FFCP PHASE1:Mm9::chr19:5107027..5107038,-: Difference between revisions
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{{FFCP|EntrezGene=76308|HGNC=|MCL_coexpression_id=1511|UniProt=Q9D1G1|association_with_transcript=-8bp_to_ENSMUST00000025804_5end|description=CAGE_peak_2_at_Rab1b_5end|id=chr19:5107027..5107038,-|ontology_enrichment_celltype=CL:0000221!4.26e-15!44;CL:0000133!4.26e-15!44;CL:0002319!9.44e-15!43;CL:0000055!4.89e-13!50;CL:0000117!1.45e-11!23;CL:0000337!1.45e-11!23;CL:0000540!7.79e-10!33;CL:0000047!7.79e-10!33;CL:0000031!7.79e-10!33;CL:0000404!7.79e-10!33;CL:0000393!2.67e-09!39;CL:0000211!2.67e-09!39|ontology_enrichment_celltype_v019_2=CL:0000221,2.39e-15,44;CL:0000133,2.39e-15,44;CL:0002319,5.35e-15,43;CL:0000117,7.04e-12,23;CL:0000337,7.04e-12,23;CL:0000540,5.12e-10,33;CL:0000047,5.12e-10,33;CL:0000031,5.12e-10,33;CL:0000404,5.12e-10,33;CL:0000393,1.82e-09,39;CL:0000211,1.82e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.49e-18!75;UBERON:0001016!1.49e-18!75;UBERON:0001017!7.50e-18!73;UBERON:0005743!7.50e-18!73;UBERON:0004121!9.26e-16!102;UBERON:0000924!9.26e-16!102;UBERON:0006601!9.26e-16!102;UBERON:0001049!1.69e-14!52;UBERON:0005068!1.69e-14!52;UBERON:0006241!1.69e-14!52;UBERON:0007135!1.69e-14!52;UBERON:0002346!5.19e-14!71;UBERON:0003075!5.19e-14!71;UBERON:0007284!5.19e-14!71;UBERON:0000033!5.43e-12!63;UBERON:0000955!8.24e-12!50;UBERON:0006238!8.24e-12!50;UBERON:0002616!1.64e-11!49;UBERON:0002020!1.70e-10!34;UBERON:0003056!5.72e-10!49;UBERON:0002780!9.13e-10!39;UBERON:0001890!9.13e-10!39;UBERON:0006240!9.13e-10!39;UBERON:0003080!1.07e-09!40;UBERON:0002791!2.38e-08!29;UBERON:0003528!2.38e-08!29;UBERON:0001893!2.38e-08!29|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.03e-18,75;UBERON:0001017,5.29e-18,73;UBERON:0004121,1.01e-15,95;UBERON:0000924,1.01e-15,95;UBERON:0006601,1.01e-15,95;UBERON:0010314,1.50e-14,92;UBERON:0001049,1.61e-14,52;UBERON:0005068,1.61e-14,52;UBERON:0006241,1.61e-14,52;UBERON:0007135,1.61e-14,52;UBERON:0002346,2.76e-14,64;UBERON:0003075,2.76e-14,64;UBERON:0007284,2.76e-14,64;UBERON:0000073,6.86e-14,54;UBERON:0010371,2.95e-12,73;UBERON:0000955,5.22e-12,47;UBERON:0006238,5.22e-12,47;UBERON:0002616,1.05e-11,46;UBERON:0002020,1.80e-10,34;UBERON:0003056,5.82e-10,49;UBERON:0002780,9.54e-10,39;UBERON:0001890,9.54e-10,39;UBERON:0006240,9.54e-10,39;UBERON:0003080,1.11e-09,40;UBERON:0003528,2.60e-08,29;UBERON:0002791,2.60e-08,29;UBERON:0001893,2.60e-08,29|phase1_expression=3.04282809499109,0.697950815278722,2.72999543633722,1.20985684522732,0.500895729946347,0.839396359559449,0.934450562382103,1.16210991097419,0.140788722151667,0.234064526321993,0.68487187290202,0.8774937489487,0.684802919724823,1.66098764596095,0.333109761815663,1.01237633694913,1.39912375625629,2.36596624018678,0.959801035240171,0.42438965179803,3.82694805679814,1.48936426801328,1.04479915655574,0.799962113967033,0.68822784320151,0,0,1.72376986148711,0.760093677825496,0.252030129759931,0.443461021310609,4.44521471421742,3.69038872550742,0,1.1554064790051,1.16364251750945,0,1.25559489221072,2.3440060335714,0.523523743973798,2.35292595212406,4.09827290975067,2.42755176515577,1.38486499773135,1.62203089951223,2.0190142737785,4.69434806608824,6.1047043786525,5.05278220289285,4.27745777963423,2.93971485413261,5.75010257459886,1.34226084846189,0,0.336093799142464,1.02903774414379,2.57880095944881,2.57836046138721,5.05791152148994,7.40587370980846,8.23980824558033,6.43804610931351,8.00365316500025,4.04954872776629,0.988866362566974,4.2628806896766,3.29560121570245,8.06858441175265,5.80661828927475,4.86021377994086,3.57552434297349,