FFCP PHASE1:Hg19::chr4:77356989..77357005,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57619 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-259bp_to_ENST00000497440_5end | |||
|cluster_id=chr4:77356989..77357005,+ | |||
|coexpression_cluster_id=C1944 | |||
|description=CAGE_peak_12_at_SHROOM3_5end | |||
|id=chr4:77356989..77357005,+ | |||
|ontology_enrichment_celltype=CL:0000128!1.08e-11!7;CL:0000126!1.08e-11!7;CL:0000127!1.08e-11!7;CL:0002453!1.08e-11!7;CL:0002322!1.78e-09!5;CL:0000064!5.84e-08!3;CL:0005012!5.84e-08!3;CL:0000067!5.84e-08!3;CL:0002304!5.84e-08!3;CL:0002605!6.81e-08!3;CL:0000133!1.16e-07!59;CL:0002319!1.95e-07!25;CL:0002586!3.44e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000128;5.64e-31;7!CL:0000126;5.64e-31;7!CL:0000127;5.64e-31;7!CL:0000064;1.67e-27;3!CL:0000067;1.67e-27;3!CL:0005012;1.67e-27;3!CL:0002304;1.67e-27;3!CL:0002605;3.55e-27;3!CL:0002319;4.31e-15;25!CL:0000243;1.02e-12;15!CL:0000125;1.02e-12;15!CL:0000095;2.30e-11;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,3.65e-31,7;CL:0000126,3.65e-31,7;CL:0000127,3.65e-31,7;CL:0002453,3.65e-31,7;CL:0000064,1.75e-27,3;CL:0000067,1.75e-27,3;CL:0005012,1.75e-27,3;CL:0002304,1.75e-27,3;CL:0002605,3.26e-27,3;CL:0002319,3.82e-15,25;CL:0000133,6.95e-13,59;CL:0000243,8.59e-13,15;CL:0000125,8.59e-13,15;CL:0000030,8.59e-13,15;CL:0000339,8.59e-13,15;CL:0000095,1.97e-11,17;CL:0000123,1.97e-11,17;CL:0000221,2.38e-10,72 | |||
|ontology_enrichment_development_v019=CL:0000339;1.02e-12;15!CL:0000133;1.53e-08;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!6.78e-55!86;UBERON:0007284!6.78e-55!86;UBERON:0002346!8.03e-54!90;UBERON:0005743!2.52e-53!86;UBERON:0001017!5.83e-47!82;UBERON:0000073!7.29e-47!94;UBERON:0001016!7.29e-47!94;UBERON:0001049!3.65e-45!57;UBERON:0005068!3.65e-45!57;UBERON:0006241!3.65e-45!57;UBERON:0007135!3.65e-45!57;UBERON:0000955!8.37e-39!69;UBERON:0006238!8.37e-39!69;UBERON:0003056!2.91e-38!61;UBERON:0002616!4.07e-38!59;UBERON:0000033!3.84e-33!123;UBERON:0000924!5.19e-32!173;UBERON:0006601!5.19e-32!173;UBERON:0004121!5.97e-32!169;UBERON:0000153!6.72e-31!129;UBERON:0007811!6.72e-31!129;UBERON:0002780!2.14e-30!41;UBERON:0001890!2.14e-30!41;UBERON:0006240!2.14e-30!41;UBERON:0003080!1.74e-29!42;UBERON:0001893!2.46e-27!34;UBERON:0002020!4.71e-27!34;UBERON:0003528!4.71e-27!34;UBERON:0002791!8.87e-26!33;UBERON:0001869!1.72e-24!32;UBERON:0000956!4.10e-19!25;UBERON:0000203!4.10e-19!25;UBERON:0007023!3.81e-17!115;UBERON:0003076!6.96e-17!15;UBERON:0003057!6.96e-17!15;UBERON:0007625!2.27e-15!11;UBERON:0002619!3.86e-14!22;UBERON:0000025!1.94e-13!194;UBERON:0001950!2.26e-13!20;UBERON:0004733!5.54e-12!12;UBERON:0002028!5.54e-12!12;UBERON:0007277!5.54e-12!12;UBERON:0000483!7.55e-12!309;UBERON:0000119!1.42e-11!312;UBERON:0002298!4.50e-11!8;UBERON:0000064!4.65e-11!219;UBERON:0004732!6.51e-11!13;UBERON:0000019!7.35e-10!19;UBERON:0000047!7.35e-10!19;UBERON:0004088!7.35e-10!19;UBERON:0003072!7.35e-10!19;UBERON:0003071!7.35e-10!19;UBERON:0004128!7.35e-10!19;UBERON:0000488!7.39e-10!4;UBERON:0002308!1.92e-09!9;UBERON:0000125!1.92e-09!9;UBERON:0000970!3.02e-09!20;UBERON:0004111!7.44e-09!241;