FFCP PHASE1:Hg19::chr17:48133459..48133486,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3675 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6139 | |||
|TSSclassifier=strong | |||
|UniProt=P26006 | |||
|association_with_transcript=0bp_to_ENST00000320031_5end | |||
|cluster_id=chr17:48133459..48133486,+ | |||
|coexpression_cluster_id=C2418 | |||
|description=CAGE_peak_1_at_ITGA3_5end | |||
|id=chr17:48133459..48133486,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.67e-45!254;CL:0000220!6.13e-32!246;CL:0002321!3.49e-31!248;CL:0002076!1.79e-14!43;CL:0000076!1.26e-13!62;CL:0000222!2.48e-13!119;CL:0000223!2.45e-11!59;CL:0000055!9.40e-10!180;CL:0000548!1.14e-09!679;CL:0000004!1.14e-09!679;CL:0000255!1.14e-09!679;CL:1000497!1.76e-09!18;CL:0002518!1.76e-09!18;CL:0000012!8.02e-09!682;CL:1000449!9.89e-09!16;CL:0000077!1.02e-08!19;CL:0002368!3.97e-08!13;CL:0002077!9.09e-08!33;CL:1000507!1.82e-07!12;CL:1000494!1.82e-07!12;CL:0002681!5.81e-07!13;CL:0002584!5.81e-07!13;CL:0000075!7.12e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.92e-11;42!CL:1000497;7.78e-10;17!CL:0002518;7.78e-10;17!CL:1000449;4.37e-09;15!CL:0000077;8.72e-09;19!CL:0002368;3.41e-08;13!CL:1000507;7.73e-08;10!CL:1000494;7.73e-08;10!CL:0002681;2.80e-07;12!CL:0002584;2.80e-07;12!CL:0000075;6.31e-07;27!CL:0002077;7.56e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.93e-45,253;CL:0002321,1.74e-31,250;CL:0002076,1.06e-14,42;CL:0000222,1.34e-13,121;CL:0000076,2.05e-13,63;CL:0000223,1.48e-11,58;CL:1000497,8.00e-10,17;CL:0002518,8.00e-10,17;CL:1000449,4.46e-09,15;CL:0000077,8.75e-09,19;CL:0002368,3.44e-08,13;CL:1000507,7.80e-08,10;CL:1000494,7.80e-08,10;CL:0002077,1.36e-07,34;CL:0002681,2.85e-07,12;CL:0002584,2.85e-07,12;CL:0000075,6.34e-07,27;CL:0000213,8.78e-07,58;CL:0000215,8.78e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000223;8.32e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.10e-08!106;DOID:193!2.49e-08!29;DOID:120!3.17e-08!27 | |||
|ontology_enrichment_disease_v019=DOID:193;2.20e-08;29!DOID:120;2.77e-08;27 | |||
|ontology_enrichment_disease_v019_2=DOID:193,2.15e-08,29;DOID:305,2.25e-08,106;DOID:120,2.74e-08,27 | |||
|ontology_enrichment_uberon=UBERON:0000481!2.34e-20!347;UBERON:0003104!9.46e-19!238;UBERON:0009142!9.46e-19!238;UBERON:0000475!7.21e-17!365;UBERON:0002100!4.63e-15!216;UBERON:0000119!1.23e-14!312;UBERON:0000483!2.14e-14!309;UBERON:0001048!2.33e-13!168;UBERON:0004119!3.24e-13!169;UBERON:0000925!3.24e-13!169;UBERON:0006595!3.24e-13!169;UBERON:0000467!6.96e-13!625;UBERON:0005256!8.71e-13!143;UBERON:0000480!1.03e-12!626;UBERON:0000464!1.89e-12!104;UBERON:0000468!3.01e-12!659;UBERON:0000466!1.32e-11!126;UBERON:0003914!1.03e-10!118;UBERON:0001007!1.51e-09!155;UBERON:0001555!1.51e-09!155;UBERON:0007026!1.51e-09!155;UBERON:0000477!2.16e-09!286;UBERON:0000058!2.92e-09!26;UBERON:0005177!3.43e-09!107;UBERON:0000923!4.48e-09!604;UBERON:0005291!4.48e-09!604;UBERON:0006598!4.48e-09!604;UBERON:0002532!4.48e-09!604;UBERON:0002050!5.93e-09!605;UBERON:0005423!5.93e-09!605;UBERON:0004211!9.89e-09!16;UBERON:0001285!9.89e-09!16;UBERON:0007684!9.89e-09!16;UBERON:0003220!9.89e-09!16;UBERON:0004208!9.89e-09!16;UBERON:0000922!1.45e-08!612;UBERON:0000490!1.59e-08!138;UBERON:0005085!2.38e-08!29;UBERON:0006555!2.49e-08!17;UBERON:0005103!2.49e-08!17;UBERON:0000083!2.49e-08!17;UBERON:0009201!2.49e-08!17;UBERON:0004819!2.49e-08!17;UBERON:0006553!2.49e-08!17;UBERON:0003074!2.49e-08!17;UBERON:0003060!2.49e-08!17;UBERON:0000064!2.82e-08!219;UBERON:0002553!2.88e-08!70;UBERON:0000486!4.03e-08!82;UBERON:0000062!4.36e-08!511;UBERON:0003886!6.90e-08!63;UBERON:0002049!7.36e-08!79;UBERON:0007798!7.36e-08!79;UBERON:0000353!8.02e-08!17;UBERON:0000080!8.05e-08!18;UBERON:0002120!8.05e-08!18;UBERON:0004875