FFCP PHASE1:Mm9::chrX:92853731..92853751,-: Difference between revisions
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{{FFCP|EntrezGene=245522|HGNC=|MCL_coexpression_id=399|UniProt=Q05BE0|association_with_transcript=0bp_to_ENSMUST00000120620_5end|description=CAGE_peak_2_at_Zc4h2_5end|id=chrX:92853731..92853751,-|ontology_enrichment_celltype=CL:0000540!1.81e-13!33;CL:0000047!1.81e-13!33;CL:0000031!1.81e-13!33;CL:0000404!1.81e-13!33;CL:0000393!2.00e-12!39;CL:0000211!2.00e-12!39;CL:0000117!7.49e-10!23;CL:0000337!7.49e-10!23;CL:0000221!2.89e-07!44;CL:0000133!2.89e-07!44;CL:0002319!3.94e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,1.04e-13,33;CL:0000047,1.04e-13,33;CL:0000031,1.04e-13,33;CL:0000404,1.04e-13,33;CL:0000393,1.21e-12,39;CL:0000211,1.21e-12,39;CL:0000117,5.10e-10,23;CL:0000337,5.10e-10,23;CL:0000221,2.90e-07,44;CL:0000133,2.90e-07,44;CL:0002319,3.98e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.40e-20!73;UBERON:0005743!4.40e-20!73;UBERON:0000073!7.50e-20!75;UBERON:0001016!7.50e-20!75;UBERON:0002346!3.31e-19!71;UBERON:0003075!3.31e-19!71;UBERON:0007284!3.31e-19!71;UBERON:0000033!2.83e-17!63;UBERON:0001049!5.95e-17!52;UBERON:0005068!5.95e-17!52;UBERON:0006241!5.95e-17!52;UBERON:0007135!5.95e-17!52;UBERON:0003056!2.40e-16!49;UBERON:0004121!2.63e-16!102;UBERON:0000924!2.63e-16!102;UBERON:0006601!2.63e-16!102;UBERON:0000955!1.66e-15!50;UBERON:0006238!1.66e-15!50;UBERON:0002616!7.61e-15!49;UBERON:0002020!3.46e-14!34;UBERON:0003080!1.76e-13!40;UBERON:0000153!5.36e-13!94;UBERON:0002780!5.80e-13!39;UBERON:0001890!5.80e-13!39;UBERON:0006240!5.80e-13!39;UBERON:0002791!8.59e-12!29;UBERON:0003528!8.59e-12!29;UBERON:0001893!8.59e-12!29;UBERON:0007811!6.15e-11!86;UBERON:0000956!2.20e-08!21;UBERON:0001869!2.20e-08!21;UBERON:0000203!2.20e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.36e-22,64;UBERON:0003075,9.36e-22,64;UBERON:0007284,9.36e-22,64;UBERON:0001017,2.75e-20,73;UBERON:0001016,4.72e-20,75;UBERON:0000073,1.67e-17,54;UBERON:0004121,2.67e-17,95;UBERON:0000924,2.67e-17,95;UBERON:0006601,2.67e-17,95;UBERON:0001049,3.88e-17,52;UBERON:0005068,3.88e-17,52;UBERON:0006241,3.88e-17,52;UBERON:0007135,3.88e-17,52;UBERON:0010371,6.11e-17,73;UBERON:0003056,1.50e-16,49;UBERON:0000955,7.59e-15,47;UBERON:0006238,7.59e-15,47;UBERON:0010314,7.98e-15,92;UBERON:0002020,2.44e-14,34;UBERON:0002616,3.53e-14,46;UBERON:0003080,1.25e-13,40;UBERON:0002780,4.22e-13,39;UBERON:0001890,4.22e-13,39;UBERON:0006240,4.22e-13,39;UBERON:0003528,6.72e-12,29;UBERON:0002791,6.72e-12,29;UBERON:0001893,6.72e-12,29;UBERON:0000956,1.99e-08,21;UBERON:0001869,1.99e-08,21;UBERON:0000203,1.99e-08,21|phase1_expression=4.00372117761985,0,0,0,0,0,0,1.16210991097419,0.140788722151667,0,0,0.239316476986009,1.02720437958723,2.18551006047494,0,1.21485160433896,0,0.946386496074713,1.50825876966313,0.84877930359606,2.89147186513637,1.78723712161594,1.04479915655574,0.47997726838022,0.68822784320151,0,0,0,0,0,0.221730510655305,0,0,0,0.577703239502549,0.166234645358492,0,0,0.7813353445238,0.523523743973798,0,0,0.971020706062307,3.39921408534059,3.04130793658544,2.38610777810186,0,0.872100625521786,0.659058548203415,0.194429899074283,0.419959264876088,0,0.671130424230945,0.725362142011344,0.672187598284928,2.57259436035