0.94!107.33!ZEB2;;chr3:141087339..141087387,+!p2@ZBTB38!0.94!82.78!ZBTB38;;chr8:49833948..49833973,-!p2@SNAI2!0.94!51.38!SNAI2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.94!7.71!ZNF676;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.93!345.70!TBX19;;chr2:145277882..145277967,-!p3@ZEB2!0.93!13.13!ZEB2;;chr7:28448995..28449011,+!p4@CREB5!0.93!10.85!CREB5;;chr12:52431016..52431071,+!p4@NR4A1!0.93!8.85!NR4A1;;chr11:16629261..16629284,-!p1@SOX6!0.93!7.42!SOX6;;chr8:49833978..49833996,-!p1@SNAI2!0.92!158.43!SNAI2;;chr12:26277956..26277980,-!p1@BHLHE41!0.92!27.12!BHLHE41;;chr12:26277929..26277955,-!p3@BHLHE41!0.92!10.56!BHLHE41;;chr15:80696703..80696754,+!p1@ARNT2!0.92!9.99!ARNT2;;chr8:28748099..28748141,+!p2@HMBOX1!0.91!23.12!HMBOX1;;chr20:50179368..50179392,-!p2@NFATC2!0.91!9.42!NFATC2;;chr3:141151009..141151033,+!p10@ZBTB38!0.91!7.14!ZBTB38;;chr5:137804484..137804498,+!p2@EGR1!0.90!28.83!EGR1;;chr14:37131058..37131139,+!p1@PAX9!0.89!6.85!PAX9;;chr2:176994408..176994492,+!p1@HOXD8!0.89!6.85!HOXD8;;chr1:157108130..157108173,-!p1@ETV3!0.88!50.24!ETV3;;chr17:41622731..41622764,-!p5@ETV4!0.88!6.57!ETV4;;chr17:46703687..46703740,-!p1@HOXB9!0.88!6.57!HOXB9;;chr19:3574330..3574393,+!p2@HMG20B!0.88!6.57!HMG20B;;chr8:128748308..128748324,+!p2@MYC!0.87!187.27!MYC;;chr2:157189180..157189290,-!p1@NR4A2!0.87!35.68!NR4A2;;chr8:128750654..128750793,+!p3@MYC!0.87!26.83!MYC;;chr18:6414884..6414942,-!p1@L3MBTL4!0.86!7.99!L3MBTL4;;chr17:46682321..46682362,-!p1@HOXB6!0.86!6.28!HOXB6;;chr19:3574157..3574180,+!p4@HMG20B!0.86!6.28!HMG20B;;chr6:10415484..10415508,-!p3@TFAP2A!0.86!6.28!TFAP2A;;chr7:96634850..96634874,+!p3@DLX6!0.86!6.28!DLX6;;chr22:38597987..38598021,+!p2@MAFF!0.85!39.97!MAFF;;chr19:45971246..45971265,+!p1@FOSB!0.84!117.61!FOSB;;chr9:102584329..102584341,+!p6@NR4A3!0.84!5.99!NR4A3;;chr12:52448420..52448460,+!p5@NR4A1!0.84!5.99!NR4A1;;chr22:38598086..38598105,+!p1@MAFF!0.83!66.51!MAFF;;chr3:141868357..141868393,-!p3@TFDP2!0.83!40.82!TFDP2;;chr4:109090075..109090095,-!p2@LEF1!0.83!5.71!LEF1;;chr12:524482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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=FF:0100849
 |fonse_cell_line_closure=FF:0100849
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aG-361.CNhs11254.10465-106H6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aG-361.CNhs11254.10465-106H6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aG-361.CNhs11254.10465-106H6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aG-361.CNhs11254.10465-106H6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aG-361.CNhs11254.10465-106H6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10465-106H6
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0101584
+|is_a=EFO:0002091;;FF:0000210;;FF:0101584
+|is_obsolete=
+|library_id=CNhs11254
+|library_id_phase_based=2:CNhs11254
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10465
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10465
 |name=melanoma cell line:G-361
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11254,LSID757,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=106
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=60.016
 |sample_age=31
+|sample_category=cell lines
 |sample_cell_catalog=RCB0991
 |sample_cell_line=G-361
@@ Line 77: / Line 99: @@
 |sample_tissue=skin
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10465-106H6;search_select_hide=table117:FF:10465-106H6
 }}

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FF:10465-106H6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:25, 3 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0