UBERON:0002104!1.08e-08!21;UBERON:0001456!1.08e-08!21;UBERON:0000477!1.09e-08!286;UBERON:0000200!4.30e-08!6;UBERON:0000475!5.10e-08!365;UBERON:0001778!5.84e-08!3;UBERON:0001775!5.84e-08!3;UBERON:0000020!9.91e-08!23;UBERON:0002420!1.80e-07!9;UBERON:0007245!1.80e-07!9;UBERON:0010009!1.80e-07!9;UBERON:0010011!1.80e-07!9;UBERON:0000454!1.80e-07!9;UBERON:0002680!2.36e-07!9;UBERON:0001895!2.36e-07!9;UBERON:0010092!2.36e-07!9;UBERON:0001032!2.60e-07!24;UBERON:0004456!2.60e-07!24;UBERON:0001781!3.44e-07!3;UBERON:0001782!3.44e-07!3;UBERON:0005424!3.44e-07!3;UBERON:0000966!3.92e-07!5;UBERON:0005388!3.92e-07!5;UBERON:0001802!3.92e-07!5;UBERON:0002240!6.48e-07!3;UBERON:0001896!7.32e-07!3;UBERON:0005290!7.32e-07!3;UBERON:0010096!7.32e-07!3;UBERON:0009663!7.72e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;1.67e-27;3!UBERON:0001775;1.67e-27;3!UBERON:0000488;8.54e-21;4!UBERON:0007625;4.08e-20;11!UBERON:0002203;4.61e-14;6!UBERON:0001768;4.61e-14;6!UBERON:0002200;4.61e-14;6!UBERON:0000019;1.35e-11;19!UBERON:0000047;1.35e-11;19!UBERON:0004088;1.35e-11;19!UBERON:0010230;1.35e-11;19!UBERON:0000956;1.36e-11;25!UBERON:0000203;1.36e-11;25!UBERON:0000970;5.22e-11;20!UBERON:0001801;1.66e-10;14!UBERON:0002104;1.78e-10;21!UBERON:0001456;1.78e-10;21!UBERON:0000020;1.50e-09;23!UBERON:0001032;3.82e-09;24!UBERON:0004456;3.82e-09;24!UBERON:0002791;4.00e-09;32!UBERON:0001869;4.00e-09;32!UBERON:0003528;2.55e-08;34!UBERON:0002020;2.55e-08;34!UBERON:0006876;6.75e-08;11!UBERON:0001893;4.64e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.75e-27,3;UBERON:0001775,1.75e-27,3;UBERON:0000488,8.84e-21,4;UBERON:0007625,3.63e-20,11;UBERON:0003056,2.67e-15,61;UBERON:0002203,4.72e-14,6;UBERON:0001768,4.72e-14,6;UBERON:0002200,4.72e-14,6;UBERON:0003075,3.62e-13,82;UBERON:0007284,3.62e-13,82;UBERON:0002346,1.80e-12,86;UBERON:0000956,1.54e-11,25;UBERON:0000203,1.54e-11,25;UBERON:0000019,4.91e-11,20;UBERON:0000047,4.91e-11,20;UBERON:0010312,4.91e-11,20;UBERON:0004088,4.91e-11,20;UBERON:0010230,4.91e-11,20;UBERON:0003072,4.91e-11,20;UBERON:0004128,4.91e-11,20;UBERON:0003071,4.91e-11,20;UBERON:0001017,7.92e-11,81;UBERON:0000970,1.68e-10,21;UBERON:0002104,1.68e-10,21;UBERON:0001801,1.68e-10,14;UBERON:0004121,4.33e-10,171;UBERON:0000924,4.33e-10,171;UBERON:0006601,4.33e-10,171;UBERON:0001456,5.12e-10,22;UBERON:0010371,5.45e-10,104;UBERON:0001016,1.35e-09,89;UBERON:0000020,3.63e-09,24;UBERON:0001032,3.63e-09,24;UBERON:0004456,3.63e-09,24;UBERON:0002791,5.39e-09,32;UBERON:0001869,5.39e-09,32;UBERON:0010314,6.95e-09,132;UBERON:0000955,1.03e-08,68;UBERON:0006238,1.03e-08,68;UBERON:0003528,1.87e-08,34;UBERON:0002020,1.87e-08,34;UBERON:0001893,1.87e-08,34;UBERON:0006876,6.83e-08,11;UBERON:0000073,4.16e-07,53;UBERON:0002616,4.16e-07,53;UBERON:0005085,4.73e-07,31;UBERON:0002780,5.76e-07,41;UBERON:0001890,5.76e-07,41;UBERON:0003080,5.76e-07,41;UBERON:0006240,5.76e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.861847406537515,0,1.88072832886853,3.43483184557268,2.87436292653057,2.76193807108566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0,0,0,0,0,5.0103453096956,3.54767035940102,2.28370442802128,