FFCP PHASE1:Mm9::chr6:36760003..36760024,-: Difference between revisions
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{{FFCP|EntrezGene=19242|HGNC=|MCL_coexpression_id=3559|UniProt=Q3UZI5|association_with_transcript=135bp_to_ENSMUST00000166530_5end|description=CAGE_peak_4_at_Ptn_5end|id=chr6:36760003..36760024,-|ontology_enrichment_celltype=CL:0000540!4.00e-09!33;CL:0000047!4.00e-09!33;CL:0000031!4.00e-09!33;CL:0000404!4.00e-09!33;CL:0000117!5.70e-08!23;CL:0000337!5.70e-08!23;CL:0000221!7.48e-08!44;CL:0000133!7.48e-08!44;CL:0002319!2.39e-07!43;CL:0000393!4.25e-07!39;CL:0000211!4.25e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,3.37e-09,33;CL:0000047,3.37e-09,33;CL:0000031,3.37e-09,33;CL:0000404,3.37e-09,33;CL:0000117,4.93e-08,23;CL:0000337,4.93e-08,23;CL:0000221,1.24e-07,44;CL:0000133,1.24e-07,44;CL:0002319,3.94e-07,43;CL:0000393,4.51e-07,39;CL:0000211,4.51e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.60e-21!73;UBERON:0005743!5.60e-21!73;UBERON:0000073!4.93e-20!75;UBERON:0001016!4.93e-20!75;UBERON:0004121!6.51e-19!102;UBERON:0000924!6.51e-19!102;UBERON:0006601!6.51e-19!102;UBERON:0001049!9.46e-16!52;UBERON:0005068!9.46e-16!52;UBERON:0006241!9.46e-16!52;UBERON:0007135!9.46e-16!52;UBERON:0000955!9.01e-15!50;UBERON:0006238!9.01e-15!50;UBERON:0000033!1.23e-14!63;UBERON:0002346!1.47e-14!71;UBERON:0003075!1.47e-14!71;UBERON:0007284!1.47e-14!71;UBERON:0002616!3.43e-14!49;UBERON:0003080!5.60e-13!40;UBERON:0002020!6.00e-13!34;UBERON:0003056!1.59e-12!49;UBERON:0002780!2.02e-12!39;UBERON:0001890!2.02e-12!39;UBERON:0006240!2.02e-12!39;UBERON:0002791!1.47e-10!29;UBERON:0003528!1.47e-10!29;UBERON:0001893!1.47e-10!29;UBERON:0000468!2.03e-10!333;UBERON:0002021!5.48e-08!10;UBERON:0000411!5.48e-08!10;UBERON:0001950!5.48e-08!10;UBERON:0000153!5.77e-08!94;UBERON:0000956!3.11e-07!21;UBERON:0001869!3.11e-07!21;UBERON:0000203!3.11e-07!21;UBERON:0000922!6.81e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.91e-21,73;UBERON:0001016,7.90e-20,75;UBERON:0004121,3.57e-19,95;UBERON:0000924,3.57e-19,95;UBERON:0006601,3.57e-19,95;UBERON:0000073,1.34e-16,54;UBERON:0010371,3.59e-16,73;UBERON:0001049,1.11e-15,52;UBERON:0005068,1.11e-15,52;UBERON:0006241,1.11e-15,52;UBERON:0007135,1.11e-15,52;UBERON:0002346,3.81e-15,64;UBERON:0003075,3.81e-15,64;UBERON:0007284,3.81e-15,64;UBERON:0010314,4.27e-14,92;UBERON:0000955,2.54e-13,47;UBERON:0006238,2.54e-13,47;UBERON:0003080,7.05e-13,40;UBERON:0002020,7.83e-13,34;UBERON:0002616,9.42e-13,46;UBERON:0003056,1.92e-12,49;UBERON:0002780,2.55e-12,39;UBERON:0001890,2.55e-12,39;UBERON:0006240,2.55e-12,39;UBERON:0003528,1.98e-10,29;UBERON:0002791,1.98e-10,29;UBERON:0001893,1.98e-10,29;UBERON:0002021,4.73e-08,10;UBERON:0000411,4.73e-08,10;UBERON:0001950,4.73e-08,10;UBERON:0000956,4.36e-07,21;UBERON:0001869,4.36e-07,21;UBERON:0000203,4.36e-07,21|phase1_expression=144.294111241419,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.50432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,1.31790010585369,0.183546752161682,1.56478268869608,5.01