FF:11413-118E9: Difference between revisions

Latest revision as of 17:59, 4 June 2020

Name:	Endothelial Cells - Artery, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12023
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	artery
dev stage	53 years old adult
sex	male
age	53
cell type	blood vessel endothelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1596
catalog number	CA300-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005046

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12023		CAGE		DRX008222		DRR009094

Accession ID Hg19

Library id		BAM		CTSS
CNhs12023		DRZ000519		DRZ001904

Accession ID Hg38

Library id		BAM		CTSS
CNhs12023		DRZ011869		DRZ013254

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005046

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10004.GTGGCC		sRNA-Seq		DRX037050		DRR041416

Accession ID Hg19

Library id		BAM		CTSS
SRhi10004.GTGGCC		DRZ007058

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.11
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.15
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.214
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.545
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0061
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.272
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.441
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.28
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.493
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.678
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.356
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0824
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.211
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.836
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.152
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12023

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.189
MA0003.1	MA0003.1	0.378
MA0004.1	MA0004.1	0.312
MA0006.1	MA0006.1	0.0516
MA0007.1	MA0007.1	0.0471
MA0009.1	MA0009.1	0.292
MA0014.1	MA0014.1	0.994
MA0017.1	MA0017.1	0.682
MA0018.2	MA0018.2	2.88203e-4
MA0019.1	MA0019.1	0.0404
MA0024.1	MA0024.1	0.224
MA0025.1	MA0025.1	0.948
MA0027.1	MA0027.1	0.943
MA0028.1	MA0028.1	0.643
MA0029.1	MA0029.1	0.493
MA0030.1	MA0030.1	0.181
MA0031.1	MA0031.1	0.114
MA0035.2	MA0035.2	0.00179
MA0038.1	MA0038.1	0.152
MA0039.2	MA0039.2	0.254
MA0040.1	MA0040.1	0.46
MA0041.1	MA0041.1	0.203
MA0042.1	MA0042.1	0.719
MA0043.1	MA0043.1	1.00519e-5
MA0046.1	MA0046.1	0.645
MA0047.2	MA0047.2	0.267
MA0048.1	MA0048.1	0.0225
MA0050.1	MA0050.1	0.0148
MA0051.1	MA0051.1	0.696
MA0052.1	MA0052.1	0.564
MA0055.1	MA0055.1	1.43533e-4
MA0057.1	MA0057.1	0.292
MA0058.1	MA0058.1	0.308
MA0059.1	MA0059.1	0.135
MA0060.1	MA0060.1	8.92255e-4
MA0061.1	MA0061.1	0.21
MA0062.2	MA0062.2	0.381
MA0065.2	MA0065.2	0.832
MA0066.1	MA0066.1	0.811
MA0067.1	MA0067.1	0.0966
MA0068.1	MA0068.1	0.939
MA0069.1	MA0069.1	0.0782
MA0070.1	MA0070.1	0.996
MA0071.1	MA0071.1	0.761
MA0072.1	MA0072.1	0.518
MA0073.1	MA0073.1	0.266
MA0074.1	MA0074.1	0.778
MA0076.1	MA0076.1	0.28
MA0077.1	MA0077.1	2.36816e-6
MA0078.1	MA0078.1	0.062
MA0079.2	MA0079.2	0.327
MA0080.2	MA0080.2	2.63279e-4
MA0081.1	MA0081.1	0.0856
MA0083.1	MA0083.1	0.173
MA0084.1	MA0084.1	0.316
MA0087.1	MA0087.1	0.194
MA0088.1	MA0088.1	0.153
MA0090.1	MA0090.1	0.214
MA0091.1	MA0091.1	0.723
MA0092.1	MA0092.1	0.706
MA0093.1	MA0093.1	0.317
MA0099.2	MA0099.2	2.79238e-14
MA0100.1	MA0100.1	0.3
MA0101.1	MA0101.1	0.681
MA0102.2	MA0102.2	5.67965e-5
MA0103.1	MA0103.1	0.0311
MA0104.2	MA0104.2	0.871
MA0105.1	MA0105.1	0.415
MA0106.1	MA0106.1	0.00645
MA0107.1	MA0107.1	0.615
MA0108.2	MA0108.2	0.00719
MA0111.1	MA0111.1	0.364
MA0112.2	MA0112.2	0.637
MA0113.1	MA0113.1	0.197
MA0114.1	MA0114.1	0.339
MA0115.1	MA0115.1	0.787
MA0116.1	MA0116.1	0.916
MA0117.1	MA0117.1	0.298
MA0119.1	MA0119.1	0.0146
MA0122.1	MA0122.1	0.056
MA0124.1	MA0124.1	0.568
MA0125.1	MA0125.1	0.458
MA0131.1	MA0131.1	0.638
MA0135.1	MA0135.1	0.274
MA0136.1	MA0136.1	0.0068
MA0137.2	MA0137.2	0.372
MA0138.2	MA0138.2	0.896
MA0139.1	MA0139.1	0.376
MA0140.1	MA0140.1	0.0033
MA0141.1	MA0141.1	0.0535
MA0142.1	MA0142.1	0.443
MA0143.1	MA0143.1	0.559
MA0144.1	MA0144.1	0.331
MA0145.1	MA0145.1	0.165
MA0146.1	MA0146.1	0.751
MA0147.1	MA0147.1	0.552
MA0148.1	MA0148.1	0.128
MA0149.1	MA0149.1	0.0187
MA0150.1	MA0150.1	0.0519
MA0152.1	MA0152.1	0.374
MA0153.1	MA0153.1	0.539
MA0154.1	MA0154.1	0.813
MA0155.1	MA0155.1	0.122
MA0156.1	MA0156.1	1.00275e-4
MA0157.1	MA0157.1	0.431
MA0159.1	MA0159.1	0.91
MA0160.1	MA0160.1	0.485
MA0162.1	MA0162.1	0.0998
MA0163.1	MA0163.1	0.336
MA0164.1	MA0164.1	0.658
MA0258.1	MA0258.1	0.684
MA0259.1	MA0259.1	0.89

