FF:10182-103D2: Difference between revisions

Latest revision as of 12:25, 3 June 2020

Name:	locus coeruleus - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13808
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	locus coeruleus
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004969

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13808		CAGE		DRX008676		DRR009548

Accession ID Hg19

Library id		BAM		CTSS
CNhs13808		DRZ000973		DRZ002358

Accession ID Hg38

Library id		BAM		CTSS
CNhs13808		DRZ012323		DRZ013708

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.217
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.691
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.337
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0528
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.613
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.335
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0528
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.207
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.0763
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.0999
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.627
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.00863
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.158
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.848
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0528
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0528
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.135
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0528
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0164
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0528
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.776
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.137
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.613
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.505
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0528
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.539
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.384
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0528
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	1.002
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0642
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.128
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.652
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0999
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0.0999
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.181
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.511
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.806
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.002
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0528
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.181
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.191
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0528
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.393
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.335
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.599
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0528
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.36
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0248
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0.0528
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13808

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0381
MA0003.1	MA0003.1	0.229
MA0004.1	MA0004.1	0.293
MA0006.1	MA0006.1	0.477
MA0007.1	MA0007.1	0.377
MA0009.1	MA0009.1	0.192
MA0014.1	MA0014.1	0.728
MA0017.1	MA0017.1	0.00477
MA0018.2	MA0018.2	0.0415
MA0019.1	MA0019.1	0.803
MA0024.1	MA0024.1	0.705
MA0025.1	MA0025.1	0.698
MA0027.1	MA0027.1	0.645
MA0028.1	MA0028.1	0.0647
MA0029.1	MA0029.1	0.205
MA0030.1	MA0030.1	0.318
MA0031.1	MA0031.1	0.78
MA0035.2	MA0035.2	0.0112
MA0038.1	MA0038.1	0.246
MA0039.2	MA0039.2	0.341
MA0040.1	MA0040.1	0.649
MA0041.1	MA0041.1	0.81
MA0042.1	MA0042.1	0.703
MA0043.1	MA0043.1	0.499
MA0046.1	MA0046.1	0.0208
MA0047.2	MA0047.2	0.0854
MA0048.1	MA0048.1	0.11
MA0050.1	MA0050.1	0.0254
MA0051.1	MA0051.1	0.123
MA0052.1	MA0052.1	0.757
MA0055.1	MA0055.1	0.00107
MA0057.1	MA0057.1	0.748
MA0058.1	MA0058.1	0.302
MA0059.1	MA0059.1	0.075
MA0060.1	MA0060.1	0.31
MA0061.1	MA0061.1	0.00555
MA0062.2	MA0062.2	0.00281
MA0065.2	MA0065.2	0.00104
MA0066.1	MA0066.1	0.0127
MA0067.1	MA0067.1	0.573
MA0068.1	MA0068.1	0.631
MA0069.1	MA0069.1	0.732
MA0070.1	MA0070.1	0.185
MA0071.1	MA0071.1	0.0415
MA0072.1	MA0072.1	0.714
MA0073.1	MA0073.1	0.444
MA0074.1	MA0074.1	0.182
MA0076.1	MA0076.1	0.123
MA0077.1	MA0077.1	0.0278
MA0078.1	MA0078.1	0.839
MA0079.2	MA0079.2	0.586
MA0080.2	MA0080.2	4.87447e-8
MA0081.1	MA0081.1	0.0273
MA0083.1	MA0083.1	0.108
MA0084.1	MA0084.1	0.227
MA0087.1	MA0087.1	0.221
MA0088.1	MA0088.1	0.13
MA0090.1	MA0090.1	0.239
MA0091.1	MA0091.1	0.333
MA0092.1	MA0092.1	0.291
MA0093.1	MA0093.1	0.344
MA0099.2	MA0099.2	1.25751e-13
MA0100.1	MA0100.1	0.699
MA0101.1	MA0101.1	0.00462
MA0102.2	MA0102.2	0.293
MA0103.1	MA0103.1	0.068
MA0104.2	MA0104.2	0.33
MA0105.1	MA0105.1	1.5944e-4
MA0106.1	MA0106.1	0.0258
MA0107.1	MA0107.1	0.00405
MA0108.2	MA0108.2	0.491
MA0111.1	MA0111.1	0.5
MA0112.2	MA0112.2	0.00104
MA0113.1	MA0113.1	0.495
MA0114.1	MA0114.1	0.00789
MA0115.1	MA0115.1	0.829
MA0116.1	MA0116.1	0.00233
MA0117.1	MA0117.1	0.877
MA0119.1	MA0119.1	0.1
MA0122.1	MA0122.1	0.88
MA0124.1	MA0124.1	0.862
MA0125.1	MA0125.1	0.192
MA0131.1	MA0131.1	0.819
MA0135.1	MA0135.1	0.0141
MA0136.1	MA0136.1	7.53915e-12
MA0137.2	MA0137.2	0.0696
MA0138.2	MA0138.2	0.252
MA0139.1	MA0139.1	0.349
MA0140.1	MA0140.1	0.00884
MA0141.1	MA0141.1	0.0153
MA0142.1	MA0142.1	0.356
MA0143.1	MA0143.1	0.0631
MA0144.1	MA0144.1	0.934
MA0145.1	MA0145.1	0.347
MA0146.1	MA0146.1	0.0212
MA0147.1	MA0147.1	0.202
MA0148.1	MA0148.1	0.0976
MA0149.1	MA0149.1	0.0148
MA0150.1	MA0150.1	0.0023
MA0152.1	MA0152.1	0.742
MA0153.1	MA0153.1	0.493
MA0154.1	MA0154.1	0.0249
MA0155.1	MA0155.1	0.654
MA0156.1	MA0156.1	5.01237e-7
MA0157.1	MA0157.1	0.583
MA0159.1	MA0159.1	0.00991
MA0160.1	MA0160.1	0.0724
MA0162.1	MA0162.1	0.155
MA0163.1	MA0163.1	1.00061e-7
MA0164.1	MA0164.1	0.6
MA0258.1	MA0258.1	0.0138
MA0259.1	MA0259.1	0.646

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13808

Novel motif	Logo	P-value
1	1	0.0438
10	10	0.0425
100	100	0.333
101	101	0.824
102	102	0.876
103	103	0.0667
104	104	0.139
105	105	0.164
106	106	0.0521
107	107	0.167
108	108	0.913
109	109	0.00468
11	11	0.0105
110	110	0.0334
111	111	0.205
112	112	0.419
113	113	0.53
