FF:10453-106G3: Difference between revisions

Latest revision as of 14:03, 3 June 2020

Name:	cord blood derived cell line:COBL-a 24h infection
Species:	Human (Homo sapiens)
Library ID:	CNhs11050
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	unclassifiable
cell line	COBL-a
company	NA
collaboration	Chieko Kai (University of Tokyo)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005000

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11050		CAGE		DRX007865		DRR008737

Accession ID Hg19

Library id		BAM		CTSS
CNhs11050		DRZ000162		DRZ001547

Accession ID Hg38

Library id		BAM		CTSS
CNhs11050		DRZ011512		DRZ012897

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.555
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0506
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0506
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0296
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.00864
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.209
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.208
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0.0506
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0.833
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.187
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.088
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.532
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.00509
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0343
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0392
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.442
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.00305
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0506
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0999
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11050

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.219
MA0003.1	MA0003.1	0.557
MA0004.1	MA0004.1	0.44
MA0006.1	MA0006.1	0.12
MA0007.1	MA0007.1	0.113
MA0009.1	MA0009.1	0.715
MA0014.1	MA0014.1	0.247
MA0017.1	MA0017.1	0.941
MA0018.2	MA0018.2	1.18543e-5
MA0019.1	MA0019.1	0.918
MA0024.1	MA0024.1	4.03536e-8
MA0025.1	MA0025.1	0.911
MA0027.1	MA0027.1	0.567
MA0028.1	MA0028.1	4.21054e-5
MA0029.1	MA0029.1	0.716
MA0030.1	MA0030.1	0.0441
MA0031.1	MA0031.1	0.0608
MA0035.2	MA0035.2	0.0682
MA0038.1	MA0038.1	0.00864
MA0039.2	MA0039.2	0.107
MA0040.1	MA0040.1	0.0202
MA0041.1	MA0041.1	0.165
MA0042.1	MA0042.1	0.201
MA0043.1	MA0043.1	0.0865
MA0046.1	MA0046.1	0.154
MA0047.2	MA0047.2	0.717
MA0048.1	MA0048.1	0.0976
MA0050.1	MA0050.1	0.00304
MA0051.1	MA0051.1	0.0118
MA0052.1	MA0052.1	0.00931
MA0055.1	MA0055.1	0.0234
MA0057.1	MA0057.1	0.425
MA0058.1	MA0058.1	0.331
MA0059.1	MA0059.1	0.0692
MA0060.1	MA0060.1	1.28919e-10
MA0061.1	MA0061.1	1.04911e-14
MA0062.2	MA0062.2	3.0252e-7
MA0065.2	MA0065.2	0.465
MA0066.1	MA0066.1	0.11
MA0067.1	MA0067.1	0.79
MA0068.1	MA0068.1	0.209
MA0069.1	MA0069.1	0.617
MA0070.1	MA0070.1	0.414
MA0071.1	MA0071.1	0.657
MA0072.1	MA0072.1	0.601
MA0073.1	MA0073.1	0.55
MA0074.1	MA0074.1	0.844
MA0076.1	MA0076.1	4.45981e-6
MA0077.1	MA0077.1	0.745
MA0078.1	MA0078.1	0.0917
MA0079.2	MA0079.2	0.28
MA0080.2	MA0080.2	0.84
MA0081.1	MA0081.1	0.787
MA0083.1	MA0083.1	0.671
MA0084.1	MA0084.1	0.761
MA0087.1	MA0087.1	0.205
MA0088.1	MA0088.1	0.108
MA0090.1	MA0090.1	3.6897e-5
MA0091.1	MA0091.1	0.013
MA0092.1	MA0092.1	0.217
MA0093.1	MA0093.1	0.305
MA0099.2	MA0099.2	0.00113
MA0100.1	MA0100.1	0.122
MA0101.1	MA0101.1	1.01006e-17
MA0102.2	MA0102.2	0.611
MA0103.1	MA0103.1	0.228
MA0104.2	MA0104.2	8.34751e-4
MA0105.1	MA0105.1	1.03043e-4
MA0106.1	MA0106.1	0.0405
MA0107.1	MA0107.1	9.54707e-23
MA0108.2	MA0108.2	0.00611
MA0111.1	MA0111.1	0.889
MA0112.2	MA0112.2	0.0203
MA0113.1	MA0113.1	0.0629
MA0114.1	MA0114.1	0.402
MA0115.1	MA0115.1	0.346
MA0116.1	MA0116.1	0.996
MA0117.1	MA0117.1	0.0355
MA0119.1	MA0119.1	0.103
MA0122.1	MA0122.1	0.256
MA0124.1	MA0124.1	0.399
MA0125.1	MA0125.1	0.202
MA0131.1	MA0131.1	0.0526
MA0135.1	MA0135.1	0.0197
MA0136.1	MA0136.1	0.146
MA0137.2	MA0137.2	0.0051
MA0138.2	MA0138.2	0.133
MA0139.1	MA0139.1	0.974
MA0140.1	MA0140.1	0.115
MA0141.1	MA0141.1	0.601
MA0142.1	MA0142.1	0.304
MA0143.1	MA0143.1	0.0286
MA0144.1	MA0144.1	0.955
MA0145.1	MA0145.1	0.00198
MA0146.1	MA0146.1	0.354
MA0147.1	MA0147.1	0.0013
MA0148.1	MA0148.1	0.87
MA0149.1	MA0149.1	0.328
MA0150.1	MA0150.1	0.201
MA0152.1	MA0152.1	0.217
MA0153.1	MA0153.1	1.85353e-4
MA0154.1	MA0154.1	0.714
MA0155.1	MA0155.1	0.204
MA0156.1	MA0156.1	0.035
MA0157.1	MA0157.1	0.105
MA0159.1	MA0159.1	0.53
MA0160.1	MA0160.1	0.0427
MA0162.1	MA0162.1	0.0404
MA0163.1	MA0163.1	0.197
MA0164.1	MA0164.1	0.748
MA0258.1	MA0258.1	0.239
MA0259.1	MA0259.1	0.13

