FF:10165-103B3: Difference between revisions

Latest revision as of 12:24, 3 June 2020

Name:	locus coeruleus, adult, donor10252
Species:	Human (Homo sapiens)
Library ID:	CNhs12322
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	locus coeruleus
dev stage	NA
sex	female
age	76
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005792

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12322		CAGE		DRX008677		DRR009549

Accession ID Hg19

Library id		BAM		CTSS
CNhs12322		DRZ000974		DRZ002359

Accession ID Hg38

Library id		BAM		CTSS
CNhs12322		DRZ012324		DRZ013709

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10036		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.184
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	1.112
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.328
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0539
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.455
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.285
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.102
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0356
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.22
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0539
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0539
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.0539
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.145
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.494
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0159
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.189
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.798
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.184
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0539
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.189
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0539
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.183
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0539
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.807
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0539
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.2
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.39
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.00834
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.102
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.413
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0539
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.529
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0756
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0456
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.592
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.102
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0.0539
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.0539
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.184
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.547
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.145
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.689
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.964
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.102
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.202
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.254
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0539
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.343
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.254
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.0539
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.621
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.102
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.34
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0539
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12322

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0154
MA0003.1	MA0003.1	0.213
MA0004.1	MA0004.1	0.292
MA0006.1	MA0006.1	0.373
MA0007.1	MA0007.1	0.366
MA0009.1	MA0009.1	0.073
MA0014.1	MA0014.1	0.819
MA0017.1	MA0017.1	0.0017
MA0018.2	MA0018.2	0.161
MA0019.1	MA0019.1	0.965
MA0024.1	MA0024.1	0.71
MA0025.1	MA0025.1	0.684
MA0027.1	MA0027.1	0.526
MA0028.1	MA0028.1	0.0843
MA0029.1	MA0029.1	0.0755
MA0030.1	MA0030.1	0.121
MA0031.1	MA0031.1	0.259
MA0035.2	MA0035.2	0.00814
MA0038.1	MA0038.1	0.256
MA0039.2	MA0039.2	0.275
MA0040.1	MA0040.1	0.643
MA0041.1	MA0041.1	0.553
MA0042.1	MA0042.1	0.972
MA0043.1	MA0043.1	0.979
MA0046.1	MA0046.1	0.00274
MA0047.2	MA0047.2	0.141
MA0048.1	MA0048.1	0.146
MA0050.1	MA0050.1	0.0393
MA0051.1	MA0051.1	0.109
MA0052.1	MA0052.1	0.404
MA0055.1	MA0055.1	0.00339
MA0057.1	MA0057.1	0.785
MA0058.1	MA0058.1	0.357
MA0059.1	MA0059.1	0.0795
MA0060.1	MA0060.1	0.244
MA0061.1	MA0061.1	0.0027
MA0062.2	MA0062.2	0.00448
MA0065.2	MA0065.2	6.38739e-4
MA0066.1	MA0066.1	0.0119
MA0067.1	MA0067.1	0.623
MA0068.1	MA0068.1	0.893
MA0069.1	MA0069.1	0.833
MA0070.1	MA0070.1	0.28
MA0071.1	MA0071.1	0.037
MA0072.1	MA0072.1	0.427
MA0073.1	MA0073.1	0.432
MA0074.1	MA0074.1	0.209
MA0076.1	MA0076.1	0.167
MA0077.1	MA0077.1	0.0328
MA0078.1	MA0078.1	0.992
MA0079.2	MA0079.2	0.639
MA0080.2	MA0080.2	3.68358e-7
MA0081.1	MA0081.1	0.0371
MA0083.1	MA0083.1	0.0164
MA0084.1	MA0084.1	0.266
MA0087.1	MA0087.1	0.329
MA0088.1	MA0088.1	0.245
MA0090.1	MA0090.1	0.195
MA0091.1	MA0091.1	0.564
MA0092.1	MA0092.1	0.315
MA0093.1	MA0093.1	0.354
MA0099.2	MA0099.2	1.323e-19
MA0100.1	MA0100.1	0.648
MA0101.1	MA0101.1	0.00136
MA0102.2	MA0102.2	0.328
MA0103.1	MA0103.1	0.0701
MA0104.2	MA0104.2	0.375
MA0105.1	MA0105.1	1.53698e-4
MA0106.1	MA0106.1	0.0132
MA0107.1	MA0107.1	9.84369e-4
MA0108.2	MA0108.2	0.655
MA0111.1	MA0111.1	0.577
MA0112.2	MA0112.2	8.25204e-4
MA0113.1	MA0113.1	0.637
MA0114.1	MA0114.1	0.00346
MA0115.1	MA0115.1	0.786
MA0116.1	MA0116.1	0.00378
MA0117.1	MA0117.1	0.875
MA0119.1	MA0119.1	0.147
MA0122.1	MA0122.1	0.888
MA0124.1	MA0124.1	0.877
MA0125.1	MA0125.1	0.256
MA0131.1	MA0131.1	0.94
MA0135.1	MA0135.1	0.0334
MA0136.1	MA0136.1	1.35442e-10
MA0137.2	MA0137.2	0.177
MA0138.2	MA0138.2	0.236
MA0139.1	MA0139.1	0.486
MA0140.1	MA0140.1	0.00491
MA0141.1	MA0141.1	0.00475
MA0142.1	MA0142.1	0.358
MA0143.1	MA0143.1	0.115
MA0144.1	MA0144.1	0.744
MA0145.1	MA0145.1	0.29
MA0146.1	MA0146.1	0.027
MA0147.1	MA0147.1	0.198
MA0148.1	MA0148.1	0.121
MA0149.1	MA0149.1	0.0179
MA0150.1	MA0150.1	3.6487e-4
MA0152.1	MA0152.1	0.578
MA0153.1	MA0153.1	0.2
MA0154.1	MA0154.1	0.0389
MA0155.1	MA0155.1	0.643
MA0156.1	MA0156.1	9.18479e-7
MA0157.1	MA0157.1	0.924
MA0159.1	MA0159.1	0.0106
MA0160.1	MA0160.1	0.0264
MA0162.1	MA0162.1	0.147
MA0163.1	MA0163.1	2.69032e-7
MA0164.1	MA0164.1	0.659
MA0258.1	MA0258.1	0.0171
MA0259.1	MA0259.1	0.713

