FF:11605-120I3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004909 | |||
|accession_numbers=CAGE;DRX008199;DRR009071;DRZ000496;DRZ001881;DRZ011846;DRZ013231 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0002494,CL:0000737,CL:0000746 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0002494,CL:0000737,CL:0000746 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.31!203.22!TCF21;;chr8:11561684..11561751,+!p1@GATA4!1.85!69.08!GATA4;;chr7:35293685..35293718,-!p1@TBX20!1.71!50.30!TBX20;;chr6:85474299..85474324,-!p1@TBX18!1.68!81.15!TBX18;;chr17:1959369..1959388,+!p2@HIC1!1.66!114.02!HIC1;;chr4:174451370..174451387,-!p1@HAND2!1.66!44.94!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!1.44!55.67!C11orf9;;chr18:19749386..19749404,+!p2@GATA6!1.42!36.22!GATA6;;chr11:32457075..32457095,-!p1@WT1!1.28!18.11!WT1;;chr8:55370487..55370503,+!p1@SOX17!1.27!17.44!SOX17;;chr18:19749541..19749557,+!p1@GATA6!1.26!53.66!GATA6;;chr7:19157248..19157268,-!p1@TWIST1!1.25!45.61!TWIST1;;chr15:67430351..67430366,+!p10@SMAD3!1.22!15.43!SMAD3;;chr2:19558373..19558392,-!p1@OSR1!1.21!41.58!OSR1;;chr17:70117153..70117174,+!p1@SOX9!1.16!138.16!SOX9;;chr15:57511609..57511651,+!p2@TCF12!1.16!22.80!TCF12;;chr11:47279504..47279563,+!p1@NR1H3!1.15!29.51!NR1H3;;chr17:1958388..1958404,+!p1@HIC1!1.12!77.80!HIC1;;chr6:19837592..19837621,+!p1@ID4!1.07!66.40!ID4;;chr20:30193083..30193098,+!p1@ID1!1.06!847.10!ID1;;chr3:141087393..141087426,+!p3@ZBTB38!1.05!41.58!ZBTB38;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.04!10.06!PEG3;;chr6:126240380..126240430,+!p2@NCOA7!1.01!24.15!NCOA7;;chr3:25469724..25469773,+!p1@RARB!0.99!12.74!RARB;;chr8:10588010..10588030,-!p1@SOX7!0.99!8.72!SOX7;;chr16:85932760..85932775,+!p1@IRF8!0.99!8.72!IRF8;;chr10:64576105..64576133,-!p1@EGR2!0.98!18.11!EGR2;;chr5:92918919..92918942,+!p1@NR2F1!0.95!36.89!NR2F1;;chr9:73029219..73029289,-!p2@KLF9!0.94!24.15!KLF9;;chr6:85473156..85473210,-!p2@TBX18!0.94!9.39!TBX18;;chr1:164528410..164528428,+!p1@PBX1!0.93!58.35!PBX1;;chr20:48599506..48599526,+!p1@SNAI1!0.93!49.63!SNAI1;;chr14:62162285..62162296,+!p3@HIF1A!0.93!40.91!HIF1A;;chr20:62680984..62680999,-!p1@SOX18!0.93!10.06!SOX18;;chr21:39870339..39870443,-!p1@ERG!0.92!7.38!ERG;;chr8:48650715..48650735,-!p1@CEBPD!0.91!943.01!CEBPD;;chr14:62162258..62162269,+!p2@HIF1A!0.91!71.09!HIF1A;;chr1:158969752..158969780,+!p6@IFI16!0.91!12.74!IFI16;;chr18:19749517..19749531,+!p3@GATA6!0.90!12.74!GATA6;;chr18:19749353..19749367,+!p4@GATA6!0.89!6.71!GATA6;;chr1:158975744..158975769,+!p10@IFI16!0.89!6.71!IFI16;;chr1:164528942..164528964,+!p11@PBX1!0.89!6.71!PBX1;;chr1:40105299..40105326,-!p1@HEYL!0.89!6.71!HEYL;;chr4:174450089..174450153,-!p2@HAND2!0.89!6.71!HAND2;;chr10:131762504..131762555,-!p1@EBF3!0.89!6.71!EBF3;;chr20:50179368..50179392,-!p2@NFATC2!0.88!8.72!NFATC2;;chr1:164528384..164528409,+!p3@PBX1!0.87!20.79!PBX1;;chr1:23885981..23886002,-!p1@ID3!0.86!1168.36!ID3;;chr1:170633348..170633399,+!p2@PRRX1!0.86!8.72!PRRX1;;chr19:46801639..46801699,+!p1@HIF3A!0.85!6.04!HIF3A;;chr3:25469815..25469866,+!p3@RARB!0.85!6.04!RARB;;chrY:21906594..21906622,-!p1@KDM5D!0.85!6.04!KDM5D;;chr11:46299199..46299233,+!p1@CREB3L1!0.84!32.86!CREB3L1;;chr1:23696348..23696363,-!p4@ZNF436!0.84!6.71!ZNF436;;chr16:8962202..8962222,-!p3@CARHSP1!0.83!10.73!CARHSP1;;chr5:92918894..92918912,+!p2@NR2F1!0.82!19.45!NR2F1;;chr1:164528911..164528940,+!p7@PBX1!0.82!8.72!PBX1;;chr19:45260775..45260838,+!p5@BCL3!0.82!7.38!BCL3;;chr7:149470540..149470596,-!p2@ZNF467!0.81!7.38!ZNF467;;chr16:88519743..88519754,+!p2@ZFPM1!0.81!6.04!ZFPM1;;chr18:53068911..53068935,-!p4@TCF4!0.80!6.04!TCF4;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.80!5.37!SEBOX;;chr20:61051039..61051057,-!p1@GATA5!0.80!5.37!GATA5;;chr11:32457413..32457431,-!p2@WT1!0.80!5.37!WT1;;chr3:25470156..25470227,+!p2@RARB!0.80!5.37!RARB;;chr15:67418047..67418093,+!p4@SMAD3!0.79!6.71!SMAD3;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.21!SNAI2;;chr19:13134772..13134822,+!p2@NFIX!0.77!7.38!NFIX;;chr14:62162224..62162254,+!p1@HIF1A!0.76!762.59!HIF1A;;chr8:49833978..49833996,-!p1@SNAI2!0.76!109.32!SNAI2;;chr1:23696308..23696339,-!p2@ZNF436!0.76!10.73!ZNF436;;chr2:85980951..85981004,+!p1@ATOH8!0.76!8.05!ATOH8;;chrX:131545273..131545287,-!p17@MBNL3!0.76!4.69!MBNL3;;chr6:85473227..85473243,-!p5@TBX18!0.76!4.69!