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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0003103,UBERON:0009569,UBERON:0005291,UBERON:0000489,UBERON:0005177,UBERON:0003104,UBERON:0005172,UBERON:0003918,UBERON:0006598,UBERON:0005173,UBERON:0002532,UBERON:0001008,UBERON:0002417,UBERON:0000916,UBERON:0009142,UBERON:0006603,UBERON:0005095,UBERON:0007687
|DRA_sample_Accession=CAGE@SAMD00005489
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0002371,CL:0000004,CL:0000255,CL:1000497,CL:0002518
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005489
|HumanCAGEScanFiles=NCig10053;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.NCig10053.10411-106B6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.NCig10053.10411-106B6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.NCig10053.10411-106B6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.NCig10053.10411-106B6.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX007990;DRR008862;DRZ000287;DRZ001672;DRZ011637;DRZ013022
|accession_numbers_RNASeq=RNA-Seq;DRX057119;DRR062878;DRZ007954
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100067,FF:0101120,FF:0103192,FF:0100383,FF:0102403
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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3:5021268..5021282,+!p4@BHLHE40!0.69!8.64!BHLHE40;;chr3:170076223..170076242,+!p6@SKIL!0.69!4.53!SKIL;;chr3:69812731..69812742,+!p19@MITF!0.69!3.89!MITF;;chr19:11849700..11849803,-!p1@ZNF823!0.68!20.73!ZNF823;;chr8:77593474..77593612,+!p1@ZFHX4!0.68!18.14!ZFHX4;;chr8:60031682..60031710,-!p2@TOX!0.68!6.48!TOX;;chr3:187463248..187463264,-!p1@BCL6!0.67!92.20!BCL6;;chr3:193853927..193853944,+!p1@HES1!0.66!136.47!HES1;;chr11:65667884..65667895,-!p2@FOSL1!0.66!15.76!FOSL1;;chrX:66763815..66763854,+!p2@AR!0.66!4.97!AR;;chr3:32023232..32023273,+!p1@ZNF860!0.65!5.18!ZNF860;;chr3:69812877..69812886,+!p22@MITF!0.65!3.45!MITF;;chr13:37494275..37494304,-!p2@SMAD9!0.65!3.45!SMAD9;;chr2:28615716..28615733,+!p1@FOSL2!0.64!189.15!FOSL2;;chr21:36421535..36421610,-!p2@RUNX1!0.64!13.60!RUNX1;;chr11:64764435..64764449,-!p1@BATF2!0.64!4.97!BATF2;;chr5:124080203..124080258,-!p5@ZNF608!0.64!3.89!ZNF608;;chr4:87857474..87857489,+!p7@AFF1!0.63!6.26!AFF1;;chr15:80696703..80696754,+!p1@ARNT2!0.63!4.53!ARNT2;;chr16:54319010..54319041,-!p8@IRX3!0.63!3.24!IRX3;;chr17:36104873..36104903,-!p3@HNF1B!0.63!3.24!HNF1B;;chr1:199996733..199996781,+!p1@NR5A2!0.63!3.24!NR5A2;;chr13:41593425..41593480,-!p1@ELF1!0.61!23.32!ELF1;;chr6:19837592..19837621,+!p1@ID4!0.61!22.46!ID4;;chr4:87857491..87857519,+!p10@AFF1!0.61!4.53!AFF1;;chr5:124082279..124082319,-!p3@ZNF608!0.61!3.89!ZNF608;;chr17:46622229..46622257,-!p6@HOXB2!0.61!3.67!HOXB2;;chr15:67418119..67418162,+!p5@SMAD3!0.61!3.45!SMAD3;;chr3:150126759..150126784,+!p2@TSC22D2!0.60!15.98!TSC22D2;;chr2:46524897..46524911,+!p2@EPAS1!0.60!9.50!EPAS1;;chr7:128577972..128578047,+!p1@IRF5!0.60!5.18!IRF5;;chr11:129245736..129245758,+!p2@BARX2!0.60!3.02!BARX2;;chrY:21906761..21906810,-!p2@KDM5D!0.60!3.02!KDM5D;;chr9:126774018..126774055,+!p1@LHX2!0.60!3.02!LHX2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.59!185.27!NFKBIZ;;chr20:6748325..6748352,+!p1@BMP2!0.59!4.53!BMP2;;chr11:706938..707008,-!p3@DEAF1!0.59!3.89!DEAF1;;chr12:77459306..77459365,-!