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12023

Novel motif	Logo	P-value
1	1	0.864
10	10	0.512
100	100	0.517
101	101	0.0239
102	102	0.716
103	103	0.63
104	104	0.686
105	105	0.754
106	106	0.319
107	107	0.00579
108	108	0.549
109	109	0.0826
11	11	0.21
110	110	0.016
111	111	0.817
112	112	0.699
113	113	0.0805
114	114	0.964
115	115	0.683
116	116	0.468
117	117	0.502
118	118	0.201
119	119	0.972
12	12	0.342
120	120	0.028
121	121	0.251
122	122	0.751
123	123	0.00866
124	124	0.0322
125	125	0.676
126	126	0.682
127	127	0.882
128	128	0.385
129	129	0.735
13	13	0.167
130	130	0.217
131	131	0.484
132	132	0.533
133	133	0.274
134	134	0.401
135	135	0.364
136	136	0.00972
137	137	0.104
138	138	0.999
139	139	0.671
14	14	0.472
140	140	0.82
141	141	0.926
142	142	0.863
143	143	0.174
144	144	0.11
145	145	0.151
146	146	0.131
147	147	0.486
148	148	0.0462
149	149	0.109
15	15	0.935
150	150	0.0428
151	151	0.996
152	152	0.0233
153	153	0.0312
154	154	0.82
155	155	0.467
156	156	0.417
157	157	0.185
158	158	0.0373
159	159	0.669
16	16	1
160	160	0.0622
161	161	0.447
162	162	0.775
163	163	0.902
164	164	0.662
165	165	0.0683
166	166	0.214
167	167	0.115
168	168	0.46
169	169	0.128
17	17	0.364
18	18	0.56
19	19	0.253
2	2	0.84
20	20	0.481
21	21	0.617
22	22	0.417
23	23	0.695
24	24	0.442
25	25	0.452
26	26	0.428
27	27	0.794
28	28	0.0735
29	29	0.575
3	3	0.786
30	30	0.874
31	31	0.766
32	32	0.509
33	33	0.248
34	34	0.226
35	35	0.253
36	36	0.0997
37	37	0.508
38	38	0.29
39	39	0.584
4	4	0.929
40	40	0.00449
41	41	0.207
42	42	0.835
43	43	0.426
44	44	0.79
45	45	0.262
46	46	0.948
47	47	0.362
48	48	0.0743
49	49	0.21
5	5	0.458
50	50	0.61
51	51	0.87
52	52	0.242
53	53	0.443
54	54	0.688
55	55	0.154
56	56	0.835
57	57	0.47
58	58	0.0544
59	59	0.168
6	6	0.268
60	60	0.381
61	61	0.957
62	62	0.25
63	63	0.403
64	64	0.809
65	65	0.892
66	66	0.0864
67	67	0.717
68	68	0.219
69	69	0.532
7	7	0.753
70	70	0.24
71	71	0.683
72	72	0.362
73	73	1.45882e-4
74	74	0.232
75	75	0.424
76	76	0.771
77	77	0.156
78	78	0.595
79	79	0.188
8	8	0.0378
80	80	0.919
81	81	0.256
82	82	0.175
83	83	0.655
84	84	0.414
85	85	0.196
86	86	0.918
87	87	0.00149
88	88	0.937
89	89	0.757
9	9	0.516
90	90	0.0666
91	91	0.602
92	92	0.496
93	93	0.836
94	94	0.19
95	95	0.0176
96	96	0.583
97	97	0.782
98	98	0.492
99	99	0.00676

