FFCP PHASE1:Mm9::chr4:13670571..13670625,+: Difference between revisions
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{{FFCP|EntrezGene=12395|HGNC=|MCL_coexpression_id=22|UniProt=Q3UQX8|association_with_transcript=0bp_to_ENSMUST00000006761_5end|description=CAGE_peak_1_at_Runx1t1_5end|id=chr4:13670571..13670625,+|ontology_enrichment_celltype=CL:0000117!3.91e-11!23;CL:0000337!3.91e-11!23;CL:0000540!3.28e-08!33;CL:0000047!3.28e-08!33;CL:0000031!3.28e-08!33;CL:0000404!3.28e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,9.42e-12,23;CL:0000337,9.42e-12,23;CL:0000540,6.01e-08,33;CL:0000047,6.01e-08,33;CL:0000031,6.01e-08,33;CL:0000404,6.01e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.50e-13!52;UBERON:0005068!5.50e-13!52;UBERON:0006241!5.50e-13!52;UBERON:0007135!5.50e-13!52;UBERON:0003056!1.93e-12!49;UBERON:0002020!3.20e-12!34;UBERON:0000033!3.64e-12!63;UBERON:0001017!4.15e-12!73;UBERON:0005743!4.15e-12!73;UBERON:0000955!4.38e-12!50;UBERON:0006238!4.38e-12!50;UBERON:0002616!1.63e-11!49;UBERON:0003080!2.07e-11!40;UBERON:0000073!2.51e-11!75;UBERON:0001016!2.51e-11!75;UBERON:0002346!3.41e-11!71;UBERON:0003075!3.41e-11!71;UBERON:0007284!3.41e-11!71;UBERON:0000468!5.49e-11!333;UBERON:0002780!6.63e-11!39;UBERON:0001890!6.63e-11!39;UBERON:0006240!6.63e-11!39;UBERON:0002791!3.71e-10!29;UBERON:0003528!3.71e-10!29;UBERON:0001893!3.71e-10!29;UBERON:0004121!7.71e-10!102;UBERON:0000924!7.71e-10!102;UBERON:0006601!7.71e-10!102;UBERON:0000922!1.59e-08!328;UBERON:0000025!2.75e-08!114;UBERON:0004111!1.96e-07!122;UBERON:0000956!3.56e-07!21;UBERON:0001869!3.56e-07!21;UBERON:0000203!3.56e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.27e-14,54;UBERON:0001049,1.37e-13,52;UBERON:0005068,1.37e-13,52;UBERON:0006241,1.37e-13,52;UBERON:0007135,1.37e-13,52;UBERON:0002346,2.47e-13,64;UBERON:0003075,2.47e-13,64;UBERON:0007284,2.47e-13,64;UBERON:0002020,2.89e-13,34;UBERON:0003056,3.60e-13,49;UBERON:0003080,4.48e-12,40;UBERON:0001017,4.82e-12,73;UBERON:0000955,6.21e-12,47;UBERON:0006238,6.21e-12,47;UBERON:0010371,7.49e-12,73;UBERON:0002780,1.55e-11,39;UBERON:0001890,1.55e-11,39;UBERON:0006240,1.55e-11,39;UBERON:0002616,2.47e-11,46;UBERON:0003528,4.65e-11,29;UBERON:0002791,4.65e-11,29;UBERON:0001893,4.65e-11,29;UBERON:0001016,4.73e-11,75;UBERON:0004121,1.53e-10,95;UBERON:0000924,1.53e-10,95;UBERON:0006601,1.53e-10,95;UBERON:0010314,1.78e-10,92;UBERON:0000956,7.20e-08,21;UBERON:0001869,7.20e-08,21;UBERON:0000203,7.20e-08,21;UBERON:0000025,8.34e-08,114;UBERON:0004111,7.94e-07,122|phase1_expression=2.7225304007815,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0,0.257259436035947,3.43840127926508,2.06268836910977,32.168317276676,34.3844136526821,34.8607271928399,0,0,0.449949858640699,0,0,0,0.384218305321555,20.1157847878447,11.6105106965254,13.2504725651371,4.57041575046086,4.8591079009355,22.1708346579067,15.5269663049543,16.5459381589804,6.60695285996332,4.72443150915195,5.22262213071228,23.8714180791651,21.9570344645783,23.4411016750542,3.62937898701795,4.50210088025344,2.75036845998258,18.5616008848411,19.0778052270798,25.7231235238915,0.151452386666368,0.226714680320357,1.15945795480671,0.860423876981386,0,0,0,0,0.561777680527007,0.170430322578058,0,0,0.985903938436763,0,0,0,0,0,0,0.34255163915718,2.33044095282455,0.148442139064825,1.04091196059682,1.21786191324856,0.922461989024234,1.3565037649736,0.705532242814229,0.251333182659351,0.494389935468748,2.4581890676385,0,2.91180329905337,1.32504911076236,0.969750506270444,1.86391761218122,6.14839673724249,5.86450