p1@E2F7!0.58!42.75!E2F7;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.58!34.12!GLIS2;;chr17:46655730..46655791,-!p1@HOXB4!0.58!7.99!HOXB4;;chr16:54320675..54320715,-!p1@IRX3!0.58!6.91!IRX3;;chr19:52674898..52674931,-!p3@ZNF836!0.58!6.91!ZNF836;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.32!HOXB7;;chr17:46687959..46688007,-!p2@HOXB7!0.58!4.10!HOXB7;;chr7:101917447..101917479,+!p4@CUX1!0.58!2.81!CUX1;;chr7:101917482..101917507,+!p6@CUX1!0.58!2.81!CUX1;;chr7:1577076..1577095,+!p5@MAFK!0.58!2.81!MAFK;;chr7:27183291..27183324,-!p1@HOXA5!0.58!2.81!HOXA5;;chr8:76319850..76319870,+!p4@HNF4G!0.58!2.81!HNF4G;;chr2:177016272..177016286,+!p2@HOXD4!0.58!2.81!HOXD4;;chr1:37940170..37940190,+!p1@ZC3H12A!0.57!41.67!ZC3H12A;;chr1:935467..935484,-!p1@HES4!0.57!14.47!HES4;;chr8:67525473..67525518,-!p1@MYBL1!0.57!7.13!MYBL1;;chr7:113726357..113726443,+!p1@FOXP2!0.57!5.18!FOXP2;;chr16:54320617..54320643,-!p3@IRX3!0.57!3.67!IRX3;;chr6:10412392..10412409,-!p4@TFAP2A!0.57!3.24!TFAP2A;;chr16:54964740..54964789,+!p1@IRX5!0.56!4.10!IRX5;;chr3:169381420..169381535,-!p1@MECOM!0.56!3.24!MECOM;;chr3:5022272..5022321,+!p7@BHLHE40!0.56!2.59!BHLHE40;;chr15:57511589..57511608,+!p4@TCF12!0.56!2.59!TCF12;;chr16:51185318..51185348,-!p2@SALL1!0.56!2.59!SALL1;;chr19:20278043..20278054,+!p2@ZNF486!0.56!2.59!ZNF486;;chr5:142780168..142780186,-!p23@NR3C1!0.56!2.59!NR3C1;;chr6:100912785..100912822,-!p1@SIM1!0.56!2.59!SIM1;;chr6:28321909..28321965,-!p3@ZNF323!0.56!2.59!ZNF323;;chr7:27196267..27196311,-!p1@HOXA7!0.56!2.59!HOXA7;;chr8:40755333..40755352,-!p1@ZMAT4!0.56!2.59!ZMAT4;;chr10:102495147..102495159,+!p4@PAX2!0.56!2.59!PAX2;;chr3:5021191..5021202,+!p3@BHLHE40!0.55!7.99!BHLHE40;;chr20:31350184..31350200,+!p1@DNMT3B!0.55!6.05!DNMT3B;;chrX:56258811..56258838,+!p2@KLF8!0.55!3.67!KLF8;;chr1:212782094..212782109,+!p1@ATF3!0.54!85.29!ATF3;;chr3:12329358..12329393,+!p3@PPARG!0.54!7.13!PPARG;;chr11:65667846..65667868,-!p1@FOSL1!0.53!81.62!FOSL1;;chr7:137686824..137686865,-!p2@CREB3L2!0.53!38.65!CREB3L2;;chr1:151032860..151032918,+!p1@MLLT11!0.53!36.49!MLLT11;;chr19:20278012..20278034,+!p1@ZNF486!0.53!25.26!ZNF486;;chr12:27485823..27485868,+!p2@ARNTL2!0.53!12.09!ARNTL2;;chr1:247171347..247171366,-!p2@ZNF695!0.53!4.97!ZNF695;;chr12:125002861..125002894,-!p7@NCOR2!0.53!3.89!NCOR2;;chr12:26277929..26277955,-!p3@BHLHE41!0.53!3.67!BHLHE41;;chr16:54320101..54320125,-!p4@IRX3!0.53!3.67!IRX3;;chr16:54320280..54320291,-!p9@IRX3!0.53!2.38!IRX3;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.53!2.38!ZNF676;;chr2:63277948..63277974,+!p1@OTX1!0.53!2.38!OTX1;;chr3:69812701..69812729,+!p9@MITF!0.53!2.38!MITF;;chr11:19262421..19262455,-!p3@E2F8!0.53!2.38!E2F8;;chr7:28452130..28452154,+!p10@CREB5!0.53!2.38!CREB5;;chr8:77593448..77593471,+!p2@ZFHX4!0.53!2.38!ZFHX4;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.52!13.17!TAL1;;chr17:38498594..38498661,+!p2@RARA!0.52!9.50!RARA;;chr1:10754477..10754517,-!p1@CASZ1!0.52!4.32!CASZ1;;chr1:935496..935509,-!p3@HES4!0.52!3.89!HES4;;chr16:54320646..54320672,-!p2@IRX3!0.52!3.89!IRX3;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055,-!p1@BOLA3!0.17!59.81!BOLA3;;chr8:103667935..103667960,-!p1@KLF10!0.17!59.38!KLF10;;chr10:63661437..63661465,+!p2@ARID5B!0.17!25.26!ARID5B;;chr3:169491171..169491205,+!p1@MYNN!0.