FFCP PHASE1:Hg19::chr6:160137409..160137424,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:160137409..160137424,+
|short_description=p@chr6:160137409..160137424,+
|description=CAGE_peak_at_chr6:160137409..160137424,+
|association_with_transcript=...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr6:160137409..160137424,+ | |||
|coexpression_cluster_id=C575 | |||
|description=CAGE_peak_at_chr6:160137409..160137424,+ | |||
|id=chr6:160137409..160137424,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.11e-31!42;CL:0000860!3.17e-28!45;CL:0002194!1.93e-24!63;CL:0000576!1.93e-24!63;CL:0000040!1.93e-24!63;CL:0000559!1.93e-24!63;CL:0002009!2.74e-23!65;CL:0000766!5.05e-22!76;CL:0000839!1.04e-20!70;CL:0000557!3.09e-20!71;CL:0000763!3.50e-13!112;CL:0000049!3.50e-13!112;CL:0000738!2.36e-09!140;CL:0002087!8.44e-09!119;CL:0002031!8.86e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.90e-88;33!CL:0002057;4.90e-88;33!CL:0000473;7.45e-61;39!CL:0000234;7.45e-61;39!CL:0000576;1.82e-49;48!CL:0000766;5.78e-30;69!CL:0002087;2.42e-15;104!CL:0000763;1.81e-12;100!CL:0002393;1.71e-11;6!CL:0002397;1.71e-11;6!CL:0000738;3.22e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.20e-97,42;CL:0002057,1.20e-97,42;CL:0000473,5.69e-85,48;CL:0000234,5.69e-85,48;CL:0002194,3.23e-67,59;CL:0000576,3.23e-67,59;CL:0000040,3.23e-67,59;CL:0000559,3.23e-67,59;CL:0002009,6.33e-65,61;CL:0000839,8.57e-60,66;CL:0000557,7.40e-59,67;CL:0000766,1.46e-54,72;CL:0000763,3.04e-35,108;CL:0000049,3.04e-35,108;CL:0002087,7.07e-33,115;CL:0002031,2.36e-31,120;CL:0000738,3.20e-27,136;CL:0002032,2.15e-22,161;CL:0000837,2.15e-22,161;CL:0000037,2.69e-21,168;CL:0000988,5.18e-20,177;CL:0000134,7.24e-09,354;CL:0002320,1.31e-08,361;CL:0002393,7.37e-08,9;CL:0002397,7.37e-08,9;CL:0000219,1.06e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.29e-71;42!UBERON:0005425;1.78e-08;1!CL:0000049;6.61e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.36e-18!102;UBERON:0003061!6.36e-18!102;UBERON:0002193!1.08e-17!112;UBERON:0002371!1.48e-16!80;UBERON:0002405!8.60e-15!115;UBERON:0001474!1.48e-14!86;UBERON:0004765!2.77e-12!101;UBERON:0001434!2.77e-12!101;UBERON:0002204!4.20e-08!167;UBERON:0003081!6.82e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.78e-08;1!UBERON:0001785;1.78e-08;1!UBERON:0002464;1.78e-08;1!UBERON:0004904;1.78e-08;1!UBERON:0001021;1.78e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.59e-51,76;UBERON:0001474,1.61e-47,82;UBERON:0004765,5.36e-43,90;UBERON:0002405,1.69e-41,93;UBERON:0002390,3.33e-39,98;UBERON:0003061,3.33e-39,98;UBERON:0001434,2.38e-38,100;UBERON:0002193,3.04e-35,108;UBERON:0002204,1.90e-21,167;UBERON:0003081,6.20e-17,203;UBERON:0000926,1.67e-10,315;UBERON:0004120,1.67e-10,315;UBERON:0006603,1.67e-10,315;UBERON:0000941,1.91e-08,1;UBERON:0001785,1.91e-08,1;UBERON:0002464,1.91e-08,1;UBERON:0004904,1.91e-08,1;UBERON:0001021,1.91e-08,1;UBERON:0003902,1.91e-08,1;UBERON:0005425,1.91e-08,1;UBERON:0002384,2.94e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0.464448369948228,0,0,0,0,0,0,1.66198622559563,2.60707781711184,2.38711957787437,0,0,0,0.290796477559129,0,0.242584061187816,2.55671940596253,2.05583944010913,2.16794459626573,2.8769239232215,1.5369642391746,3.78371567821736,12.4108445065183,9.03678557017357,12.1883837934908,0.188242339542605,0.818718450173537,1.57306439111559,8.87643287875617,6.41858054152187,9.59005688698562,0.659702600373432,0.398927315243264,0.426224750532694,15.9615081245721,5.6738522469114,17.4390229718761,0.75374599577023,1.0429658368404,1.73751075764093,12.1079900526674,7.36555271975129,13.9243450473989