FF:10024-101D6: Difference between revisions

Latest revision as of 12:15, 3 June 2020

Name:	small intestine, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10630
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	small intestine
dev stage	15,40,85 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -15
catalog number	Cat:AM6000 Lot:0910061 -15
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004876

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10630		CAGE		DRX008724		DRR009596

Accession ID Hg19

Library id		BAM		CTSS
CNhs10630		DRZ001021		DRZ002406

Accession ID Hg38

Library id		BAM		CTSS
CNhs10630		DRZ012371		DRZ013756

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.119
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0323
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0.467
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0323
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.164
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0323
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0623
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0873
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.203
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.087
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.201
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.267
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0.515
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0323
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0323
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0623
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0302
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0.651
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	1.058
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.28
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0733
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0991
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0323
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0.0161
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.0323
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.277
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.305
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0.981
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.153
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0623
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0.0323
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0623
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0292
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0323
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0544
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0623
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.271
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0323
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0323
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0323
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.211
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0623
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.0473
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.248
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.0323
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.209
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.229
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.104
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.00297
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0323
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10630

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.907
MA0003.1	MA0003.1	0.0806
MA0004.1	MA0004.1	0.0964
MA0006.1	MA0006.1	0.0113
MA0007.1	MA0007.1	0.0241
MA0009.1	MA0009.1	0.44
MA0014.1	MA0014.1	0.539
MA0017.1	MA0017.1	1.22328e-36
MA0018.2	MA0018.2	0.142
MA0019.1	MA0019.1	0.0747
MA0024.1	MA0024.1	0.0506
MA0025.1	MA0025.1	0.823
MA0027.1	MA0027.1	0.745
MA0028.1	MA0028.1	0.00354
MA0029.1	MA0029.1	0.157
MA0030.1	MA0030.1	0.0427
MA0031.1	MA0031.1	0.0563
MA0035.2	MA0035.2	2.56289e-5
MA0038.1	MA0038.1	0.275
MA0039.2	MA0039.2	0.0249
MA0040.1	MA0040.1	0.49
MA0041.1	MA0041.1	0.738
MA0042.1	MA0042.1	0.668
MA0043.1	MA0043.1	0.0088
MA0046.1	MA0046.1	7.14573e-65
MA0047.2	MA0047.2	3.11653e-4
MA0048.1	MA0048.1	0.0045
MA0050.1	MA0050.1	4.79544e-7
MA0051.1	MA0051.1	4.31987e-5
MA0052.1	MA0052.1	0.426
MA0055.1	MA0055.1	0.0157
MA0057.1	MA0057.1	0.251
MA0058.1	MA0058.1	0.0787
MA0059.1	MA0059.1	0.0025
MA0060.1	MA0060.1	0.0468
MA0061.1	MA0061.1	3.75534e-4
MA0062.2	MA0062.2	0.00518
MA0065.2	MA0065.2	6.5988e-6
MA0066.1	MA0066.1	0.418
MA0067.1	MA0067.1	0.0924
MA0068.1	MA0068.1	0.974
MA0069.1	MA0069.1	0.588
MA0070.1	MA0070.1	0.964
MA0071.1	MA0071.1	0.445
MA0072.1	MA0072.1	0.184
MA0073.1	MA0073.1	0.916
MA0074.1	MA0074.1	0.63
MA0076.1	MA0076.1	0.00842
MA0077.1	MA0077.1	0.223
MA0078.1	MA0078.1	0.02
MA0079.2	MA0079.2	0.0503
MA0080.2	MA0080.2	0.0705
MA0081.1	MA0081.1	0.135
MA0083.1	MA0083.1	0.0456
MA0084.1	MA0084.1	0.267
MA0087.1	MA0087.1	0.135
MA0088.1	MA0088.1	0.325
MA0090.1	MA0090.1	0.76
MA0091.1	MA0091.1	0.858
MA0092.1	MA0092.1	0.937
MA0093.1	MA0093.1	0.0983
MA0099.2	MA0099.2	4.99044e-10
MA0100.1	MA0100.1	0.151
MA0101.1	MA0101.1	0.00317
MA0102.2	MA0102.2	0.935
MA0103.1	MA0103.1	8.60997e-6
MA0104.2	MA0104.2	4.60337e-5
MA0105.1	MA0105.1	5.86679e-5
MA0106.1	MA0106.1	0.00724
MA0107.1	MA0107.1	0.00394
MA0108.2	MA0108.2	3.08244e-6
MA0111.1	MA0111.1	0.929
MA0112.2	MA0112.2	0.0664
MA0113.1	MA0113.1	0.248
MA0114.1	MA0114.1	2.39961e-35
MA0115.1	MA0115.1	6.42133e-13
MA0116.1	MA0116.1	0.0442
MA0117.1	MA0117.1	0.15
MA0119.1	MA0119.1	0.884
MA0122.1	MA0122.1	0.745
MA0124.1	MA0124.1	0.673
MA0125.1	MA0125.1	0.439
MA0131.1	MA0131.1	0.275
MA0135.1	MA0135.1	0.0396
MA0136.1	MA0136.1	0.228
MA0137.2	MA0137.2	0.251
MA0138.2	MA0138.2	0.295
MA0139.1	MA0139.1	0.909
MA0140.1	MA0140.1	0.886
MA0141.1	MA0141.1	0.008
MA0142.1	MA0142.1	0.578
MA0143.1	MA0143.1	0.0759
MA0144.1	MA0144.1	0.109
MA0145.1	MA0145.1	0.0899
MA0146.1	MA0146.1	0.428
MA0147.1	MA0147.1	1.30709e-5
MA0148.1	MA0148.1	2.88111e-5
MA0149.1	MA0149.1	0.233
MA0150.1	MA0150.1	3.28503e-4
MA0152.1	MA0152.1	0.932
MA0153.1	MA0153.1	8.14286e-42
MA0154.1	MA0154.1	0.711
MA0155.1	MA0155.1	0.84
MA0156.1	MA0156.1	0.456
MA0157.1	MA0157.1	0.811
MA0159.1	MA0159.1	0.234
MA0160.1	MA0160.1	0.135
MA0162.1	MA0162.1	0.54
MA0163.1	MA0163.1	0.00298
MA0164.1	MA0164.1	0.0811
MA0258.1	MA0258.1	0.465
MA0259.1	MA0259.1	0.00565