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12023

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000047 human endothelial cell of the artery sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001637,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0005291,UBERON:0003509,UBERON:0000487,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0006598,UBERON:0007798,UBERON:0004852,UBERON:0002532,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0004872,UBERON:0006965
+|DRA_sample_Accession=CAGE@SAMD00005046
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000115,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000071,CL:1000413,CL:0000222,CL:0002546
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005046
+|accession_numbers=CAGE;DRX008222;DRR009094;DRZ000519;DRZ001904;DRZ011869;DRZ013254
+|accession_numbers_RNASeq=sRNA-Seq;DRX037050;DRR041416;DRZ007058
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000001
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.13!174.51!SOX18;;chr8:55370487..55370503,+!p1@SOX17!2.13!133.76!SOX17;;chr21:39870339..39870443,-!p1@ERG!2.08!118.08!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.83!66.67!SOX7;;chr17:6926362..6926377,+!p1@BCL6B!1.75!55.59!BCL6B;;chr6:34204921..34204939,+!p3@HMGA1!1.64!1197.12!HMGA1;;chr19:13213511..13213545,-!p2@LYL1!1.60!42.22!LYL1;;chr1:6479968..6479986,-!p1@HES2!1.54!34.07!HES2;;chr18:53068911..53068935,-!p4@TCF4!1.42!28.63!TCF4;;chr12:96588368..96588394,+!p3@ELK3!1.34!54.76!ELK3;;chr6:126070769..126070801,+!p1@HEY2!1.29!21.11!HEY2;;chr19:13213399..13213414,-!p6@LYL1!1.20!14.84!LYL1;;chr19:13213662..13213686,-!p1@LYL1!1.18!20.69!LYL1;;chr16:86600426..86600441,+!p1@FOXC2!1.11!29.68!FOXC2;;chr10:94449703..94449718,+!p1@HHEX!1.08!42.63!HHEX;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.70!BNC1;;chr17:46655672..46655697,-!p3@HOXB4!1.03!9.61!HOXB4;;chr2:177053386..177053402,+!p1@HOXD1!1.03!9.61!HOXD1;;chr19:46801639..46801699,+!p1@HIF3A!1.02!9.40!HIF3A;;chr20:42543441..42543497,+!p1@TOX2!1.01!42.43!TOX2;;chr11:65667884..65667895,-!p2@FOSL1!0.99!35.11!FOSL1;;chr12:66218255..66218304,+!p3@HMGA2!0.99!24.24!HMGA2;;chr3:128206762..128206781,-!p2@GATA2!0.98!54.34!GATA2;;chr6:34204672..34204692,+!p1@HMGA1!0.97!966.81!HMGA1;;chr3:168864315..168864339,-!p2@MECOM!0.97!13.79!MECOM;;chr4:174451370..174451387,-!p1@HAND2!0.97!8.36!HAND2;;chr11:65429891..65429915,-!p7@RELA!0.96!8.15!RELA;;chr19:13213555..13213568,-!p5@LYL1!0.94!7.73!LYL1;;chr22:19748231..19748317,+!p1@