947,2.29226751951005,2.06268836910977,5.05791152148994,10.0508286061686,3.80298842103708,0,0,1.3498495759221,2.96659908770092,1.4209602298922,0.299600110518405,0.768436610643109,9.53944433237994,7.42532660824299,5.25812403378455,3.99911378165325,8.1721360152097,11.7591167246356,8.4344014496048,5.51531271966013,4.40463523997555,8.2996769755372,4.6081959976873,7.64940468835124,9.05727671663856,9.89735404057844,5.862842979029,5.6276261003168,5.50073691996516,10.606629077052,13.0981946335175,10.8111678578674,2.04460721999597,3.02286240427142,3.76823835312181,0.860423876981386,0,0,1.29955283489534,0.448026887097336,1.54488862144927,7.15807354827843,3.89679006904303,3.18005617059306,4.3661460130771,2.56652954828636,0,0,1.29894624606728,1.26679932737549,1.51657333504435,1.1418387971906,2.84831672011889,1.33597925158342,3.12273588179045,2.43572382649713,2.07553947530453,1.50722640552623,1.29347577849275,1.38233250462643,0.741584903203122,1.73519228303894,0.884610551949874,1.13236794963186,0.883366073841574,0.969750506270444,0,11.1256702864388,9.21565509979202,0.255457055208591,1.67741174308288,1.19980546198682,2.28726408731516,8.98743836428936,8.23501085073528,10.5549655774806,9.38651329038293,7.16003280524926,8.3115217823824,7.78758062725237,4.17541391786297,1.11966273549084,1.0108910337347,1.47309299120532,7.80722657776222,10.5754968039398,10.2635413989049,6.78171680260718,5.71506592871154,6.79002717509704,6.27801554550183,4.65666067330228,10.7783996466421,13.615637772083,8.2697028357056,5.04150184583422,4.44875598760957,5.2237824978325,1.85203922767149,5.17489093728082,1.40442637462647,1.80143534980301,2.27330799516474,6.00664740352955,4.92504725960302,2.52086886045421,3.78791576936336,1.37734962223183,2.46827380619805,2.09280550275367,1.87791380979733,1.28441876603886,0.6582393996539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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=245522 | |||
|HGNC= | |||
|MCL_coexpression_id=399 | |||
|TSSclassifier=NA | |||
|UniProt=Q05BE0 | |||
|association_with_transcript=0bp_to_ENSMUST00000120620_5end | |||
|cluster_id=chrX:92853731..92853751,- | |||
|description=CAGE_peak_2_at_Zc4h2_5end | |||
|id=chrX:92853731..92853751,- | |||
|ontology_enrichment_celltype=CL:0000540!1.81e-13!33;CL:0000047!1.81e-13!33;CL:0000031!1.81e-13!33;CL:0000404!1.81e-13!33;CL:0000393!2.00e-12!39;CL:0000211!2.00e-12!39;CL:0000117!7.49e-10!23;CL:0000337!7.49e-10!23;CL:0000221!2.89e-07!44;CL:0000133!2.89e-07!44;CL:0002319!3.94e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.04e-13,33;CL:0000047,1.04e-13,33;CL:0000031,1.04e-13,33;CL:0000404,1.04e-13,33;CL:0000393,1.21e-12,39;CL:0000211,1.21e-12,39;CL:0000117,5.10e-10,23;CL:0000337,5.10e-10,23;CL:0000221,2.90e-07,44;CL:0000133,2.90e-07,44;CL:0002319,3.98e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.40e-20!73;UBERON:0005743!4.40e-20!73;UBERON:0000073!7.50e-20!75;UBERON:0001016!7.50e-20!75;UBERON:0002346!3.31e-19!71;UBERON:0003075!3.31e-19!71;UBERON:0007284!3.31e-19!71;UBERON:0000033!2.83e-17!63;UBERON:0001049!5.95e-17!52;UBERON:0005068!5.95e-17!52;UBERON:0006241!5.95e-17!52;UBERON:0007135!5.95e-17!52;UBERON:0003056!2.40e-16!49;UBERON:0004121!2.63e-16!102;UBERON:0000924!2.63e-16!102;UBERON:0006601!2.63e-16!102;UBERON:0000955!1.66e-15!50;UBERON:0006238!1.66e-15!50;UBERON:0002616!7.61e-15!49;UBERON:0002020!3.46e-14!34;UBERON:0003080!1.76e-13!40;UBERON:0000153!5.36e-13!94;UBERON:0002780!5.80e-13!39;UBERON:0001890!5.80e-13!39;UBERON:0006240!5.80e-13!39;UBERON:0002791!8.59e-12!29;UBERON:0003528!8.59e-12!29;UBERON:0001893!8.59e-12!29;UBERON:0007811!6.15e-11!86;UBERON:0000956!2.20e-08!21;UBERON:0001869!2.20e-08!21;UBERON:0000203!2.20e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.36e-22,64;UBERON:0003075,9.36e-22,64;UBERON:0007284,9.36e-22,64;UBERON:0001017,2.75e-20,73;UBERON:0001016,4.72e-20,75;UBERON:0000073,1.67e-17,54;UBERON:0004121,2.67e-17,95;UBERON:0000924,2.67e-17,95;UBERON:0006601,2.67e-17,95;UBERON:0001049,3.88e-17,52;UBERON:0005068,3.88e-17,52;UBERON:0006241,3.88e-17,52;UBERON:0007135,3.88e-17,52;UBERON:0010371,6.11e-17,73;UBERON:0003056,1.50e-16,49;UBERON:0000955,7.59e-15,47;UBERON:0006238,7.59e-15,47;UBERON:0010314,7.98e-15,92;UBERON:0002020,2.44e-14,34;UBERON:0002616,3.53e-14,46;UBERON:0003080,1.25e-13,40;UBERON:0002780,4.22e-13,39;UBERON:0001890,4.22e-13,39;UBERON:0006240,4.22e-13,39;UBERON:0003528,6.72e-12,29;UBERON:0002791,6.72e-12,29;UBERON:0001893,6.72e-12,29;UBERON:0000956,1.99e-08,21;UBERON:0001869,1.99e-08,21;UBERON:0000203,1.99e-08,21 | |||
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| |||
|short_description=p2@Zc4h2 | |||
}} |
Latest revision as of 00:50, 2 October 2015
Short description: | p2@Zc4h2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Zc4h2_5end |
Coexpression cluster: | MCL_coexpression_mm9:399 |
Association with transcript: | 0bp_to_ENSMUST00000120620_5end |
EntrezGene: | Zc4h2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.04e-13 | 33 |
neuronal stem cell | 1.04e-13 | 33 |
neuroblast | 1.04e-13 | 33 |
electrically signaling cell | 1.04e-13 | 33 |
electrically responsive cell | 1.21e-12 | 39 |
electrically active cell | 1.21e-12 | 39 |
CNS neuron (sensu Vertebrata) | 5.10e-10 | 23 |
neuroblast (sensu Vertebrata) | 5.10e-10 | 23 |
ectodermal cell | 2.90e-07 | 44 |
neurectodermal cell | 2.90e-07 | 44 |
neural cell | 3.98e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 9.36e-22 | 64 |
neural plate | 9.36e-22 | 64 |
presumptive neural plate | 9.36e-22 | 64 |
central nervous system | 2.75e-20 | 73 |
nervous system | 4.72e-20 | 75 |
regional part of nervous system | 1.67e-17 | 54 |
ectoderm-derived structure | 2.67e-17 | 95 |
ectoderm | 2.67e-17 | 95 |
presumptive ectoderm | 2.67e-17 | 95 |
neural tube | 3.88e-17 | 52 |
neural rod | 3.88e-17 | 52 |
future spinal cord | 3.88e-17 | 52 |
neural keel | 3.88e-17 | 52 |
ecto-epithelium | 6.11e-17 | 73 |
pre-chordal neural plate | 1.50e-16 | 49 |
brain | 7.59e-15 | 47 |
future brain | 7.59e-15 | 47 |
structure with developmental contribution from neural crest | 7.98e-15 | 92 |
gray matter | 2.44e-14 | 34 |
regional part of brain | 3.53e-14 | 46 |
anterior neural tube | 1.25e-13 | 40 |
regional part of forebrain | 4.22e-13 | 39 |
forebrain | 4.22e-13 | 39 |
future forebrain | 4.22e-13 | 39 |
brain grey matter | 6.72e-12 | 29 |
regional part of telencephalon | 6.72e-12 | 29 |
telencephalon | 6.72e-12 | 29 |
cerebral cortex | 1.99e-08 | 21 |
cerebral hemisphere | 1.99e-08 | 21 |
pallium | 1.99e-08 | 21 |