!8.05e-08!18;UBERON:0005721!8.05e-08!18;UBERON:0005754!8.05e-08!18;UBERON:0007297!8.05e-08!18;UBERON:0003100!8.20e-08!41;UBERON:0004111!1.16e-07!241;UBERON:0006554!1.21e-07!44;UBERON:0004876!1.65e-07!20;UBERON:0009773!1.82e-07!12;UBERON:0001231!1.82e-07!12;UBERON:0004810!1.82e-07!12;UBERON:0001004!1.83e-07!72;UBERON:0001008!2.23e-07!45;UBERON:0003102!2.49e-07!95;UBERON:0003064!2.76e-07!37;UBERON:0001851!5.69e-07!16;UBERON:0001225!5.81e-07!13;UBERON:0008987!5.81e-07!13;UBERON:0000077!6.38e-07!130;UBERON:0000914!8.42e-07!83;UBERON:0002329!8.42e-07!83;UBERON:0003077!8.42e-07!83;UBERON:0003059!8.42e-07!83;UBERON:0007282!8.42e-07!83;UBERON:0009618!8.42e-07!83;UBERON:0007285!8.42e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;4.37e-09;15!UBERON:0004819;4.37e-09;15!UBERON:0001285;4.37e-09;15!UBERON:0007684;4.37e-09;15!UBERON:0006554;2.20e-08;30!UBERON:0001008;2.20e-08;30!UBERON:0000353;3.13e-08;15!UBERON:0004211;7.73e-08;10!UBERON:0009773;7.73e-08;10!UBERON:0001231;7.73e-08;10!UBERON:0004810;7.73e-08;10!UBERON:0010371;1.85e-07;31!UBERON:0001225;2.80e-07;12!UBERON:0008987;2.80e-07;12!UBERON:0001851;3.35e-07;15 | |||
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|phase1_expression=2.18014055124668,3.42560838225573,3.24195129420734,3.00219895059391,2.68176656656373,13.0850778615055,2.53299878168311,13.2661173419635,0.522371256399677,71.7543094584406,157.005262793796,66.6246184997025,127.135683506115,43.3182235360163,34.1339296999753,36.9778830548476,27.7239482891029,31.403333886657,27.8121695310589,30.9033855772738,72.6242460829541,14.7323719094701,28.9098347002367,81.9877806186576,39.5459314723629,1.91033514369878,1.80621296789881,1.8890587515283,0,0.383829398097213,0.464448369948228,159.979293059333,282.832357732777,349.047785597448,0,0,0,0,0,0.217010870715852,0,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0.889509253863555,0.853460445133014,1.20118796110804,0.574752439954483,0,0,0.569212969109448,1.17447437874188,0.764546456250458,0,0,0,0.590129310341499,0,2.05601498999509,4.51403537554831,0.651844533267181,0.473447805734733,0,1.6711568532776,2.3568472597987,1.99380505125259,1.08321545506006,2.94610035369053,2.34106825607781,1.64437904603676,1.10540007114339,1.44901542867526,0.444859689486181,0.535081656179426,0,0.906474741580529,0,1.37450978193052,0.759059076058509,0.318565414324097,0,0,0.301150238155546,0.639933055772092,0,0.710331756132051,0,0.604820229674197,0.802320587350522,0.434473211648397,14.6284119788377,19.4503249314054,29.7919769095426,7.95166135246046,10.0267582127178,10.8634889220618,4.7717156823066,6.8128881842369,54.2629850521749,73.6141599575712,67.8962893407864,20.8911625418852,428.41125903203,216.167330143322,9.08732702233113,7.13931922926996,10.6366368415092,0.238490624305342,0,0,20.2737655514039,18.0649264972286,28.8126616334303,27.1347812123525,36.0769515140519,25.5859779004263,31.5582399470584,41.3466814670926,38.066990107478,11.3805008339988,20.1414658554573,16.7259863258073,31.9721295388102,14.3388601334889,30.7853940195069,14.8237548951572,12.7981742396917,11.2611480483322,6.13266549863533,19.9345788509307,15.3889464901542,0,0,305.701930551917,22.8607097779847,37.1027399177219,28.467973874842,26.6758057296397,21.6347713140998,47.6575960120961,49.1045380356643,164.033919697411,13.0708634867902,39.3355162443489,35.634694878734,17.1033893238772,18.43762958336,17.5741073875347,29.0308871452198,41.6444429727448,14.9448680551801,11.3911463684452,7.44615544093405,7.72479436862367,33.6854382570574,42.2550051552482,16.8421023316498,7.12801714369232,4.69807165629258,50.0588749065915,74.0176686070726,17.6752919651769,16.2654075833553,27.7064115484183,13.1693286264251,17.4698043605441,7.51190294532984,56.9429559463306,71.9352439112336,16.6574763