TBX1!0.93!7.52!TBX1;;chr20:42543506..42543549,+!p2@TOX2!0.92!17.97!TOX2;;chr18:19749541..19749557,+!p1@GATA6!0.91!22.99!GATA6;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.11!KDM5D;;chr8:11561684..11561751,+!p1@GATA4!0.90!6.90!GATA4;;chr10:31288370..31288393,-!p3@ZNF438!0.89!6.69!ZNF438;;chr2:237077022..237077038,-!p1@GBX2!0.89!6.69!GBX2;;chr3:169381420..169381535,-!p1@MECOM!0.88!7.73!MECOM;;chr1:209979467..209979494,-!p1@IRF6!0.87!7.31!IRF6;;chr7:115670804..115670825,-!p1@TFEC!0.87!6.48!TFEC;;chr20:42295745..42295765,+!p1@MYBL2!0.86!108.68!MYBL2;;chr11:65430554..65430579,-!p3@RELA!0.85!16.30!RELA;;chr12:66218212..66218244,+!p5@HMGA2!0.85!8.99!HMGA2;;chr9:16705069..16705086,-!p3@BNC2!0.85!6.06!BNC2;;chr11:65667846..65667868,-!p1@FOSL1!0.83!164.90!FOSL1;;chr7:35293685..35293718,-!p1@TBX20!0.82!5.64!TBX20;;chr12:124873357..124873401,-!p1@NCOR2!0.79!65.42!NCOR2;;chr17:41623692..41623715,-!p1@ETV4!0.79!24.03!ETV4;;chr17:46655704..46655718,-!p2@HOXB4!0.79!7.94!HOXB4;;chr20:6748325..6748352,+!p1@BMP2!0.79!7.73!BMP2;;chr4:174450089..174450153,-!p2@HAND2!0.78!5.02!HAND2;;chr7:26191809..26191890,+!p1@NFE2L3!0.76!25.50!NFE2L3;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.61!HMGA2;;chr19:53496768..53496799,-!p1@ZNF702P!0.76!7.73!ZNF702P;;chr18:22932080..22932170,-!p1@ZNF521!0.74!20.90!ZNF521;;chr20:42295713..42295738,+!p2@MYBL2!0.73!28.63!MYBL2;;chr19:13213465..13213478,-!p7@LYL1!0.73!4.39!LYL1;;chr2:85360499..85360598,+!p1@TCF7L1!0.71!25.71!TCF7L1;;chr4:57522166..57522260,-!p2@HOPX!0.71!4.81!HOPX;;chr10:94449675..94449694,+!p2@HHEX!0.70!11.91!HHEX;;chr7:139741594..139741615,-!p5@PARP12!0.70!3.97!PARP12;;chr3:178789522..178789564,-!p2@ZMAT3!0.68!31.77!ZMAT3;;chr12:3069037..3069119,+!p2@TEAD4!0.68!14.84!TEAD4;;chr6:28321971..28321995,-!p1@ZNF323!0.68!3.76!ZNF323;;chr17:6926381..6926392,+!p2@BCL6B!0.68!3.76!BCL6B;;chr1:8938709..8938720,-!p3@ENO1!0.67!206.91!ENO1;;chr9:14314131..14314147,-!p2@NFIB!0.67!23.41!NFIB;;chr5:92918919..92918942,+!p1@NR2F1!0.67!18.81!NR2F1;;chr12:66218598..66218645,+!p2@HMGA2!0.66!18.81!HMGA2;;chr14:74256787..74256858,-!p6@C14orf43!0.66!3.55!C14orf43;;chr2:237076992..237077008,-!p2@GBX2!0.66!3.55!GBX2;;chr3:168864383..168864400,-!p7@MECOM!0.66!3.55!MECOM;;chr2:46524537..46524553,+!p1@EPAS1!0.65!400.64!EPAS1;;chr20:48599506..48599526,+!p1@SNAI1!0.65!25.71!SNAI1;;chr11:65686732..65686756,+!p2@DRAP1!0.64!16.30!