TBX18;;chr8:11561453..11561466,+!p2@GATA4!0.76!4.69!GATA4;;chr15:67430381..67430396,+!p21@SMAD3!0.76!4.69!SMAD3;;chr19:13213399..13213414,-!p6@LYL1!0.76!4.69!LYL1;;chr1:170632285..170632309,+!p1@PRRX1!0.75!5.37!PRRX1;;chr14:62203749..62203798,+!p5@HIF1A!0.74!7.38!HIF1A;;chr2:66662281..66662308,+!p1@MEIS1!0.73!16.77!MEIS1;;chr3:157823517..157823562,-!p1@SHOX2!0.73!4.69!SHOX2;;chr1:23696448..23696453,-!p5@ZNF436!0.72!5.37!ZNF436;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.69!PRRX1;;chr5:92918956..92918969,+!p4@NR2F1!0.72!4.69!NR2F1;;chr5:92919375..92919438,+!p6@NR2F1!0.72!4.69!NR2F1;;chr10:51572408..51572454,+!p3@NCOA4!0.71!26.83!NCOA4;;chr7:19157043..19157088,-!p2@TWIST1!0.71!11.40!TWIST1;;chr19:45971246..45971265,+!p1@FOSB!0.70!85.85!FOSB;;chr17:38498402..38498445,+!p3@RARA!0.70!16.10!RARA;;chr6:45296048..45296082,+!p1@RUNX2!0.70!4.69!RUNX2;;chr6:85474198..85474212,-!p3@TBX18!0.70!4.02!TBX18;;chr7:27170359..27170381,-!p1@HOXA4!0.70!4.02!HOXA4;;chr1:170632250..170632277,+!p7@PRRX1!0.70!4.02!PRRX1;;chr20:590944..590960,-!p1@TCF15!0.70!4.02!TCF15;;chr11:125034605..125034636,+!p2@PKNOX2!0.70!4.02!PKNOX2;;chr2:85981027..85981047,+!p8@ATOH8!0.70!4.02!ATOH8;;chr15:67418177..67418204,+!p9@SMAD3!0.70!4.02!SMAD3;;chr17:6926362..6926377,+!p1@BCL6B!0.70!4.02!BCL6B;;chr10:22292591..22292606,-!p2@DNAJC1!0.69!6.71!DNAJC1;;chr12:57504975..57505019,-!p2@STAT6!0.68!17.44!STAT6;;chr17:41622925..41622976,-!p3@ETV4!0.68!6.04!ETV4;;chr14:62203595..62203676,+!p4@HIF1A!0.67!7.38!HIF1A;;chr3:126076242..126076257,-!p1@KLF15!0.67!4.69!KLF15;;chr3:141087339..141087387,+!p2@ZBTB38!0.66!42.92!ZBTB38;;chr15:37392724..37392757,-!p1@MEIS2!0.66!18.78!MEIS2;;chr17:38498594..38498661,+!p2@RARA!0.66!13.41!RARA;;chr1:164528616..164528660,+!p5@PBX1!0.66!8.05!PBX1;;chr14:62213827..62213853,+!p6@HIF1A!0.66!5.37!HIF1A;;chr8:116681108..116681120,-!p9@TRPS1!0.66!4.69!TRPS1;;chr5:92918860..92918871,+!p10@NR2F1!0.66!4.02!NR2F1;;chr15:67418119..67418162,+!p5@SMAD3!0.66!4.02!SMAD3;;chr16:8962853..8962878,-!p1@CARHSP1!0.65!239.44!CARHSP1;;chr2:239756671..239756732,+!p1@TWIST2!0.65!12.74!TWIST2;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.37!HMGA2;;chr3:128206762..128206781,-!p2@GATA2!0.64!24.15!GATA2;;chr21:47063625..47063658,+!p1@PCBP3!0.64!16.77!PCBP3;;chr10:35484804..35484902,+!p2@CREM!0.64!14.76!CREM;;chr1:164528445..164528459,+!p2@PBX1!0.64!12.07!PBX1;;chr8:22550982..22550999,-!p1@EGR3!0.64!10.73!EGR3;;chr1:170632115..170632136,+!p9@PRRX1!0.64!3.35!PRRX1;;chr15:37386163..37386175,-!p52@MEIS2!0.64!3.35!MEIS2;;chr4:174451350..174451363,-!p3@HAND2!0.64!3.35!HAND2;;chr11:32456954..32456965,-!p4@WT1!0.64!3.35!WT1;;chr9:132427883..132427951,+!p2@PRRX2!0.64!3.35!PRRX2;;chr16:88519669..88519726,+!p1@ZFPM1!0.62!33.54!ZFPM1;;chr8:72756667..72756736,-!p2@MSC!0.62!5.37!MSC;;chr11:128563948..128564003,+!p1@FLI1!0.61!44.27!FLI1;;chr8:48650982..48651023,-!p3@CEBPD!0.61!8.72!CEBPD;;chr19:35455110..35455149,-!p1@ZNF792!0.61!6.71!ZNF792;;chr19:58987786..58987805,+!p3@ZNF446!0.61!4.69!ZNF446;;chr6:21593973..21593988,+!p1@SOX4!0.60!131.46!SOX4;;chr8:72756267..72756296,-!p4@MSC!0.60!4.69!MSC;;chr14:62213758..62213774,+!p8@HIF1A!0.60!4.02!HIF1A;;chr14:75745523..75745537,+!p1@FOS!0.59!430.59!FOS;;chr19:45251943..45252006,+!p1@BCL3!0.59!93.23!BCL3;;chr7:149470641..149470694,-!p1@ZNF467!0.59!15.43!ZNF467;;chr12:104532004..104532033,-!p4@NFYB!0.59!9.39!NFYB;;chr10:51572339..51572376,+!p4@NCOA4!0.59!7.38!NCOA4;;chr2:145282041..145282092,-!p8@ZEB2!0.59!4.69!ZEB2;;chr8:72756637..72756664,-!p3@MSC!0.59!3.35!MSC;;chr11:47279248..47279264,+!p3@NR1H3!0.59!3.35!NR1H3;;chr9:14083467..14083483,-!p4@NFIB!0.58!8.05!NFIB;;chr8:116681123..116681143,-!p4@TRPS1!0.58!6.04!TRPS1;;chr2:28618532..28618610,+!p4@FOSL2!0.58!5.37!FOSL2;;chr17:46622114..46622138,-!p4@HOXB2!0.58!4.69!HOXB2;;chr12:53614115..53614154,-!p1@RARG!0.57!17.44!RARG;;chr20:42543441..42543497,+!p1@TOX2!0.57!14.76!TOX2;;chr19:13134457..13134462,+!p5@NFIX!0.57!5.37!NFIX;;chr7:100076723..100076737,-!p3@TSC22D4!0.57!4.69!TSC22D4;;chr17:46621279..46621297,-!p13@HOXB2!0.57!2.68!HOXB2;;chr2:85980768..85980783,+!p10@ATOH8!0.57!2.68!ATOH8;;chr19:47523058..47523114,+!p1@NPAS1!0.57!2.68!NPAS1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.57!2.68!ZSCAN1;;chr1:217262933..217262968,-!p3@ESRRG!0.57!2.68!ESRRG;;chr1:44513995..44514031,+!p1@