457859675027,1.75748946187577,0.777719596297134,32.3368633954587,31.6255641602937,0,0,0,5.14518872071894,21.4900079954068,5.67239301505187,22.4571271554154,24.8625760257855,21.5502677192101,5.76035704517525,4.4464739805557,0,0,0,11.085204089181,16.1371688235053,22.3969562586312,21.0609263797437,22.2944459032465,37.9915809257059,46.3823935998388,16.9037302916637,16.6771119571731,12.8690630125403,27.5289702498472,32.0495218593821,35.4831091821922,24.1351906546255,33.5759652020843,28.6502353806218,32.6644108831616,28.7008931116157,27.8092810953794,34.1769159149455,40.148813985347,24.791126294765,0.530083353332288,9.21973033302783,0.289864488701678,0,0,0,0,0,4.21333260395256,0.681721290312231,1.03914401841148,0,89.7172583977455,0,0,0,0.865964164044856,0.253359865475099,2.02209778005913,1.48439043634778,1.55362730188303,15.7348667408714,15.9606500624845,10.6562917409249,9.4552353874984,11.4549206819993,11.7588707135705,15.7083239162094,6.17987419335935,0.289198713839823,2.65383165584962,22.4855921426899,7.28777010919299,10.6672555689749,9.31958806090611,16.6885054296582,11.7290155815535,2.29911349687732,0,0,0,45.3865637396613,45.7500602818627,30.9109706197646,70.0512010374874,75.6917753697778,42.3887610901503,42.831693449888,50.5123244697569,6.96679035416521,2.0217820674694,3.99839526184301,11.5807194236806,16.0931473103431,16.7457780718975,20.646560043493,18.1657452734045,22.163673609279,15.554486276915,13.7112786491678,11.4251036254406,24.2055782614809,29.0319354870516,42.7431678233771,44.4875598760957,40.7455034830935,44.6547236005237,17.1169469463904,0,0,0,13.2560494422721,21.8109235782419,21.6074473753218,22.2540051450098,20.6602443334774,19.4376562238097,14.8821724640261,11.267482858784,9.92505410120941,12.341988743511,9.02921052435024,4.45878452502207,1.75439984910399,3.29325172936576,0.805238512562231,29.8611726961061,22.1244916615462,0,2.90895623329899,25.8078783147633,25.3137972327878,23.0672755766547,15.1262643467507,12.8979265430025,13.3157938278791,5.69434873853414,7.576151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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19242 | |||
|HGNC= | |||
|MCL_coexpression_id=3559 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UZI5 | |||
|association_with_transcript=135bp_to_ENSMUST00000166530_5end | |||
|cluster_id=chr6:36760003..36760024,- | |||
|description=CAGE_peak_4_at_Ptn_5end | |||
|id=chr6:36760003..36760024,- | |||
|ontology_enrichment_celltype=CL:0000540!4.00e-09!33;CL:0000047!4.00e-09!33;CL:0000031!4.00e-09!33;CL:0000404!4.00e-09!33;CL:0000117!5.70e-08!23;CL:0000337!5.70e-08!23;CL:0000221!7.48e-08!44;CL:0000133!7.48e-08!44;CL:0002319!2.39e-07!43;CL:0000393!4.25e-07!39;CL:0000211!4.25e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.37e-09,33;CL:0000047,3.37e-09,33;CL:0000031,3.37e-09,33;CL:0000404,3.37e-09,33;CL:0000117,4.93e-08,23;CL:0000337,4.93e-08,23;CL:0000221,1.24e-07,44;CL:0000133,1.24e-07,44;CL:0002319,3.94e-07,43;CL:0000393,4.51e-07,39;CL:0000211,4.51e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