17!22.89!MYNN;;chr10:63809106..63809127,+!p1@ARID5B!0.17!17.49!ARID5B;;chr16:75182376..75182458,+!p1@ZFP1!0.17!13.39!ZFP1;;chr3:141747459..141747475,-!p1@TFDP2!0.17!10.36!TFDP2;;chr19:37157713..37157760,-!p1@ZNF461!0.17!6.91!ZNF461;;chr5:56247935..56247959,-!p1@MIER3!0.17!6.48!MIER3;;chr10:31320777..31320834,-!p1@ZNF438!0.17!6.05!ZNF438;;chr12:57400261..57400344,-!p1@ZBTB39!0.17!5.61!ZBTB39;;chr10:77161533..77161546,-!p2@ZNF503!0.17!4.53!ZNF503;;chr1:149871114..149871134,+!p3@BOLA1!0.17!4.53!BOLA1;;chr18:45456800..45456886,-!p4@SMAD2!0.17!4.32!SMAD2;;chr19:12721616..12721640,-!p2@ZNF490!0.17!3.89!ZNF490;;chr1:40997285..40997352,+!p1@ZNF684!0.17!3.89!ZNF684;;chr17:4890695..4890773,-!p2@CAMTA2!0.17!3.45!CAMTA2;;chr12:72057747..72057854,+!p4@THAP2!0.17!2.81!THAP2;;chr6:45389791..45389832,+!p3@RUNX2!0.17!2.59!RUNX2;;chr16:3185125..3185173,+!p1@ZNF213!0.17!2.59!ZNF213;;chr10:38146994..38147039,-!p2@ZNF248!0.17!2.38!ZNF248;;chr5:132299008..132299026,-!p5@AFF4!0.17!2.16!AFF4;;chr5:76383133..76383186,-!p2@ZBED3!0.17!1.94!ZBED3;;chr3:150126904..150126958,+!p7@TSC22D2!0.17!1.51!TSC22D2;;chr17:47439354..47439383,-!p3@ZNF652!0.17!1.30!ZNF652;;chr15:96875041..96875052,+!p17@NR2F2!0.17!1.08!NR2F2;;chr4:146436110..146436135,+!p6@SMAD1!0.17!1.08!SMAD1;;chr5:142782823..142782854,-!p3@NR3C1!0.17!1.08!NR3C1;;chr8:72756213..72756243,-!p5@MSC!0.17!0.86!MSC;;chr16:4366005..4366016,+!p@chr16:4366005..4366016,+!0.17!0.86!GLIS2;;chr19:49139477..49139552,-!p4@DBP!0.17!0.86!DBP;;chr1:41157641..41157665,+!p7@NFYC!0.17!0.86!NFYC;;chr20:50179368..50179392,-!p2@NFATC2!0.17!0.86!NFATC2;;chr13:46543346..46543367,-!p9@ZC3H13!0.17!0.86!ZC3H13;;chr12:27485733..27485742,+!p5@ARNTL2!0.17!0.65!ARNTL2;;chr14:74206010..74206013,-!p13@C14orf43!0.17!0.65!C14orf43;;chr19:12551849..12551868,-!p4@ZNF443!0.17!0.65!ZNF443;;chr9:99180597..99180614,-!p3@ZNF367!0.17!0.65!ZNF367;;chr5:43121586..43121601,+!p10@ZNF131!0.17!0.65!ZNF131;;chr7:1577111..1577132,+!p4@MAFK!0.17!0.65!MAFK;;chr7:77428248..77428259,+!p5@PHTF2!0.17!0.65!PHTF2;;chr1:23696348..23696363,-!p4@ZNF436!0.17!0.65!ZNF436;;chr1:61548118..61548129,+!p9@NFIA!0.17!0.65!NFIA;;chr1:149858461..149858479,+!p1@BOLA1!0.16!513.69!BOLA1;;chr20:46130619..46130664,+!p1@NCOA3!0.16!35.20!NCOA3;;chr1:40627038..40627071,+!p1@RLF!0.16!16.41!RLF;;chr19:9695195..9695221,-!p2@ZNF121!0.16!14.25!ZNF121;;chr14:62162258..62162269,+!p2@HIF1A!0.16!11.88!HIF1A;;chr21:44394645..44394737,+!p1@PKNOX1!0.16!10.15!PKNOX1;;chr19:56110859..56110917,-!p1@FIZ1!0.16!7.77!FIZ1;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.16!6.69!ZNF10;;chr9:14314131..14314147,-!p2@NFIB!0.16!6.48!NFIB;;chr7:99070499..99070523,+!p1@ZNF789!0.16!6.26!ZNF789;;chr15:57025759..57025811,-!p2@ZNF280D!0.16!6.05!ZNF280D;;chr10:97889784..97889827,+!p1@ZNF518A!0.16!5.61!ZNF518A;;chr19:57752022..57752108,+!p1@ZNF805!0.16!4.97!ZNF805;;chr10:35415978..35416050,+!p5@CREM!0.16!4.75!CREM;;chr1:117602932..117602973,+!p1@TTF2!0.16!4.10!TTF2;;chr3:169490562..169490605,+!p2@MYNN!0.16!3.45!MYNN;;chr9:20622444..20622468,-!p2@MLLT3!0.16!3.45!MLLT3;;chr19:44598534..44598559,+!p2@ZNF224!0.16!3.24!ZNF224;;chrX:106959661..106959763,-!p4@TSC22D3!0.16!3.02!TSC22D3;;chr2:148778973..148779035,+!p3@MBD5!0.16!2.59!MBD5;;chr15:67357992..67358009,+!p3@SMAD3!0.16!2.38!SMAD3;;chr1:151032833..151032850,+!p3@MLLT11!0.16!2.16!MLLT11;;chr1:211432887..211432903,+!p4@RCOR3!0.16!2.16!RCOR3;;chr19:12405689..12405707,-!p3@ZNF44!0.16!1.73!ZNF44;;chr1:221052776..221052799,+!p1@HLX!0.16!1.51!HLX;;chr5:142783792..142783842,-!p5@NR3C1!0.16!1.51!NR3C1;;chr9:14314106..14314119,-!p5@NFIB!0.16!1.51!NFIB;;chr3:107244229..107244254,+!p3@BBX!0.16!1.30!BBX;;chr3:150126101..150126118,+!p6@TSC22D2!0.16!1.30!TSC22D2;;