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12322

Novel motif	Logo	P-value
1	1	0.0688
10	10	0.0453
100	100	0.404
101	101	0.621
102	102	0.831
103	103	0.0309
104	104	0.0894
105	105	0.103
106	106	0.0188
107	107	0.0774
108	108	0.999
109	109	0.00239
11	11	0.012
110	110	0.0507
111	111	0.16
112	112	0.489
113	113	0.537
114	114	0.128
115	115	0.985
116	116	0.23
117	117	0.0144
118	118	0.217
119	119	0.275
12	12	0.537
120	120	0.191
121	121	0.481
122	122	0.977
123	123	0.429
124	124	0.205
125	125	0.481
126	126	0.034
127	127	0.461
128	128	0.129
129	129	0.408
13	13	0.0024
130	130	0.123
131	131	0.0198
132	132	0.499
133	133	0.0363
134	134	0.448
135	135	0.145
136	136	0.00363
137	137	0.582
138	138	0.933
139	139	0.226
14	14	0.986
140	140	0.51
141	141	0.617
142	142	0.88
143	143	0.0185
144	144	0.88
145	145	0.284
146	146	0.531
147	147	0.714
148	148	0.318
149	149	0.105
15	15	0.0684
150	150	0.122
151	151	0.694
152	152	0.0888
153	153	0.833
154	154	0.434
155	155	0.884
156	156	0.286
157	157	0.366
158	158	0.37
159	159	0.0106
16	16	0.0397
160	160	0.2
161	161	0.213
162	162	0.936
163	163	0.632
164	164	0.0172
165	165	0.214
166	166	0.877
167	167	0.985
168	168	0.494
169	169	0.0137
17	17	0.091
18	18	0.0774
19	19	0.281
2	2	0.804
20	20	0.233
21	21	0.0583
22	22	0.256
23	23	0.356
24	24	0.0374
25	25	0.54
26	26	6.14321e-4
27	27	0.514
28	28	0.826
29	29	0.00751
3	3	0.0611
30	30	0.926
31	31	0.93
32	32	0.015
33	33	0.0584
34	34	0.687
35	35	0.531
36	36	0.246
37	37	0.05
38	38	0.367
39	39	0.293
4	4	0.827
40	40	0.0589
41	41	0.212
42	42	0.242
43	43	0.137
44	44	0.153
45	45	0.644
46	46	0.0398
47	47	0.072
48	48	0.0478
49	49	0.278
5	5	0.723
50	50	0.418
51	51	0.303
52	52	0.546
53	53	0.721
54	54	0.437
55	55	0.493
56	56	0.467
57	57	0.353
58	58	0.318
59	59	0.0609
6	6	0.677
60	60	0.0734
61	61	0.0893
62	62	0.141
63	63	0.201
64	64	0.15
65	65	0.244
66	66	0.123
67	67	0.391
68	68	0.184
69	69	0.339
7	7	0.0686
70	70	0.0349
71	71	0.00679
72	72	0.289
73	73	0.0464
74	74	0.873
75	75	0.0315
76	76	0.379
77	77	0.163
78	78	0.00108
79	79	0.289
8	8	0.061
80	80	0.267
81	81	0.494
82	82	0.665
83	83	0.0385
84	84	0.603
85	85	0.451
86	86	0.177
87	87	4.04906e-4
88	88	0.742
89	89	0.178
9	9	0.367
90	90	0.0917
91	91	0.701
92	92	0.459
93	93	0.663
94	94	0.139
95	95	0.0184
96	96	0.923
97	97	0.654
98	98	0.2
99	99	0.51