278483,19.7096668078393,53.4162151030236,13.1907237425202,47.921140448487,35.3622027030021,81.6877448047729,24.3592512902997,30.5444866835379,11.7823870262143,11.153577920498,77.7471007611385,27.8075791108287,47.307405254626,190.941722925337,187.922077087085,186.709791598242,1.95157929807353,1.45782745153634,4.18298194330266,7.25627385107593,5.80337957013945,1.09493207722749,79.7892614882061,93.2699360379684,198.914286747572,22.754028473567,17.3251075600701,38.4497100129493,41.8090031393692,41.2128861100754,38.4925964836055,41.1792149334648,43.4205232973307,34.5168148890021,35.1236422574369,46.5544059905132,46.5037936413528,133.229685113274,107.420816957495,79.3847041481927,0,0,1.18157981336281,0,13.03677448557,122.15628093255,267.022444399186,340.577312370587,157.528899769026,212.120127858191,16.6162235708266,13.5191522086345,122.681640721482,63.413931521367,69.3885382933706,38.5458415522067,47.2245222828143,28.5381228351897,16.5942923571448,11.1603201072333,1.72351904261178,27.1444947561516,15.4576408780277,87.1724656077026,244.413996529341,121.926583628452,273.24305276639,220.881793270611,313.607031557143,0,1.05658120815871,23.2207489405665,24.3562721274665,34.9691540591072,7.68324520935245,58.4442291104165,30.4765362746122,54.7431827272657,36.9150698804931,63.3723852050666,15.4346273620512,41.4885012077835,6.5394010324992,37.4758640545055,43.3060247788556,21.4593867511129,40.574532122688,43.081974886749,52.003718455683,46.8117421157099,79.4355139330358,108.700249038569,27.7377307696806,18.9917561887005,27.1669311137654,43.6486486953605,36.9607626692248,16.630989331602,259.237864271244,175.178225178659,209.443416526409,2.43247561282381,1.00451418286425,12.6500363689819,147.129661271832,45.9447743336456,81.3030358732095,47.3434872802984,104.587448178145,73.773116854837,0.224170287987055,0.197030760201927,0.215627574859517,0.256686072559497,19.8193806893521,18.219579540067,6.95959931499926,24.7924072694836,6.37938751653163,0,0,0,10.9195427630035,27.5093786582822,22.2437319433783,61.9753167361805,67.8030157429215,40.6872230787551,65.7163338109121,27.0851489754947,25.0148254461583,18.6251528326509,31.882828729701,42.9580162702168,20.0701149421271,82.0406849768883,20.2454620048405,0.620304078368662,0.215714200818617,0.426910231213777,12.1251028578504,38.2801510874143,19.9577593597589,5.21026396419431,16.4204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| |||
|short_description=p1@ITGA3 | |||
}} |
Latest revision as of 22:21, 15 September 2015
Short description: | p1@ITGA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ITGA3_5end |
Coexpression cluster: | C2418_Renal_Urothelial_salivary_Corneal_Bronchial_Mammary_Keratinocyte |
Association with transcript: | 0bp_to_ENST00000320031_5end |
EntrezGene: | ITGA3 |
HGNC: | 6139 |
UniProt: | P26006 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.93e-45 | 253 |
embryonic cell | 1.74e-31 | 250 |
endo-epithelial cell | 1.06e-14 | 42 |
mesodermal cell | 1.34e-13 | 121 |
squamous epithelial cell | 2.05e-13 | 63 |
endodermal cell | 1.48e-11 | 58 |
kidney cell | 8.00e-10 | 17 |
kidney epithelial cell | 8.00e-10 | 17 |
epithelial cell of nephron | 4.46e-09 | 15 |
mesothelial cell | 8.75e-09 | 19 |
respiratory epithelial cell | 3.44e-08 | 13 |
kidney tubule cell | 7.80e-08 | 10 |
nephron tubule epithelial cell | 7.80e-08 | 10 |
ecto-epithelial cell | 1.36e-07 | 34 |
kidney cortical cell | 2.85e-07 | 12 |
renal cortical epithelial cell | 2.85e-07 | 12 |
columnar/cuboidal epithelial cell | 6.34e-07 | 27 |
lining cell | 8.78e-07 | 58 |
barrier cell | 8.78e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
reproductive organ cancer | 2.15e-08 | 29 |
carcinoma | 2.25e-08 | 106 |
female reproductive organ cancer | 2.74e-08 | 27 |