|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
|fonse_cell_line=FF:0100067,FF:0101120
|fonse_cell_line=FF:0100067,FF:0101120
|fonse_cell_line_closure=FF:0100067,FF:0101120
|fonse_cell_line_closure=FF:0100067,FF:0101120
Line 36: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.CNhs10729.10411-106B6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.CNhs10729.10411-106B6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.CNhs10729.10411-106B6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.CNhs10729.10411-106B6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.CNhs10729.10411-106B6.hg38.nobarcode.ctss.bed.gz
|id=FF:10411-106B6
|id=FF:10411-106B6
|is_a=EFO:0002091;;FF:0000210;;FF:0102403
|is_a=EFO:0002091;;FF:0000210;;FF:0102403
|is_obsolete=
|is_obsolete=
|library_id=CNhs10729
|library_id_phase_based=2:CNhs10729
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10411
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10411
|name=renal cell carcinoma cell line:OS-RC-2
|name=renal cell carcinoma cell line:OS-RC-2
|namespace=FANTOM5
|namespace=FANTOM5
Line 44: Line 63:
|profile_cagescan=NCig10053,,,
|profile_cagescan=NCig10053,,,
|profile_hcage=CNhs10729,LSID691,release008,COMPLETED
|profile_hcage=CNhs10729,LSID691,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 58: Line 80:
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|sample_cell_line=OS-RC-2
Line 80: Line 104:
|top_motifs=HNF1A:2.77374563956;DBP:1.53729215458;ALX1:1.4667558049;POU1F1:1.44369541146;RXRA_VDR{dimer}:1.42793229015;NKX3-2:1.10871090675;EP300:1.08632034165;XCPE1{core}:1.05989783762;NR6A1:1.03599500868;HAND1,2:0.960202219167;LHX3,4:0.941735812207;PBX1:0.910153566186;TEAD1:0.891400085128;NKX2-1,4:0.873924911996;GFI1:0.8301351031;STAT5{A,B}:0.808829577068;ADNP_IRX_SIX_ZHX:0.793296744177;TBX4,5:0.78835840352;NFY{A,B,C}:0.770702137103;SP1:0.737487740549;POU3F1..4:0.69275132938;E2F1..5:0.662519691019;ARID5B:0.662127917904;HNF4A_NR2F1,2:0.655604384983;TP53:0.635808443604;NKX2-3_NKX2-5:0.627192041123;TLX1..3_NFIC{dimer}:0.622268617744;TFCP2:0.612099823781;POU2F1..3:0.6028439126;FOXQ1:0.562689409342;NFE2:0.559233044928;LMO2:0.544053470391;CDC5L:0.535815303994;ZNF423:0.51708386652;HIF1A:0.516283837439;ZBTB16:0.50741301536;NFE2L2:0.495387509801;ZBTB6:0.482498147556;BACH2:0.448704233012;ELK1,4_GABP{A,B1}:0.425828883298;HSF1,2:0.42369888871;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.403559270711;SNAI1..3:0.380066715945;EBF1:0.377238989231;CUX2:0.335500398014;IRF7:0.323738719427;FOX{F1,F2,J1}:0.276275874248;STAT1,3:0.274588157833;GFI1B:0.272570889352;FOS_FOS{B,L1}_JUN{B,D}:0.253253089093;AHR_ARNT_ARNT2:0.241014660125;FOSL2:0.236722181031;NRF1:0.234616138264;EVI1:0.231154011965;ZNF143:0.226303987921;MAFB:0.226078723874;ATF2:0.222140113504;MYOD1:0.21667123084;NR3C1:0.215695370663;FOXL1:0.206528842013;SMAD1..7,9:0.190