KLF17!0.57!2.68!KLF17;;chr13:37494275..37494304,-!p2@SMAD9!0.57!2.68!SMAD9;;chr14:62214151..62214164,+!p11@HIF1A!0.57!2.68!HIF1A;;chr9:16705069..16705086,-!p3@BNC2!0.57!2.68!BNC2;;chr12:66218598..66218645,+!p2@HMGA2!0.56!14.76!HMGA2;;chr20:42543506..42543549,+!p2@TOX2!0.56!7.38!TOX2;;chr1:61924375..61924380,+!p6@NFIA!0.56!4.02!NFIA;;chr4:146436110..146436135,+!p6@SMAD1!0.56!4.02!SMAD1;;chr9:73028814..73028895,-!p1@KLF9!0.55!31.52!KLF9;;chr19:46272462..46272562,-!p1@SIX5!0.55!12.74!SIX5;;chr18:56532100..56532130,+!p1@ZNF532!0.55!5.37!ZNF532;;chr9:14082760..14082775,-!p6@NFIB!0.55!4.69!NFIB;;chr3:168864315..168864339,-!p2@MECOM!0.55!4.69!MECOM;;chr20:6748325..6748352,+!p1@BMP2!0.55!4.02!BMP2;;chr15:37392094..37392116,-!p6@MEIS2!0.55!3.35!MEIS2;;chr6:144329384..144329405,-!p1@PLAGL1!0.54!36.22!PLAGL1;;chr12:66218183..66218209,+!p4@HMGA2!0.54!5.37!HMGA2;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.54!4.69!MEIS3P1;;chr2:166326200..166326216,+!p1@CSRNP3!0.54!4.02!CSRNP3;;chr6:21597431..21597447,+!p8@SOX4!0.54!3.35!SOX4;;chr5:176738887..176738934,-!p1@MXD3!0.53!20.12!MXD3;;chr12:3069037..3069119,+!p2@TEAD4!0.53!10.06!TEAD4;;chr14:24837368..24837401,+!p1@NFATC4!0.53!6.71!NFATC4;;chr3:168865194..168865245,-!p3@MECOM!0.53!3.35!MECOM;;chr15:37392534..37392562,-!p10@MEIS2!0.53!2.68!MEIS2;;chr19:13213511..13213545,-!p2@LYL1!0.53!2.68!LYL1;;chr12:66218836..66218888,+!p1@HMGA2!0.52!27.50!HMGA2;;chr4:146402795..146402816,+!p7@SMAD1!0.52!3.35!SMAD1;;chr1:23886132..23886156,-!p2@ID3!0.52!2.68!ID3;;chr12:104531945..104531996,-!p1@NFYB!0.51!40.24!NFYB;;chr19:49865646..49865718,-!p1@TEAD2!0.51!24.82!TEAD2;;chr19:46272106..46272115,-!p3@SIX5!0.51!7.38!SIX5;;chr5:158526917..158526932,-!p1@EBF1!0.51!6.71!EBF1;;chr3:12329397..12329433,+!p2@PPARG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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.31!203.22!TCF21;;chr8:11561684..11561751,+!p1@GATA4!1.85!69.08!GATA4;;chr7:35293685..35293718,-!p1@TBX20!1.71!50.30!TBX20;;chr6:85474299..85474324,-!p1@TBX18!1.68!81.15!TBX18;;chr17:1959369..1959388,+!p2@HIC1!1.66!114.02!HIC1;;chr4:174451370..174451387,-!p1@HAND2!1.66!44.94!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!1.44!55.67!C11orf9;;chr18:19749386..19749404,+!p2@GATA6!1.42!36.22!GATA6;;chr11:32457075..32457095,-!p1@WT1!1.28!18.11!WT1;;chr8:55370487..55370503,+!p1@SOX17!1.27!17.44!SOX17;;chr18:19749541..19749557,+!p1@GATA6!1.26!53.66!GATA6;;chr7:19157248..19157268,-!p1@TWIST1!1.25!45.61!TWIST1;;chr15:67430351..67430366,+!p10@SMAD3!1.22!15.43!SMAD3;;chr2:19558373..19558392,-!p1@OSR1!1.21!41.58!OSR1;;chr17:70117153..70117174,+!p1@SOX9!1.16!138.16!SOX9;;chr15:57511609..57511651,+!p2@TCF12!1.16!22.80!TCF12;;chr11:47279504..47279563,+!p1@NR1H3!1.15!29.51!NR1H3;;chr17:1958388..1958404,+!p1@HIC1!1.12!77.80!HIC1;;chr6:19837592..19837621,+!p1@ID4!1.07!66.40!ID4;;chr20:30193083..30193098,+!p1@ID1!1.06!847.10!ID1;;chr3:141087393..141087426,+!p3@ZBTB38!1.05!41.58!ZBTB38;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.04!10.06!PEG3;;chr6:126240380..126240430,+!p2@NCOA7!1.01!24.15!NCOA7;;chr3:25469724..25469773,+!p1@RARB!0.99!12.74!RARB;;chr8:10588010..10588030,-!p1@SOX7!0.99!8.72!SOX7;;chr16:85932760..85932775,+!p1@IRF8!0.99!8.72!IRF8;;chr10:64576105..64576133,-!p1@EGR2!0.98!18.11!EGR2;;chr5:92918919..92918942,+!p1@NR2F1!0.95!36.89!NR2F1;;chr9:73029219..73029289,-!p2@KLF9!0.94!24.15!KLF9;;chr6:85473156..85473210,-!p2@TBX18!0.94!9.39!TBX18;;chr1:164528410..164528428,+!p1@PBX1!0.93!58.35!PBX1;;chr20:48599506..48599526,+!p1@SNAI1!0.93!49.63!SNAI1;;chr14:62162285..62162296,+!p3@HIF1A!0.93!40.91!HIF1A;;chr20:62680984..62680999,-!p1@SOX18!0.93!10.06!SOX18;;chr21:39870339..39870443,-!p1@ERG!0.92!7.38!ERG;;chr8:48650715..48650735,-!p1@CEBPD!0.91!943.01!CEBPD;;chr14:62162258..62162269,+!p2@HIF1A!0.91!71.09!HIF1A;;chr1:158969752..158969780,+!p6@IFI16!0.91!12.74!IFI16;;chr18:19749517..19749531,+!p3@GATA6!0.90!12.74!GATA6;;chr18:19749353..19749367,+!p4@GATA6!0.89!6.71!GATA6;;chr1:158975744..158975769,+!p10@IFI16!0.89!6.71!IFI16;;chr1:164528942..164528964,+!p11@PBX1!0.89!6.71!PBX1;;chr1:40105299..40105326,-!p1@HEYL!0.89!6.71!HEYL;;chr4:174450089..174450153,-!p2@HAND2!0.89!6.71!HAND2;;chr10:131762504..131762555,-!p1@EBF3!0.89!6.71!EBF3;;chr20:50179368..50179392,-!p2@NFATC2!0.88!8.72!NFATC2;;chr1:164528384..164