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12322

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0011487 human locus coeruleus- adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000988 (pons)
0002148 (locus ceruleus)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0006331 (brainstem nucleus)
0009662 (hindbrain nucleus)
0000125 (neural nucleus)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002298 (brainstem)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011487 (human locus coeruleus- adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008568
+|DRA_sample_Accession=CAGE@SAMD00005792
-|accession_numbers=CAGE;DRX008677;DRR009549;DRZ000974;DRZ002359
+|HumanCAGEScanFiles=NCig10036;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008677;DRR009549;DRZ000974;DRZ002359;DRZ012324;DRZ013709
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000988,UBERON:0002148,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0006331,UBERON:0009662,UBERON:0000125,UBERON:0002020,UBERON:0010317,UBERON:0002308,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002298,UBERON:0002028
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.68!476.83!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.35!222.28!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.34!220.17!SOX10;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.28!187.90!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!2.07!239.34!C11orf9;;chr8:53322304..53322340,-!p1@ST18!2.02!102.61!ST18;;chr3:181429704..181429722,+!p1@SOX2!1.91!80.27!SOX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.86!70.74!NKX6-2;;chr2:145277882..145277967,-!p3@ZEB2!1.74!91.64!ZEB2;;chr21:34398234..34398250,+!p1@OLIG2!1.71!50.12!OLIG2;;chr9:114287433..114287513,+!p1@ZNF483!1.70!122.84!ZNF483;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.68!47.34!POU3F3;;chr12:26277817..26277863,-!p2@BHLHE41!1.67!61.22!BHLHE41;;chr16:1031762..1031781,+!p1@SOX8!1.63!41.92!SOX8;;chr8:53322347..53322378,-!p2@ST18!1.61!39.93!ST18;;chr12:106976678..106976708,+!p2@RFX4!1.58!37.29!RFX4;;chr10:48355030..48355090,+!p1@ZNF488!1.56!45.62!ZNF488;;chr12:26277956..26277980,-!p1@BHLHE41!1.53!115.17!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.53!46.41!ZBTB16;;chr21:34442540..34442560,+!p2@OLIG1!1.53!33.06!OLIG1;;chr19:46801639..46801699,+!p1@HIF3A!1.53!32.93!HIF3A;;chr12:54779511..54779577,-!p5@ZNF385A!1.53!32.93!ZNF385A;;chr3:181429741..181429767,+!p2@SOX2!1.46!27.77!SOX2;;chr16:85932760..85932775,+!p1@IRF8!1.45!27.50!IRF8;;chr11:47400078..47400106,-!p1@SPI1!1.45!27.37!SPI1;;chr12:106976774..106976788,+!p1@RFX4!1.43!25.65!RFX4;;chr4:81118647..81118666,+!p1@PRDM8!1.39!31.07!PRDM8;;chr3:126076242..126076257,-!p1@KLF15!1.39!28.83!KLF15;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.37!22.35!POU3F3;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.37!22.35!SMARCE1;;chr15:80696703..80696754,+!p1@ARNT2!1.36!28.69!ARNT2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.29!ZBED1;;chr1:214161272..214161322,+!p1@PROX1!1.34!29.49!PROX1;;chr1:40105299..40105326,-!p1@HEYL!1.32!20.10!HEYL;;chr19:13135386..13135435,+!p4@NFIX!1.32!20.10!NFIX;;chr1:61548069..61548102,+!p3@NFIA!1.30!45.09!NFIA;;chr7:63505799..63505904,+!p1@ZNF727!1.30!18.78!ZNF727;;chr2:166326200..166326216,+!p1@CSRNP3!1.27!25.65!CSRNP3;;chr14:33408072..33408114,+!p2@NPAS3!1.27!20.89!NPAS3;;chr6:28321971..28321995,-!p1@ZNF323!1.25!16.66!ZNF323;;chr3:187463179..187463201,-!p2@BCL6!1.24!66.12!BCL6;;chr2:95963052..95963106,+!p1@KCNIP3!1.23!16.13!KCNIP3;;chr11:8102846..8102892,+!p1@TUB!1.22!21.95!TUB;;chr19:30863271..30863338,+!p1@ZNF536!1.22!15.74!ZNF536;;chr10:64134120..64134183,+!p1@ZNF365!1.21!18.51!ZNF365;;chr9:77112244..77112262,+!p1@RORB!1.21!17.06!RORB;;chr14:33403881..33403924,+!p1@NPAS3!1.