114	114	0.133
115	115	0.842
116	116	0.156
117	117	0.00714
118	118	0.0982
119	119	0.248
12	12	0.624
120	120	0.141
121	121	0.447
122	122	0.915
123	123	0.968
124	124	0.134
125	125	0.257
126	126	0.0686
127	127	0.45
128	128	0.225
129	129	0.448
13	13	0.00209
130	130	0.226
131	131	0.0231
132	132	0.732
133	133	0.0104
134	134	0.69
135	135	0.19
136	136	0.00643
137	137	0.574
138	138	0.775
139	139	0.108
14	14	0.898
140	140	0.55
141	141	0.496
142	142	0.827
143	143	0.0408
144	144	0.875
145	145	0.155
146	146	0.396
147	147	0.603
148	148	0.297
149	149	0.0955
15	15	0.0557
150	150	0.159
151	151	0.728
152	152	0.167
153	153	0.935
154	154	0.455
155	155	0.789
156	156	0.229
157	157	0.459
158	158	0.145
159	159	0.00649
16	16	0.0414
160	160	0.196
161	161	0.162
162	162	0.84
163	163	0.842
164	164	0.0108
165	165	0.114
166	166	0.963
167	167	0.783
168	168	0.357
169	169	0.0151
17	17	0.0898
18	18	0.072
19	19	0.285
2	2	0.895
20	20	0.171
21	21	0.0635
22	22	0.274
23	23	0.487
24	24	0.0379
25	25	0.53
26	26	1.51374e-4
27	27	0.722
28	28	0.791
29	29	0.00891
3	3	0.0371
30	30	0.866
31	31	0.901
32	32	0.0126
33	33	0.0704
34	34	0.739
35	35	0.378
36	36	0.173
37	37	0.0468
38	38	0.31
39	39	0.43
4	4	0.961
40	40	0.0577
41	41	0.29
42	42	0.209
43	43	0.118
44	44	0.122
45	45	0.714
46	46	0.0328
47	47	0.0488
48	48	0.0375
49	49	0.22
5	5	0.695
50	50	0.358
51	51	0.362
52	52	0.715
53	53	0.903
54	54	0.425
55	55	0.611
56	56	0.51
57	57	0.302
58	58	0.33
59	59	0.0664
6	6	0.939
60	60	0.114
61	61	0.0779
62	62	0.158
63	63	0.174
64	64	0.157
65	65	0.22
66	66	0.183
67	67	0.363
68	68	0.373
69	69	0.614
7	7	0.0847
70	70	0.0154
71	71	0.00566
72	72	0.356
73	73	0.0624
74	74	0.873
75	75	0.0204
76	76	0.303
77	77	0.162
78	78	0.00346
79	79	0.273
8	8	0.0575
80	80	0.458
81	81	0.427
82	82	0.621
83	83	0.0801
84	84	0.511
85	85	0.383
86	86	0.15
87	87	6.95285e-4
88	88	0.751
89	89	0.194
9	9	0.496
90	90	0.0842
91	91	0.699
92	92	0.562
93	93	0.585
94	94	0.129
95	95	0.0215
96	96	0.802
97	97	0.605
98	98	0.248
99	99	0.526

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13808

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
FF:0011487 human locus coeruleus- adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000988 (pons)
0002148 (locus ceruleus)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0006331 (brainstem nucleus)
0009662 (hindbrain nucleus)
0000125 (neural nucleus)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002298 (brainstem)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011487 (human locus coeruleus- adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0000988,UBERON:0000483,UBERON:0002148,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0002020,UBERON:0003528,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002680,UBERON:0002308,UBERON:0004733,UBERON:0004732,UBERON:0006331,UBERON:0009662,UBERON:0000125,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0005743,UBERON:0001895,UBERON:0002298,UBERON:0002028,UBERON:0003075,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0010092,UBERON:0003076,UBERON:0007277,UBERON:0007284,UBERON:0003057,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00004969
+|accession_numbers=CAGE;DRX008676;DRR009548;DRZ000973;DRZ002358;DRZ012323;DRZ013708