.60e-21!73;UBERON:0005743!5.60e-21!73;UBERON:0000073!4.93e-20!75;UBERON:0001016!4.93e-20!75;UBERON:0004121!6.51e-19!102;UBERON:0000924!6.51e-19!102;UBERON:0006601!6.51e-19!102;UBERON:0001049!9.46e-16!52;UBERON:0005068!9.46e-16!52;UBERON:0006241!9.46e-16!52;UBERON:0007135!9.46e-16!52;UBERON:0000955!9.01e-15!50;UBERON:0006238!9.01e-15!50;UBERON:0000033!1.23e-14!63;UBERON:0002346!1.47e-14!71;UBERON:0003075!1.47e-14!71;UBERON:0007284!1.47e-14!71;UBERON:0002616!3.43e-14!49;UBERON:0003080!5.60e-13!40;UBERON:0002020!6.00e-13!34;UBERON:0003056!1.59e-12!49;UBERON:0002780!2.02e-12!39;UBERON:0001890!2.02e-12!39;UBERON:0006240!2.02e-12!39;UBERON:0002791!1.47e-10!29;UBERON:0003528!1.47e-10!29;UBERON:0001893!1.47e-10!29;UBERON:0000468!2.03e-10!333;UBERON:0002021!5.48e-08!10;UBERON:0000411!5.48e-08!10;UBERON:0001950!5.48e-08!10;UBERON:0000153!5.77e-08!94;UBERON:0000956!3.11e-07!21;UBERON:0001869!3.11e-07!21;UBERON:0000203!3.11e-07!21;UBERON:0000922!6.81e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.91e-21,73;UBERON:0001016,7.90e-20,75;UBERON:0004121,3.57e-19,95;UBERON:0000924,3.57e-19,95;UBERON:0006601,3.57e-19,95;UBERON:0000073,1.34e-16,54;UBERON:0010371,3.59e-16,73;UBERON:0001049,1.11e-15,52;UBERON:0005068,1.11e-15,52;UBERON:0006241,1.11e-15,52;UBERON:0007135,1.11e-15,52;UBERON:0002346,3.81e-15,64;UBERON:0003075,3.81e-15,64;UBERON:0007284,3.81e-15,64;UBERON:0010314,4.27e-14,92;UBERON:0000955,2.54e-13,47;UBERON:0006238,2.54e-13,47;UBERON:0003080,7.05e-13,40;UBERON:0002020,7.83e-13,34;UBERON:0002616,9.42e-13,46;UBERON:0003056,1.92e-12,49;UBERON:0002780,2.55e-12,39;UBERON:0001890,2.55e-12,39;UBERON:0006240,2.55e-12,39;UBERON:0003528,1.98e-10,29;UBERON:0002791,1.98e-10,29;UBERON:0001893,1.98e-10,29;UBERON:0002021,4.73e-08,10;UBERON:0000411,4.73e-08,10;UBERON:0001950,4.73e-08,10;UBERON:0000956,4.36e-07,21;UBERON:0001869,4.36e-07,21;UBERON:0000203,4.36e-07,21 | |||
|phase1_expression=144.294111241419,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.50432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,1.31790010585369,0.183546752161682,1.56478268869608,5.01457859675027,1.75748946187577,0.777719596297134,32.3368633954587,31.6255641602937,0,0,0,5.14518872071894,21.4900079954068,5.67239301505187,22.4571271554154,24.8625760257855,21.5502677192101,5.76035704517525,4.4464739805557,0,0,0,11.085204089181,16.1371688235053,22.3969562586312,21.0609263797437,22.2944459032465,37.9915809257059,46.3823935998388,16.9037302916637,16.6771119571731,12.8690630125403,27.5289702498472,32.0495218593821,35.4831091821922,24.1351906546255,33.5759652020843,28.6502353806218,32.6644108831616,28.7008931116157,27.8092810953794,34.1769159149455,40.148813985347,24.791126294765,0.530083353332288,9.21973033302783,0.289864488701678,0,0,0,0,0,4.21333260395256,0.681721290312231,1.03914401841148,0,89.7172583977455,0,0,0,0.865964164044856,0.253359865475099,2.02209778005913,1.48439043634778,1.55362730188303,15.7348667408714,15.9606500624845,10.6562917409249,9.4552353874984,11.4549206819993