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11050

Novel motif	Logo	P-value
1	1	0.974
10	10	0.135
100	100	0.183
101	101	0.216
102	102	0.954
103	103	0.43
104	104	0.752
105	105	0.536
106	106	0.0409
107	107	0.0289
108	108	0.492
109	109	0.978
11	11	0.606
110	110	0.177
111	111	0.474
112	112	0.617
113	113	0.7
114	114	0.237
115	115	0.629
116	116	0.45
117	117	0.51
118	118	0.423
119	119	0.433
12	12	0.52
120	120	0.978
121	121	0.893
122	122	0.276
123	123	0.152
124	124	0.373
125	125	0.602
126	126	0.935
127	127	0.977
128	128	0.0258
129	129	0.393
13	13	0.215
130	130	0.791
131	131	0.489
132	132	0.396
133	133	0.975
134	134	0.301
135	135	0.812
136	136	0.465
137	137	0.503
138	138	0.153
139	139	0.555
14	14	0.792
140	140	0.324
141	141	0.245
142	142	0.991
143	143	0.99
144	144	0.494
145	145	0.434
146	146	0.291
147	147	0.131
148	148	0.222
149	149	0.00691
15	15	0.708
150	150	0.465
151	151	0.319
152	152	0.0794
153	153	0.209
154	154	0.788
155	155	0.403
156	156	0.681
157	157	0.938
158	158	0.998
159	159	0.485
16	16	0.281
160	160	0.35
161	161	0.54
162	162	0.153
163	163	0.56
164	164	0.711
165	165	0.84
166	166	0.81
167	167	0.142
168	168	0.549
169	169	0.0292
17	17	0.339
18	18	0.731
19	19	0.0241
2	2	0.119
20	20	0.146
21	21	0.0244
22	22	0.0687
23	23	0.0171
24	24	0.221
25	25	0.55
26	26	0.682
27	27	0.285
28	28	0.63
29	29	0.487
3	3	0.588
30	30	0.0306
31	31	0.251
32	32	0.0319
33	33	0.861
34	34	0.226
35	35	0.789
36	36	0.0649
37	37	0.641
38	38	0.512
39	39	0.155
4	4	0.194
40	40	0.959
41	41	0.23
42	42	0.464
43	43	0.437
44	44	0.957
45	45	0.0705
46	46	0.595
47	47	0.955
48	48	0.859
49	49	0.706
5	5	0.162
50	50	0.731
51	51	0.625
52	52	0.0993
53	53	0.662
54	54	0.226
55	55	6.232e-4
56	56	0.792
57	57	0.971
58	58	0.709
59	59	0.148
6	6	0.974
60	60	0.234
61	61	0.58
62	62	0.965
63	63	0.385
64	64	0.692
65	65	0.246
66	66	0.0365
67	67	0.161
68	68	0.122
69	69	0.0524
7	7	0.748
70	70	0.123
71	71	0.495
72	72	0.271
73	73	0.123
74	74	0.494
75	75	0.769
76	76	0.268
77	77	0.00413
78	78	0.32
79	79	0.0223
8	8	0.489
80	80	0.377
81	81	0.571
82	82	0.106
83	83	0.262
84	84	0.358
85	85	0.0208
86	86	0.787
87	87	0.351
88	88	0.455
89	89	0.0224
9	9	0.18
90	90	0.886
91	91	0.478
92	92	0.234
93	93	0.634
94	94	0.979
95	95	0.467
96	96	0.797
97	97	0.0419
98	98	0.138
99	99	0.115