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10630

Novel motif	Logo	P-value
1	1	0.451
10	10	0.163
100	100	0.364
101	101	0.77
102	102	0.109
103	103	0.575
104	104	0.957
105	105	0.127
106	106	0.144
107	107	0.0707
108	108	0.642
109	109	0.707
11	11	0.903
110	110	0.259
111	111	0.493
112	112	0.0967
113	113	0.662
114	114	0.689
115	115	0.769
116	116	0.695
117	117	0.0949
118	118	0.734
119	119	0.351
12	12	0.987
120	120	0.249
121	121	0.953
122	122	0.589
123	123	1
124	124	0.993
125	125	0.033
126	126	0.0579
127	127	0.805
128	128	0.0342
129	129	0.493
13	13	0.494
130	130	0.845
131	131	0.828
132	132	0.0601
133	133	0.0197
134	134	0.06
135	135	0.422
136	136	0.706
137	137	0.462
138	138	0.568
139	139	0.141
14	14	0.481
140	140	0.838
141	141	0.605
142	142	0.792
143	143	0.068
144	144	0.504
145	145	0.055
146	146	0.215
147	147	0.786
148	148	0.616
149	149	0.0444
15	15	0.431
150	150	0.919
151	151	0.575
152	152	0.0473
153	153	0.972
154	154	0.667
155	155	0.282
156	156	0.852
157	157	0.449
158	158	0.649
159	159	0.437
16	16	0.922
160	160	0.731
161	161	0.587
162	162	0.603
163	163	0.708
164	164	0.357
165	165	0.47
166	166	0.496
167	167	0.449
168	168	0.00733
169	169	0.247
17	17	0.474
18	18	0.00981
19	19	0.175
2	2	0.0109
20	20	0.171
21	21	0.535
22	22	0.425
23	23	0.287
24	24	0.768
25	25	0.773
26	26	0.794
27	27	0.421
28	28	0.805
29	29	0.0974
3	3	0.765
30	30	0.0207
31	31	0.869
32	32	0.495
33	33	0.744
34	34	0.352
35	35	0.565
36	36	0.0498
37	37	0.967
38	38	0.437
39	39	0.101
4	4	0.329
40	40	0.795
41	41	0.111
42	42	0.757
43	43	0.985
44	44	0.428
45	45	0.1
46	46	0.584
47	47	0.644
48	48	0.889
49	49	0.471
5	5	0.865
50	50	0.23
51	51	0.797
52	52	0.0298
53	53	0.347
54	54	0.569
55	55	0.928
56	56	0.671
57	57	0.201
58	58	0.595
59	59	0.362
6	6	0.882
60	60	0.106
61	61	0.832
62	62	0.998
63	63	0.662
64	64	0.924
65	65	0.394
66	66	0.0649
67	67	0.0775
68	68	0.543
69	69	0.981
7	7	0.772
70	70	0.587
71	71	0.436
72	72	0.712
73	73	0.363
74	74	0.284
75	75	0.102
76	76	0.0775
77	77	0.026
78	78	0.136
79	79	0.152
8	8	0.93
80	80	0.00717
81	81	0.252
82	82	0.967
83	83	0.79
84	84	0.821
85	85	0.18
86	86	0.97
87	87	0.569
88	88	0.461
89	89	0.754
9	9	0.475
90	90	0.101
91	91	0.725
92	92	0.205
93	93	0.293
94	94	0.0275
95	95	0.807
96	96	0.955
97	97	0.763
98	98	0.419
99	99	0.0858