517860527;PITX1..3:0.180842499125;RBPJ:0.155037002864;ZEB1:0.138748604335;RXR{A,B,G}:0.133868546545;NFKB1_REL_RELA:0.123351306365;POU5F1:0.116601806523;HOXA9_MEIS1:0.112908362438;HOX{A5,B5}:0.107183726729;VSX1,2:0.0806057223972;ZNF148:0.0780581391554;PAX4:0.0770012521885;MYB:0.0751739993779;CDX1,2,4:0.0723426227638;STAT2,4,6:0.0720558953643;RFX1:0.0596782829031;NKX2-2,8:0.0585110185816;PAX5:0.0360935586838;ONECUT1,2:0.0295018321385;ALX4:0.0105269643218;PAX1,9:0.00660463152936;IKZF1:-0.00165486375716;PAX6:-0.0339024142364;IRF1,2:-0.0339602768542;MYBL2:-0.034078831533;PRRX1,2:-0.0598043967197;ESRRA:-0.0755765275166;CEBPA,B_DDIT3:-0.0808758276233;PAX8:-0.0818855468103;GTF2I:-0.0845121225477;MTE{core}:-0.1031262404;PATZ1:-0.114873281788;HIC1:-0.135719730281;SRF:-0.144223119174;ELF1,2,4:-0.148162316397;NFIX:-0.156975097241;NFATC1..3:-0.15973818541;RFX2..5_RFXANK_RFXAP:-0.186389519987;MEF2{A,B,C,D}:-0.188808137969;ATF6:-0.195186533223;UFEwm:-0.2035500003;MAZ:-0.207284025963;TBP:-0.218048828088;NANOG:-0.223757476088;GLI1..3:-0.238781961834;XBP1:-0.277777006841;TEF:-0.286294403036;HES1:-0.287264014579;SOX2:-0.288515308603;GTF2A1,2:-0.299960302765;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.302972020362;ETS1,2:-0.307660344885;TFDP1:-0.32134669281;MZF1:-0.327663208597;ATF5_CREB3:-0.332505767035;PPARG:-0.350899732522;TFAP2B:-0.367055205155;POU6F1:-0.367234262656;GATA6:-0.375920432601;HLF:-0.388177509512;TAL1_TCF{3,4,12}:-0.391198185295;RUNX1..3:-0.396499212586;YY1:-0.433428876192;MED-1{core}:-0.434666149436;TFAP2{A,C}:-0.439884735837;NANOG{mouse}:-0.440414008484;bHLH_family:-0.453933228978;PDX1:-0.471532195663;SPIB:-0.475248801217;NKX6-1,2:-0.475773160592;FOXN1:-0.492019926206;NR1H4:-0.492628008778;PRDM1:-0.493145347682;FOXM1:-0.512508052937;EGR1..3:-0.527629018779;LEF1_TCF7_TCF7L1,2:-0.532936952683;NHLH1,2:-0.538215442659;FOX{D1,D2}:-0.544240991984;RREB1:-0.545001828687;KLF4:-0.549580629188;NKX3-1:-0.552604444225;BREu{core}:-0.565593049249;TGIF1:-0.567234222334;SPI1:-0.576396970314;MYFfamily:-0.598580638328;AR:-0.606521321436;TLX2:-0.61484606679;HOX{A6,A7,B6,B7}:-0.621320844761;FOXA2:-0.636960642724;REST:-0.63706168491;SOX17:-0.638667635595;ZFP161:-0.641461731701;CRX:-0.644029780019;NFIL3:-0.646611649287;FOXD3:-0.654245226944;NFE2L1:-0.677242584757;FOXP3:-0.681370280273;OCT4_SOX2{dimer}:-0.697350266163;ZIC1..3:-0.714465266987;AIRE:-0.724481069122;FOXP1:-0.732537605799;MTF1:-0.737601038338;HMX1:-0.751446216713;TOPORS:-0.776116825771;NR5A1,2:-0.780693744654;HMGA1,2:-0.792625537725;GZF1:-0.806452045195;PAX2:-0.82207428464;ATF4:-0.828731064654;BPTF:-0.862707211938;GCM1,2:-0.871892578462;PAX3,7:-0.897355093146;ESR1:-0.897965666844;SREBF1,2:-0.931703579512;ZNF384:-0.942258147715;T:-0.961782788036;SOX{8,9,10}:-0.970995329411;CREB1:-1.00734695151;HOX{A4,D4}:-1.00946846121;EN1,2:-1.01934770399;SOX5:-1.0218964143;IKZF2:-1.07814732679;JUN:-1.11292876116;FOXO1,3,4:-1.15339840623;SPZ1:-1.15640524076;DMAP1_NCOR{1,2}_SMARC:-1.16035307108;RORA:-1.1981867976;ZNF238:-1.25210818182;TFAP4:-1.32033202251;HBP1_HMGB_SSRP1_UBTF:-1.50431155631;FOX{I1,J2}:-1.70245420851;GATA4:-1.86391171231