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11050

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000625 experimental infection sample
FF:0104053 umbilical cord blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000080 (circulating cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000178 (blood)
0002331 (umbilical cord)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0101035 (hematopoietic cell line sample)
0104053 (umbilical cord blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000178,UBERON:0002331,UBERON:0000926,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000478,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0000358,UBERON:0002390,UBERON:0004535,UBERON:0000307,UBERON:0002193,UBERON:0003081,UBERON:0001009,UBERON:0000091,UBERON:0000087,UBERON:0006603,UBERON:0007806,UBERON:0003061,UBERON:0008780,UBERON:0005728
+|DRA_sample_Accession=CAGE@SAMD00005000
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000988,CL:0000548,CL:0000012,CL:0002371,CL:0000004,CL:0000255,CL:0000080
+|accession_numbers=CAGE;DRX007865;DRR008737;DRZ000162;DRZ001547;DRZ011512;DRZ012897
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000178,UBERON:0002331,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000255,CL:0000080
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000625,FF:0101035,FF:0104053
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.70!500.93!IRF4;;chr11:129245736..129245758,+!p2@BARX2!2.17!146.79!BARX2;;chr12:48276548..48276564,-!p3@VDR!2.12!132.09!VDR;;chr3:189349162..189349207,+!p2@TP63!2.11!129.12!TP63;;chr13:28494130..28494168,+!p1@PDX1!2.07!115.53!PDX1;;chr3:111314186..111314204,-!p1@ZBED2!2.00!99.84!ZBED2;;chr1:212873084..212873137,-!p2@BATF3!1.98!93.54!BATF3;;chr17:38020392..38020477,-!p1@IKZF3!1.97!93.29!IKZF3;;chr14:75988831..75988847,+!p2@BATF!1.96!91.19!BATF;;chr12:103351444..103351461,+!p1@ASCL1!1.93!84.89!ASCL1;;chr17:46703687..46703740,-!p1@HOXB9!1.92!82.17!HOXB9;;chr8:11561684..11561751,+!p1@GATA4!1.91!80.44!GATA4;;chr17:45810594..45810608,+!p1@TBX21!1.90!77.85!TBX21;;chr2:231090471..231090504,+!p2@SP140!1.88!75.13!SP140;;chr14:75988771..75988826,+!p1@BATF!1.86!93.29!BATF;;chr10:64576105..64576133,-!p1@EGR2!1.79!120.97!EGR2;;chr18:55102598..55102623,+!p1@ONECUT2!1.79!60.92!ONECUT2;;chr4:57522513..57522548,-!p4@HOPX!1.76!56.35!HOPX;;chr4:57522476..57522500,-!p7@HOPX!1.74!53.87!HOPX;;chr6:135502501..135502546,+!p1@MYB!1.72!62.03!MYB;;chr6:137815524..137815537,-!p1@OLIG3!1.69!48.07!OLIG3;;chr1:212873162..212873188,-!p3@BATF3!1.69!47.70!BATF3;;chr11:129245526..129245553,+!p1@BARX2!1.66!44.48!BARX2;;chr6:135502408..135502459,+!p2@MYB!1.61!45.47!MYB;;chr9:77112244..77112262,+!p1@RORB!1.59!42.01!RORB;;chr17:40441354..40441410,+!p2@STAT5A!1.58!37.19!STAT5A;;chr15:60884706..60884743,-!p1@RORA!1.52!159.27!RORA;;chr11:31832658..31832681,-!p1@PAX6!1.52!32.00!PAX6;;chr7:50344289..50344323