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10630

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010024 human small intestine - adult sample
FF:0010048 human smooth muscle - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002108 (small intestine)
0001135 (smooth muscle tissue)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0001555 (digestive tract)
0002204 (musculoskeletal system)
0005409 (gastrointestinal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010024 (human small intestine - adult sample)
0010048 (human smooth muscle - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004876
+|accession_numbers=CAGE;DRX008724;DRR009596;DRZ001021;DRZ002406;DRZ012371;DRZ013756
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002108,UBERON:0001135,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0001555,UBERON:0002204,UBERON:0005409,UBERON:0000383
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:4153613..4153652,+!p1@CREB3L3!2.71!508.65!CREB3L3;;chr1:201979743..201979762,+!p1@ELF3!2.35!221.88!ELF3;;chr8:76452097..76452126,+!p2@HNF4G!2.27!183.91!HNF4G;;chr5:149546334..149546364,+!p1@CDX1!2.19!153.65!CDX1;;chr8:76319876..76319926,+!p1@HNF4G!2.17!147.56!HNF4G;;chr20:43029862..43029900,+!p1@HNF4A!1.93!83.81!HNF4A;;chr1:201979703..201979721,+!p2@ELF3!1.89!76.09!ELF3;;chr1:27240455..27240474,-!p1@NR0B2!1.88!75.55!NR0B2;;chr13:28543431..28543487,-!p1@CDX2!1.83!66.76!CDX2;;chr16:79634595..79634620,-!p2@MAF!1.81!113.60!MAF;;chr7:73038839..73038862,-!p1@MLXIPL!1.81!63.90!MLXIPL;;chr11:16419037..16419064,-!p3@SOX6!1.76!57.11!SOX6;;chr8:76452129..76452159,+!p5@HNF4G!1.75!55.49!HNF4G;;chr6:134210243..134210257,+!p1@TCF21!1.69!48.00!TCF21;;chr16:85932760..85932775,+!p1@IRF8!1.65!43.83!IRF8;;chr16:79634624..79634642,-!p1@MAF!1.63!156.28!MAF;;chr3:119500941..119500961,+!p1@NR1I2!1.59!37.74!NR1I2;;chr16:86544113..86544145,+!p1@FOXF1!1.58!45.76!FOXF1;;chr19:50922187..50922204,+!p1@SPIB!1.58!36.97!SPIB;;chr13:73633131..73633149,+!p1@KLF5!1.57!369.90!KLF5;;chr8:11561684..11561751,+!p1@GATA4!1.57!35.89!GATA4;;chr4:174451370..174451387,-!p1@HAND2!1.52!32.18!HAND2;;chr2:70142232..70142251,+!p1@MXD1!1.51!170.71!MXD1;;chr13:28543285..28543314,-!p2@CDX2!1.51!31.56!CDX2;;chr1:199996831..199996843,+!p4@NR5A2!1.51!31.49!NR5A2;;chr18:19749386..19749404,+!p2@GATA6!1.50!43.76!GATA6;;chr20:42984330..42984364,+!p2@HNF4A!1.49!29.87!HNF4A;;chr11:111249993..111250006,-!p1@POU2AF1!1.49!29.71!POU2AF1;;chr1:42801540..42801562,-!p4@FOXJ3!1.45!27.47!FOXJ3;;chr12:100897130..100897149,+!p3@NR1H4!1.44!26.32!NR1H4;;chr16:79634581..79634592,-!p4@MAF!1.43!25.85!MAF;;chr7:137620650..137620677,-!p3@CREB3L2!1.39!23.46!CREB3L2;;chr12:48298765..48298783,-!p2@VDR!1.37!46.30!VDR;;chr20:61051039..61051057,-!p1@GATA5!1.37!22.23!GATA5;;chr4:94749897..94749909,+!p1@ATOH1!1.34!20.91!ATOH1;;chr4:149363494..149363543,-!p1@NR3C2!1.33!20.53!NR3C2;;chrY:21906594..21906622,-!p1@KDM5D!1.33!20.30!KDM5D;;chr18:19749541..19749557,+!p1@GATA6!1.32!61.20!GATA6;;chr13:72441315..72