|top_motifs=HNF1A:2.77374563956;DBP:1.53729215458;ALX1:1.4667558049;POU1F1:1.44369541146;RXRA_VDR{dimer}:1.42793229015;NKX3-2:1.10871090675;EP300:1.08632034165;XCPE1{core}:1.05989783762;NR6A1:1.03599500868;HAND1,2:0.960202219167;LHX3,4:0.941735812207;PBX1:0.910153566186;TEAD1:0.891400085128;NKX2-1,4:0.873924911996;GFI1:0.8301351031;STAT5{A,B}:0.808829577068;ADNP_IRX_SIX_ZHX:0.793296744177;TBX4,5:0.78835840352;NFY{A,B,C}:0.770702137103;SP1:0.737487740549;POU3F1..4:0.69275132938;E2F1..5:0.662519691019;ARID5B:0.662127917904;HNF4A_NR2F1,2:0.655604384983;TP53:0.635808443604;NKX2-3_NKX2-5:0.627192041123;TLX1..3_NFIC{dimer}:0.622268617744;TFCP2:0.612099823781;POU2F1..3:0.6028439126;FOXQ1:0.562689409342;NFE2:0.559233044928;LMO2:0.544053470391;CDC5L:0.535815303994;ZNF423:0.51708386652;HIF1A:0.516283837439;ZBTB16:0.50741301536;NFE2L2:0.495387509801;ZBTB6:0.482498147556;BACH2:0.448704233012;ELK1,4_GABP{A,B1}:0.425828883298;HSF1,2:0.42369888871;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.403559270711;SNAI1..3:0.380066715945;EBF1:0.377238989231;CUX2:0.335500398014;IRF7:0.323738719427;FOX{F1,F2,J1}:0.276275874248;STAT1,3:0.274588157833;GFI1B:0.272570889352;FOS_FOS{B,L1}_JUN{B,D}:0.253253089093;AHR_ARNT_ARNT2:0.241014660125;FOSL2:0.236722181031;NRF1:0.234616138264;EVI1:0.231154011965;ZNF143:0.226303987921;MAFB:0.226078723874;ATF2:0.222140113504;MYOD1:0.21667123084;NR3C1:0.215695370663;FOXL1:0.206528842013;SMAD1..7,9:0.190517860527;PITX1..3:0.180842499125;RBPJ:0.155037002864;ZEB1:0.138748604335;RXR{A,B,G}:0.133868546545;NFKB1_REL_RELA:0.123351306365;POU5F1:0.116601806523;HOXA9_MEIS1:0.112908362438;HOX{A5,B5}:0.107183726729;VSX1,2:0.0806057223972;ZNF148:0.0780581391554;PAX4:0.0770012521885;MYB:0.0751739993779;CDX1,2,4:0.0723426227638;STAT2,4,6:0.0720558953643;RFX1:0.0596782829031;NKX2-2,8:0.0585110185816;PAX5:0.0360935586838;ONECUT1,2:0.0295018321385;ALX4:0.0105269643218;PAX1,9:0.00660463152936;IKZF1:-0.00165486375716;PAX6:-0.0339024142364;IRF1,2:-0.0339602768542;MYBL2:-0.034078831533;PRRX1,2:-0.0598043967197;ESRRA:-0.0755765275166;CEBPA,B_DDIT3:-0.0808758276233;PAX8:-0.0818855468103;GTF2I:-0.0845121225477;MTE{core}:-0.1031262404;PATZ1:-0.114873281788;HIC1:-0.135719730281;SRF:-0.144223119174;ELF1,2,4:-0.148162316397;NFIX:-0.156975097241;NFATC1..3:-0.15973818541;RFX2..5_RFXANK_RFXAP:-0.186389519987;MEF2{A,B,C,D}:-0.188808137969;ATF6:-0.195186533223;UFEwm:-0.2035500003;MAZ:-0.207284025963;TBP:-0.218048828088;NANOG:-0.223757476088;GLI1..3:-0.238781961834;XBP1:-0.277777006841;TEF:-0.286294403036;HES1:-0.287264014579;SOX2:-0.288515308603;GTF2A1,2:-0.299960302765;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.302972020362;ETS1,2:-0.307660344885;TFDP1:-0.32134669281;MZF1:-0.327663208597;ATF5_CREB3:-0.332505767035;PPARG:-0.350899732522;TFAP2B:-0.367055205155;POU6F1:-0.367234262656;GATA6:-0.375920432601;HLF:-0.388177509512;TAL1_TCF{3,4,12}:-0.391198185295;RUNX1..3:-0.396499212586;YY1:-0.433428876192;MED-1{core}:-0.434666149436;TFAP2{A,C}:-0.439884735837;NANOG{mouse}:-0.440414008484;bHLH_family:-0.453933228978;PDX1:-0.471532195663;SPIB:-0.475248801217;NKX6-1,2:-0.475773160592;FOXN1:-0.492019926206;NR1H4:-0.492628008778;PRDM1:-0.493145347682;FOXM1:-0.512508052937;EGR1..3:-0.527629018779;LEF1_TCF7_TCF7L1,2:-0.532936952683;NHLH1,2:-0.538215442659;FOX{D1,D2}:-0.544240991984;RREB1:-0.545001828687;KLF4:-0.549580629188;NKX3-1:-0.552604444225;BREu{core}:-0.565593049249;TGIF1:-0.567