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.64!5.43!ETV4;;chr4:57522598..57522664,-!p3@HOPX!0.64!3.34!HOPX;;chr1:47695003..47695042,-!p2@TAL1!0.64!3.34!TAL1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.63!275.04!TAX1BP3;;chr18:19749386..19749404,+!p2@GATA6!0.63!5.02!GATA6;;chr3:168865194..168865245,-!p3@MECOM!0.63!4.39!MECOM;;chr11:65686802..65686818,+!p6@DRAP1!0.62!6.06!DRAP1;;chrY:2803415..2803468,+!p1@ZFY!0.62!3.13!ZFY;;chr7:27205106..27205134,-!p2@HOXA9!0.62!3.13!HOXA9;;chr18:53177984..53178004,-!p17@TCF4!0.62!3.13!TCF4;;chr8:106330656..106330684,+!p1@ZFPM2!0.61!9.20!ZFPM2;;chr18:53257001..53257015,-!p5@TCF4!0.61!5.85!TCF4;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.43!ETV4;;chr19:45908292..45908374,-!p1@PPP1R13L!0.60!31.77!PPP1R13L;;chr19:49865646..49865718,-!p1@TEAD2!0.60!30.72!TEAD2;;chr2:46602879..46602899,+!p8@EPAS1!0.60!3.76!EPAS1;;chr11:62368696..62368759,-!p4@MTA2!0.59!21.74!MTA2;;chr22:38597987..38598021,+!p2@MAFF!0.59!21.11!MAFF;;chr13:72441315..72441454,-!p1@DACH1!0.59!6.48!DACH1;;chr17:41623667..41623682,-!p8@ETV4!0.59!3.13!ETV4;;chr17:8027418..8027432,-!p1@HES7!0.59!2.93!HES7;;chr3:128212033..128212051,-!p1@GATA2!0.59!2.93!GATA2;;chr6:126070748..126070768,+!p2@HEY2!0.59!2.93!HEY2;;chr16:29819446..29819471,+!p9@MAZ!0.58!9.82!MAZ;;chr2:74730430..74730451,-!p1@LBX2!0.58!5.02!LBX2;;chr11:65430535..65430549,-!p4@RELA!0.58!3.34!RELA;;chr4:57522674..57522699,-!p5@HOPX!0.57!2.72!HOPX;;chr7:27196267..27196311,-!p1@HOXA7!0.57!2.72!HOXA7;;chr12:3068544..3068597,+!p1@TEAD4!0.56!19.44!TEAD4;;chr6:34204973..34204990,+!p4@HMGA1!0.55!43.26!HMGA1;;chr11:47236584..47236679,+!p1@DDB2!0.55!35.11!DDB2;;chr12:2986275..2986363,-!p1@FOXM1!0.55!32.19!FOXM1;;chr17:38498594..38498661,+!p2@RARA!0.55!10.24!RARA;;chr15:90544532..90544563,+!p1@ZNF710!0.55!5.85!ZNF710;;chr1:221053049..221053075,+!p3@HLX!0.55!5.02!HLX;;chr16:30406423..30406447,+!p4@ZNF48!0.55!2.51!ZNF48;;chr14:29235961..29236008,+!p1@FOXG1!0.55!2.51!FOXG1;;chr11:128563948..128564003,+!p1@FLI1!0.54!37.83!FLI1;;chr7:149470641..149470694,-!p1@ZNF467!0.54!13.79!ZNF467;;chr12:3068466..3068495,+!p3@TEAD4!0.54!6.27!TEAD4;;chr2:239756739..239756755,+!p2@TWIST2!0.54!4.81!TWIST2;;chr12:66218152..66218174,+!p10@HMGA2!0.54!2.72!HMGA2;;chr12:124873852..124873881,-!p3@NCOR2!0.53!18.18!NCOR2;;chr11:65687362..65687436,+!p3@DRAP1!0.53!13.38!DRAP1;;chr8:60031619..60031676,-!p1@TOX!0.53!6.06!TOX;;chr4:146402843..146402864,+!p3@SMAD1!0.53!5.43!SMAD1;;chr2:231280954..231280965,+!p2@SP100!0.53!5.02!SP100;;chr12:66218378..66218401,+!p6@HMGA2!0.53!4.18!HMGA2;;chr1:221052733..221052749,+!p2@HLX!0.53!3.34!HLX;;chr5:92918956..92918