441454,-!p1@DACH1!1.32!39.67!DACH1;;chr18:55102628..55102646,+!p2@ONECUT2!1.32!19.83!ONECUT2;;chr1:151804244..151804310,-!p1@RORC!1.32!19.68!RORC;;chr10:48355030..48355090,+!p1@ZNF488!1.30!24.46!ZNF488;;chr18:55102598..55102623,+!p1@ONECUT2!1.30!19.14!ONECUT2;;chr1:199996733..199996781,+!p1@NR5A2!1.29!18.60!NR5A2;;chr5:153857778..153857794,-!p1@HAND1!1.29!18.37!HAND1;;chr11:34664014..34664045,+!p4@EHF!1.28!17.90!EHF;;chr13:28543388..28543406,-!p3@CDX2!1.27!17.83!CDX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.26!24.54!ZBTB16;;chr4:149363475..149363492,-!p2@NR3C2!1.26!17.21!NR3C2;;chr6:391743..391759,+!p1@IRF4!1.26!17.13!IRF4;;chr11:113930291..113930339,+!p2@ZBTB16!1.25!27.01!ZBTB16;;chr8:71316428..71316459,-!p2@NCOA2!1.23!26.63!NCOA2;;chr1:209979467..209979494,-!p1@IRF6!1.22!17.36!IRF6;;chr6:34524093..34524135,-!p1@SPDEF!1.22!15.67!SPDEF;;chr11:47400078..47400106,-!p1@SPI1!1.22!15.67!SPI1;;chr20:62680984..62680999,-!p1@SOX18!1.21!19.91!SOX18;;chr6:1389789..1389821,+!p1@FOXF2!1.20!20.61!FOXF2;;chr13:28494130..28494168,+!p1@PDX1!1.20!14.74!PDX1;;chr12:121416340..121416360,+!p1@HNF1A!1.19!14.59!HNF1A;;chr11:61520075..61520136,+!p1@C11orf9!1.18!30.02!C11orf9;;chr4:57547454..57547469,-!p1@HOPX!1.17!13.89!HOPX;;chr1:25291475..25291511,-!p2@RUNX3!1.17!13.74!RUNX3;;chr20:50159198..50159299,-!p1@NFATC2!1.16!19.60!NFATC2;;chr19:33793430..33793447,-!p1@CEBPA!1.12!51.94!CEBPA;;chr3:12330560..12330579,+!p1@PPARG!1.12!14.12!PPARG;;chr17:38498594..38498661,+!p2@RARA!1.11!39.90!RARA;;chr10:101292684..101292706,+!p1@NKX2-3!1.11!11.96!NKX2-3;;chr2:46524897..46524911,+!p2@EPAS1!1.10!32.49!EPAS1;;chr19:46801639..46801699,+!p1@HIF3A!1.10!11.50!HIF3A;;chr13:28543253..28543276,-!p5@CDX2!1.09!11.42!CDX2;;chr8:11534438..11534451,+!p3@GATA4!1.09!11.19!GATA4;;chr19:46367576..46367592,+!p1@FOXA3!1.08!11.04!FOXA3;;chr11:65554528..65554546,+!p1@OVOL1!1.08!10.96!OVOL1;;chr7:137620684..137620711,-!p4@CREB3L2!1.08!10.96!CREB3L2;;chr8:102504651..102504683,+!p1@GRHL2!1.08!10.96!GRHL2;;chr12:52445218..52445237,+!p1@NR4A1!1.07!137.22!NR4A1;;chr3:119500891..119500904,+!p2@NR1I2!1.07!10.73!NR1I2;;chr3:141868230..141868250,-!p6@TFDP2!1.06!12.66!TFDP2;;chr13:28543316..28543329,-!p4@CDX2!1.05!10.26!CDX2;;chr1:10856639..10856662,-!p2@CASZ1!1.05!10.19!CASZ1;;chr1:10856665..10856683,-!p4@CASZ1!1.04!10.03!CASZ1;;chr11:129245526..129245553,+!p1@BARX2!1.04!10.03!BARX2;;chr1:200011711..200011752,+!p3@NR5A2!1.04!9.96!NR5A2;;chr11:34642612..34642646,+!p1@EHF!1.03!9.80!EHF;;chr1:10754477..10754517,-!p1@CASZ1!1.02!16.05!CASZ1;;chr11:34645791..34645836,+!p3@EHF!1.02!9.57!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.02!9.49!IRF6;;chr21:39870339..39870443,-!p1@ERG!1.02!9.49!ERG;;chr3:141043020..141043049,+!p17@ZBTB38!1.02!9.42!ZBTB38;;chr16:79634464..79634493,-!p5@MAF!1.02!9.42!MAF;;chr10:51572408..51572454,+!p3@NCOA4!1.01!54.95!NCOA4;;chr2:60780753..60780800,-!p1@BCL11A!1.01!46.23!BCL11A;;chr1:214161272..214161322,+!