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000988,UBERON:0002148,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0006331,UBERON:0009662,UBERON:0000125,UBERON:0002020,UBERON:0010317,UBERON:0002308,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002298,UBERON:0002028
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011487
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.84!696.96!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.63!423.14!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!2.13!271.24!C11orf9;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.12!129.41!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.05!112.48!SOX10;;chr10:48355030..48355090,+!p1@ZNF488!2.02!130.71!ZNF488;;chr8:53322304..53322340,-!p1@ST18!1.97!91.92!ST18;;chr21:34442540..34442560,+!p2@OLIG1!1.97!91.53!OLIG1;;chr12:106976774..106976788,+!p1@RFX4!1.92!82.09!RFX4;;chr2:145277882..145277967,-!p3@ZEB2!1.88!126.05!ZEB2;;chr3:181429704..181429722,+!p1@SOX2!1.77!57.53!SOX2;;chr9:77112244..77112262,+!p1@RORB!1.76!62.31!RORB;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.71!50.16!POU3F3;;chr9:114287433..114287513,+!p1@ZNF483!1.69!120.62!ZNF483;;chr10:134599649..134599653,-!p1@NKX6-2!1.68!46.41!NKX6-2;;chr16:1031762..1031781,+!p1@SOX8!1.67!45.64!SOX8;;chr8:53322347..53322378,-!p2@ST18!1.67!45.64!ST18;;chr21:34398234..34398250,+!p1@OLIG2!1.67!45.38!OLIG2;;chr12:106976678..106976708,+!p2@RFX4!1.65!43.44!RFX4;;chr12:26277956..26277980,-!p1@BHLHE41!1.54!116.23!BHLHE41;;chr12:103351444..103351461,+!p1@ASCL1!1.54!34.00!ASCL1;;chr11:8102846..8102892,+!p1@TUB!1.51!42.92!TUB;;chr12:26277817..26277863,-!p2@BHLHE41!1.48!39.17!BHLHE41;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.48!28.96!SMARCE1;;chr15:80696703..80696754,+!p1@ARNT2!1.47!37.49!ARNT2;;chr1:214161272..214161322,+!p1@PROX1!1.46!38.91!PROX1;;chr19:46801639..46801699,+!p1@HIF3A!1.45!27.28!HIF3A;;chr3:181429741..181429767,+!p2@SOX2!1.45!27.28!SOX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.44!37.75!ZBTB16;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.44!26.76!ZBED1;;chr7:63505799..63505904,+!p1@ZNF727!1.44!26.24!ZNF727;;chr14:33408072..33408114,+!p2@NPAS3!1.42!29.61!NPAS3;;chr20:62680984..62680999,-!p1@SOX18!1.41!32.84!SOX18;;chr14:33403881..33403924,+!p1@NPAS3!1.38!22.88!NPAS3;;chr1:61548069..61548102,+!p3@NFIA!1.36!51.84!NFIA;;chr12:54779511..54779577,-!p5@ZNF385A!1.36!21.98!ZNF385A;;chr4:81118647..81118666,+!p1@PRDM8!1.33!26.63!PRDM8;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.33!20.56!POU3F3;;chr6:126112039..126112062,+!p8@NCOA7!1.30!22.62!NCOA7;;chr19:57352109..57352153,-!p2@ZIM2!1.30!18.75!ZIM2;;chr4:57547454..57547469,-!p1@HOPX!1.29!18.36!HOPX;;chr19:30863271..30863338,+!p1@ZNF536!1.28!18.23!ZNF536;;chr12:54785074..54785122,-!p2@ZNF385A!1.26!26.50!ZNF385A;;chr11:31832658..31832681,-!p1@PAX6!1.24!16.29!PAX6;;chr14:33403648..33403710,+!p3@NPAS3!1.24!16.29!NPAS3;;chr14:73360799..73360817,-!p1@DPF3!1.22!53.14!DPF3;;chr19:13135386..13135435,+!p4@NFIX!1.22!15.77!NFIX;;chr21:34442584..34442587,+!p3@OLIG1!1.22!15.77!OLIG1;;chr4:41750731..41750748,-!p1@PHOX2B!1.22!15.64!PHOX2B;;chr2:95963052..95963106,+!p1@KCNIP3!1.21!15.13!KCNIP3;;chr3:126076242..126076257,-!p1@KLF15!1.19!17.84!KLF15;;chr2:145275982..145276003,-!p7@ZEB2!1.18!13.96!ZEB2;;chr13:72441315..72441454,-!p1@DACH1!1.16!27.02!DACH1;;chr20:50179