3.99911378165325,4.19650227808066,4.77714116938321,5.94241920313065,9.19218786610021,0,4.08599481872601,2.4577045320999,4.74790635828698,4.57438218012048,3.64639359389732,7.2587579740359,6.19038871034848,3.36156145108982,2.65165726926301,3.13217697758026,3.72798891650601,2.42323818666189,3.02286240427142,0,0,2.03991400112325,1.07940638327563,0,0.448026887097336,2.10666630197628,4.09032774187339,2.07828803682295,4.59341446863442,2.67602497575693,0,0,0,0.865964164044856,0.760079596425296,1.01104889002957,1.37020655662872,1.03575153458869,2.22663208597237,2.25530924795977,2.13125834818499,1.15307748628029,1.50722640552623,1.88141931417128,1.63366568728578,1.48316980640624,0.578397427679647,1.76922110389975,1.29413479957927,1.98757366614354,0.484875253135222,1.86391761218122,1.75668478206928,3.77004072264219,1.02182822083437,1.43778149407104,1.79970819298022,0.889491589511453,1.79748767285787,2.28750301409313,3.5183218591602,0.869121600961382,3.3243009452943,2.49345653471472,1.62241263067758,1.62942982160506,0.870848794270651,0.252722758433675,1.05220927943237,1.95180664444056,2.5289231487682,3.24111833649629,1.9591626318643,2.10913147369116,2.43416068541215,2.06143794031403,1.29351685369508,3.66465587985832,1.32374256117473,2.46331573829528,1.97276159184817,1.66828349535359,1.0447564995665,1.23469281844766,1.19420560091096,1.40442637462647,1.02939162845886,1.70498099637356,2.07125772535502,1.17263029990548,1.44049649168812,2.13070262026689,1.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=76308 | |||
|HGNC= | |||
|MCL_coexpression_id=1511 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D1G1 | |||
|association_with_transcript=-8bp_to_ENSMUST00000025804_5end | |||
|cluster_id=chr19:5107027..5107038,- | |||
|description=CAGE_peak_2_at_Rab1b_5end | |||
|id=chr19:5107027..5107038,- | |||
|ontology_enrichment_celltype=CL:0000221!4.26e-15!44;CL:0000133!4.26e-15!44;CL:0002319!9.44e-15!43;CL:0000055!4.89e-13!50;CL:0000117!1.45e-11!23;CL:0000337!1.45e-11!23;CL:0000540!7.79e-10!33;CL:0000047!7.79e-10!33;CL:0000031!7.79e-10!33;CL:0000404!7.79e-10!33;CL:0000393!2.67e-09!39;CL:0000211!2.67e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.39e-15,44;CL:0000133,2.39e-15,44;CL:0002319,5.35e-15,43;CL:0000117,7.04e-12,23;CL:0000337,7.04e-12,23;CL:0000540,5.12e-10,33;CL:0000047,5.12e-10,33;CL:0000031,5.12e-10,33;CL:0000404,5.12e-10,33;CL:0000393,1.82e-09,39;CL:0000211,1.82e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.49e-18!75;UBERON:0001016!1.49e-18!75;UBERON:0001017!7.50e-18!73;UBERON:0005743!7.50e-18!73;UBERON:0004121!9.26e-16!102;UBERON:0000924!9.26e-16!102;UBERON:0006601!9.26e-16!102;UBERON:0001049!1.69e-14!52;UBERON:0005068!1.69e-14!52;UBERON:0006241!1.69e-14!52;UBERON:0007135!1.69e-14!52;UBERON:0002346!5.19e-14!71;UBERON:0003075!5.19e-14!71;UBERON:0007284!5.19e-14!71;UBERON:0000033!5.43e-12!63;UBERON:0000955!8.24e-12!50;UBERON:0006238!8.24e-12!50;UBERON:0002616!1.64e-11!49;UBERON:0002020!1.70e-10!34;UBERON:0003056!5.72e-10!49;UBERON:0002780!9.13e-10!39;UBERON:0001890!9.13e-10!39;UBERON:0006240!9.13e-10!39;UBERON:0003080!1.07e-09!40;UBERON:0002791!2.38e-08!29;UBERON:0003528!2.38e-08!29;UBERON:0001893!2.38e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.03e-18,75;UBERON:0001017,5.29e-18,73;UBERON:0004121,1.01e-15,95;UBERON:0000924,1.01e-15,95;UBERON:0006601,1.01e-15,95;UBERON:0010314,1.50e-14,92;UBERON:0001049,1.61e-14,52;UBERON:0005068,1.61e-14,52;UBERON:0006241,1.61e-14,52;UBERON:0007135,1.61e-14,52;UBERON:0002346,2.76e-14,64;UBERON:0003075,2.76e-14,64;UBERON:0007284,2.76e-14,64;UBERON:0000073,6.86e-14,54;UBERON:0010371,2.95e-12,73;UBERON:0000955,5.22e-12,47;UBERON:0006238,5.22e-12,47;UBERON:0002616,1.05e-11,46;UBERON:0002020,1.80e-10,34;UBERON:0003056,5.82e-10,49;UBERON:0002780,9.54e-10,39;UBERON:0001890,9.54e-10,39;UBERON:0006240,9.54e-10,39;UBERON:0003080,1.11e-09,40;UBERON:0003528,2.60e-08,29;UBERON:0002791,2.60e-08,29;UBERON:0001893,2.60e-08,29 | |||