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.464775771478074,0.621966330092223,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857839051492628,0,0,0,0,0,0,0,4.75314660397815,0.587043471179108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81141936333695,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0.315404830067869,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,1.79515087581472,0.984043937099117,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57768678274367,0,0,0,0,0,0,0.844016498463076,0,0,2.11125408127993,0.19924798825107,0,0,1.43176155503017,0,0,0,0,0,0,0,0,1.93866549219044,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.723578631752448,0,0.331737779793674,0,0,0.10893846351899,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,3.67860687561555,0,0,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0.51595809741485,0,0,0,0,0,0,0,0,0.379864775735272,0,0.0801588202515337,0,0,0,1.37443915399099,0,0,0,0,0,0.209205692624666,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0.393709926058995,0.0846733320657845,0,1.36203406111576,0.160753148465019,1.10031549277787,0,0,0,0.303747783290123,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.250381861413,0.573409195690071,0.221858103073705,0.993542447062135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0.345430341731199,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.449604575675217,0,0.319267718114302,0,1.26035848110859,0.207471757392654,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0.472763092328763,0,1.03343398250592,0.507326481551255,0,0,0,0,0,0,0,0.606965604236632,0.455324382702595,0,0,0,0.271878931907327,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0.500335809236594,0,0,0.347716544605159,0,0,0,0,0,0,0,0,0,0,0,0,0.490751168076215,0.243835849964539,0,0,0,0,0,0,0,1.1294608203896,0,0,0,0,0,0,0,0.588925401344836,0.297046400327086,0.8453114551668,0,0,0,0,0,0,0,0,0,0.430018749454354,0,0.611923411718232,0,0,0,0,0,3.15416062087697,1.09265571963696,0,0.61193297845189,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p12@SHROOM3 | |||
}} |
Latest revision as of 18:00, 18 September 2015
Short description: | p12@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_SHROOM3_5end |
Coexpression cluster: | C1944_Astrocyte_Ciliary_Lens_colon_teratocarcinoma_gastric_Neural |
Association with transcript: | -259bp_to_ENST00000497440_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 3.65e-31 | 7 |
macroglial cell | 3.65e-31 | 7 |
astrocyte | 3.65e-31 | 7 |
oligodendrocyte precursor cell | 3.65e-31 | 7 |
ciliated cell | 1.75e-27 | 3 |
ciliated epithelial cell | 1.75e-27 | 3 |
multi-ciliated epithelial cell | 1.75e-27 | 3 |
non-pigmented ciliary epithelial cell | 1.75e-27 | 3 |
astrocyte of the cerebral cortex | 3.26e-27 | 3 |
neural cell | 3.82e-15 | 25 |
neurectodermal cell | 6.95e-13 | 59 |
glial cell (sensu Vertebrata) | 8.59e-13 | 15 |
glial cell | 8.59e-13 | 15 |
glioblast | 8.59e-13 | 15 |
glioblast (sensu Vertebrata) | 8.59e-13 | 15 |
neuron associated cell | 1.97e-11 | 17 |
neuron associated cell (sensu Vertebrata) | 1.97e-11 | 17 |
ectodermal cell | 2.38e-10 | 72 |