,11.7588707135705,15.7083239162094,6.17987419335935,0.289198713839823,2.65383165584962,22.4855921426899,7.28777010919299,10.6672555689749,9.31958806090611,16.6885054296582,11.7290155815535,2.29911349687732,0,0,0,45.3865637396613,45.7500602818627,30.9109706197646,70.0512010374874,75.6917753697778,42.3887610901503,42.831693449888,50.5123244697569,6.96679035416521,2.0217820674694,3.99839526184301,11.5807194236806,16.0931473103431,16.7457780718975,20.646560043493,18.1657452734045,22.163673609279,15.554486276915,13.7112786491678,11.4251036254406,24.2055782614809,29.0319354870516,42.7431678233771,44.4875598760957,40.7455034830935,44.6547236005237,17.1169469463904,0,0,0,13.2560494422721,21.8109235782419,21.6074473753218,22.2540051450098,20.6602443334774,19.4376562238097,14.8821724640261,11.267482858784,9.92505410120941,12.341988743511,9.02921052435024,4.45878452502207,1.75439984910399,3.29325172936576,0.805238512562231,29.8611726961061,22.1244916615462,0,2.90895623329899,25.8078783147633,25.3137972327878,23.0672755766547,15.1262643467507,12.8979265430025,13.3157938278791,5.69434873853414,7.5761519173045,13.3207660664143,14.1259095149217,12.2827374885046,1.79763881730844,3.8904848977445,1.7922714592893,14.7940962743404,18.965253093215,15.7790829942313,13.0336849821001,13.3827216145662,12.3439043006961,4.7427402843193,0.738050739898011,1.09899109488962,0.370191491765402,0,6.17326891149548,5.11053387294328,0.224862112384854,1.01430060694251,1.20588579876208,2.03700681425136,0.287696137450811,0.810676133875177,0.274561413188081,5.75072826109418,1.11642284300551,1.87222603868736,0,0,0.482443521363367,0.184753190166605,30.508117295048,9.77789858652155,8.99648954608497,3.98973422090454,1.67506257441816,3.80869825417622,1.95133647857799,4.09851374676097,2.43611158613652,1.91345722388985,1.14704320301017,2.59027472798843,0.578596234326046,0,0,1.47529281905711,1.65562047782839,43.990861656655,40.6724552474945,296.722251131783,4.79694761688309,14.5133780931478,12.8844785617891,14.8642144435631,30.1100685420216,23.3938607786514,15.8522857241746,22.2645885921192,19.5811424800579,18.9738133414331,49.4834827289583,7.38088443082997,34.188595904113,46.2598964564156,18.3116836499514,2.65490276679926,28.6481150662878,23.8835610002153,20.5579536933929,11.5167738223501,20.2907197642992,19.3821219876166,21.4484900391728,27.8067955140083,7.58488219045958,1.05418608574999,2.06271086496374,54.4703369206061,16.0254373687866,10.8661294377514,16.5039516974326,22.1675292052842,23.7230527410754,32.4161570586178,9.74287837166718,12.9069439435041,2.96564899209348,10.8058915046931,10.5527201882547,25.3499149912572,25.2108026199691,17.6671069124642,20.1893306686425,2.33184669303881,32.6348531538497,0,24.3536504196603,13.519200497989,0.753473828018764,0.27338845544205,0.228778173206523,2.20971958992012,1.39951452323658,1.79659965945751,11.4560474161814,24.0415355121663,30.0912811347736,31.537559519966,28.0178316659388,29.6973086694802,24.9499040811918,24.5480763504248,8.63794608547298,5.70305882483889,0,0,10