|phase1_expression=3.04282809499109,0.697950815278722,2.72999543633722,1.20985684522732,0.500895729946347,0.839396359559449,0.934450562382103,1.16210991097419,0.140788722151667,0.234064526321993,0.68487187290202,0.8774937489487,0.684802919724823,1.66098764596095,0.333109761815663,1.01237633694913,1.39912375625629,2.36596624018678,0.959801035240171,0.42438965179803,3.82694805679814,1.48936426801328,1.04479915655574,0.799962113967033,0.68822784320151,0,0,1.72376986148711,0.760093677825496,0.252030129759931,0.443461021310609,4.44521471421742,3.69038872550742,0,1.1554064790051,1.16364251750945,0,1.25559489221072,2.3440060335714,0.523523743973798,2.35292595212406,4.09827290975067,2.42755176515577,1.38486499773135,1.62203089951223,2.0190142737785,4.69434806608824,6.1047043786525,5.05278220289285,4.27745777963423,2.93971485413261,5.75010257459886,1.34226084846189,0,0.336093799142464,1.02903774414379,2.57880095944881,2.57836046138721,5.05791152148994,7.40587370980846,8.23980824558033,6.43804610931351,8.00365316500025,4.04954872776629,0.988866362566974,4.2628806896766,3.29560121570245,8.06858441175265,5.80661828927475,4.86021377994086,3.57552434297349,3.99911378165325,4.19650227808066,4.77714116938321,5.94241920313065,9.19218786610021,0,4.08599481872601,2.4577045320999,4.74790635828698,4.57438218012048,3.64639359389732,7.2587579740359,6.19038871034848,3.36156145108982,2.65165726926301,3.13217697758026,3.72798891650601,2.42323818666189,3.02286240427142,0,0,2.03991400112325,1.07940638327563,0,0.448026887097336,2.10666630197628,4.09032774187339,2.07828803682295,4.59341446863442,2.67602497575693,0,0,0,0.865964164044856,0.760079596425296,1.01104889002957,1.37020655662872,1.03575153458869,2.22663208597237,2.25530924795977,2.13125834818499,1.15307748628029,1.50722640552623,1.88141931417128,1.63366568728578,1.48316980640624,0.578397427679647,1.76922110389975,1.29413479957927,1.98757366614354,0.484875253135222,1.86391761218122,1.75668478206928,3.77004072264219,1.02182822083437,1.43778149407104,1.79970819298022,0.889491589511453,1.79748767285787,2.28750301409313,3.5183218591602,0.869121600961382,3.3243009452943,2.49345653471472,1.62241263067758,1.62942982160506,0.870848794270651,0.252722758433675,1.05220927943237,1.95180664444056,2.5289231487682,3.24111833649629,1.9591626318643,2.10913147369116,2.43416068541215,2.06143794031403,1.29351685369508,3.66465587985832,1.32374256117473,2.46331573829528,1.97276159184817,1.66828349535359,1.0447564995665,1.23469281844766,1.19420560091096,1.40442637462647,1.02939162845886,1.70498099637356,2.07125772535502,1.17263029990548,1.44049649168812,2.13070262026689,1.37734962223183,1.85120535464854,1.62773761325285,2.14618721119695,1.98501082024188,2.96207729844265,2.29834449710733,1.29710095273369,2.63159977365598,1.3173006917463,1.47627060636409,2.3131894342054,2.26390147234426,0,0.264450566663544,2.34617075588757,0.464473343720877,2.06187938115349,0.80673409849337,1.33426826306922,1.33157938278791,0.949058123089023,1.81168850196412,1.50801125280162,1.39269530428806,0.58489226135736,1.79763881730844,0.648414149624083,0.796565093017469,3.41402221715547,1.37098215131675,1.1270773567308,2.03651327845314,1.93952487167626,2.80543279561274,1.07502113111237,1.62371162777562,1.8839847340965,1.1105744