528409,+!p3@PBX1!0.87!20.79!PBX1;;chr1:23885981..23886002,-!p1@ID3!0.86!1168.36!ID3;;chr1:170633348..170633399,+!p2@PRRX1!0.86!8.72!PRRX1;;chr19:46801639..46801699,+!p1@HIF3A!0.85!6.04!HIF3A;;chr3:25469815..25469866,+!p3@RARB!0.85!6.04!RARB;;chrY:21906594..21906622,-!p1@KDM5D!0.85!6.04!KDM5D;;chr11:46299199..46299233,+!p1@CREB3L1!0.84!32.86!CREB3L1;;chr1:23696348..23696363,-!p4@ZNF436!0.84!6.71!ZNF436;;chr16:8962202..8962222,-!p3@CARHSP1!0.83!10.73!CARHSP1;;chr5:92918894..92918912,+!p2@NR2F1!0.82!19.45!NR2F1;;chr1:164528911..164528940,+!p7@PBX1!0.82!8.72!PBX1;;chr19:45260775..45260838,+!p5@BCL3!0.82!7.38!BCL3;;chr7:149470540..149470596,-!p2@ZNF467!0.81!7.38!ZNF467;;chr16:88519743..88519754,+!p2@ZFPM1!0.81!6.04!ZFPM1;;chr18:53068911..53068935,-!p4@TCF4!0.80!6.04!TCF4;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.80!5.37!SEBOX;;chr20:61051039..61051057,-!p1@GATA5!0.80!5.37!GATA5;;chr11:32457413..32457431,-!p2@WT1!0.80!5.37!WT1;;chr3:25470156..25470227,+!p2@RARB!0.80!5.37!RARB;;chr15:67418047..67418093,+!p4@SMAD3!0.79!6.71!SMAD3;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.21!SNAI2;;chr19:13134772..13134822,+!p2@NFIX!0.77!7.38!NFIX;;chr14:62162224..62162254,+!p1@HIF1A!0.76!762.59!HIF1A;;chr8:49833978..49833996,-!p1@SNAI2!0.76!109.32!SNAI2;;chr1:23696308..23696339,-!p2@ZNF436!0.76!10.73!ZNF436;;chr2:85980951..85981004,+!p1@ATOH8!0.76!8.05!ATOH8;;chrX:131545273..131545287,-!p17@MBNL3!0.76!4.69!MBNL3;;chr6:85473227..85473243,-!p5@TBX18!0.76!4.69!TBX18;;chr8:11561453..11561466,+!p2@GATA4!0.76!4.69!GATA4;;chr15:67430381..67430396,+!p21@SMAD3!0.76!4.69!SMAD3;;chr19:13213399..13213414,-!p6@LYL1!0.76!4.69!LYL1;;chr1:170632285..170632309,+!p1@PRRX1!0.75!5.37!PRRX1;;chr14:62203749..62203798,+!p5@HIF1A!0.74!7.38!HIF1A;;chr2:66662281..66662308,+!p1@MEIS1!0.73!16.77!MEIS1;;chr3:157823517..157823562,-!p1@SHOX2!0.73!4.69!SHOX2;;chr1:23696448..23696453,-!p5@ZNF436!0.72!5.37!ZNF436;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.69!PRRX1;;chr5:92918956..92918969,+!p4@NR2F1!0.72!4.69!NR2F1;;chr5:92919375..92919438,+!p6@NR2F1!0.72!4.69!NR2F1;;chr10:51572408..51572454,+!p3@NCOA4!0.71!26.83!NCOA4;;chr7:19157043..19157088,-!p2@TWIST1!0.71!11.40!TWIST1;;chr19:45971246..45971265,+!p1@FOSB!0.70!85.85!FOSB;;chr17:38498402..38498445,+!p3@RARA!0.70!16.10!RARA;;chr6:45296048..45296082,+!p1@RUNX2!0.70!4.69!RUNX2;;chr6:85474198..85474212,-!p3@TBX18!0.70!4.02!TBX18;;chr7:27170359..27170381,-!p1@HOXA4!0.70!4.02!HOXA4;;chr1:170632250..170632277,+!p7@PRRX1!0.70!4.02!PRRX1;;chr20:590944..590960,-!p1@TCF15!0.70!4.02!TCF15;;chr11:125034605..125034636,+!p2@PKNOX2!0.70!4.02!PKNOX2;;chr2:85981027..85981047,+!p8@ATOH8!0.70!4.02!ATOH8;;chr15:67418177..67418204,+!p9@SMAD3!0.70!4.02!SMAD3;;chr17:6926362..6926377,+!p1@BCL6B!0.70!4.02!BCL6B;;chr10:22292591..22292606,-!p2@DNAJC1!0.69!6.71!DNAJC1;;chr12:57504975..57505019,-!p2@STAT6!0.68!17.44!STAT6;;chr17:41622925..41622976,-!p3@ETV4!0.68!6.04!ETV4;;chr14:62203595..62203676,+!p4@HIF1A!0.67!7.38!HIF1A;;chr3:126076242..126076257,-!p1@KLF15!0.67!4.69!KLF15;;chr3:141087339..141087387,+!p2@ZBTB38!0.66!42.92!ZBTB38;;chr15:37392724..37392757,-!p1@MEIS2!0.66!18.78!MEIS2;;chr17:38498594..38498661,+!p2@RARA!0.66!13.41!RARA;;chr1:164528616..164528660,+!p5@PBX1!0.66!8.05!PBX1;;chr14:62213827..62213853,+!p6@HIF1A!0.66!5.37!HIF1A;;chr8:116681108..116681120,-!p9@TRPS1!0.66!4.69!TRPS1;;chr5:92918860..92918871,+!p10@NR2F1!0.66!4.02!NR2F1;;chr15:67418119..67418162,+!p5@SMAD3!0.66!4.02!SMAD3;;chr16:8962853..8962878,-!p1@CARHSP1!0.65!239.44!CARHSP1;;chr2:239756671..239756732,+!p1@TWIST2!0.65!12.74!TWIST2;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.37!HMGA2;;chr3:128206762..128206781,-!p2@GATA2!0.64!24.15!GATA2;;chr21:47063625..47063658,+!p1@PCBP3!0.64!16.77!PCBP3;;chr10:35484804..35484902,+!p2@CREM!0.64!14.76!CREM;;chr1:164528445..164528459,+!p2@PBX1!0.64!12.07!PBX1;;chr8:22550982..22550999,-!p1@EGR3!0.64!10.73!EGR3;;chr1:170632115..170632136,+!p9@PRRX1!0.64!3.35!PRRX1;;chr15:37386163..37386175,-!p52@MEIS2!0.64!3.35!MEIS2;;chr4:174451350..174451363,-!p3@HAND2!0.64!3.35!HAND2;;chr11:32456954..32456965,-!p4@WT1!0.64!3.35!WT1;;chr9:132427883..132427951,+!p2@PRRX2!0.64!3.35!PRRX2;;chr16:88519669..88519726,+!p1@ZFPM1!0.62!33.54!ZFPM1;;chr8:72756667..72756736,-!p2@MSC!0.62!5.37!MSC;;chr11:128563948..128564003,+!p1@FLI1!0.