.7651913151665,13.2366792365678,26.4453616147905,15.2408591703723,22.8090769412551,22.5325898199848,14.3224823328345,3.67007705489988,0.483168241652012,1.15212002503146,2.21207784439725,22.5024988972082,23.1099653620861,9.48422007737904,5.54982756569192,2.58285761215644,2.16351809135944,1.62458479892035,2.42319479875554,1.21930890648,1.51239277705261,0.682205165178267,0.865906574762965,0.467507608726276,8.61575457737803,0,0,0,2.89784391048286,52.9264580772333,20.3298302936664,17.3638387054043,5.01572104035363,92.0545503465818,90.6840715919138,100.829610365334,56.3678438087295,91.1159751294954,67.985450765073,61.4270475210943,65.7468956707362,65.7056493027097,75.5930055157657,8.71813719707084,43.0946863273114,30.7320490357442,23.3382448385562,10.0614318061432,10.8467669985508,18.0019849519308,22.8698913535173,25.0316983481616,21.98465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| |||
|short_description=p4@Ptn | |||
}} | |||
Latest revision as of 03:01, 27 September 2015
| Short description: | p4@Ptn |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Ptn_5end |
| Coexpression cluster: | MCL_coexpression_mm9:3559 |
| Association with transcript: | 135bp_to_ENSMUST00000166530_5end |
| EntrezGene: | Ptn |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neuron | 3.37e-09 | 33 |
| neuronal stem cell | 3.37e-09 | 33 |
| neuroblast | 3.37e-09 | 33 |
| electrically signaling cell | 3.37e-09 | 33 |
| CNS neuron (sensu Vertebrata) | 4.93e-08 | 23 |
| neuroblast (sensu Vertebrata) | 4.93e-08 | 23 |
| ectodermal cell | 1.24e-07 | 44 |
| neurectodermal cell | 1.24e-07 | 44 |
| neural cell | 3.94e-07 | 43 |
| electrically responsive cell | 4.51e-07 | 39 |
| electrically active cell | 4.51e-07 | 39 |
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 5.91e-21 | 73 |
| nervous system | 7.90e-20 | 75 |
| ectoderm-derived structure | 3.57e-19 | 95 |
| ectoderm | 3.57e-19 | 95 |
| presumptive ectoderm | 3.57e-19 | 95 |
| regional part of nervous system | 1.34e-16 | 54 |
| ecto-epithelium | 3.59e-16 | 73 |
| neural tube | 1.11e-15 | 52 |
| neural rod | 1.11e-15 | 52 |
| future spinal cord | 1.11e-15 | 52 |
| neural keel | 1.11e-15 | 52 |
| neurectoderm | 3.81e-15 | 64 |
| neural plate | 3.81e-15 | 64 |
| presumptive neural plate | 3.81e-15 | 64 |
| structure with developmental contribution from neural crest | 4.27e-14 | 92 |
| brain | 2.54e-13 | 47 |
| future brain | 2.54e-13 | 47 |
| anterior neural tube | 7.05e-13 | 40 |
| gray matter | 7.83e-13 | 34 |
| regional part of brain | 9.42e-13 | 46 |
| pre-chordal neural plate | 1.92e-12 | 49 |
| regional part of forebrain | 2.55e-12 | 39 |
| forebrain | 2.55e-12 | 39 |
| future forebrain | 2.55e-12 | 39 |
| brain grey matter | 1.98e-10 | 29 |
| regional part of telencephalon | 1.98e-10 | 29 |
| telencephalon | 1.98e-10 | 29 |
| occipital lobe | 4.73e-08 | 10 |
| visual cortex | 4.73e-08 | 10 |
| neocortex | 4.73e-08 | 10 |
| cerebral cortex | 4.36e-07 | 21 |
| cerebral hemisphere | 4.36e-07 | 21 |
| pallium | 4.36e-07 | 21 |