969,+!p4@NR2F1!0.53!2.72!NR2F1;;chr14:74226961..74227020,-!p1@C14orf43!0.52!19.23!C14orf43;;chr3:141087393..141087426,+!p3@ZBTB38!0.52!11.49!ZBTB38;;chr1:204042723..204042784,+!p3@SOX13!0.52!4.39!SOX13;;chr8:55370720..55370733,+!p2@SOX17!0.52!2.30!SOX17;;chr18:53068982..53068993,-!p20@TCF4!0.52!2.30!TCF4;;chr4:2263809..2263854,-!p1@MXD4!0.51!113.28!MXD4;;chr9:14314566..14314618,-!p1@NFIB!0.51!35.32!NFIB;;chr15:57211634..57211657,+!p5@TCF12!0.51!3.76!TCF12;;chr11:47237922..47237964,+!p4@DDB2!0.51!2.72!DDB2;;chr17:1958388..1958404,+!p1@HIC1!0.50!17.97!HIC1;;chr1:8934931..8934947,-!p4@ENO1!0.50!8.99!ENO1;;chr14:75988771..75988826,+!p1@BATF!0.50!3.13!BATF;;chr1:221052994..221053008,+!p6@HLX!0.50!2.72!HLX;;chr12:66218836..66218888,+!p1@HMGA2!0.49!25.92!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.49!16.30!FOXM1;;chr1:221052776..221052799,+!p1@HLX!0.49!4.39!HLX;;chr9:14314106..14314119,-!p5@NFIB!0.49!4.39!NFIB;;chr12:3068501..3068515,+!p4@TEAD4!0.49!4.18!TEAD4;;chr15:96876966..96877017,+!p12@NR2F2!0.49!3.34!NR2F2;;chr15:83953373..83953386,-!p2@BNC1!0.49!2.09!BNC1;;chr18:53068893..53068902,-!p28@TCF4!0.49!2.09!TCF4;;chr20:62670299..62670342,-!p8@ZNF512B!0.49!2.09!ZNF512B;;chr11:128562372..128562397,+!p4@FLI1!0.49!2.09!FLI1;;chr11:19262421..19262455,-!p3@E2F8!0.49!2.09!E2F8;;chr5:92918768..92918783,+!p8@NR2F1!0.49!2.09!NR2F1;;chr7:139741849..139741879,-!p12@PARP12!0.49!2.09!PARP12;;chr8:10588174..10588200,-!p3@SOX7!0.49!2.09!SOX7;;chr17:7590797..7590815,-!p1@TP53!0.48!120.38!TP53;;chr11:62369229..62369289,-!p2@MTA2!0.48!39.50!MTA2;;chr11:62369108..62369183,-!p3@MTA2!0.48!35.11!MTA2;;chr16:2059754..2059777,-!p2@ZNF598!0.48!8.99!ZNF598;;chr15:66994561..66994597,+!p2@SMAD6!0.48!5.85!SMAD6;;chr18:19749517..19749531,+!p3@GATA6!0.48!4.18!GATA6;;chr10:31288398..31288455,-!p2@ZNF438!0.48!2.51!ZNF438;;chr1:158979792..158979814,+!p2@IFI16!0.47!25.29!IFI16;;chr6:20402102..20402152,+!p1@E2F3!0.47!10.45!E2F3;;chr19:1652555..1652568,-!p2@TCF3!0.47!10.45!TCF3;;chr1:45805872..45805900,+!p2@TOE1!0.47!5.85!TOE1;;chr20:50721803..50721857,-!p2@ZFP64!0.47!3.55!ZFP64;;chr8:106330696..106330719,+!p2@ZFPM2!0.47!2.72!ZFPM2;;chr17:41622834..41622883,-!p6@ETV4!0.47!2.51!ETV4;;chr12:10875831..10876025,-!p1@CSDA!0.46!216.73!CSDA;;chr6:21593973..21593988,+!p1@SOX4!0.46!93.84!SOX4;;chr6:130339710..130339745,+!p1@L3MBTL3!0.46!20.48!L3MBTL3;;chr14:73360799..73360817,-!p1@DPF3!0.46!8.57!DPF3;;chr5:321810..321877,+!p1@AHRR!0.46!7.73!AHRR;;chr12:10875351..10875422,-!p4@CSDA!0.46!4.39!CSDA;;chr15:57211660..57211687,+!p6@TCF12!0.46!3.55!TCF12;;chr17:41622765..41622821,-!p2@ETV4!0.46!3.34!