61!44.27!FLI1;;chr8:48650982..48651023,-!p3@CEBPD!0.61!8.72!CEBPD;;chr19:35455110..35455149,-!p1@ZNF792!0.61!6.71!ZNF792;;chr19:58987786..58987805,+!p3@ZNF446!0.61!4.69!ZNF446;;chr6:21593973..21593988,+!p1@SOX4!0.60!131.46!SOX4;;chr8:72756267..72756296,-!p4@MSC!0.60!4.69!MSC;;chr14:62213758..62213774,+!p8@HIF1A!0.60!4.02!HIF1A;;chr14:75745523..75745537,+!p1@FOS!0.59!430.59!FOS;;chr19:45251943..45252006,+!p1@BCL3!0.59!93.23!BCL3;;chr7:149470641..149470694,-!p1@ZNF467!0.59!15.43!ZNF467;;chr12:104532004..104532033,-!p4@NFYB!0.59!9.39!NFYB;;chr10:51572339..51572376,+!p4@NCOA4!0.59!7.38!NCOA4;;chr2:145282041..145282092,-!p8@ZEB2!0.59!4.69!ZEB2;;chr8:72756637..72756664,-!p3@MSC!0.59!3.35!MSC;;chr11:47279248..47279264,+!p3@NR1H3!0.59!3.35!NR1H3;;chr9:14083467..14083483,-!p4@NFIB!0.58!8.05!NFIB;;chr8:116681123..116681143,-!p4@TRPS1!0.58!6.04!TRPS1;;chr2:28618532..28618610,+!p4@FOSL2!0.58!5.37!FOSL2;;chr17:46622114..46622138,-!p4@HOXB2!0.58!4.69!HOXB2;;chr12:53614115..53614154,-!p1@RARG!0.57!17.44!RARG;;chr20:42543441..42543497,+!p1@TOX2!0.57!14.76!TOX2;;chr19:13134457..13134462,+!p5@NFIX!0.57!5.37!NFIX;;chr7:100076723..100076737,-!p3@TSC22D4!0.57!4.69!TSC22D4;;chr17:46621279..46621297,-!p13@HOXB2!0.57!2.68!HOXB2;;chr2:85980768..85980783,+!p10@ATOH8!0.57!2.68!ATOH8;;chr19:47523058..47523114,+!p1@NPAS1!0.57!2.68!NPAS1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.57!2.68!ZSCAN1;;chr1:217262933..217262968,-!p3@ESRRG!0.57!2.68!ESRRG;;chr1:44513995..44514031,+!p1@KLF17!0.57!2.68!KLF17;;chr13:37494275..37494304,-!p2@SMAD9!0.57!2.68!SMAD9;;chr14:62214151..62214164,+!p11@HIF1A!0.57!2.68!HIF1A;;chr9:16705069..16705086,-!p3@BNC2!0.57!2.68!BNC2;;chr12:66218598..66218645,+!p2@HMGA2!0.56!14.76!HMGA2;;chr20:42543506..42543549,+!p2@TOX2!0.56!7.38!TOX2;;chr1:61924375..61924380,+!p6@NFIA!0.56!4.02!NFIA;;chr4:146436110..146436135,+!p6@SMAD1!0.56!4.02!SMAD1;;chr9:73028814..73028895,-!p1@KLF9!0.55!31.52!KLF9;;chr19:46272462..46272562,-!p1@SIX5!0.55!12.74!SIX5;;chr18:56532100..56532130,+!p1@ZNF532!0.55!5.37!ZNF532;;chr9:14082760..14082775,-!p6@NFIB!0.55!4.69!NFIB;;chr3:168864315..168864339,-!p2@MECOM!0.55!4.69!MECOM;;chr20:6748325..6748352,+!p1@BMP2!0.55!4.02!BMP2;;chr15:37392094..37392116,-!p6@MEIS2!0.55!3.35!MEIS2;;chr6:144329384..144329405,-!p1@PLAGL1!0.54!36.22!PLAGL1;;chr12:66218183..66218209,+!p4@HMGA2!0.54!5.37!HMGA2;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.54!4.69!MEIS3P1;;chr2:166326200..166326216,+!p1@CSRNP3!0.54!4.02!CSRNP3;;chr6:21597431..21597447,+!p8@SOX4!0.54!3.35!SOX4;;chr5:176738887..176738934,-!p1@MXD3!0.53!20.12!MXD3;;chr12:3069037..3069119,+!p2@TEAD4!0.53!10.06!TEAD4;;chr14:24837368..24837401,+!p1@NFATC4!0.53!6.71!NFATC4;;chr3:168865194..168865245,-!p3@MECOM!0.53!3.35!MECOM;;chr15:37392534..37392562,-!p10@MEIS2!0.53!2.68!MEIS2;;chr19:13213511..13213545,-!p2@LYL1!0.53!2.68!LYL1;;chr12:66218836..66218888,+!p1@HMGA2!0.52!27.50!HMGA2;;chr4:146402795..146402816,+!p7@SMAD1!0.52!3.35!SMAD1;;chr1:23886132..23886156,-!p2@ID3!0.52!2.68!ID3;;chr12:104531945..104531996,-!p1@NFYB!0.51!40.24!NFYB;;chr19:49865646..49865718,-!p1@TEAD2!0.51!24.82!TEAD2;;chr19:46272106..46272115,-!p3@SIX5!0.51!7.38!SIX5;;chr5:158526917..158526932,-!p1@EBF1!0.51!6.71!EBF1;;chr3:12329397..12329433,+!p2@PPARG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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000737;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000513 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11605-120I3 | |id=FF:11605-120I3 | ||
|is_a=EFO:0002091;;FF:0000118 | |is_a=EFO:0002091;;FF:0000118 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12350 | |||
|library_id_phase_based=2:CNhs12350 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11605 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11605 | |||
|name=Cardiac Myocyte, donor2 | |name=Cardiac Myocyte, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12350,LSID913,release011,COMPLETED | |profile_hcage=CNhs12350,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC6205 | |rna_catalog_number=SC6205 | ||
Line 60: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 101: | ||