779077674,0.510914110417183,0,0,0,9.73639156131348,13.7250180845588,36.9423795211821,5.73620256634512,4.60287823194595,4.57133698031032,6.32740925964255,4.27725328171328,0.995255764880744,0.252722758433675,1.89397670297827,3.3831315170303,2.29902104433473,4.68161537493908,5.87748789559289,8.16437989815934,6.27757229395764,3.65436725782942,4.9153640440413,3.01795190105979,8.69887968771969,5.63043597324636,4.82230611340665,6.67313398141435,3.83077383174383,5.76189981942242,5.7719937377363,0,0,0,7.24940203874257,7.50483391939508,3.6012412292203,6.39210786080068,3.73852040320067,4.31947916084659,2.32533944750408,2.95100741539581,3.26942958628075,1.81015834904829,1.14917224855367,2.51313309592153,1.75439984910399,0.878200461164203,1.61047702512446,5.67782861123144,23.5651562348561,0,0.264450566663544,12.797295032114,12.0763069367428,6.57224052742676,4.23535401709019,4.66993892074228,3.23383564391351,2.37264530772256,0.658795818896044,1.75934646160189,3.18330355265841,2.14460495831032,1.79763881730844,1.51296634912286,1.1948476395262,0.379335801906163,1.5994791765362,0,0.610953983535943,0.775809948670503,0.98190147846446,0.632365371242573,0.147610147979602,0.784993639206874,0.246794327843601,0,2.16898637430922,1.17935397067922,0.224862112384854,0,0.241177159752417,0.50925170356284,1.15078454980324,0.162135226775035,0.274561413188081,1.43768206527355,0.372140947668503,0,0.2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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12395 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UQX8 | |||
|association_with_transcript=0bp_to_ENSMUST00000006761_5end | |||
|cluster_id=chr4:13670571..13670625,+ | |||
|description=CAGE_peak_1_at_Runx1t1_5end | |||
|id=chr4:13670571..13670625,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.91e-11!23;CL:0000337!3.91e-11!23;CL:0000540!3.28e-08!33;CL:0000047!3.28e-08!33;CL:0000031!3.28e-08!33;CL:0000404!3.28e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.42e-12,23;CL:0000337,9.42e-12,23;CL:0000540,6.01e-08,33;CL:0000047,6.01e-08,33;CL:0000031,6.01e-08,33;CL:0000404,6.01e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.50e-13!52;UBERON:0005068!5.50e-13!52;UBERON:0006241!5.50e-13!52;UBERON:0007135!5.50e-13!52;UBERON:0003056!1.93e-12!49;UBERON:0002020!3.20e-12!34;UBERON:0000033!3.64e-12!63;UBERON:0001017!4.15e-12!73;UBERON:0005743!4.15e-12!73;UBERON:0000955!4.38e-12!50;UBERON:0006238!4.38e-12!50;UBERON:0002616!1.63e-11!49;UBERON:0003080!2.07e-11!40;UBERON:0000073!2.51e-11!75;UBERON:0001016!2.51e-11!75;UBERON:0002346!3.41e-11!71;UBERON:0003075!3.41e-11!71;UBERON:0007284!3.41e-11!71;UBERON:0000468!5.49e-11!333;UBERON:0002780!6.63e-11!39;UBERON:0001890!6.63e-11!39;UBERON:0006240!6.63e-11!39;UBERON:0002791!3.71e-10!29;UBERON:0003528!3.71e-10!29;UBERON:0001893!3.71e-10!29;UBERON:0004121!7.71e-10!102;UBERON:0000924!7.71e-10!102;UBERON:0006601!7.71e-10!102;UBERON:0000922!1.59e-08!328;UBERON:0000025!2.75e-08!114;UBERON:0004111!1.96e-07!122;UBERON:0000956!3.56e-07!21;UBERON:0001869!3.56e-07!21;UBERON:0000203!3.56e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.27e-14,54;UBERON:0001049,1.37e-13,52;UBERON:0005068,1.37e-13,52;UBERON:0006241,1.37e-13,52;UBERON:0007135,1.37e-13,52;UBERON:0002346,2.47e-13,64;UBERON:0003075,2.47e-13,64;UBERON:0007284,2.47e-13,64;UBERON:0002020,2.89e-13,34;UBERON:0003056,3.60e-13,49;UBERON:0003080,4.48e-12,40;UBERON:0001017,4.82e-12,73;UBERON:0000955,6.21e-12,47;UBERON:0006238,6.21e-12,47;UBERON:0010371,7.49e-12,73;UBERON:0002780,1.55e-11,39;UBERON:0001890,1.55e-11,39;UBERON:0006240,1.55e-11,39;UBERON:0002616,2.47e-11,46;UBERON:0003528,4.65e-11,29;UBERON:0002791,4.65e-11,29;UBERON:0001893,4.65e-11,29;UBERON:0001016,4.73e-11,75;UBERON:0004121,1.53e-10,95;UBERON:0000924,1.53e-10,95;UBERON:0006601,1.53e-10,95;UBERON:0010314,1.78e-10,92;UBERON:0000956,7.20e-08,21;UBERON:0001869,7.20e-08,21;UBERON:0000203,7.20e-08,21;UBERON:0000025,8.34e-08,114;UBERON:0004111,7.94e-07,122 | |||