234222334;SPI1:-0.576396970314;MYFfamily:-0.598580638328;AR:-0.606521321436;TLX2:-0.61484606679;HOX{A6,A7,B6,B7}:-0.621320844761;FOXA2:-0.636960642724;REST:-0.63706168491;SOX17:-0.638667635595;ZFP161:-0.641461731701;CRX:-0.644029780019;NFIL3:-0.646611649287;FOXD3:-0.654245226944;NFE2L1:-0.677242584757;FOXP3:-0.681370280273;OCT4_SOX2{dimer}:-0.697350266163;ZIC1..3:-0.714465266987;AIRE:-0.724481069122;FOXP1:-0.732537605799;MTF1:-0.737601038338;HMX1:-0.751446216713;TOPORS:-0.776116825771;NR5A1,2:-0.780693744654;HMGA1,2:-0.792625537725;GZF1:-0.806452045195;PAX2:-0.82207428464;ATF4:-0.828731064654;BPTF:-0.862707211938;GCM1,2:-0.871892578462;PAX3,7:-0.897355093146;ESR1:-0.897965666844;SREBF1,2:-0.931703579512;ZNF384:-0.942258147715;T:-0.961782788036;SOX{8,9,10}:-0.970995329411;CREB1:-1.00734695151;HOX{A4,D4}:-1.00946846121;EN1,2:-1.01934770399;SOX5:-1.0218964143;IKZF2:-1.07814732679;JUN:-1.11292876116;FOXO1,3,4:-1.15339840623;SPZ1:-1.15640524076;DMAP1_NCOR{1,2}_SMARC:-1.16035307108;RORA:-1.1981867976;ZNF238:-1.25210818182;TFAP4:-1.32033202251;HBP1_HMGB_SSRP1_UBTF:-1.50431155631;FOX{I1,J2}:-1.70245420851;GATA4:-1.86391171231
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10411-106B6;search_select_hide=table117:FF:10411-106B6
}}
}}

Latest revision as of 13:59, 3 June 2020

Name:renal cell carcinoma cell line:OS-RC-2
Species:Human (Homo sapiens)
Library ID:CNhs10729
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexmale
ageunknown
cell typeunclassifiable
cell lineOS-RC-2
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005489
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10729 CAGE DRX007990 DRR008862
Accession ID Hg19

Library idBAMCTSS
CNhs10729 DRZ000287 DRZ001672
Accession ID Hg38

Library idBAMCTSS
CNhs10729 DRZ011637 DRZ013022
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10053downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005489
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10062 RNA-Seq DRX057119 DRR062878
Accession ID Hg19

Library idBAMCTSS
RDhi10062 DRZ007954


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0347
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.396
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.156
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0287
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.247
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute1.201
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.102
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0632
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.436
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.158
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.217
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0.27
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.369
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.567
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.361
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10729

Jaspar motifP-value
MA0002.20.509
MA0003.10.669
MA0004.10.0402
MA0006.10.0232
MA0007.10.431
MA0009.10.926
MA0014.10.151
MA0017.10.0118
MA0018.22.35942e-5
MA0019.10.227
MA0024.10.00124
MA0025.10.253
MA0027.10.452
MA0028.19.47244e-4
MA0029.10.181
MA0030.10.175
MA0031.10.421
MA0035.20.762