|top_motifs=RXR{A,B,G}:2.23493134038;IKZF1:1.78430268538;GLI1..3:1.546699879;RXRA_VDR{dimer}:1.44698037016;NR1H4:1.36844524021;NR6A1:1.32922538232;HOX{A5,B5}:1.29585919961;TFAP4:1.12565044916;ZNF238:1.0483507953;EN1,2:1.04234675105;SMAD1..7,9:1.02637338162;NKX2-1,4:0.995234650863;AR:0.986181507388;UFEwm:0.973222684154;CRX:0.955894571712;EBF1:0.861792831391;CDC5L:0.851733036196;FOXP3:0.81820245924;TLX1..3_NFIC{dimer}:0.815445070353;GTF2A1,2:0.813917818847;MYBL2:0.807637186923;NKX2-2,8:0.766233273467;EVI1:0.754432004036;STAT5{A,B}:0.751840863959;TEF:0.73703563523;XBP1:0.723471604062;LHX3,4:0.702493460893;NANOG{mouse}:0.697481218055;NKX3-1:0.691864403864;PAX5:0.655859855701;SOX17:0.607084989418;SRF:0.601199251603;ZIC1..3:0.583298312945;TFCP2:0.5720629131;ALX4:0.554843320664;KLF4:0.549442833866;GZF1:0.547175856982;STAT2,4,6:0.543859560819;HSF1,2:0.542436842939;GFI1B:0.537750860166;NFATC1..3:0.527817800367;NR3C1:0.511225294162;ESR1:0.486432374052;PBX1:0.479643948527;TEAD1:0.463782263796;DBP:0.45015395973;PATZ1:0.449831488376;NR5A1,2:0.440266739956;ESRRA:0.438311109028;GFI1:0.435033943917;GATA6:0.431884911527;GTF2I:0.424618548612;ONECUT1,2:0.415547984111;ATF6:0.401183720092;TBP:0.389410668228;PAX8:0.373221871668;FOXD3:0.36668128164;HOX{A4,D4}:0.354391215476;T:0.315312390524;TAL1_TCF{3,4,12}:0.310235133746;NFE2L2:0.301665046208;FOXO1,3,4:0.30044617254;SOX2:0.300245977954;ZNF423:0.292219016057;STAT1,3:0.245250501161;HNF4A_NR2F1,2:0.23893557884;SPZ1:0.23869434954;XCPE1{core}:0.237223285666;ZNF148:0.221072161065;VSX1,2:0.21432027547;SOX5:0.195238810769;MAZ:0.186522380675;PAX1,9:0.168567237161;ZNF384:0.160971947893;NKX6-1,2:0.152172567319;ZBTB6:0.125689029806;SOX{8,9,10}:0.0951876782167;LEF1_TCF7_TCF7L1,2:0.0925985098532;TOPORS:0.0807262596398;TP53:0.077922413605;CEBPA,B_DDIT3:0.0664215043111;RFX1:0.0486146873881;HAND1,2:0.0429365361361;HNF1A:0.0393360518777;FOX{F1,F2,J1}:0.0379282260488;RBPJ:0.0377853402725;REST:0.0376897211125;CDX1,2,4:-0.0080621461319;GATA4:-0.0143314839131;NFE2:-0.0200380479424;HIC1:-0.0259020273169;MAFB:-0.0281802184261;ARID5B:-0.0398558922284;POU2F1..3:-0.0405263248855;NFIX:-0.0450562519949;MYFfamily:-0.0672760474916;NHLH1,2:-0.067828086099;AIRE:-0.0725948488768;HOXA9_MEIS1:-0.0764922838191;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0769577848966;HES1:-0.0899458534545;MZF1:-0.0991995573888;HBP1_HMGB_SSRP1_UBTF:-0.107750715205;E2F1..5:-0.12370907083;HLF:-0.125157518846;FOXA2:-0.125299775218;TLX2:-0.125613534324;FOXM1:-0.13696748048;PRRX1,2:-0.142537813872;EGR1..3:-0.143647378077;HMGA1,2:-0.162186656797;ZNF143:-0.162627164565;NFE2L1:-0.168822528407;NFY{A,B,C}:-0.170703362352;PRDM1:-0.176941032864;SP1:-0.18373885534;MEF2{A,B,C,D}:-0.184561260375;DMAP1_NCOR{1,2}_SMARC:-0.188377784155;ETS1,2:-0.191180992152;NFKB1_REL_RELA:-0.193326395853;BACH2:-0.195106304226;TFAP2{A,C}:-0.202474782264;NANOG:-0.208649149794;SPIB:-0.221364902214;NKX3-2:-0.224192540949;PAX3,7:-0.224463300627;ZBTB16:-0.225619809705;FOXQ1:-0.225970572183;YY1:-0.227605793477;AHR_ARNT_ARNT2:-0.246998772247;IRF7:-0.248873424517;TFDP1:-0.257258525129;FOS_FOS{B,L1}_JUN{B,D}:-0.266203200528;IRF1,2:-0.278123072761;PPARG:-0.278310646576;POU5F1:-0.279282269017;bHLH_family:-0.28128240167;EP300:-0.288202930491;POU3F1..4:-0.299762718069;ALX1:-0.303057795192;RREB1:-0.31014743959;RUNX1..3:-0.311729063101;ELK1,4_GABP{A,B1}:-0.316239416148;FOX{I1,J2}:-0.331639132265;FOSL2:-0.343173587809;SPI1:-0.35489296889;MTE{core}:-0.357868970906;MED-1{core}:-0.359895372758;ZFP161:-0.37550060836;FOX{D1,D2}:-0.383589222806;POU6F1:-0.418035999519;ELF1,2,4:-0.421774745877;HIF1A:-0.44226701421;JUN:-0.447254925423;MTF1:-0.457293229197;HMX1:-0.464142667604;BPTF:-0.475633226058;PAX6:-0.505364173553;PAX2:-0.533588474154;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.543477210043;TBX4,5:-0.549894244743;POU1F1:-0.577742688991;NFIL3:-0.583678227305;ATF4:-0.589396133952;TFAP2B:-0.591362556521;IKZF2:-0.597671205102;FOXL1:-0.61091274257;CUX2:-0.622693779831;RORA:-0.623111467775;ATF5_CREB3:-0.629692855571;NKX2-3_NKX2-5:-0.644870336055;NRF1:-0.648355543864;GCM1,2:-0.667330925474;MYB:-0.667593403051;BREu{core}:-0.66788831609;TGIF1:-0.738490909864;SREBF1,2:-0.756306352374;FOXP1:-0.759940504655;PAX4:-0.764316619552;OCT4_SOX2{dimer}:-0.766183665847;ZEB1:-0.798865667946;RFX2..5_RFXANK_RFXAP:-0.821984811836;SNAI1..3:-0.847988063031;CREB1:-0.864106493799;LMO2:-0.888083286487;ADNP_IRX_SIX_ZHX:-0.925754271195;ATF2:-1.00576950853;FOXN1:-1.08285956845;MYOD1:-1.1569258687;PITX1..3:-1.21762779031;PDX1:-1.30409188932;HOX{A6,A7,B6,B7}:-2.24404779627 | |top_motifs=RXR{A,B,G}:2.23493134038;IKZF1:1.78430268538;GLI1..3:1.546699879;RXRA_VDR{dimer}:1.44698037016;NR1H4:1.36844524021;NR6A1:1.32922538232;HOX{A5,B5}:1.29585919961;TFAP4:1.12565044916;ZNF238:1.0483507953;EN1,2:1.04234675105;SMAD1..7,9:1.02637338162;NKX2-1,4:0.995234650863;AR:0.986181507388;UFEwm:0.973222684154;CRX:0.955894571712;EBF1:0.861792831391;CDC5L:0.851733036196;FOXP3:0.81820245924;TLX1..3_NFIC{dimer}:0.815445070353;GTF2A1,2:0.813917818847;MYBL2:0.807637186923;NKX2-2,8:0.766233273467;EVI1:0.754432004036;STAT5{A,B}:0.751840863959;TEF:0.73703563523;XBP1:0.723471604062;LHX3,4:0.702493460893;NANOG{mouse}:0.697481218055;NKX3-1:0.691864403864;PAX5:0.655859855701;SOX17:0.607084989418;SRF:0.601199251603;ZIC1..3:0.583298312945;TFCP2:0.5720629131;ALX4:0.554843320664;KLF4:0.549442833866;GZF1:0.547175856982;STAT2,4,6:0.543859560819;HSF1,2:0.542436842939;GFI1B:0.537750860166;NFATC1..3:0.527817800367;NR3C1:0.511225294162;ESR1:0.486432374052;PBX1:0.479643948527;TEAD1:0.463782263796;DBP:0.45015395973;PATZ1:0.449831488376;NR5A1,2:0.440266739956;ESRRA:0.438311109028;GFI1:0.435033943917;GATA6:0.431884911527;GTF2I:0.424618548612;ONECUT1,2:0.415547984111;ATF6:0.401183720092;TBP:0.389410668228;PAX8:0.373221871668;FOXD3:0.36668128164;HOX{A4,D4}:0.354391215476;T:0.315312390524;TAL1_TCF{3,4,12}:0.310235133746;NFE2L2:0.301665046208;FOXO1,3,4:0.30044617254;SOX2:0.300245977954;ZNF423:0.292219016057;STAT1,3:0.245250501161;HNF4A_NR2F1,2:0.23893557884;SPZ1:0.23869434954;XCPE1{core}:0.237223285666;ZNF148:0.221072161065;VSX1,2:0.21432027547;SOX5:0.195238810769;MAZ:0.186522380675;PAX1,9:0.168567237161;ZNF384:0.160971947893;NKX6-1,2:0.152172567319;ZBTB6:0.125689029806;SOX{8,9,10}:0.0951876782167;LEF1_TCF7_TCF7L1,2:0.0925985098532;TOPORS:0.0807262596398;TP53:0.077922413605;CEBPA,B_DDIT3:0.0664215043111;RFX1:0.0486146873881;HAND1,2:0.0429365361361;HNF1A:0.0393360518777;FOX{F1,F2,J1}:0.0379282260488;RBPJ:0.0377853402725;REST:0.0376897211125;CDX1,2,4:-0.0080621461319;GATA4:-0.0143314839131;NFE2:-0.0200380479424;HIC1:-0.0259020273169;MAFB:-0.0281802184261;ARID5B:-0.0398558922284;POU2F1..3:-0.0405263248855;NFIX:-0.0450562519949;MYFfamily:-0.0672760474916;NHLH1,2:-0.067828086099;AIRE:-0.0725948488768;HOXA9_MEIS1:-0.0764922838191;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0769577848966;HES1:-0.0899458534545;MZF1:-0.0991995573888;HBP1_HMGB_SSRP1_UBTF:-0.107750715205;E2F1..5:-0.12370907083;HLF:-0.125157518846;FOXA2:-0.125299775218;TLX2:-0.125613534324;FOXM1:-0.13696748048;PRRX1,2:-0.142537813872;EGR1..3:-0.143647378077;HMGA1,2:-0.162186656797;ZNF143:-0.162627164565;NFE2L1:-0.168822528407;NFY{A,B,C}:-0.170703362352;PRDM1:-0.176941032864;SP1:-0.18373885534;MEF2{A,B,C,D}:-0.184561260375;DMAP1_NCOR{1,2}_SMARC:-0.188377784155;ETS1,2:-0.191180992152;NFKB1_REL_RELA:-0.193326395853;BACH2:-0.195106304226;TFAP2{A,C}:-0.202474782264;NANOG:-0.208649149794;SPIB:-0.221364902214;NKX3-2:-0.224192540949;PAX3,7:-0.224463300627;ZBTB16:-0.225619809705;FOXQ1:-0.225970572183;YY1:-0.227605793477;AHR_ARNT_ARNT2:-0.246998772247;IRF7:-0.248873424517;TFDP1:-0.257258525129;FOS_FOS{B,L1}_JUN{B,D}:-0.266203200528;IRF1,2:-0.278123072761;PPARG:-0.278310646576;POU5F1:-0.279282269017;bHLH_family:-0.28128240167;EP300:-0.288202930491;POU3F1..4:-0.299762718069;ALX1:-0.303057795192;RREB1:-0.31014743959;RUNX1..3:-0.311729063101;ELK1,4_GABP{A,B1}:-0.316239416148;FOX{I1,J2}:-0.331639132265;FOSL2:-0.343173587809;SPI1:-0.35489296889;MTE{core}:-0.357868970906;MED-1{core}:-0.359895372758;ZFP161:-0.37550060836;FOX{D1,D2}:-0.383589222806;POU6F1:-0.418035999519;ELF1,2,4:-0.421774745877;HIF1A:-0.44226701421;JUN:-0.447254925423;MTF1:-0.457293229197;HMX1:-0.464142667604;BPTF:-0.475633226058;PAX6:-0.505364173553;PAX2:-0.533588474154;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.543477210043;TBX4,5:-0.549894244743;POU1F1:-0.577742688991;NFIL3:-0.583678227305;ATF4:-0.589396133952;TFAP2B:-0.591362556521;IKZF2:-0.597671205102;FOXL1:-0.61091274257;CUX2:-0.622693779831;RORA:-0.623111467775;ATF5_CREB3:-0.629692855571;NKX2-3_NKX2-5:-0.644870336055;NRF1:-0.648355543864;GCM1,2:-0.667330925474;MYB:-0.667593403051;BREu{core}:-0.66788831609;TGIF1:-0.738490909864;SREBF1,2:-0.756306352374;FOXP1:-0.759940504655;PAX4:-0.764316619552;OCT4_SOX2{dimer}:-0.766183665847;ZEB1:-0.798865667946;RFX2..5_RFXANK_RFXAP:-0.821984811836;SNAI1..3:-0.847988063031;CREB1:-0.864106493799;LMO2:-0.888083286487;ADNP_IRX_SIX_ZHX:-0.925754271195;ATF2:-1.00576950853;FOXN1:-1.08285956845;MYOD1:-1.1569258687;PITX1..3:-1.21762779031;PDX1:-1.30409188932;HOX{A6,A7,B6,B7}:-2.24404779627 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11605-120I3;search_select_hide=table117:FF:11605-120I3 | |||
}} | }} |
Latest revision as of 18:11, 4 June 2020
Name: | Cardiac Myocyte, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12350 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12350
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12350
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.4 |
10 | 10 | 0.862 |
100 | 100 | 0.748 |
101 | 101 | 0.604 |
102 | 102 | 0.175 |
103 | 103 | 0.162 |
104 | 104 | 0.264 |
105 | 105 | 0.811 |
106 | 106 | 0.0359 |
107 | 107 | 0.00472 |
108 | 108 | 0.316 |
109 | 109 | 0.778 |
11 | 11 | 0.127 |
110 | 110 | 0.1 |
111 | 111 | 0.0841 |
112 | 112 | 0.446 |
113 | 113 | 0.0873 |
114 | 114 | 0.603 |
115 | 115 | 0.312 |
116 | 116 | 0.0526 |
117 | 117 | 0.334 |
118 | 118 | 0.794 |
119 | 119 | 0.941 |
12 | 12 | 0.297 |
120 | 120 | 0.0828 |
121 | 121 | 0.182 |
122 | 122 | 0.369 |
123 | 123 | 0.00414 |
124 | 124 | 0.375 |
125 | 125 | 0.83 |
126 | 126 | 0.443 |
127 | 127 | 0.14 |
128 | 128 | 0.00932 |
129 | 129 | 0.919 |
13 | 13 | 0.799 |
130 | 130 | 0.118 |
131 | 131 | 0.795 |
132 | 132 | 0.317 |
133 | 133 | 0.383 |
134 | 134 | 0.381 |
135 | 135 | 0.434 |
136 | 136 | 0.49 |
137 | 137 | 0.481 |
138 | 138 | 0.748 |
139 | 139 | 0.538 |
14 | 14 | 0.678 |
140 | 140 | 0.879 |
141 | 141 | 0.39 |
142 | 142 | 0.309 |
143 | 143 | 0.364 |
144 | 144 | 0.124 |
145 | 145 | 0.283 |
146 | 146 | 0.105 |
147 | 147 | 0.242 |
148 | 148 | 0.496 |
149 | 149 | 0.0752 |
15 | 15 | 0.494 |
150 | 150 | 0.217 |
151 | 151 | 0.485 |
152 | 152 | 0.185 |
153 | 153 | 0.846 |
154 | 154 | 0.389 |
155 | 155 | 0.0343 |
156 | 156 | 0.58 |
157 | 157 | 0.699 |
158 | 158 | 0.00543 |
159 | 159 | 0.152 |
16 | 16 | 0.0782 |
160 | 160 | 0.0626 |
161 | 161 | 0.881 |
162 | 162 | 0.311 |
163 | 163 | 0.844 |
164 | 164 | 0.375 |
165 | 165 | 0.996 |
166 | 166 | 0.105 |
167 | 167 | 0.197 |
168 | 168 | 0.644 |
169 | 169 | 0.0582 |
17 | 17 | 0.845 |
18 | 18 | 0.281 |
19 | 19 | 0.0474 |
2 | 2 | 0.212 |
20 | 20 | 0.331 |
21 | 21 | 0.393 |
22 | 22 | 0.18 |
23 | 23 | 0.166 |
24 | 24 | 0.531 |
25 | 25 | 0.617 |
26 | 26 | 0.111 |
27 | 27 | 0.407 |
28 | 28 | 0.359 |
29 | 29 | 0.254 |
3 | 3 | 0.276 |
30 | 30 | 0.326 |
31 | 31 | 0.864 |
32 | 32 | 1.28563e-10 |
33 | 33 | 0.33 |
34 | 34 | 0.116 |
35 | 35 | 0.499 |
36 | 36 | 0.872 |
37 | 37 | 0.2 |
38 | 38 | 0.76 |
39 | 39 | 0.0352 |
4 | 4 | 0.163 |
40 | 40 | 0.893 |
41 | 41 | 0.605 |
42 | 42 | 0.702 |
43 | 43 | 0.166 |
44 | 44 | 0.0451 |
45 | 45 | 0.392 |
46 | 46 | 0.137 |
47 | 47 | 0.649 |
48 | 48 | 0.377 |
49 | 49 | 0.38 |
5 | 5 | 0.342 |
50 | 50 | 0.336 |
51 | 51 | 0.486 |
52 | 52 | 0.433 |
53 | 53 | 0.382 |
54 | 54 | 0.915 |
55 | 55 | 0.843 |
56 | 56 | 0.875 |
57 | 57 | 0.682 |
58 | 58 | 0.992 |
59 | 59 | 0.0415 |
6 | 6 | 0.855 |
60 | 60 | 0.766 |
61 | 61 | 0.591 |
62 | 62 | 0.364 |
63 | 63 | 0.379 |
64 | 64 | 0.444 |
65 | 65 | 0.167 |
66 | 66 | 0.739 |
67 | 67 | 0.905 |
68 | 68 | 0.93 |
69 | 69 | 0.298 |
7 | 7 | 0.898 |
70 | 70 | 0.491 |
71 | 71 | 0.0649 |
72 | 72 | 0.6 |
73 | 73 | 0.12 |
74 | 74 | 0.257 |
75 | 75 | 0.501 |
76 | 76 | 0.561 |
77 | 77 | 0.127 |
78 | 78 | 0.911 |
79 | 79 | 0.117 |
8 | 8 | 0.0369 |
80 | 80 | 0.718 |
81 | 81 | 0.671 |
82 | 82 | 0.295 |
83 | 83 | 0.43 |
84 | 84 | 0.72 |
85 | 85 | 0.00899 |
86 | 86 | 0.758 |
87 | 87 | 0.0259 |
88 | 88 | 0.536 |
89 | 89 | 0.144 |
9 | 9 | 0.224 |
90 | 90 | 0.976 |
91 | 91 | 0.457 |
92 | 92 | 0.477 |
93 | 93 | 0.306 |
94 | 94 | 0.59 |
95 | 95 | 0.413 |
96 | 96 | 0.744 |
97 | 97 | 0.822 |
98 | 98 | 0.362 |
99 | 99 | 0.00408 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12350
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000118 human cardiac myocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000737 (striated muscle cell)
0000746 (cardiac muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000118 (human cardiac myocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000513 (cardiac muscle myoblast)