|phase1_expression=2.7225304007815,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0,0.257259436035947,3.43840127926508,2.06268836910977,32.168317276676,34.3844136526821,34.8607271928399,0,0,0.449949858640699,0,0,0,0.384218305321555,20.1157847878447,11.6105106965254,13.2504725651371,4.57041575046086,4.8591079009355,22.1708346579067,15.5269663049543,16.5459381589804,6.60695285996332,4.72443150915195,5.22262213071228,23.8714180791651,21.9570344645783,23.4411016750542,3.62937898701795,4.50210088025344,2.75036845998258,18.5616008848411,19.0778052270798,25.7231235238915,0.151452386666368,0.226714680320357,1.15945795480671,0.860423876981386,0,0,0,0,0.561777680527007,0.170430322578058,0,0,0.985903938436763,0,0,0,0,0,0,0.34255163915718,2.33044095282455,0.148442139064825,1.04091196059682,1.21786191324856,0.922461989024234,1.3565037649736,0.705532242814229,0.251333182659351,0.494389935468748,2.4581890676385,0,2.91180329905337,1.32504911076236,0.969750506270444,1.86391761218122,6.14839673724249,5.86450779077674,0.510914110417183,0,0,0,9.73639156131348,13.7250180845588,36.9423795211821,5.73620256634512,4.60287823194595,4.57133698031032,6.32740925964255,4.27725328171328,0.995255764880744,0.252722758433675,1.89397670297827,3.3831315170303,2.29902104433473,4.68161537493908,5.87748789559289,8.16437989815934,6.27757229395764,3.65436725782942,4.9153640440413,3.01795190105979,8.69887968771969,5.63043597324636,4.82230611340665,6.67313398141435,3.83077383174383,5.76189981942242,5.7719937377363,0,0,0,7.24940203874257,7.50483391939508,3.6012412292203,6.39210786080068,3.73852040320067,4.31947916084659,2.32533944750408,2.95100741539581,3.26942958628075,1.81015834904829,1.14917224855367,2.51313309592153,1.75439984910399,0.878200461164203,1.61047702512446,5.67782861123144,23.5651562348561,0,0.264450566663544,12.797295032114,12.0763069367428,6.57224052742676,4.23535401709019,4.66993892074228,3.23383564391351,2.37264530772256,0.658795818896044,1.75934646160189,3.18330355265841,2.14460495831032,1.79763881730844,1.51296634912286,1.1948476395262,0.379335801906163,1.5994791765362,0,0.610953983535943,0.775809948670503,0.98190147846446,0.632365371242573,0.147610147979602,0.784993639206874,0.246794327843601,0,2.16898637430922,1.17935397067922,0.224862112384854,0,0.241177159752417,0.50925170356284,1.15078454980324,0.162135226775035,0.274561413188081,1.43768206527355,0.372140947668503,0,0.252578877947112,0.538192240565737,0,3.8798169934987,7.95863929436036,9.12603868075345,9.33597971763535,8.91822943496308,6.03022526790537,5.71304738126433,2.92700471786698,11.1920952315396,9.08005227559977,7.97273843287435,3.93271955317771,4.83517949224508,2.31438493730419,0,0,0,0.275936746304732,4.33486592967038,3.5163505977661,0.819674726883377,1.00988370881749,0.315508219416257,0.390438744296638,1.07711698866399,1.19484398976276,1.55959071857676,4.52922449262132,0.809621403349789,1.75353514746787,2.76701444562566,19.2792789853084,2.41298144854057,2.67098405500883,3.90928702448583,5.93892442701128,0,5.09839335925461,3.02323556964751,2.64047111658257,2.65771703592696,3.68922177532