,+!p1@IKZF1!1.52!31.88!IKZF1;;chr2:231090433..231090469,+!p1@SP140!1.51!31.51!SP140;;chr2:176969228..176969260,+!p1@HOXD11!1.50!30.27!HOXD11;;chr1:3569072..3569093,+!p1@TP73!1.49!29.78!TP73;;chr20:50159198..50159299,-!p1@NFATC2!1.48!42.51!NFATC2;;chr1:212873061..212873080,-!p4@BATF3!1.47!28.42!BATF3;;chr2:45168875..45168916,+!p1@SIX3!1.46!27.55!SIX3;;chr19:36204309..36204335,+!p1@ZBTB32!1.45!27.06!ZBTB32;;chr17:8027418..8027432,-!p1@HES7!1.44!26.44!HES7;;chr1:212873267..212873332,-!p1@BATF3!1.43!34.60!BATF3;;chr10:104155659..104155676,+!p4@NFKB2!1.42!31.76!NFKB2;;chr17:40440359..40440386,+!p4@STAT5A!1.42!25.58!STAT5A;;chr18:55102628..55102646,+!p2@ONECUT2!1.42!25.45!ONECUT2;;chr3:141087393..141087426,+!p3@ZBTB38!1.39!90.33!ZBTB38;;chr1:201979703..201979721,+!p2@ELF3!1.39!23.48!ELF3;;chr13:28494109..28494122,+!p2@PDX1!1.38!23.23!PDX1;;chr2:185463247..185463263,+!p1@ZNF804A!1.35!37.44!ZNF804A;;chr3:141087339..141087387,+!p2@ZBTB38!1.34!205.86!ZBTB38;;chr3:181429741..181429767,+!p2@SOX2!1.34!20.88!SOX2;;chr6:91006518..91006570,-!p1@BACH2!1.33!46.71!BACH2;;chr1:212873200..212873230,-!p5@BATF3!1.33!20.51!BATF3;;chr8:128747846..128747860,+!p15@MYC!1.33!20.39!MYC;;chr10:64576035..64576046,-!p2@EGR2!1.33!20.39!EGR2;;chr1:25291475..25291511,-!p2@RUNX3!1.30!18.78!RUNX3;;chr20:6748325..6748352,+!p1@BMP2!1.28!26.07!BMP2;;chr3:181429704..181429722,+!p1@SOX2!1.28!18.16!SOX2;;chr17:46703436..46703460,-!p7@HOXB9!1.27!17.67!HOXB9;;chr6:36355360..36355392,-!p4@ETV7!1.27!17.55!ETV7;;chr4:144435112..144435176,+!p3@SMARCA5!1.26!34.97!SMARCA5;;chr3:111314230..111314241,-!p2@ZBED2!1.26!17.18!ZBED2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.25!23.72!NFKBIZ;;chr6:106546808..106546833,+!p3@PRDM1!1.25!21.13!PRDM1;;chr19:45252008..45252024,+!p2@BCL3!1.24!54.00!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!1.24!16.31!IKZF1;;chr19:47523058..47523114,+!p1@NPAS1!1.22!15.57!NPAS1;;chr2:45168834..45168847,+!p2@SIX3!1.22!15.45!SIX3;;chr13:28494375..28494416,+!p4@PDX1!1.21!15.20!PDX1;;chr4:26322267..26322334,+!p3@RBPJ!1.20!35.83!RBPJ;;chr1:158978768..158978800,+!p8@IFI16!1.19!14.46!IFI16;;chr1:25256756..25256774,-!p1@RUNX3!1.16!25.08!RUNX3;;chr9:2015335..2015370,+!p1@SMARCA2!1.15!158.66!SMARCA2;;chr12:103352277..103352324,+!p2@ASCL1!1.15!13.10!ASCL1;;chr12:52445218..52445237,+!p1@NR4A1!1.14!161.25!NR4A1;;chr21:47063625..47063658,+!p1@PCBP3!1.14!55.36!PCBP3;;chr2:176969179..176969226,+!p2@HOXD11!1.14!12.85!HOXD11;;chr3:141747950..141748004,-!p7@TFDP2!1.14!12.85!TFDP2;;chr6:135502472..135502489,+!p3@MYB!1.14!12.85!MYB;;chr3:189348969..189349018,+!p4@TP63!1.14!12.73!TP63;;chr3:141747459..141747475,-!p1@TFDP2!1.13!103.18!TFDP2;;chr19:12203100..12203132,+!p1@ZNF788!1.12!24.47!ZNF788;;chr2:231090344..231090361,-!p3@SP110!1.12!12.11!SP110;;chr13:28494180..28494196,+!p3@PDX1!1.11!11.99!PDX1;;chr17:40440446..40440464,+!p5@STAT5A!1.11!11.86!STAT5A;;chr6:144385698..