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.46!3.34!HOXB2;;chr19:49864746..49864780,-!p2@TEAD2!0.46!2.93!TEAD2;;chr2:46612334..46612349,+!p6@EPAS1!0.46!2.72!EPAS1;;chr3:170076314..170076334,+!p2@SKIL!0.46!2.72!SKIL;;chr5:71803177..71803255,-!p1@ZNF366!0.46!1.88!ZNF366;;chr16:86600870..86600921,+!p2@FOXC2!0.46!1.88!FOXC2;;chr17:41622731..41622764,-!p5@ETV4!0.46!1.88!ETV4;;chr19:13213496..13213501,-!p10@LYL1!0.46!1.88!LYL1;;chr12:66218904..66218913,+!p11@HMGA2!0.46!1.88!HMGA2;;chr1:8938736..8938756,-!p1@ENO1!0.45!2851.32!ENO1;;chr19:1863568..1863586,-!p1@KLF16!0.45!84.64!KLF16;;chr8:128748308..128748324,+!p2@MYC!0.45!70.43!MYC;;chr6:1610293..1610310,+!p1@FOXC1!0.45!3.55!FOXC1;;chr17:41623075..41623101,-!p9@ETV4!0.45!2.30!ETV4;;chr1:151032860..151032918,+!p1@MLLT11!0.44!29.47!MLLT11;;chr5:138609782..138609826,+!p5@MATR3!0.44!15.67!MATR3;;chr16:1429627..1429662,-!p2@UNKL!0.44!6.69!UNKL;;chr1:156470494..156470505,-!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000413;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
+|ffid_belonging_in_development=CL:0002546,CL:0000222
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11413-118E9
 |is_a=EFO:0002091;;FF:0000047
 |is_obsolete=
+|library_id=CNhs12023
+|library_id_phase_based=2:CNhs12023
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11413
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTGGCC.11413
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11413
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTGGCC.11413
 |name=Endothelial Cells - Artery, donor3
 |namespace=FANTOM5
@@ Line 44: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12023,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10004,,,
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 |rna_box=118
 |rna_catalog_number=CA300-R10a
@@ Line 56: / Line 80: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=118E9
+|rna_tube_id=1.18E+11
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10004.GTGGCC
 |sample_age=53
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 80: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11413-118E9;search_select_hide=table117:FF:11413-118E9
 }}

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FF:11413-118E9: Difference between revisions

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Latest revision as of 17:59, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0