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002108;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/small%2520intestine%252c%2520adult%252c%2520pool1.CNhs10630.10024-101D6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/small%2520intestine%252c%2520adult%252c%2520pool1.CNhs10630.10024-101D6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/small%2520intestine%252c%2520adult%252c%2520pool1.CNhs10630.10024-101D6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/small%2520intestine%252c%2520adult%252c%2520pool1.CNhs10630.10024-101D6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/small%2520intestine%252c%2520adult%252c%2520pool1.CNhs10630.10024-101D6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10024-101D6
 |is_a=EFO:0002091;;FF:0010024;;FF:0010048
 |is_obsolete=
+|library_id=CNhs10630
+|library_id_phase_based=2:CNhs10630
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10024
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10024
 |name=small intestine, adult, pool1
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10630,LSID657,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:AM6000 Lot:0910061 -15
@@ Line 61: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 82: / Line 101: @@
 |top_motifs=HNF4A_NR2F1,2:8.68164985908;HNF1A:5.13664889563;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.9669383434;GATA6:2.92780447857;SNAI1..3:2.59927278575;ZEB1:2.43873737324;ESRRA:2.18026934664;NR6A1:1.98173712288;SPZ1:1.96763083435;MTF1:1.89769652247;T:1.79370700629;NR1H4:1.78462338244;ADNP_IRX_SIX_ZHX:1.7795099758;SP1:1.74788385533;AR:1.7021020898;FOXA2:1.696272148;MYOD1:1.55392883068;RBPJ:1.55163902476;XCPE1{core}:1.41247040603;TFCP2:1.36520017167;TBP:1.3518302981;FOXL1:1.25419430968;EP300:1.15697913463;FOX{D1,D2}:1.13768626904;MAZ:1.13468184782;TFAP2{A,C}:1.10947548648;LMO2:1.09461070427;SRF:1.09076096607;ZNF148:1.07431186056;ATF6:1.06985927944;IRF1,2:1.03180201038;POU5F1:1.00164175914;NR3C1:0.995577419637;TBX4,5:0.991097053638;FOX{F1,F2,J1}:0.97980884312;MYBL2:0.965355281882;DMAP1_NCOR{1,2}_SMARC:0.937363872234;VSX1,2:0.924374228752;FOXO1,3,4:0.916921168141;MYFfamily:0.866770196893;PITX1..3:0.829245650651;TLX1..3_NFIC{dimer}:0.771419356735;IRF7:0.747799653007;NR5A1,2:0.733264299737;HMX1:0.728593217462;POU2F1..3:0.696455256739;FOXN1:0.652964505532;HIC1:0.64957974764;PAX6:0.632140410461;MED-1{core}:0.627179868924;PAX5:0.585754195268;GTF2I:0.583151096687;FOXD3:0.577546521205;PATZ1:0.562440297035;ESR1:0.558488791259;TFAP2B:0.558245972599;MTE{core}:0.526408168981;FOXP1:0.497738497607;ETS1,2:0.478359990067;NFATC1..3:0.47403197363;STAT1,3:0.454432065466;RREB1:0.403911836325;TLX2:0.368914302116;FOXM1:0.323191504231;SREBF1,2:0.316541320228;NKX6-1,2:0.280535177904;TFAP4:0.271884193857;LEF1_TCF7_TCF7L1,2:0.257815525124;SPIB:0.256197465101;ALX1:0.248599708485;EBF1:0.242936844399;STAT2,4,6:0.234835004213;DBP:0.22330752278;REST:0.219423670071;FOX{I1,J2}:0.214850439313;bHLH_family:0.195409475914;RXRA_VDR{dimer}:0.19170219359;ONECUT1,2:0.18071094454;SOX5:0.170073601533;HAND