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0.174129737299267,0.132957960518865,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0,0,0.213557388818567,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0.173767228936166,0,0,0,0.647142602455851,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0.200506470303285,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.330569830721956,0.384380134730212,0,0,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0.42793898803392,0,0,0,0,0.235624804691373,0,0,0,0,0.487426979262569,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0.0982490410131212,0,0,0,0.658589785919804,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0.593042257361244,0.123563938946503,0.104421949505455,0.202203398942031,0,0,0,0,0,0,0,0,0,25.7053047198782,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0.137041924646751,0,0,0.195551382734803,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0.235694034616795,0.135904206073614,0,0,0,0,0.273810757783986,0,0,0,0,0.229160424011684,0.717873024576814,0,0,0.223171457441873,0,0,0,0,0,0,0.196854963029498,0,0.795229689809303,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0.170388021785422,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0.1251909307065,0,0.110929051536852,0.0620964029413835,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0.457680136793847,0.302461847526478,0,0.443565449968902,0.955780602982214,0.449803112163605,0.155262956876259,0,0.265841714557995,0,0.150257608997218,0,0,0,0.214821114084977,1.39210127963548,0.398095888698616,0,0,0,0,0.192619830407303,0,0.260994291965212,0,0.231522474323834,0,0,0,0.438568099157414,0.176689145945881,0.578742114812744,0,0,0,0,0,0.194860308839388,0.531459361253452,0.327130788511688,0.982829546539238,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0.171488009437418,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62041277132864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0.490296643507811,0,0,0,0,0,0.0939839179798536,0.128915775947154,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0.213233981900981,0,0.0645889098360061,0.124149428591716,0,0,0,0,0,0.0673520530145875,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0.464448369948228,0,0,0,0,0,0,1.66198622559563,2.60707781711184,2.38711957787437,0,0,0,0.290796477559129,0,0.242584061187816,2.55671940596253,2.05583944010913,2.16794459626573,2.8769239232215,1.5369642391746,3.78371567821736,12.4108445065183,9.03678557017357,12.1883837934908,0.188242339542605,0.818718450173537,1.57306439111559,8.87643287875617,6.41858054152187,9.59005688698562,0.659702600373432,0.398927315243264,0.426224750532694,15.9615081245721,5.6738522469114,17.4390229718761,0.75374599577023,1.0429658368404,1.73751075764093,12.1079900526674,7.36555271975129,13.9243450473989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0.174129737299267,0.132957960518865,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0,0,0.213557388818567,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0.173767228936166,0,0,0,0.647142602455851,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0.200506470303285,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.330569830721956,0.384380134730212,0,0,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0.42793898803392,0,0,0,0,0.235624804691373,0,0,0,0,0.487426979262569,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0.0982490410131212,0,0,0,0.658589785919804,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0.593042257361244,0.123563938946503,0.104421949505455,0.202203398942031,0,0,0,0,0,0,0,0,0,25.7053047198782,