FFCP PHASE1:Hg19::chr3:197676750..197676802,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:197676750..197676802,-
|short_description=p1@IQCG
|description=CAGE_peak_1_at_IQCG_5end
|association_with_transcript=0bp_to_ENST00000453254,ENST00000455191...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84223 | |EntrezGene=84223 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25251 | |HGNC=25251 | ||
|TSSclassifier=strong | |||
|UniProt=C9JKX8,Q9H095,Q9H5C8 | |UniProt=C9JKX8,Q9H095,Q9H5C8 | ||
|association_with_transcript=0bp_to_ENST00000453254,ENST00000455191,ENST00000463651,NM_001134435,uc003fyo.2,uc003fyq.3_5end | |||
|cluster_id=chr3:197676750..197676802,- | |||
|coexpression_cluster_id=C3459 | |||
|description=CAGE_peak_1_at_IQCG_5end | |||
|id=chr3:197676750..197676802,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!9.21e-13!143;DOID:305!1.79e-11!106;DOID:14566!4.35e-09!239;DOID:162!3.20e-08!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.98e-12,143;DOID:305,3.85e-11,106;DOID:14566,3.30e-08,239;DOID:162,2.22e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0005743!2.57e-17!86;UBERON:0000073!2.93e-17!94;UBERON:0001016!2.93e-17!94;UBERON:0001017!4.03e-17!82;UBERON:0000475!8.18e-16!365;UBERON:0001049!1.94e-15!57;UBERON:0005068!1.94e-15!57;UBERON:0006241!1.94e-15!57;UBERON:0007135!1.94e-15!57;UBERON:0000924!6.59e-15!173;UBERON:0006601!6.59e-15!173;UBERON:0004121!2.12e-14!169;UBERON:0000955!3.76e-14!69;UBERON:0006238!3.76e-14!69;UBERON:0002616!6.33e-14!59;UBERON:0002346!8.17e-14!90;UBERON:0003075!2.33e-13!86;UBERON:0007284!2.33e-13!86;UBERON:0002780!6.99e-13!41;UBERON:0001890!6.99e-13!41;UBERON:0006240!6.99e-13!41;UBERON:0003080!2.33e-12!42;UBERON:0000033!3.97e-12!123;UBERON:0000153!1.36e-11!129;UBERON:0007811!1.36e-11!129;UBERON:0000481!8.90e-10!347;UBERON:0003056!1.69e-09!61;UBERON:0002020!2.70e-09!34;UBERON:0003528!2.70e-09!34;UBERON:0001893!3.58e-09!34;UBERON:0002791!8.96e-09!33;UBERON:0001869!1.04e-08!32;UBERON:0000119!1.36e-08!312;UBERON:0000483!2.14e-08!309;UBERON:0000468!8.48e-07!659;UBERON:0000477!9.36e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;8.43e-10;53!UBERON:0002616;8.43e-10;53!UBERON:0002780;1.07e-09;41!UBERON:0001890;1.07e-09;41!UBERON:0001893;2.29e-08;34!UBERON:0003528;2.72e-08;34!UBERON:0002020;2.72e-08;34!UBERON:0001869;3.92e-08;32!UBERON:0002791;5.92e-08;32!UBERON:0000955;1.65e-07;68!UBERON:0001017;2.05e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.80e-18,81;UBERON:0001016,1.55e-17,89;UBERON:0001049,4.12e-16,56;UBERON:0005068,4.12e-16,56;UBERON:0006241,4.12e-16,56;UBERON:0007135,4.12e-16,56;UBERON:0000073,7.72e-15,53;UBERON:0002616,7.72e-15,53;UBERON:0000955,1.04e-14,68;UBERON:0006238,1.04e-14,68;UBERON:0004121,3.76e-14,171;UBERON:0000924,3.76e-14,171;UBERON:0006601,3.76e-14,171;UBERON:0010314,1.61e-13,132;UBERON:0002780,5.22e-13,41;UBERON:0001890,5.22e-13,41;UBERON:0003080,5.22e-13,41;UBERON:0006240,5.22e-13,41;UBERON:0002346,5.53e-13,86;UBERON:0003075,1.58e-12,82;UBERON:0007284,1.58e-12,82;UBERON:0011216,1.68e-12,223;UBERON:0010371,2.58e-10,104;UBERON:0003056,9.40e-10,61;UBERON:0003528,2.26e-09,34;UBERON:0002020,2.26e-09,34;UBERON:0001893,3.01e-09,34;UBERON:0001869,8.85e-09,32;UBERON:0002791,2.62e-08,32;UBERON:0000119,4.51e-07,309;UBERON:0000483,6.84e-07,306 | |||
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| ||
|short_description=p1@IQCG | |||
}} | }} |
Latest revision as of 17:36, 17 September 2015
Short description: | p1@IQCG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IQCG_5end |
Coexpression cluster: | C3459_lung_pituitary_trachea_testis_medulla_caudate_glassy |
Association with transcript: | 0bp_to_ENST00000453254, ENST00000455191, ENST00000463651, NM_001134435, uc003fyo.2, uc003fyq.3_5end |
EntrezGene: | IQCG |
HGNC: | 25251 |
UniProt: | C9JKX8Q9H095Q9H5C8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.80e-18 | 81 |
nervous system | 1.55e-17 | 89 |
neural tube | 4.12e-16 | 56 |
neural rod | 4.12e-16 | 56 |
future spinal cord | 4.12e-16 | 56 |
neural keel | 4.12e-16 | 56 |
regional part of nervous system | 7.72e-15 | 53 |
regional part of brain | 7.72e-15 | 53 |
brain | 1.04e-14 | 68 |
future brain | 1.04e-14 | 68 |
ectoderm-derived structure | 3.76e-14 | 171 |
ectoderm | 3.76e-14 | 171 |
presumptive ectoderm | 3.76e-14 | 171 |
structure with developmental contribution from neural crest | 1.61e-13 | 132 |
regional part of forebrain | 5.22e-13 | 41 |
forebrain | 5.22e-13 | 41 |
anterior neural tube | 5.22e-13 | 41 |
future forebrain | 5.22e-13 | 41 |
neurectoderm | 5.53e-13 | 86 |
neural plate | 1.58e-12 | 82 |
presumptive neural plate | 1.58e-12 | 82 |
organ system subdivision | 1.68e-12 | 223 |
ecto-epithelium | 2.58e-10 | 104 |
pre-chordal neural plate | 9.40e-10 | 61 |
brain grey matter | 2.26e-09 | 34 |
gray matter | 2.26e-09 | 34 |
telencephalon | 3.01e-09 | 34 |
cerebral hemisphere | 8.85e-09 | 32 |
regional part of telencephalon | 2.62e-08 | 32 |
cell layer | 4.51e-07 | 309 |
epithelium | 6.84e-07 | 306 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.98e-12 | 143 |
carcinoma | 3.85e-11 | 106 |
disease of cellular proliferation | 3.30e-08 | 239 |
cancer | 2.22e-07 | 235 |