368..50179392,-!p2@NFATC2!1.16!17.32!NFATC2;;chr17:53342311..53342400,+!p1@HLF!1.16!15.26!HLF;;chr19:22193731..22193751,-!p1@ZNF208!1.16!13.45!ZNF208;;chr12:103352277..103352324,+!p2@ASCL1!1.16!13.45!ASCL1;;chr19:46800289..46800327,+!p2@HIF3A!1.16!13.45!HIF3A;;chr19:58545454..58545498,+!p1@ZSCAN1!1.16!13.45!ZSCAN1;;chr7:28725740..28725778,+!p1@CREB5!1.15!116.48!CREB5;;chr20:21494654..21494678,-!p2@NKX2-2!1.15!13.06!NKX2-2;;chr6:126070769..126070801,+!p1@HEY2!1.14!14.61!HEY2;;chr1:40105299..40105326,-!p1@HEYL!1.14!12.67!HEYL;;chr3:187463179..187463201,-!p2@BCL6!1.13!51.97!BCL6;;chr17:7492684..7492778,-!p2@SOX15!1.13!26.63!SOX15;;chr8:40755333..40755352,-!p1@ZMAT4!1.13!12.41!ZMAT4;;chr3:147127177..147127194,+!p2@ZIC1!1.12!12.28!ZIC1;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.89!IRX2;;chr15:80733570..80733659,+!p2@ARNT2!1.11!11.89!ARNT2;;chr10:111987079..111987115,+!p3@MXI1!1.10!16.03!MXI1;;chr11:113930401..113930422,+!p3@ZBTB16!1.10!11.64!ZBTB16;;chr11:47400078..47400106,-!p1@SPI1!1.10!11.51!SPI1;;chr6:19837592..19837621,+!p1@ID4!1.09!69.17!ID4;;chr12:26277929..26277955,-!p3@BHLHE41!1.09!16.03!BHLHE41;;chr10:48359344..48359376,+!p2@ZNF488!1.09!11.25!ZNF488;;chr16:51185318..51185348,-!p2@SALL1!1.09!11.25!SALL1;;chr1:61548225..61548299,+!p1@NFIA!1.08!145.06!NFIA;;chr10:64134120..64134183,+!p1@ZNF365!1.08!13.45!ZNF365;;chr8:80679993..80680011,-!p1@HEY1!1.07!15.77!HEY1;;chr11:125034640..125034655,+!p1@PKNOX2!1.06!10.60!PKNOX2;;chr3:147127142..147127168,+!p1@ZIC1!1.06!10.47!ZIC1;;chr16:51185172..51185197,-!p1@SALL1!1.06!10.47!SALL1;;chr14:21994337..21994442,-!p1@SALL2!1.05!28.31!SALL2;;chr2:166326200..166326216,+!p1@CSRNP3!1.05!15.00!CSRNP3;;chr4:26344778..26344807,+!p8@RBPJ!1.05!10.34!RBPJ;;chr14:21994449..21994524,-!p2@SALL2!1.04!30.51!SALL2;;chr4:57547751..57547764,-!p6@HOPX!1.04!10.08!HOPX;;chr8:80680024..80680046,-!p2@HEY1!1.03!10.99!HEY1;;chr2:95963120..95963136,+!p2@KCNIP3!1.03!9.83!KCNIP3;;chr19:13135582..13135600,+!p3@NFIX!1.03!9.83!NFIX;;chr21:39870339..39870443,-!p1@ERG!1.03!9.83!ERG;;chr22:41763452..41763466,+!p2@TEF!1.03!9.70!TEF;;chr6:126112074..126112144,+!p1@NCOA7!1.02!129.15!NCOA7;;chr17:70117153..70117174,+!p1@SOX9!1.02!99.42!SOX9;;chr8:145560371..145560449,-!p1@SCRT1!1.02!9.57!SCRT1;;chr2:145277640..145277771,-!p1@ZEB2!1.01!125.66!ZEB2;;chr19:21512202..21512225,-!p1@ZNF708!1.01!47.83!ZNF708;;chr19:9879350..9879419,-!p2@ZNF846!1.01!19.78!ZNF846;;chr8:145560111..145560165,-!p2@SCRT1!1.01!9.31!SCRT1;;chr10:119302232..119302265,+!p1@EMX2!1.01!9.31!EMX2;;chr12:106976656..106976672,+!p4@RFX4!1.01!9.31!RFX4;;chr19:38085768..38085821,+!p1@ZNF540!1.00!13.57!ZNF540;;chr7:6655225..6655279,+!p1@ENST00000457543!1.00!13.57!ZNF853;;chr5:71803177..71803255,-!p1@ZNF366!1.00!9.05!ZNF366;;chr1:61547894..61547968,+!p2@NFIA!0.99!25.99!NFIA;;chr20:51588873..51588953,+!p1@TSHZ2!0.99!11.64!TSHZ2;;chr17:38219209..38219230,+!p1@THRA!0.98!114.03!THRA;;chr1:151032860..151032918,+!p1@MLLT11!0.98!103.04!MLLT11;;chr12:54785054..54785072,-!p4@ZNF385A!0.98!9.70!ZNF385A;;chr1:217263131..217263207,-!p4@ESRRG!0.98!8.53!ESRRG;;chr16:67198633..67198671,+!p1@HSF4!0.98!8.53!HSF4;;chr2:2334997..2335053,-!p1@MYT1L!0.98!8.53!MYT1L;;chrX:106959661..106959763,-!p4@TSC22D3!0.97!25.34!TSC22D3;;chr3:114343768..114343822,-!p1@ZBTB20!0.96!36.33!ZBTB20;;chr3:52001396..52001425,-!p4@PCBP4!0.96!14.61!PCBP4;;chrX:84498989..84499003,+!p1@ZNF711!0.96!11.12!ZNF711;;chr11:8102819..8102845,+!p3@TUB!0.96!10.21!TUB;;chr2:239148671..239148686,-!p1@HES6!0.95!29.99!HES6;;chrX:70315688..70315709,+!p1@FOXO4!0.95!19.00!FOXO4;;chr2:16080659..16080685,+!p1@MYCN!0.95!8.02!MYCN;;chr2:177053386..177053402,+!p1@HOXD1!0.95!7.89!HOXD1;;chr20:21494684..21494708,-!p1@NKX2-2!0.95!7.89!NKX2-2;;chr12:54772960..54773015,-!p3@ZNF385A!0.94!38.66!ZNF385A;;chr19:21512144..21512191,-!p2@ZNF708!0.94!36.97!ZNF708;;chr3:114819124..114819200,-!p3@ZBTB20!0.94!18.49!ZBTB20;;chr1:151032922..151032951,+!p2@MLLT11!0.94!13.19!MLLT11;;chr3:126076264..126076305,-!p2@KLF15!0.94!10.99!KLF15;;chr3:114173720..114173794,-!p6@ZBTB20!0.94!7.76!ZBTB20;;chr10:64134045..64134083,+!p3@ZNF365!0.94!7.76!ZNF365;;chr9:14314131..14314147,-!p2@NFIB!0.93!43.31!NFIB;;chr11:113930291..113930339,+!p2@ZBTB16!0.93!12.67!ZBTB16;;chr1:23696348..23696363,-!p4@ZNF436!0.93!8.53!ZNF436;;chr3:141105705..141105770,+!p4@ZBTB38!0.92!8.92!ZBTB38;;chr4:57522598..57522664,-!p3@HOPX!0.92!7.37!HOPX;;chr14:33408493..33408525,+!p4@NPAS3!0.92!7.24!NPAS3;;chr19:53636125..53636178,-!p1@ZNF415!0.91!20.94!ZNF415;;chr15:57511609..57511651,+!p2@TCF12!0.91!12.28!TCF12;;chr7:64023410..64023428,-!p2@ZNF680!0.91!11.51!ZNF680;;chr7:50344289..50344323,+!p1@IKZF1!0.91!7.11!IKZF1;;chr13:72441074..72441172,-!p2@DACH1!0.91!7.11!DACH1;;chr7:86781858..86781879,+!p3@DMTF1!0.90!11.64!DMTF1;;chr20:50159198..50159299,-!p1@NFATC2!0.90!10.47!NFATC2;;chr4:57522166..57522260,-!p2@HOPX!0.90!8.02!HOPX;;chr2:145275947..145275981,-!p10@ZEB2!0.90!6.98!ZEB2;;chr17:37764128..37764258,-!p1@NEUROD2!0.90!6.98!NEUROD2;;chr11:31832862..31832884,-!p2@PAX6!0.90!6.98!PAX6;;chr12:54778471..54778528,-!p1@ZNF385A!0.90!6.98!ZNF385A;;chr7:28448965..28448994,+!p2@CREB5!0.89!24.95!CREB5;;chr19:21512115..21512135,-!p3@ZNF708!0.89!14.35!ZNF708;;chr13:45151509..45151539,-!p6@TSC22D1!0.89!11.76!TSC22D1;;chr1:61924375..61924380,+!p6@NFIA!0.89!9.70!NFIA;;chr5:92919100..92919135,+!p3@NR2F1!0.89!8.40!NR2F1;;chr1:61548118..61548129,+!p9@NFIA!0.89!7.63!NFIA;;chr5:124084493..124084524,-!p2@ZNF608!0.88!15.13!ZNF608;;chr9:14314946..14314983,-!p8@NFIB!0.88!6.59!NFIB;;chr18:76739816..76739822,+!p1@SALL3!0.88!6.59!SALL3;;chr15:60884706..60884743,-!p1@RORA!0.87!35.16!RORA;;chr10:35484053..35484076,+!p1@CREM!0.87!16.81!CREM;;chrX:118739835..118739862,-!p1@NKRF!0.87!7.11!NKRF;;chr15:80696666..80696700,+!p4@ARNT2!0.87!6.46!ARNT2;;chr2:60781201..60781258,-!p3@BCL11A!0.87!6.46!BCL11A;;chr6:15401104..15401166,+!p5@JARID2!0.87!6.33!JARID2;;chr5:124082322..124082364,-!p1@ZNF608!0.86!16.55!ZNF608;;chr13:46549911..46549956,-!p3@ZC3H13!0.86!9.05!ZC3H13;;chr19:57183114..57183145,-!p1@ZNF835!0.86!7.11!ZNF835;;chr11:31839488..31839515,-!p3@PAX6!0.86!6.21!PAX6;;chr14:22005197..22005261,-!p3@SALL2!0.86!6.21!SALL2;;chr10:38265517..38265591,-!p1@ZNF25!0.85!25.08!ZNF25;;chr1:244219775..244219893,+!p2@ZNF238!0.85!8.53!ZNF238;;chr20:42544782..42544828,+!p4@TOX2!0.85!6.08!TOX2;;chr4:26344754..26344772,+!p10@RBPJ!0.85!6.08!RBPJ;;chr15:80696836..80696853,+!p7@ARNT2!0.85!6.08!ARNT2;;chr18:45935720..45935772,-!p1@ZBTB7C!0.85!6.08!ZBTB7C;;chr11:31832687..31832704,-!p6@PAX6!0.85!6.08!PAX6;;chr8:30890810..30890880,-!p1@PURG!0.85!6.08!PURG;;chr21:47063625..47063658,+!p1@PCBP3!0.84!27.54!PCBP3;;chr20:3388541..3388575,-!p2@C20orf194!0.84!24.43!C20orf194;;chr6:91006518..91006570,-!p1@BACH2!0.84!14.22!BACH2;;chr11:85393886..85393913,-!p3@CREBZF!0.84!5.95!CREBZF;;chr16:85932760..85932775,+!p1@IRF8!0.84!5.95!IRF8;;chr17:47439437..47439533,-!p1@ZNF652!0.83!49.77!ZNF652;;chr17:38219143..38219154,+!p2@THRA!0.83!21.72!THRA;;chr2:214016314..214016343,-!p2@IKZF2!0.83!9.95!IKZF2;;chr1:170633348..170633399,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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001895;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002148;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002298;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%2520-%2520adult%252c%2520donor10196.CNhs13808.10182-103D2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%2520-%2520adult%252c%2520donor10196.CNhs13808.10182-103D2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%2520-%2520adult%252c%2520donor10196.CNhs13808.10182-103D2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/locus%2520coeruleus%2520-%2520adult%252c%2520donor10196.CNhs13808.10182-103D2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/locus%2520coeruleus%2520-%2520adult%252c%2520donor10196.CNhs13808.10182-103D2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10182-103D2
 |is_a=FF:0011487
 |is_obsolete=
+|library_id=CNhs13808
+|library_id_phase_based=2:CNhs13808
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10182
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10182
 |name=locus coeruleus - adult, donor10196
 |namespace=
@@ Line 45: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=103
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@@ Line 58: / Line 79: @@
 |rna_weight_ug=56.1675
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+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=REST:3.4612153696;SOX2:3.26847257765;MYFfamily:3.25720988543;NHLH1,2:3.1926523195;MTF1:3.17597833668;SOX5:3.11723342931;RREB1:3.07495197278;ZFP161:2.97161365241;HIC1:2.82044729224;DBP:2.73683031051;MED-1{core}:2.63268911072;NFIX:2.61926454577;PRDM1:2.61461677855;PRRX1,2:2.55195947251;MTE{core}:2.54256120786;ATF2:2.49698064446;RFX1:2.48625688943;SOX{8,9,10}:2.47400080459;RFX2..5_RFXANK_RFXAP:2.41887829559;ZBTB6:2.409318411;TFAP2B:2.37338760627;CUX2:2.37268629176;NANOG:2.29772577751;LMO2:2.24834892161;GFI1B:2.22705347954;OCT4_SOX2{dimer}:2.22424281469;EGR1..3:2.202735277;GATA4:2.19212214499;NKX3-2:2.18006628059;GTF2I:2.17794203561;KLF4:2.16808997816;PAX6:2.15119172651;SMAD1..7,9:2.14486352473;HOXA9_MEIS1:2.13430002242;FOXP3:2.11279044092;TGIF1:2.05958290483;HOX{A6,A7,B6,B7}:2.05454003262;PATZ1:2.05242099696;SOX17:1.99883892868;JUN:1.99090069329;HBP1_HMGB_SSRP1_UBTF:1.92926540026;MZF1:1.91456556428;MAZ:1.76236469253;EP300:1.75830779643;BREu{core}:1.73542754936;FOXD3:1.69792833156;SP1:1.69294373999;ZNF384:1.63683783841;PAX5:1.63298467978;GCM1,2:1.61007581336;NKX6-1,2:1.60414865484;AHR_ARNT_ARNT2:1.5899397087;EBF1:1.56392946264;XBP1:1.54243101565;PDX1:1.51199414622;STAT2,4,6:1.50946317993;POU6F1:1.47505309352;FOXM1:1.47251600387;ZNF423:1.45915454318;TFDP1:1.41282739735;LEF1_TCF7_TCF7L1,2:1.3953982831;BPTF:1.35868645554;MYBL2:1.32370666205;FOXP1:1.28525526481;RBPJ:1.23371814522;POU5F1:1.23295099008;NR3C1:1.19865923251;STAT1,3:1.17381931286;NRF1:1.1734158979;RORA:1.16502925818;POU3F1..4:1.15345431815;IKZF2:1.1448834086;ZIC1..3:1.13654104034;TFAP2{A,C}:1.13142209846;CDC5L:1.10772719417;ARID5B:1.06533030224;TLX1..3_NFIC{dimer}:1.02253655765;VSX1,2:1.01491920051;FOXQ1:0.996437319196;NKX2-3_NKX2-5:0.970222462504;HOX{A4,D4}:0.909130809355;ONECUT1,2:0.847569930825;FOX{D1,D2}:0.83548915154;AR:0.764225752728;SREBF1,2:0.761159280039;CRX:0.73850932352;MAFB:0.707446416353;ZNF143:0.689192998852;LHX3,4:0.663356160293;ADNP_IRX_SIX_ZHX:0.64009222103;ZBTB16:0.628451345664;HMGA1,2:0.61175983417;PAX4:0.504485105883;CREB1:0.471432125052;GTF2A1,2:0.443717262151;FOXO1,3,4:0.440905925087;ESRRA:0.421624454881;T:0.420956320079;FOXN1:0.418598892451;NKX3-1:0.398190782075;ATF5_CREB3:0.317350056504;XCPE1{core}:0.310050967761;FOX{F1,F2,J1}:0.300845394414;IRF7:0.282013065057;FOX{I1,J2}:0.253852631567;ATF4:0.21054774742;GFI1:0.210192538507;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.155148317182;NFIL3:0.131394840093;EVI1:0.130683118449;PAX2:0.122302678184;HMX1:0.11609045008;GZF1:0.098230400282;MEF2{A,B,C,D}:0.0280197190496;PBX1:0.016836579756;NFY{A,B,C}:0.00548663563213;ALX1:-0.00715185644759;ZEB1:-0.0111020490585;HAND1,2:-0.0526798276773;NR5A1,2:-0.0748315978365;NFATC1..3:-0.0776234939237;IRF1,2:-0.0928309631718;SPZ1:-0.0944717758489;TFCP2:-0.0963175302361;NFE2L2:-0.098030067777;MYOD1:-0.119451471581;TOPORS:-0.120797505289;FOXL1:-0.178153747349;AIRE:-0.194314743359;ZNF238:-0.241518959283;NR1H4:-0.271014641218;NFE2L1:-0.275409052166;CEBPA,B_DDIT3:-0.277649403806;UFEwm:-0.282534065905;PAX3,7:-0.287809898827;CDX1,2,4:-0.307843555284;NFE2:-0.316750580281;ATF6:-0.329981772314;POU1F1:-0.339848685699;PITX1..3:-0.380874743071;NKX2-1,4:-0.390399578058;ALX4:-0.393494358076;GATA6:-0.469785895947;TBX4,5:-0.473235721751;YY1:-0.534181808042;FOXA2:-0.534259096111;SPI1:-0.577917426206;NANOG{mouse}:-0.581700490288;TP53:-0.591658027452;TBP:-0.596892931839;TLX2:-0.601202886153;TEF:-0.65698837616;ETS1,2:-0.659064052531;HNF4A_NR2F1,2:-0.666558495347;IKZF1:-0.68158762729;TFAP4:-0.702841512057;HNF1A:-0.73889951789;DMAP1_NCOR{1,2}_SMARC:-0.75438384131;NKX2-2,8:-0.77344025755;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.781022444692;SPIB:-0.806621209063;bHLH_family:-0.81142766039;HSF1,2:-0.88055871951;SNAI1..3:-0.905126291912;PAX8:-0.907077101738;HIF1A:-0.93185683147;TEAD1:-0.937193329778;ESR1:-0.940216968836;BACH2:-0.942597842913;FOS_FOS{B,L1}_JUN{B,D}:-0.948073139394;FOSL2:-0.990727282183;PAX1,9:-1.01080500855;SRF:-1.09195916311;E2F1..5:-1.2223350223;NFKB1_REL_RELA:-1.22604444369;HLF:-1.23533488092;ELK1,4_GABP{A,B1}:-1.24650392647;ELF1,2,4:-1.32985581098;RUNX1..3:-1.34702588647;RXR{A,B,G}:-1.3620364759;POU2F1..3:-1.36997617815;ZNF148:-1.43932916314;NR6A1:-1.52446640412;MYB:-1.53379996216;HES1:-1.59129664022;TAL1_TCF{3,4,12}:-1.71925284182;GLI1..3:-1.83532879427;PPARG:-1.96568154983;RXRA_VDR{dimer}:-2.33995500824;HOX{A5,B5}:-2.40760983777;STAT5{A,B}:-2.55389876892;EN1,2:-2.80531514899
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10182-103D2;search_select_hide=table117:FF:10182-103D2
 }}

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FF:10182-103D2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0