1,2:0.168856153912;NANOG:0.158225431644;PRDM1:0.147537037776;HOX{A6,A7,B6,B7}:0.124568470037;GTF2A1,2:0.114176847658;NHLH1,2:0.106579760886;IKZF1:0.106234220702;MAFB:0.101560589642;ZNF423:0.0998131711919;GZF1:0.095954968321;POU6F1:0.0938231350068;RUNX1..3:0.0377849464842;SPI1:0.0325038615865;ELF1,2,4:0.0283337723077;ZFP161:-0.00359081588732;HMGA1,2:-0.00762892505689;EGR1..3:-0.0124764053768;RFX2..5_RFXANK_RFXAP:-0.0212541679596;GFI1B:-0.0254190196322;IKZF2:-0.0296442589273;TEAD1:-0.030441795975;GCM1,2:-0.0306765495484;MZF1:-0.0362576090908;TGIF1:-0.036298973053;PBX1:-0.119410610258;ATF4:-0.122308267209;BREu{core}:-0.15170314185;SMAD1..7,9:-0.152453373047;CUX2:-0.156822046183;TOPORS:-0.167749608014;NFY{A,B,C}:-0.171432553778;JUN:-0.175162913528;NKX2-3_NKX2-5:-0.17894141678;RXR{A,B,G}:-0.197623959857;ZBTB6:-0.211101095608;PRRX1,2:-0.225090543429;ZNF143:-0.23078261251;ATF5_CREB3:-0.248372599552;ATF2:-0.261946180455;PAX1,9:-0.284374603194;KLF4:-0.297052184608;FOSL2:-0.314329500185;MEF2{A,B,C,D}:-0.324246692059;NFKB1_REL_RELA:-0.335372718532;NFE2:-0.343777616177;GFI1:-0.361621129445;CRX:-0.369605058362;ELK1,4_GABP{A,B1}:-0.372214827498;HLF:-0.380372709259;SOX2:-0.38415242984;NFIL3:-0.400976684423;FOXQ1:-0.443302565853;LHX3,4:-0.44528793169;PAX3,7:-0.453398911262;CDX1,2,4:-0.478614809529;EVI1:-0.509407687212;NKX3-2:-0.517583635138;NKX2-1,4:-0.518318743565;FOXP3:-0.52396025363;BACH2:-0.524365176203;OCT4_SOX2{dimer}:-0.526688230303;PAX2:-0.537508172001;FOS_FOS{B,L1}_JUN{B,D}:-0.542207412976;TFDP1:-0.544839928507;GLI1..3:-0.581795989449;NKX2-2,8:-0.633544788656;NRF1:-0.643733332802;E2F1..5:-0.662259371354;ZNF238:-0.665616133255;CDC5L:-0.665928178705;ZIC1..3:-0.67401639297;NFE2L2:-0.695428016946;TP53:-0.720870122299;SOX{8,9,10}:-0.733772044786;NFIX:-0.77628836289;TAL1_TCF{3,4,12}:-0.778752040902;RORA:-0.80009975245;UFEwm:-0.811744233358;XBP1:-0.82949807667;CREB1:-0.829561337688;HES1:-0.830340689918;POU1F1:-0.836392914482;HOX{A5,B5}:-0.852350267461;GATA4:-0.889482780428;CEBPA,B_DDIT3:-0.895045348602;ARID5B:-0.915347376348;SOX17:-0.919013301943;ALX4:-0.923551926586;YY1:-0.924371497693;BPTF:-0.947706396652;ZNF384:-0.960678204525;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.02077876011;TEF:-1.02604352855;NKX3-1:-1.10028531261;ZBTB16:-1.12591189512;NANOG{mouse}:-1.14094737116;MYB:-1.15889250661;AIRE:-1.16077394861;AHR_ARNT_ARNT2:-1.17724854296;HBP1_HMGB_SSRP1_UBTF:-1.19655275875;PDX1:-1.24513736426;EN1,2:-1.2864491539;RFX1:-1.32573818496;HOXA9_MEIS1:-1.35314410962;PAX8:-1.36815778177;PPARG:-1.39933490966;NFE2L1:-1.44731375286;HIF1A:-1.54180117376;POU3F1..4:-1.62359871775;HSF1,2:-1.78465099677;HOX{A4,D4}:-2.13383578284;PAX4:-2.335627364;STAT5{A,B}:-2.48565302756
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10024-101D6;search_select_hide=table117:FF:10024-101D6
 }}

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FF:10024-101D6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:15, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0