144385742,-!p2@PLAGL1!1.10!13.96!PLAGL1;;chr5:1882184..1882203,-!p4@IRX4!1.10!11.62!IRX4;;chr2:61108878..61108891,+!p5@REL!1.10!11.62!REL;;chr18:77155922..77155939,+!p1@NFATC1!1.09!31.14!NFATC1;;chr12:54393880..54393962,+!p1@HOXC9!1.08!11.00!HOXC9;;chr19:19976683..19976709,+!p1@ZNF253!1.07!48.19!ZNF253;;chr2:45168997..45169020,+!p4@SIX3!1.06!10.50!SIX3;;chr1:27023752..27023799,+!p4@ARID1A!1.05!13.47!ARID1A;;chr1:201979743..201979762,+!p1@ELF3!1.05!10.26!ELF3;;chr6:137815425..137815444,-!p2@OLIG3!1.05!10.26!OLIG3;;chr7:50348268..50348366,+!p4@IKZF1!1.05!10.26!IKZF1;;chr11:61520075.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@@ Line 36: / Line 40: @@
 |fonse_treatment_closure=FF:0000625,FF:10453-106G3
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@@ Line 44: / Line 59: @@
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 |sample_cell_line=COBL-a
@@ Line 80: / Line 99: @@
 |top_motifs=HOX{A6,A7,B6,B7}:1.95160735081;NFKB1_REL_RELA:1.78976138304;NFY{A,B,C}:1.71043348545;TLX2:1.65231652568;YY1:1.63149742272;E2F1..5:1.60626598453;HOXA9_MEIS1:1.5225882162;FOXP3:1.43849035879;NKX2-1,4:1.42110496741;CREB1:1.30885092753;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.30586523448;FOXP1:1.27253427556;GFI1:1.18934222907;BREu{core}:1.17356155303;RBPJ:1.15181441435;CRX:1.14869180682;MYB:1.12883380461;ATF4:1.12346171495;PAX4:1.08893212578;STAT5{A,B}:1.04825517698;ELF1,2,4:0.996359661605;POU3F1..4:0.996165482484;TEF:0.980781046476;AIRE:0.942184882829;RORA:0.939487306097;NRF1:0.933716835112;HES1:0.933237454587;STAT2,4,6:0.921455064601;ELK1,4_GABP{A,B1}:0.915065192711;TFDP1:0.793759290751;PAX8:0.764058722328;DBP:0.694176608949;ZFP161:0.689376972435;NANOG:0.681313237726;ONECUT1,2:0.650359518032;MYOD1:0.645227405265;PBX1:0.635680749845;POU2F1..3:0.627701872836;POU1F1:0.606321865991;AHR_ARNT_ARNT2:0.605097649567;PITX1..3:0.600606830952;RFX2..5_RFXANK_RFXAP:0.581272505699;ZNF143:0.553697017101;CDX1,2,4:0.545774486069;ATF5_CREB3:0.54560254748;LEF1_TCF7_TCF7L1,2:0.53104050542;HSF1,2:0.512742791167;RUNX1..3:0.504789572634;ESRRA:0.492094150523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.464347335362;ADNP_IRX_SIX_ZHX:0.423093072083;TGIF1:0.422201021249;ATF6:0.393994788216;FOXQ1:0.373637151902;FOXM1:0.366424921167;GCM1,2:0.353738670475;SOX{8,9,10}:0.335910325236;EVI1:0.331501602093;CUX2:0.327639596065;NFE2L1:0.313051418375;PDX1:0.288499894493;SOX17:0.282794525138;SPI1:0.254334760139;PAX1,9:0.254176442402;ESR1:0.244820536112;IRF1,2:0.236500226605;STAT1,3:0.221567248993;bHLH_family:0.22066913116;ZBTB16:0.219378197312;NKX6-1,2:0.171108377697;BPTF:0.154737534057;JUN:0.147592276583;POU5F1:0.139304923288;HIF1A:0.120147284089;FOXN1:0.113416278014;EGR1..3:0.0934498360426;PAX3,7:0.0803791686062;RXR{A,B,G}:0.0619151277101;TP53:0.0603944898272;GATA6:0.0533511472148;ZNF148:-0.00119186812144;TOPORS:-0.00861797408232;MTE{core}:-0.0165116524992;MYFfamily:-0.0587416013998;CEBPA,B_DDIT3:-0.0861517789988;MAFB:-0.11127764544;RREB1:-0.113205178379;ATF2:-0.121917275593;SOX5:-0.131789283767;HIC1:-0.139446999195;SPIB:-0.160119500433;PAX6:-0.161246618701;HNF4A_NR2F1,2:-0.170653642306;ETS1,2:-0.171102838219;RFX1:-0.186285629046;REST:-0.189350704385;NR5A1,2:-0.190458401226;TFAP2{A,C}:-0.194917014746;HOX{A4,D4}:-0.21856932423;POU6F1:-0.23054458493;HNF1A:-0.250523290823;XBP1:-0.258844627954;FOS_FOS{B,L1}_JUN{B,D}:-0.261017220053;FOSL2:-0.266379364557;NKX3-1:-0.268381768329;LHX3,4:-0.27443704991;PRRX1,2:-0.275006346035;PAX5:-0.27789311466;SOX2:-0.282662961783;NFE2:-0.286926307153;SNAI1..3:-0.300398288897;FOX{I1,J2}:-0.301527640498;MED-1{core}:-0.320283842826;FOXA2:-0.328168956076;ZIC1..3:-0.340397855632;TFAP2B:-0.349534372816;NFATC1..3:-0.35174797446;GFI1B:-0.359998713402;IKZF2:-0.360324983581;FOX{F1,F2,J1}:-0.362422461529;VSX1,2:-0.370178807798;SRF:-0.373584053649;NR1H4:-0.396720474359;PATZ1:-0.399287598425;BACH2:-0.447026733451;MYBL2:-0.452595482521;MEF2{A,B,C,D}:-0.46240830851;ZEB1:-0.468430835653;NKX3-2:-0.490001562896;IRF7:-0.495457324786;OCT4_SOX2{dimer}:-0.505924121605;FOXD3:-0.507735205098;PAX2:-0.511317986351;DMAP1_NCOR{1,2}_SMARC:-0.515878293646;LMO2:-0.517888252514;SREBF1,2:-0.522503276316;UFEwm:-0.52455188393;AR:-0.52685841904;HLF:-0.532085925305;ARID5B:-0.535389261397;EBF1:-0.55170421021;ZNF423:-0.573750895015;NFE2L2:-0.582655815868;ZNF384:-0.58546343138;IKZF1:-0.608207559892;NR6A1:-0.64491218166;NKX2-3_NKX2-5:-0.686130474285;HBP1_HMGB_SSRP1_UBTF:-0.702887065524;MZF1:-0.742705263981;NFIL3:-0.749730211375;PRDM1:-0.764577159959;RXRA_VDR{dimer}:-0.777949383642;XCPE1{core}:-0.806047915106;TBX4,5:-0.809737945842;TFAP4:-0.83551350686;KLF4:-0.851919621638;GZF1:-0.853114903157;TBP:-0.860124225925;GATA4:-0.875421960847;NHLH1,2:-0.887682677064;ALX1:-0.888956993879;HMX1:-0.890841501246;HOX{A5,B5}:-0.928255181644;MTF1:-0.947010554572;CDC5L:-0.955598640817;HAND1,2:-0.994508458566;NANOG{mouse}:-1.02900199565;EP300:-1.04124636261;NFIX:-1.05782657468;HMGA1,2:-1.10262030991;GTF2A1,2:-1.16292621691;TEAD1:-1.1847690354;EN1,2:-1.1863017014;NKX2-2,8:-1.19775048455;ZBTB6:-1.19960778557;GTF2I:-1.20504929641;ZNF238:-1.26855668311;FOX{D1,D2}:-1.26963644608;FOXL1:-1.30252367256;MAZ:-1.30794685899;TAL1_TCF{3,4,12}:-1.43396630346;PPARG:-1.43792692053;TFCP2:-1.49013205553;FOXO1,3,4:-1.49612892049;NR3C1:-1.51308312489;SP1:-1.54181080401;TLX1..3_NFIC{dimer}:-1.55665692089;GLI1..3:-1.57277115956;SMAD1..7,9:-1.61905357837;ALX4:-1.69054832744;SPZ1:-2.24394521222;T:-2.62617095875
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10453-106G3;search_select_hide=table117:FF:10453-106G3
 }}

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FF:10453-106G3: Difference between revisions

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Latest revision as of 14:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0