21!15.21!NPAS3;;chr6:19837592..19837621,+!p1@ID4!1.20!88.73!ID4;;chr16:51185318..51185348,-!p2@SALL1!1.17!13.88!SALL1;;chr4:57547751..57547764,-!p6@HOPX!1.17!13.75!HOPX;;chr11:113930291..113930339,+!p2@ZBTB16!1.14!21.02!ZBTB16;;chr16:51185172..51185197,-!p1@SALL1!1.14!12.69!SALL1;;chr3:126076264..126076305,-!p2@KLF15!1.13!17.59!KLF15;;chr17:7492684..7492778,-!p2@SOX15!1.12!25.65!SOX15;;chr12:26277929..26277955,-!p3@BHLHE41!1.12!17.19!BHLHE41;;chr19:46800289..46800327,+!p2@HIF3A!1.12!12.30!HIF3A;;chr14:33403648..33403710,+!p3@NPAS3!1.12!12.17!NPAS3;;chr17:38219209..38219230,+!p1@THRA!1.11!152.99!THRA;;chr3:114343039..114343085,-!p8@ZBTB20!1.11!11.90!ZBTB20;;chr9:14314946..14314983,-!p8@NFIB!1.10!11.64!NFIB;;chr15:80733570..80733659,+!p2@ARNT2!1.09!11.24!ARNT2;;chr2:214016314..214016343,-!p2@IKZF2!1.07!18.25!IKZF2;;chr4:57547454..57547469,-!p1@HOPX!1.07!10.84!HOPX;;chr5:71803177..71803255,-!p1@ZNF366!1.07!10.84!ZNF366;;chr7:115670804..115670825,-!p1@TFEC!1.07!10.84!TFEC;;chr19:57352109..57352153,-!p2@ZIM2!1.07!10.71!ZIM2;;chr19:21512144..21512191,-!p2@ZNF708!1.06!48.93!ZNF708;;chr3:114819124..114819200,-!p3@ZBTB20!1.06!24.60!ZBTB20;;chr19:38085768..38085821,+!p1@ZNF540!1.05!15.47!ZNF540;;chr1:116383738..116383752,-!p1@NHLH2!1.05!10.31!NHLH2;;chr12:103351444..103351461,+!p1@ASCL1!1.05!10.31!ASCL1;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!10.05!ZBTB16;;chr21:39870339..39870443,-!p1@ERG!1.04!10.05!ERG;;chr2:68592406..68592424,+!p1@PLEK!1.04!9.92!PLEK;;chr16:79634624..79634642,-!p1@MAF!1.03!39.14!MAF;;chr17:70117153..70117174,+!p1@SOX9!1.02!98.38!SOX9;;chr2:178128250..178128293,-!p6@NFE2L2!1.02!24.20!NFE2L2;;chr2:95963120..95963136,+!p2@KCNIP3!1.01!9.12!KCNIP3;;chr19:21512202..21512225,-!p1@ZNF708!1.00!46.81!ZNF708;;chr6:126112039..126112062,+!p8@NCOA7!1.00!10.98!NCOA7;;chr17:53342311..53342400,+!p1@HLF!1.00!10.45!HLF;;chr2:2334997..2335053,-!p1@MYT1L!1.00!8.99!MYT1L;;chr15:57511609..57511651,+!p2@TCF12!0.99!15.07!TCF12;;chr20:62680984..62680999,-!p1@SOX18!0.99!11.77!SOX18;;chr16:86544113..86544145,+!p1@FOXF1!0.99!10.84!FOXF1;;chr16:67198633..67198671,+!p1@HSF4!0.99!8.86!HSF4;;chr3:114173720..114173794,-!p6@ZBTB20!0.99!8.86!ZBTB20;;chr5:2751762..2751784,-!p1@IRX2!0.99!8.86!IRX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.99!8.86!PKNOX2;;chr17:74137321..74137337,-!p1@FOXJ1!0.99!8.73!FOXJ1;;chr22:41763452..41763466,+!p2@TEF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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001895;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002148;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002298;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 40: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.CNhs12322.10165-103B3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.CNhs12322.10165-103B3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.CNhs12322.10165-103B3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.CNhs12322.10165-103B3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.CNhs12322.10165-103B3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10165-103B3
 |is_a=EFO:0002091;;FF:0000002;;FF:0011487
 |is_obsolete=
 |library_id=CNhs12322
+|library_id_phase_based=2:CNhs12322
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10165
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10165
 |name=locus coeruleus, adult, donor10252
 |namespace=
@@ Line 49: / Line 62: @@
 |profile_cagescan=NCig10036,,,
 |profile_hcage=CNhs12322,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 88: / Line 102: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10165-103B3;search_select_hide=table117:FF:10165-103B3
 }}

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FF:10165-103B3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0