FFCP PHASE1:Hg19::chrM:3299..3324,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrM:3299..3324,+
|short_description=p2@TPT1
|description=CAGE_peak_2_at_TPT1_5end
|association_with_transcript=0bp_to_AK074482,BC007842,BC017294,BC061915_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7178 | |EntrezGene=7178 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12022 | |HGNC=12022 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_AK074482,BC007842,BC017294,BC061915_5end | |||
|cluster_id=chrM:3299..3324,+ | |||
|coexpression_cluster_id=C180 | |||
|description=CAGE_peak_2_at_TPT1_5end | |||
|id=chrM:3299..3324,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.82e-08;82 | |||
|ontology_enrichment_disease=DOID:14566!1.93e-20!239;DOID:162!1.71e-19!235;DOID:0050687!1.99e-11!143;DOID:0050686!3.86e-11!137;DOID:305!1.04e-09!106;DOID:2531!3.60e-07!51;DOID:0060083!3.60e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.93e-20,239;DOID:162,1.71e-19,235;DOID:0050687,1.99e-11,143;DOID:0050686,3.86e-11,137;DOID:305,1.04e-09,106;DOID:2531,3.60e-07,51;DOID:0060083,3.60e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.27e-13!115;UBERON:0001049!2.67e-13!57;UBERON:0005068!2.67e-13!57;UBERON:0006241!2.67e-13!57;UBERON:0007135!2.67e-13!57;UBERON:0000073!7.48e-13!94;UBERON:0001016!7.48e-13!94;UBERON:0001017!2.10e-12!82;UBERON:0005743!4.99e-12!86;UBERON:0002780!1.59e-11!41;UBERON:0001890!1.59e-11!41;UBERON:0006240!1.59e-11!41;UBERON:0000955!5.20e-11!69;UBERON:0006238!5.20e-11!69;UBERON:0003080!6.75e-11!42;UBERON:0002616!3.42e-10!59;UBERON:0002020!3.80e-10!34;UBERON:0003528!3.80e-10!34;UBERON:0001893!1.15e-09!34;UBERON:0002791!2.60e-09!33;UBERON:0001869!3.16e-09!32;UBERON:0003075!9.41e-09!86;UBERON:0007284!9.41e-09!86;UBERON:0002346!1.18e-08!90;UBERON:0002619!5.37e-08!22;UBERON:0001950!6.41e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;6.51e-09;34!UBERON:0002020;6.51e-09;34!UBERON:0001893;1.50e-08;34!UBERON:0000073;1.74e-08;53!UBERON:0002616;1.74e-08;53!UBERON:0002780;2.78e-08;41!UBERON:0001890;2.78e-08;41!UBERON:0001869;3.74e-08;32!UBERON:0002791;4.25e-08;32!UBERON:0002619;5.33e-08;22!UBERON:0001950;6.37e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.83e-14,56;UBERON:0005068,6.83e-14,56;UBERON:0006241,6.83e-14,56;UBERON:0007135,6.83e-14,56;UBERON:0001016,1.21e-13,89;UBERON:0000073,1.42e-13,53;UBERON:0002616,1.42e-13,53;UBERON:0007023,3.21e-13,114;UBERON:0001017,7.59e-13,81;UBERON:0002780,1.59e-11,41;UBERON:0001890,1.59e-11,41;UBERON:0003080,1.59e-11,41;UBERON:0006240,1.59e-11,41;UBERON:0000955,1.84e-11,68;UBERON:0006238,1.84e-11,68;UBERON:0003528,3.80e-10,34;UBERON:0002020,3.80e-10,34;UBERON:0001893,1.15e-09,34;UBERON:0003075,1.50e-09,82;UBERON:0007284,1.50e-09,82;UBERON:0002346,2.04e-09,86;UBERON:0001869,3.16e-09,32;UBERON:0002791,3.79e-09,32;UBERON:0010371,4.63e-08,104;UBERON:0002619,5.37e-08,22;UBERON:0004121,3.09e-07,171;UBERON:0000924,3.09e-07,171;UBERON:0006601,3.09e-07,171;UBERON:0001950,6.41e-07,20;UBERON:0003056,7.36e-07,61;UBERON:0011216,8.25e-07,223 | |||
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| ||
|short_description=p2@TPT1 | |||
}} | }} |
Latest revision as of 15:46, 18 September 2015
Short description: | p2@TPT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TPT1_5end |
Coexpression cluster: | C180_skeletal_heart_Hepatocyte_acute_occipital_hippocampus_middle |
Association with transcript: | 0bp_to_AK074482, BC007842, BC017294, BC061915_5end |
EntrezGene: | TPT1 |
HGNC: | 12022 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 6.83e-14 | 56 |
neural rod | 6.83e-14 | 56 |
future spinal cord | 6.83e-14 | 56 |
neural keel | 6.83e-14 | 56 |
nervous system | 1.21e-13 | 89 |
regional part of nervous system | 1.42e-13 | 53 |
regional part of brain | 1.42e-13 | 53 |
adult organism | 3.21e-13 | 114 |
central nervous system | 7.59e-13 | 81 |
regional part of forebrain | 1.59e-11 | 41 |
forebrain | 1.59e-11 | 41 |
anterior neural tube | 1.59e-11 | 41 |
future forebrain | 1.59e-11 | 41 |
brain | 1.84e-11 | 68 |
future brain | 1.84e-11 | 68 |
brain grey matter | 3.80e-10 | 34 |
gray matter | 3.80e-10 | 34 |
telencephalon | 1.15e-09 | 34 |
neural plate | 1.50e-09 | 82 |
presumptive neural plate | 1.50e-09 | 82 |
neurectoderm | 2.04e-09 | 86 |
cerebral hemisphere | 3.16e-09 | 32 |
regional part of telencephalon | 3.79e-09 | 32 |
ecto-epithelium | 4.63e-08 | 104 |
regional part of cerebral cortex | 5.37e-08 | 22 |
ectoderm-derived structure | 3.09e-07 | 171 |
ectoderm | 3.09e-07 | 171 |
presumptive ectoderm | 3.09e-07 | 171 |
neocortex | 6.41e-07 | 20 |
pre-chordal neural plate | 7.36e-07 | 61 |
organ system subdivision | 8.25e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.93e-20 | 239 |
cancer | 1.71e-19 | 235 |
cell type cancer | 1.99e-11 | 143 |
organ system cancer | 3.86e-11 | 137 |
carcinoma | 1.04e-09 | 106 |
hematologic cancer | 3.60e-07 | 51 |
immune system cancer | 3.60e-07 | 51 |