752962,0.592905254174298,1.33476084572875,0.982794975566015,0.899448449539415,1.01430060694251,1.4470629585145,1.01850340712568,1.43848068725405,1.94562272130042,0.823684239564244,0,0.744281895337007,0.936113019343682,1.01031551178845,1.25578189465339,0,2.21703828199926,3.41084541186873,2.77040459951444,1.69745085775188,2.34690248288502,2.84760637651087,1.90434912708811,2.14647012643579,0.945810864637146,1.99318220683897,2.55127629851979,1.80249646187312,2.59027472798843,1.44649058581512,1.50791283939272,1.08781136763742,0.491764273019036,1.65562047782839,2.56880943980467,2.46144541843627,1.63934945376675,2.7771801992481,1.26203287766503,1.95219372148319,1.72338718186239,3.34556317133573,2.00518806674155,1.41538265394416,2.42886421004937,1.46127928955656,0.790575555893047,2.57057053137446,1.13552068166615,3.20518086601059,2.44330439030364,1.31976098378028,1.32745138339963,1.69946445308487,1.51161778482376,1.50884063804718,0.295301892880773,0.922305443831782,1.29214146584111,1.09060118843252,1.06949213515416,0.632073515871632,1.05418608574999,1.03135543248187,2.38307724027652,1.98067203434441,3.36332577835162,3.42939256050548,2.12808280370728,1.78368817602071,2.13913726782757,2.13125464380219,0.938686832254841,0.847328283455281,0.882113592219848,0.98931751764888,1.45317984026315,1.02531972377865,1.19372344003136,1.64140899745061,1.1659233465194,4.63563255026274,1.19609616558497,2.27025554759545,1.29636169158798,0.753473828018764,0.410082683163076,0.686334519619568,1.86976272993241,1.39951452323658,1.52019971184866,2.86401185404534,2.21435195506795,2.03319467126849,1.72808545314882,0.418176592028937,1.31017538247707,1.48350781023303,1.40510874733071,2.6175594198403,0.777689839750757,0.621339313086926,12.964937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| |||
|short_description=p2@Rab1b | |||
}} |
Latest revision as of 22:39, 25 September 2015
Short description: | p2@Rab1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rab1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1511 |
Association with transcript: | -8bp_to_ENSMUST00000025804_5end |
EntrezGene: | Rab1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.39e-15 | 44 |
neurectodermal cell | 2.39e-15 | 44 |
neural cell | 5.35e-15 | 43 |
CNS neuron (sensu Vertebrata) | 7.04e-12 | 23 |
neuroblast (sensu Vertebrata) | 7.04e-12 | 23 |
neuron | 5.12e-10 | 33 |
neuronal stem cell | 5.12e-10 | 33 |
neuroblast | 5.12e-10 | 33 |
electrically signaling cell | 5.12e-10 | 33 |
electrically responsive cell | 1.82e-09 | 39 |
electrically active cell | 1.82e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.03e-18 | 75 |
central nervous system | 5.29e-18 | 73 |
ectoderm-derived structure | 1.01e-15 | 95 |
ectoderm | 1.01e-15 | 95 |
presumptive ectoderm | 1.01e-15 | 95 |
structure with developmental contribution from neural crest | 1.50e-14 | 92 |
neural tube | 1.61e-14 | 52 |
neural rod | 1.61e-14 | 52 |
future spinal cord | 1.61e-14 | 52 |
neural keel | 1.61e-14 | 52 |
neurectoderm | 2.76e-14 | 64 |
neural plate | 2.76e-14 | 64 |
presumptive neural plate | 2.76e-14 | 64 |
regional part of nervous system | 6.86e-14 | 54 |
ecto-epithelium | 2.95e-12 | 73 |
brain | 5.22e-12 | 47 |
future brain | 5.22e-12 | 47 |
regional part of brain | 1.05e-11 | 46 |
gray matter | 1.80e-10 | 34 |
pre-chordal neural plate | 5.82e-10 | 49 |
regional part of forebrain | 9.54e-10 | 39 |
forebrain | 9.54e-10 | 39 |
future forebrain | 9.54e-10 | 39 |
anterior neural tube | 1.11e-09 | 40 |
brain grey matter | 2.60e-08 | 29 |
regional part of telencephalon | 2.60e-08 | 29 |
telencephalon | 2.60e-08 | 29 |