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0.137041924646751,0,0,0.195551382734803,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0.235694034616795,0.135904206073614,0,0,0,0,0.273810757783986,0,0,0,0,0.229160424011684,0.717873024576814,0,0,0.223171457441873,0,0,0,0,0,0,0.196854963029498,0,0.795229689809303,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0.170388021785422,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0.1251909307065,0,0.110929051536852,0.0620964029413835,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0.457680136793847,0.302461847526478,0,0.443565449968902,0.955780602982214,0.449803112163605,0.155262956876259,0,0.265841714557995,0,0.150257608997218,0,0,0,0.214821114084977,1.39210127963548,0.398095888698616,0,0,0,0,0.192619830407303,0,0.260994291965212,0,0.231522474323834,0,0,0,0.438568099157414,0.176689145945881,0.578742114812744,0,0,0,0,0,0.194860308839388,0.531459361253452,0.327130788511688,0.982829546539238,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0.171488009437418,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62041277132864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0.490296643507811,0,0,0,0,0,0.0939839179798536,0.128915775947154,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0.213233981900981,0,0.0645889098360061,0.124149428591716,0,0,0,0,0,0.0673520530145875,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr6:160137409..160137424,+ | |||
}} | }} |
Latest revision as of 21:41, 30 July 2015
Short description: | p@chr6:160137409..160137424, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:160137409..160137424, + |
Coexpression cluster: | C575_embryonic_CD14_CD34_immature_chorionic_Mast_testis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.20e-97 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.20e-97 | 42 |
defensive cell | 5.69e-85 | 48 |
phagocyte | 5.69e-85 | 48 |
monopoietic cell | 3.23e-67 | 59 |
monocyte | 3.23e-67 | 59 |
monoblast | 3.23e-67 | 59 |
promonocyte | 3.23e-67 | 59 |
macrophage dendritic cell progenitor | 6.33e-65 | 61 |
myeloid lineage restricted progenitor cell | 8.57e-60 | 66 |
granulocyte monocyte progenitor cell | 7.40e-59 | 67 |
myeloid leukocyte | 1.46e-54 | 72 |
myeloid cell | 3.04e-35 | 108 |
common myeloid progenitor | 3.04e-35 | 108 |
nongranular leukocyte | 7.07e-33 | 115 |
hematopoietic lineage restricted progenitor cell | 2.36e-31 | 120 |
leukocyte | 3.20e-27 | 136 |
hematopoietic oligopotent progenitor cell | 2.15e-22 | 161 |
hematopoietic multipotent progenitor cell | 2.15e-22 | 161 |
hematopoietic stem cell | 2.69e-21 | 168 |
hematopoietic cell | 5.18e-20 | 177 |
mesenchymal cell | 7.24e-09 | 354 |
connective tissue cell | 1.31e-08 | 361 |
intermediate monocyte | 7.37e-08 | 9 |
CD14-positive, CD16-positive monocyte | 7.37e-08 | 9 |
motile cell | 1.06e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.59e-51 | 76 |
bone element | 1.61e-47 | 82 |
skeletal element | 5.36e-43 | 90 |
immune system | 1.69e-41 | 93 |
hematopoietic system | 3.33e-39 | 98 |
blood island | 3.33e-39 | 98 |
skeletal system | 2.38e-38 | 100 |
hemolymphoid system | 3.04e-35 | 108 |
musculoskeletal system | 1.90e-21 | 167 |
lateral plate mesoderm | 6.20e-17 | 203 |
mesoderm | 1.67e-10 | 315 |
mesoderm-derived structure | 1.67e-10 | 315 |
presumptive mesoderm | 1.67e-10 | 315 |
cranial nerve II | 1.91e-08 | 1 |
cranial nerve | 1.91e-08 | 1 |
nerve trunk | 1.91e-08 | 1 |
nerve connecting eye with brain | 1.91e-08 | 1 |
nerve | 1.91e-08 | 1 |
retinal neural layer | 1.91e-08 | 1 |
presumptive neural retina | 1.91e-08 | 1 |
connective tissue | 2.94e-08 | 371 |