MA0038.16.55207e-5
MA0039.28.86766e-4
MA0040.10.951
MA0041.10.2
MA0042.10.727
MA0043.10.0256
MA0046.12.01922e-53
MA0047.20.796
MA0048.10.616
MA0050.10.0102
MA0051.11.7202e-4
MA0052.10.107
MA0055.10.163
MA0057.10.889
MA0058.10.072
MA0059.10.284
MA0060.14.68693e-10
MA0061.10.133
MA0062.20.0158
MA0065.20.562
MA0066.10.574
MA0067.10.00338
MA0068.10.00339
MA0069.10.901
MA0070.10.25
MA0071.10.376
MA0072.10.278
MA0073.10.532
MA0074.10.608
MA0076.10.00648
MA0077.10.598
MA0078.10.16
MA0079.20.122
MA0080.23.60057e-4
MA0081.10.0533
MA0083.10.568
MA0084.10.0635
MA0087.10.622
MA0088.10.0387
MA0090.16.91976e-6
MA0091.10.0319
MA0092.10.992
MA0093.10.0968
MA0099.22.26582e-14
MA0100.10.745
MA0101.10.0869
MA0102.20.272
MA0103.10.101
MA0104.20.191
MA0105.10.834
MA0106.14.88133e-5
MA0107.10.115
MA0108.20.0832
MA0111.10.396
MA0112.20.31
MA0113.10.204
MA0114.10.00605
MA0115.10.529
MA0116.10.405
MA0117.10.58
MA0119.10.0446
MA0122.10.659
MA0124.10.778
MA0125.10.843
MA0131.10.496
MA0135.10.69
MA0136.10.0332
MA0137.20.257
MA0138.20.0335
MA0139.13.39508e-4
MA0140.10.496
MA0141.10.357
MA0142.10.164
MA0143.10.328
MA0144.10.0723
MA0145.10.00909
MA0146.10.399
MA0147.10.126
MA0148.10.109
MA0149.10.981
MA0150.10.0163
MA0152.10.963
MA0153.12.77106e-42
MA0154.10.46
MA0155.10.309
MA0156.10.343
MA0157.10.548
MA0159.10.977
MA0160.10.256
MA0162.10.479
MA0163.10.0153
MA0164.10.891
MA0258.10.993
MA0259.10.203



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10729

Novel motifP-value
10.562
100.332
1000.659
1010.151
1020.954
1030.588
1040.579
1050.473
1060.225
1070.701
1080.825
1090.3
110.669
1100.246
1110.314
1120.378
1130.146
1140.301
1150.214
1160.93
1170.302
1180.313
1190.471
120.975
1200.956
1210.931
1220.204
1230.00201
1240.988
1250.564
1260.161
1270.687
1280.446
1290.0945
130.0652
1300.183
1310.479
1320.106
1330.409
1340.699
1350.236
1360.108
1370.307
1380.653
1390.103
140.22
1400.121
1410.923
1420.811
1430.804
1440.972
1450.946
1460.396
1470.58
1480.304
1490.258
150.477
1500.603
1510.504
1520.962
1530.192
1540.781
1550.491
1560.267
1570.959
1580.477
1590.888
160.571
1600.383
1610.315
1620.513
1630.0407
1640.0977
1650.689
1660.664
1670.76
1680.788
1690.103
170.442
180.143
190.464
20.25
200.435
210.284
220.516
230.558
240.168
250.614
260.42
270.992
280.325
290.868
30.936
300.0114
310.801
320.00335
330.711
340.455
350.0149
360.183
370.837
380.922
390.607
40.275
400.829
410.155
420.801
430.951
440.705
450.124
460.902
470.435
480.775
490.12
50.826
500.736
510.788
520.6
530.671
540.639
550.432
560.172
570.298
580.957
590.489
60.873
600.778
610.782
620.456
630.7
640.912
650.592
660.00456
670.471
680.743
690.594
70.28
700.653
710.285
720.907
730.472
740.346
750.369
760.558
770.0557
780.448
790.0338
80.865
800.362
810.318
820.8
830.331
840.252
850.108
860.607
870.226
880.278
890.58
90.535
900.389
910.731
920.847
930.553
940.374
950.13
960.254
970.548
980.512
990.497



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10729


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100067 (kidney cell line sample)
0101120 (epithelial cell line sample)
0103192 (renal cancer cell line sample)
0100383 (renal cell carcinoma cell line sample)
0102403 (OS-RC-2 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

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