713,3.35956781118687,5.08947221268508,2.49548164869305,1.58018378967908,1.05418608574999,0,11.234506989875,2.88097750450096,1.29358683782755,4.07240366560025,6.91626911204867,4.99432689285798,4.77192159746151,0.608929898229199,0.469343416127421,0.21183207086382,0.441056796109924,3.62749756471256,5.32832608096488,3.92034012033013,1.90995750405018,1.31312719796049,1.1659233465194,4.07935664423121,0,1.65109494370578,1.11116716421827,0.753473828018764,0.27338845544205,0,0,0,0.138199973804424,0,15.5004636854756,6.91286188231286,6.37231510848627,4.18176592028937,2.83871332870031,4.5853877770839,4.54594006489348,2.6175594198403,1.42576470620972,0,0,3.13984746692355,2.64733584731356,1.16670713006429,1.93739735216597,2.02747350588934,1.05621514781179,0.911430693907651,0.104859344425711,0.241584120826006,0.288030006257865,0,1.41907650703115,0.718976700153791,1.03936658382236,0.895133478337407,0.39736270956253,0.240390899039938,0.147689527174577,0.100966449948148,0.0762068066549998,0,0.0974578807397524,0,0,2.0405734525369,0,0.0897138566094757,0,5.60249822693352,1.68914227906064,2.74727436400898,1.07184189539533,0,6.7770221114048,5.9842280745933,9.16632821503035,6.35856774671644,6.85082519770642,7.55393897389701,10.8003600037089,7.20513925158753,8.60970577069989,5.1776031175182,5.50072942196136,9.17757208822371,11.7806187970353,10.4535888339366,7.96530017986333,8.27295788025063,8.44537565646138,8.03536723231687,8.66481865897901,5.55933865880354,8.36481689637791,7.1678009726709,6.27398100048212,8.00314405060866,7.69635284005218,7.1444053692461,7.41659686047075,8.10218725947561,7.00546031365621,6.32955356577908,9.25746981440622,5.14679837862079,6.43777712857767,9.01147783120437,8.37573485696442,7.36147088657586,7.3171189149109,8.15516105457313,7.197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| |||
|short_description=p1@Runx1t1 | |||
}} |
Latest revision as of 13:31, 26 September 2015
Short description: | p1@Runx1t1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Runx1t1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000006761_5end |
EntrezGene: | Runx1t1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.42e-12 | 23 |
neuroblast (sensu Vertebrata) | 9.42e-12 | 23 |
neuron | 6.01e-08 | 33 |
neuronal stem cell | 6.01e-08 | 33 |
neuroblast | 6.01e-08 | 33 |
electrically signaling cell | 6.01e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.27e-14 | 54 |
neural tube | 1.37e-13 | 52 |
neural rod | 1.37e-13 | 52 |
future spinal cord | 1.37e-13 | 52 |
neural keel | 1.37e-13 | 52 |
neurectoderm | 2.47e-13 | 64 |
neural plate | 2.47e-13 | 64 |
presumptive neural plate | 2.47e-13 | 64 |
gray matter | 2.89e-13 | 34 |
pre-chordal neural plate | 3.60e-13 | 49 |
anterior neural tube | 4.48e-12 | 40 |
central nervous system | 4.82e-12 | 73 |
brain | 6.21e-12 | 47 |
future brain | 6.21e-12 | 47 |
ecto-epithelium | 7.49e-12 | 73 |
regional part of forebrain | 1.55e-11 | 39 |
forebrain | 1.55e-11 | 39 |
future forebrain | 1.55e-11 | 39 |
regional part of brain | 2.47e-11 | 46 |
brain grey matter | 4.65e-11 | 29 |
regional part of telencephalon | 4.65e-11 | 29 |
telencephalon | 4.65e-11 | 29 |
nervous system | 4.73e-11 | 75 |
ectoderm-derived structure | 1.53e-10 | 95 |
ectoderm | 1.53e-10 | 95 |
presumptive ectoderm | 1.53e-10 | 95 |
structure with developmental contribution from neural crest | 1.78e-10 | 92 |
cerebral cortex | 7.20e-08 | 21 |
cerebral hemisphere | 7.20e-08 | 21 |
pallium | 7.20e-08 | 21 |
tube | 8.34e-08 | 114 |
anatomical conduit | 7.94e-07 | 122 |